* Filter segs and fetch correct metadata. * Initiate seg loading logic on series load into viewport. Need to write. * Automatic consumption of SEG functional. * Pull in master. * Fix issues after pulling in master. * Clean up old segmentation handlers. * WIP * WIP * Poppulate viewport with metadata. * Show hide/segmentation in react-vtkjs-viewport. * feat: 🎸 View segmentations in vtkjs viewport * Filter segs and fetch correct metadata. * Initiate seg loading logic on series load into viewport. Need to write. * Automatic consumption of SEG functional. * Pull in master. * Fix issues after pulling in master. * Clean up old segmentation handlers. * WIP * WIP * Poppulate viewport with metadata. * Show hide/segmentation in react-vtkjs-viewport. * feat: 🎸 View segmentations in vtkjs viewport * Rebase on master. * format format format * add basic extension parts * Updated yarn lock * Fetch derived/referenced displaysets in sidepanel * Add buttons, expose seriesDescription, write notes for Danny. * Add growcut tool extention. -> Move to a seperate repo. * Change some text fields. * expose dialog provider * hide draggable area * No pointer events for now; need to revisit * Don't filter seg from the outset for now * fiddling about * fix path to series data * fix logic to determine next available labelmapindex * Ability to swtich between labelmaps * Return a promise so we can make sure our labelmap is loaded before pulling metadata * Better UI to toggle labelmaps * Fix accidental untoggle of active labelmap for ui * Remove brush tool from cornerstone extension * Add cstools in preInit for seg extension * Add buttons for seg magic * Hide the measurements panel for now * Slightly better seg/scissor icons * Add eraser * ability to switch segments * seg color / switcher * Fix vtk labelmap cache. * sidepanel should scroll if there's overflow * Use a fancier range slider * Slightly prettier buttons * Push in progress * A bit more reactive; handle no-meta * Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0 * chore: kickstart preview * Fix conflict issues * Refactor panel * Isolate increment functions * Wip segment table * Hide selector and add scroll to segmentation * Increase width of segment description * Hide not used items * Add new select for segmentations * Align ui * Fix default segmentation * Fix broken import test * Get measurements panel back and add spacing to grouped buttons * Hide brush and selector and refresh when switching segmentations * Add pointer events back and fix broken tests for measurement table * Update segment list when switching humbnails * CR Update: Minor UI adjustments * CR Update: Set active segment * Move components to components folder * Add new settings ui * Integrate configuration * Improve styles * Float numbers * Improve css * Refresh settings menu if side panel changed * Fix settings rendering logic and remove comments * Extract components * Remove not used tools * Remove non used extension * Use style variables and remove comments * Remove non used dep from lock * Remove tools * Remove segmentation from toolbar * Add todo and brushradius from config * Fix packagejson growcut import * Remove webpack config already defined in parent * Update package json description * Change component name to british english to us * Improve prop types * Rename cornerstone label map event * Scope css * Extract and add doc to helper * Update jsdocs for getDerivedDatasets * Add proptypes and cr updates * Update tablistitem proptypes * config is readonly, rollback destructuring * Remove event for side panel * Add jsdocs for util * Extract getimageid to studymetada * Use ohif log instead of console * Remove specific style from side panel * Fix default props for brush radius * Descructure configuration props from settings component to avoid invalid props * Update proptypes to be required (settings) * Update readme * Remove commandsmodule * Get configuration module inside the component * Set selected segment * Rename extension and use modality to filter * Fix for