Files
ohif-viewer/extensions/dicom-rt/src/components/RTPanel/RTPanel.js
T
858484f250 Support of RTSTRUCT visualization (#1524)
* Filter segs and fetch correct metadata.

* Initiate seg loading logic on series load into viewport. Need to write.

* Automatic consumption of SEG functional.

* Pull in master.

* Fix issues after pulling in master.

* Clean up old segmentation handlers.

* WIP

* WIP

* Poppulate viewport with metadata.

* Show hide/segmentation in react-vtkjs-viewport.

* feat: 🎸 View segmentations in vtkjs viewport

* Filter segs and fetch correct metadata.

* Initiate seg loading logic on series load into viewport. Need to write.

* Automatic consumption of SEG functional.

* Pull in master.

* Fix issues after pulling in master.

* Clean up old segmentation handlers.

* WIP

* WIP

* Poppulate viewport with metadata.

* Show hide/segmentation in react-vtkjs-viewport.

* feat: 🎸 View segmentations in vtkjs viewport

* Rebase on master.

* format format format

* add basic extension parts

* Updated yarn lock

* Fetch derived/referenced displaysets in sidepanel

* Add buttons, expose seriesDescription, write notes for Danny.

* Add growcut tool extention. -> Move to a seperate repo.

* Change some text fields.

* expose dialog provider

* hide draggable area

* No pointer events for now; need to revisit

* Don't filter seg from the outset for now

* fiddling about

* fix path to series data

* fix logic to determine next available labelmapindex

* Ability to swtich between labelmaps

* Return a promise so we can make sure our labelmap is loaded before pulling metadata

* Better UI to toggle labelmaps

* Fix accidental untoggle of active labelmap for ui

* Remove brush tool from cornerstone extension

* Add cstools in preInit for seg extension

* Add buttons for seg magic

* Hide the measurements panel for now

* Slightly better seg/scissor icons

* Add eraser

* ability to switch segments

* seg color / switcher

* Fix vtk labelmap cache.

* sidepanel should scroll if there's overflow

* Use a fancier range slider

* Slightly prettier buttons

* Push in progress

* A bit more reactive; handle no-meta

* Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0

* chore: kickstart preview

* Fix conflict issues

* Refactor panel

* Isolate increment functions

* Wip segment table

* Hide selector and add scroll to segmentation

* Increase width of segment description

* Hide not used items

* Add new select for segmentations

* Align ui

* Fix default segmentation

* Fix broken import test

* Get measurements panel back and add spacing to grouped buttons

* Hide brush and selector and refresh when switching segmentations

* Add pointer events back and fix broken tests for measurement table

* Update segment list when switching humbnails

* CR Update: Minor UI adjustments

* CR Update: Set active segment

* Move components to components folder

* Add new settings ui

* Integrate configuration

* Improve styles

* Float numbers

* Improve css

* Refresh settings menu if side panel changed

* Fix settings rendering logic and remove comments

* Extract components

* Remove not used tools

* Remove non used extension

* Use style variables and remove comments

* Remove non used dep from lock

* Remove tools

* Remove segmentation from toolbar

* Add todo and brushradius from config

* Fix packagejson growcut import

* Remove webpack config already defined in parent

* Update package json description

* Change component name to british english to us

* Improve prop types

* Rename cornerstone label map event

* Scope css

* Extract and add doc to helper

* Update jsdocs for getDerivedDatasets

* Add proptypes and cr updates

* Update tablistitem proptypes

* config is readonly, rollback destructuring

* Remove event for side panel

* Add jsdocs for util

* Extract getimageid to studymetada

* Use ohif log instead of console

* Remove specific style from side panel

* Fix default props for brush radius

* Descructure configuration props from settings component to avoid invalid props

* Update proptypes to be required (settings)

* Update readme

* Remove commandsmodule

* Get configuration module inside the component

* Set selected segment

* Rename extension and use modality to filter

* Fix for failing tests (#1423)

* hello world

* Finish rebase for Igor.

* Re-fix cornerstoneTools version that got messed up in merge.

* Fix reactivity of isDisabled, write implementation for the SEG panel.

* Nuke yarn.lock to stack CST to 4.12.0

* Remove debugger statements.

* WIP consume RTSTRUCT

* Doc API and add endpoints.

* Rebase on SEG PR.

* Update DICOM Keyword variables.

* Fix metadata vars format

* Add basic RT panel along with configuration

* Wire up configuration with settings component

* Mock structure set tables

* Improve design of settings

* Integrate list of contours

* Extract panel section

* Filter by seriesuid

* Fix slow settings

* Add jump to image

* Fix expandable items

* