ohif-viewer/extensions/cornerstone/src/commandsModule.js
Igor Octaviano 858484f250
Support of RTSTRUCT visualization (#1524)
* Filter segs and fetch correct metadata.

* Initiate seg loading logic on series load into viewport. Need to write.

* Automatic consumption of SEG functional.

* Pull in master.

* Fix issues after pulling in master.

* Clean up old segmentation handlers.

* WIP

* WIP

* Poppulate viewport with metadata.

* Show hide/segmentation in react-vtkjs-viewport.

* feat: 🎸 View segmentations in vtkjs viewport

* Filter segs and fetch correct metadata.

* Initiate seg loading logic on series load into viewport. Need to write.

* Automatic consumption of SEG functional.

* Pull in master.

* Fix issues after pulling in master.

* Clean up old segmentation handlers.

* WIP

* WIP

* Poppulate viewport with metadata.

* Show hide/segmentation in react-vtkjs-viewport.

* feat: 🎸 View segmentations in vtkjs viewport

* Rebase on master.

* format format format

* add basic extension parts

* Updated yarn lock

* Fetch derived/referenced displaysets in sidepanel

* Add buttons, expose seriesDescription, write notes for Danny.

* Add growcut tool extention. -> Move to a seperate repo.

* Change some text fields.

* expose dialog provider

* hide draggable area

* No pointer events for now; need to revisit

* Don't filter seg from the outset for now

* fiddling about

* fix path to series data

* fix logic to determine next available labelmapindex

* Ability to swtich between labelmaps

* Return a promise so we can make sure our labelmap is loaded before pulling metadata

* Better UI to toggle labelmaps

* Fix accidental untoggle of active labelmap for ui

* Remove brush tool from cornerstone extension

* Add cstools in preInit for seg extension

* Add buttons for seg magic

* Hide the measurements panel for now

* Slightly better seg/scissor icons

* Add eraser

* ability to switch segments

* seg color / switcher

* Fix vtk labelmap cache.

* sidepanel should scroll if there's overflow

* Use a fancier range slider

* Slightly prettier buttons

* Push in progress

* A bit more reactive; handle no-meta

* Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0

* chore: kickstart preview

* Fix conflict issues

* Refactor panel

* Isolate increment functions

* Wip segment table

* Hide selector and add scroll to segmentation

* Increase width of segment description

* Hide not used items

* Add new select for segmentations

* Align ui

* Fix default segmentation

* Fix broken import test

* Get measurements panel back and add spacing to grouped buttons

* Hide brush and selector and refresh when switching segmentations

* Add pointer events back and fix broken tests for measurement table

* Update segment list when switching humbnails

* CR Update: Minor UI adjustments

* CR Update: Set active segment

* Move components to components folder

* Add new settings ui

* Integrate configuration

* Improve styles

* Float numbers

* Improve css

* Refresh settings menu if side panel changed

* Fix settings rendering logic and remove comments

* Extract components

* Remove not used tools

* Remove non used extension

* Use style variables and remove comments

* Remove non used dep from lock

* Remove tools

* Remove segmentation from toolbar

* Add todo and brushradius from config

* Fix packagejson growcut import

* Remove webpack config already defined in parent

* Update package json description

* Change component name to british english to us

* Improve prop types

* Rename cornerstone label map event

* Scope css

* Extract and add doc to helper

* Update jsdocs for getDerivedDatasets

* Add proptypes and cr updates

* Update tablistitem proptypes

* config is readonly, rollback destructuring

* Remove event for side panel

* Add jsdocs for util

* Extract getimageid to studymetada

* Use ohif log instead of console

* Remove specific style from side panel

* Fix default props for brush radius

* Descructure configuration props from settings component to avoid invalid props

* Update proptypes to be required (settings)

* Update readme

* Remove commandsmodule

* Get configuration module inside the component

* Set selected segment

* Rename extension and use modality to filter

* Fix for failing tests (#1423)

* hello world

* Finish rebase for Igor.

* Re-fix cornerstoneTools version that got messed up in merge.

* Fix reactivity of isDisabled, write implementation for the SEG panel.

* Nuke yarn.lock to stack CST to 4.12.0

* Remove debugger statements.

* WIP consume RTSTRUCT

* Doc API and add endpoints.

* Rebase on SEG PR.

* Update DICOM Keyword variables.