failing tests (#1423) * hello world * Finish rebase for Igor. * Re-fix cornerstoneTools version that got messed up in merge. * Fix reactivity of isDisabled, write implementation for the SEG panel. * Nuke yarn.lock to stack CST to 4.12.0 * Remove debugger statements. * WIP consume RTSTRUCT * Doc API and add endpoints. * Rebase on SEG PR. * Update DICOM Keyword variables. * Fix metadata vars format * Add basic RT panel along with configuration * Wire up configuration with settings component * Mock structure set tables * Improve design of settings * Integrate list of contours * Extract panel section * Filter by seriesuid * Fix slow settings * Add jump to image * Fix expandable items * Improvements and CR update * CR Update: Remove google config * CR Update: Remove erase tool test * CR Update: Remove instance * CR Update: Fix issue with undefined prop * CR Update: Update yarn lock * Hide actions of structure item Co-authored-by: James A. Petts <jamesapetts@gmail.com> Co-authored-by: dannyrb <danny.ri.brown@gmail.com> Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com> Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
407 lines
12 KiB
JavaScript
407 lines
12 KiB
JavaScript
import cornerstone from 'cornerstone-core';
|
|
import cornerstoneTools from 'cornerstone-tools';
|
|
import OHIF from '@ohif/core';
|
|
|
|
import setCornerstoneLayout from './utils/setCornerstoneLayout.js';
|
|
import { getEnabledElement } from './state';
|
|
import CornerstoneViewportDownloadForm from './CornerstoneViewportDownloadForm';
|
|
const scroll = cornerstoneTools.import('util/scroll');
|
|
|
|
const { studyMetadataManager } = OHIF.utils;
|
|
const { setViewportSpecificData } = OHIF.redux.actions;
|
|
|
|
const commandsModule = ({ servicesManager }) => {
|
|
const actions = {
|
|
rotateViewport: ({ viewports, rotation }) => {
|
|
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
|
|
|
|
if (enabledElement) {
|
|
let viewport = cornerstone.getViewport(enabledElement);
|
|
viewport.rotation += rotation;
|
|
cornerstone.setViewport(enabledElement, viewport);
|
|
}
|
|
},
|
|
flipViewportHorizontal: ({ viewports }) => {
|
|
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
|
|
|
|
if (enabledElement) {
|
|
let viewport = cornerstone.getViewport(enabledElement);
|
|
viewport.hflip = !viewport.hflip;
|
|
cornerstone.setViewport(enabledElement, viewport);
|
|
}
|
|
},
|
|
flipViewportVertical: ({ viewports }) => {
|
|
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
|
|
|
|
if (enabledElement) {
|
|
let viewport = cornerstone.getViewport(enabledElement);
|
|
viewport.vflip = !viewport.vflip;
|
|
cornerstone.setViewport(enabledElement, viewport);
|
|
}
|
|
},
|
|
scaleViewport: ({ direction, viewports }) => {
|
|
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
|
|
const step = direction * 0.15;
|
|
|
|
if (enabledElement) {
|
|
if (step) {
|
|
let viewport = cornerstone.getViewport(enabledElement);
|
|
viewport.scale += step;
|
|
cornerstone.setViewport(enabledElement, viewport);
|
|
} else {
|
|
cornerstone.fitToWindow(enabledElement);
|
|
}
|
|
}
|
|
},
|
|
resetViewport: ({ viewports }) => {
|
|
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
|
|
|
|
if (enabledElement) {
|
|
cornerstone.reset(enabledElement);
|
|
}
|
|
},
|
|
invertViewport: ({ viewports }) => {
|
|
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
|
|
|
|
if (enabledElement) {
|
|
let viewport = cornerstone.getViewport(enabledElement);
|
|
viewport.invert = !viewport.invert;
|
|
cornerstone.setViewport(enabledElement, viewport);
|
|
}
|
|
},
|
|
// TODO: this is receiving `evt` from `ToolbarRow`. We could use it to have
|
|
// better mouseButtonMask sets.
|
|
setToolActive: ({ toolName }) => {
|
|
if (!toolName) {
|
|
console.warn('No toolname provided to setToolActive command');
|
|
}
|
|
cornerstoneTools.setToolActive(toolName, { mouseButtonMask: 1 });
|
|
},
|
|
clearAnnotations: ({ viewports }) => {
|
|
const element = getEnabledElement(viewports.activeViewportIndex);
|
|
if (!element) {