* Fix metadata vars format

* Add basic RT panel along with configuration

* Wire up configuration with settings component

* Mock structure set tables

* Improve design of settings

* Integrate list of contours

* Extract panel section

* Filter by seriesuid

* Fix slow settings

* Add jump to image

* Fix expandable items

* Improvements and CR update

* CR Update: Remove google config

* CR Update: Remove erase tool test

* CR Update: Remove instance

* CR Update: Fix issue with undefined prop

* CR Update: Update yarn lock

* Hide actions of structure item

Co-authored-by: James A. Petts <jamesapetts@gmail.com>
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com>
Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
2020-04-09 11:21:43 +01:00

407 lines
12 KiB
JavaScript

import cornerstone from 'cornerstone-core';
import cornerstoneTools from 'cornerstone-tools';
import OHIF from '@ohif/core';
import setCornerstoneLayout from './utils/setCornerstoneLayout.js';
import { getEnabledElement } from './state';
import CornerstoneViewportDownloadForm from './CornerstoneViewportDownloadForm';
const scroll = cornerstoneTools.import('util/scroll');
const { studyMetadataManager } = OHIF.utils;
const { setViewportSpecificData } = OHIF.redux.actions;
const commandsModule = ({ servicesManager }) => {
const actions = {
rotateViewport: ({ viewports, rotation }) => {
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
if (enabledElement) {
let viewport = cornerstone.getViewport(enabledElement);
viewport.rotation += rotation;
cornerstone.setViewport(enabledElement, viewport);
}
},
flipViewportHorizontal: ({ viewports }) => {
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
if (enabledElement) {
let viewport = cornerstone.getViewport(enabledElement);
viewport.hflip = !viewport.hflip;
cornerstone.setViewport(enabledElement, viewport);
}
},
flipViewportVertical: ({ viewports }) => {
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
if (enabledElement) {
let viewport = cornerstone.getViewport(enabledElement);
viewport.vflip = !viewport.vflip;
cornerstone.setViewport(enabledElement, viewport);
}
},
scaleViewport: ({ direction, viewports }) => {
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
const step = direction * 0.15;
if (enabledElement) {
if (step) {
let viewport = cornerstone.getViewport(enabledElement);
viewport.scale += step;
cornerstone.setViewport(enabledElement, viewport);
} else {
cornerstone.fitToWindow(enabledElement);
}
}
},
resetViewport: ({ viewports }) => {
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
if (enabledElement) {
cornerstone.reset(enabledElement);
}
},
invertViewport: ({ viewports }) => {
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
if (enabledElement) {
let viewport = cornerstone.getViewport(enabledElement);
viewport.invert = !viewport.invert;
cornerstone.setViewport(enabledElement, viewport);
}
},
// TODO: this is receiving `evt` from `ToolbarRow`. We could use it to have
// better mouseButtonMask sets.
setToolActive: ({ toolName }) => {
if (!toolName) {
console.warn('No toolname provided to setToolActive command');
}
cornerstoneTools.setToolActive(toolName, { mouseButtonMask: 1 });
},
clearAnnotations: ({ viewports }) => {
const element = getEnabledElement(viewports.activeViewportIndex);
if (!element) {
return;
}
const enabledElement = cornerstone.getEnabledElement(element);
if (!enabledElement || !enabledElement.image) {
return;
}
const {
toolState,
} = cornerstoneTools.globalImageIdSpecificToolStateManager;
if (
!toolState ||
toolState.hasOwnProperty(enabledElement.image.imageId) === false
) {
return;
}
const imageIdToolState = toolState[enabledElement.image.imageId];
const measurementsToRemove = [];
Object.keys(imageIdToolState).forEach(toolType => {
const { data } = imageIdToolState[toolType];
data.forEach(measurementData => {
const {
_id,
lesionNamingNumber,
measurementNumber,
} = measurementData;
if (!_id) {
return;
}
measurementsToRemove.push({
toolType,
_id,
lesionNamingNumber,
measurementNumber,
});
});
});
measurementsToRemove.forEach(measurementData => {
OHIF.measurements.MeasurementHandlers.onRemoved({
detail: {
toolType: measurementData.toolType,
measurementData,
},
});
});
},
nextImage: ({ viewports }) => {
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
scroll(enabledElement, 1);
},
previousImage: ({ viewports }) => {
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
scroll(enabledElement, -1);
},
getActiveViewportEnabledElement: ({ viewports }) => {
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
return enabledElement;
},
showDownloadViewportModal: ({ title, viewports }) => {
const activeViewportIndex = viewports.activeViewportIndex;
const { UIModalService } = servicesManager.services;
if (UIModalService) {
UIModalService.show({
content: CornerstoneViewportDownloadForm,
title,
contentProps: {
activeViewportIndex,
onClose: UIModalService.hide,
},
});
}
},
updateTableWithNewMeasurementData({
toolType,
measurementNumber,
location,
description,
}) {
// Update all measurements by measurement number