|
|
return;
|
|
}
|
|
|
|
const enabledElement = cornerstone.getEnabledElement(element);
|
|
if (!enabledElement || !enabledElement.image) {
|
|
return;
|
|
}
|
|
|
|
const {
|
|
toolState,
|
|
} = cornerstoneTools.globalImageIdSpecificToolStateManager;
|
|
if (
|
|
!toolState ||
|
|
toolState.hasOwnProperty(enabledElement.image.imageId) === false
|
|
) {
|
|
return;
|
|
}
|
|
|
|
const imageIdToolState = toolState[enabledElement.image.imageId];
|
|
|
|
const measurementsToRemove = [];
|
|
|
|
Object.keys(imageIdToolState).forEach(toolType => {
|
|
const { data } = imageIdToolState[toolType];
|
|
|
|
data.forEach(measurementData => {
|
|
const {
|
|
_id,
|
|
lesionNamingNumber,
|
|
measurementNumber,
|
|
} = measurementData;
|
|
if (!_id) {
|
|
return;
|
|
}
|
|
|
|
measurementsToRemove.push({
|
|
toolType,
|
|
_id,
|
|
lesionNamingNumber,
|
|
measurementNumber,
|
|
});
|
|
});
|
|
});
|
|
|
|
measurementsToRemove.forEach(measurementData => {
|
|
OHIF.measurements.MeasurementHandlers.onRemoved({
|
|
detail: {
|
|
toolType: measurementData.toolType,
|
|
measurementData,
|
|
},
|
|
});
|
|
});
|
|
},
|
|
nextImage: ({ viewports }) => {
|
|
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
|
|
scroll(enabledElement, 1);
|
|
},
|
|
previousImage: ({ viewports }) => {
|
|
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
|
|
scroll(enabledElement, -1);
|
|
},
|
|
getActiveViewportEnabledElement: ({ viewports }) => {
|
|
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
|
|
return enabledElement;
|
|
},
|
|
showDownloadViewportModal: ({ title, viewports }) => {
|
|
const activeViewportIndex = viewports.activeViewportIndex;
|
|
const { UIModalService } = servicesManager.services;
|
|
if (UIModalService) {
|
|
UIModalService.show({
|
|
content: CornerstoneViewportDownloadForm,
|
|
title,
|
|
contentProps: {
|
|
activeViewportIndex,
|
|
onClose: UIModalService.hide,
|
|
},
|
|
});
|
|
}
|
|
},
|
|
updateTableWithNewMeasurementData({
|
|
toolType,
|
|
measurementNumber,
|
|
location,
|
|
description,
|
|
}) {
|
|
// Update all measurements by measurement number
|
|
const measurementApi = OHIF.measurements.MeasurementApi.Instance;
|
|
const measurements = measurementApi.tools[toolType].filter(
|
|
m => m.measurementNumber === measurementNumber
|
|
);
|
|
|
|
measurements.forEach(measurement => {
|
|
measurement.location = location;
|
|
measurement.description = description;
|
|
|
|
measurementApi.updateMeasurement(measurement.toolType, measurement);
|
|
});
|
|
|
|
measurementApi.syncMeasurementsAndToolData();
|
|
|
|
// Update images in all active viewports
|
|
cornerstone.getEnabledElements().forEach(enabledElement => {
|
|
cornerstone.updateImage(enabledElement.element);
|
|
});
|
|
},
|
|
getNearbyToolData({ element, canvasCoordinates, availableToolTypes }) {
|
|
const nearbyTool = {};
|
|
let pointNearTool = false;
|
|
|
|
availableToolTypes.forEach(toolType => {
|
|
const elementToolData = cornerstoneTools.getToolState(
|
|
element,
|
|
toolType
|
|
);
|
|
|
|
if (!elementToolData) {
|
|
return;
|
|
}
|
|
|
|
elementToolData.data.forEach((toolData, index) => {
|
|
let elementToolInstance = cornerstoneTools.getToolForElement(
|
|
element,
|
|
toolType
|
|
);
|
|
|
|
if (!elementToolInstance) {
|
|
elementToolInstance = cornerstoneTools.getToolForElement(
|
|
element,
|
|
`${toolType}Tool`
|
|
);
|
|
}
|
|
|
|
if (!elementToolInstance) {
|
|
console.warn('Tool not found.');
|
|
return undefined;
|
|
}
|
|
|
|
if (
|
|
elementToolInstance.pointNearTool(
|
|
element,
|
|
toolData,
|
|
canvasCoordinates
|
|
)
|
|
) {
|
|
pointNearTool = true;
|
|
nearbyTool.tool = toolData;
|
|
nearbyTool.index = index;
|
|
nearbyTool.toolType = toolType;
|
|
}
|
|
});
|
|
|
|
if (pointNearTool) {
|
|
return false;
|
|
}
|
|
});
|
|
|
|
return pointNearTool ? nearbyTool : undefined;
|
|
},
|
|
removeToolState: ({ element, toolType, tool }) => {
|
|
cornerstoneTools.removeToolState(element, toolType, tool);
|
|
cornerstone.updateImage(element);
|
|
},
|
|
setCornerstoneLayout: () => {
|
|
setCornerstoneLayout();
|
|
},
|
|
setWindowLevel: ({ viewports, window, level }) => {
|
|
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
|
|
|
|
if (enabledElement) {
|
|
let viewport = cornerstone.getViewport(enabledElement);
|
|
|
|
viewport.voi = {
|
|
windowWidth: Number(window),
|
|
windowCenter: Number(level),
|
|
};
|
|
cornerstone.setViewport(enabledElement, viewport);
|
|
}
|
|
},
|
|
jumpToImage: ({
|
|
StudyInstanceUID,
|
|
SOPInstanceUID,
|
|
frameIndex,
|
|
activeViewportIndex
|
|
}) => {
|
|
const study = studyMetadataManager.get(StudyInstanceUID);
|
|
|
|
const displaySet = study.findDisplaySet(ds => {
|
|
return ds.images.find(i => i.getSOPInstanceUID() === SOPInstanceUID)
|
|
});
|
|
|
|
displaySet.SOPInstanceUID = SOPInstanceUID;
|
|
displaySet.frameIndex = frameIndex;
|
|
|
|
window.store.dispatch(setViewportSpecificData(activeViewportIndex, displaySet));
|
|
|
|
cornerstone.getEnabledElements().forEach(enabledElement => {
|
|
cornerstone.updateImage(enabledElement.element);
|
|
});
|
|
}
|
|
};
|
|
|
|
const definitions = {
|
|
jumpToImage: {
|
|
commandFn: actions.jumpToImage,
|
|
storeContexts: [],
|
|
options: {},
|
|
},
|
|
getNearbyToolData: {
|
|
commandFn: actions.getNearbyToolData,
|
|
storeContexts: [],
|
|
options: {},
|
|
},
|
|
removeToolState: {
|
|
commandFn: actions.removeToolState,
|
|
storeContexts: [],
|
|
options: {},
|
|
},
|
|
updateTableWithNewMeasurementData: {
|
|
commandFn: actions.updateTableWithNewMeasurementData,
|
|
storeContexts: [],
|
|
options: {},
|
|
},
|
|
showDownloadViewportModal: {
|
|
commandFn: actions.showDownloadViewportModal,
|
|
storeContexts: ['viewports'],
|
|
options: {},
|
|
},
|
|
getActiveViewportEnabledElement: {
|
|
commandFn: actions.getActiveViewportEnabledElement,
|
|
storeContexts: ['viewports'],
|
|
options: {},
|
|
},
|
|
rotateViewportCW: {
|
|
commandFn: actions.rotateViewport,
|
|
storeContexts: ['viewports'],
|
|
options: { rotation: 90 },
|
|
},
|
|
rotateViewportCCW: {
|
|
commandFn: actions.rotateViewport,
|
|
storeContexts: ['viewports'],
|
|
options: { rotation: -90 },
|
|
},
|
|
invertViewport: {
|
|
commandFn: actions.invertViewport,
|
|
storeContexts: ['viewports'],
|
|
options: {},
|
|
},
|
|
flipViewportVertical: {
|
|
commandFn: actions.flipViewportVertical,
|
|
storeContexts: ['viewports'],
|
|
options: {},
|
|
},
|
|
flipViewportHorizontal: {
|
|
commandFn: actions.flipViewportHorizontal,
|
|
storeContexts: ['viewports'],
|
|
options: {},
|
|
},
|
|
scaleUpViewport: {
|
|
commandFn: actions.scaleViewport,
|
|
storeContexts: ['viewports'],
|
|
options: { direction: 1 },
|
|
},
|
|
scaleDownViewport: {
|
|
commandFn: actions.scaleViewport,
|
|
storeContexts: ['viewports'],
|
|
options: { direction: -1 },
|
|
},
|
|
fitViewportToWindow: {
|
|
commandFn: actions.scaleViewport,
|
|
storeContexts: ['viewports'],
|
|
options: { direction: 0 },
|
|
},
|
|
resetViewport: {
|
|
commandFn: actions.resetViewport,
|
|
storeContexts: ['viewports'],
|
|
options: {},
|
|
},
|
|
clearAnnotations: {
|
|
commandFn: actions.clearAnnotations,
|
|
storeContexts: ['viewports'],
|
|
options: {},
|
|
},
|
|
nextImage: {
|
|
commandFn: actions.nextImage,
|
|
storeContexts: ['viewports'],
|
|
options: {},
|
|
},
|
|
previousImage: {
|
|
commandFn: actions.previousImage,
|
|
storeContexts: ['viewports'],
|
|
options: {},
|
|
},
|
|
// TOOLS
|
|
setToolActive: {
|
|
commandFn: actions.setToolActive,
|
|
storeContexts: [],
|
|
options: {},
|
|
},
|
|
setZoomTool: {
|
|
commandFn: actions.setToolActive,
|
|
storeContexts: [],
|
|
options: { toolName: 'Zoom' },
|
|
},
|
|
setCornerstoneLayout: {
|
|
commandFn: actions.setCornerstoneLayout,
|
|
storeContexts: [],
|
|
options: {},
|
|
context: 'VIEWER',
|
|
},
|
|
setWindowLevel: {
|
|
commandFn: actions.setWindowLevel,
|
|
storeContexts: ['viewports'],
|
|
options: {},
|
|
},
|
|
};
|
|
|
|
return {
|
|
actions,
|
|
definitions,
|
|
defaultContext: 'ACTIVE_VIEWPORT::CORNERSTONE',
|
|
};
|
|
};
|
|
|
|
export default commandsModule;
|