const measurementApi = OHIF.measurements.MeasurementApi.Instance;
const measurements = measurementApi.tools[toolType].filter(
m => m.measurementNumber === measurementNumber
);
measurements.forEach(measurement => {
measurement.location = location;
measurement.description = description;
measurementApi.updateMeasurement(measurement.toolType, measurement);
});
measurementApi.syncMeasurementsAndToolData();
// Update images in all active viewports
cornerstone.getEnabledElements().forEach(enabledElement => {
cornerstone.updateImage(enabledElement.element);
});
},
getNearbyToolData({ element, canvasCoordinates, availableToolTypes }) {
const nearbyTool = {};
let pointNearTool = false;
availableToolTypes.forEach(toolType => {
const elementToolData = cornerstoneTools.getToolState(
element,
toolType
);
if (!elementToolData) {
return;
}
elementToolData.data.forEach((toolData, index) => {
let elementToolInstance = cornerstoneTools.getToolForElement(
element,
toolType
);
if (!elementToolInstance) {
elementToolInstance = cornerstoneTools.getToolForElement(
element,
`${toolType}Tool`
);
}
if (!elementToolInstance) {
console.warn('Tool not found.');
return undefined;
}
if (
elementToolInstance.pointNearTool(
element,
toolData,
canvasCoordinates
)
) {
pointNearTool = true;
nearbyTool.tool = toolData;
nearbyTool.index = index;
nearbyTool.toolType = toolType;
}
});
if (pointNearTool) {
return false;
}
});
return pointNearTool ? nearbyTool : undefined;
},
removeToolState: ({ element, toolType, tool }) => {
cornerstoneTools.removeToolState(element, toolType, tool);
cornerstone.updateImage(element);
},
setCornerstoneLayout: () => {
setCornerstoneLayout();
},
setWindowLevel: ({ viewports, window, level }) => {
const enabledElement = getEnabledElement(viewports.activeViewportIndex);
if (enabledElement) {
let viewport = cornerstone.getViewport(enabledElement);
viewport.voi = {
windowWidth: Number(window),
windowCenter: Number(level),
};
cornerstone.setViewport(enabledElement, viewport);
}
},
jumpToImage: ({
StudyInstanceUID,
SOPInstanceUID,
frameIndex,
activeViewportIndex
}) => {
const study = studyMetadataManager.get(StudyInstanceUID);
const displaySet = study.findDisplaySet(ds => {
return ds.images.find(i => i.getSOPInstanceUID() === SOPInstanceUID)
});
displaySet.SOPInstanceUID = SOPInstanceUID;
displaySet.frameIndex = frameIndex;
window.store.dispatch(setViewportSpecificData(activeViewportIndex, displaySet));
cornerstone.getEnabledElements().forEach(enabledElement => {
cornerstone.updateImage(enabledElement.element);
});
}
};
const definitions = {
jumpToImage: {
commandFn: actions.jumpToImage,
storeContexts: [],
options: {},
},
getNearbyToolData: {
commandFn: actions.getNearbyToolData,
storeContexts: [],
options: {},
},
removeToolState: {
commandFn: actions.removeToolState,
storeContexts: [],
options: {},
},
updateTableWithNewMeasurementData: {
commandFn: actions.updateTableWithNewMeasurementData,
storeContexts: [],
options: {},
},
showDownloadViewportModal: {
commandFn: actions.showDownloadViewportModal,
storeContexts: ['viewports'],
options: {},
},
getActiveViewportEnabledElement: {
commandFn: actions.getActiveViewportEnabledElement,
storeContexts: ['viewports'],
options: {},
},
rotateViewportCW: {
commandFn: actions.rotateViewport,
storeContexts: ['viewports'],
options: { rotation: 90 },
},
rotateViewportCCW: {
commandFn: actions.rotateViewport,
storeContexts: ['viewports'],
options: { rotation: -90 },
},
invertViewport: {
commandFn: actions.invertViewport,
storeContexts: ['viewports'],
options: {},
},
flipViewportVertical: {
commandFn: actions.flipViewportVertical,
storeContexts: ['viewports'],
options: {},
},
flipViewportHorizontal: {
commandFn: actions.flipViewportHorizontal,
storeContexts: ['viewports'],
options: {},
},
scaleUpViewport: {
commandFn: actions.scaleViewport,
storeContexts: ['viewports'],
options: { direction: 1 },
},
scaleDownViewport: {
commandFn: actions.scaleViewport,
storeContexts: ['viewports'],
options: { direction: -1 },
},
fitViewportToWindow: {
commandFn: actions.scaleViewport,
storeContexts: ['viewports'],
options: { direction: 0 },
},
resetViewport: {
commandFn: actions.resetViewport,
storeContexts: ['viewports'],
options: {},
},
clearAnnotations: {
commandFn: actions.clearAnnotations,
storeContexts: ['viewports'],
options: {},
},
nextImage: {
commandFn: actions.nextImage,
storeContexts: ['viewports'],
options: {},
},
previousImage: {
commandFn: actions.previousImage,
storeContexts: ['viewports'],
options: {},
},
// TOOLS
setToolActive: {
commandFn: actions.setToolActive,
storeContexts: [],
options: {},
},
setZoomTool: {
commandFn: actions.setToolActive,
storeContexts: [],
options: { toolName: 'Zoom' },
},
setCornerstoneLayout: {
commandFn: actions.setCornerstoneLayout,
storeContexts: [],
options: {},
context: 'VIEWER',
},
setWindowLevel: {
commandFn: actions.setWindowLevel,
storeContexts: ['viewports'],
options: {},
},
};
return {
actions,
definitions,
defaultContext: 'ACTIVE_VIEWPORT::CORNERSTONE',
};
};
export default commandsModule;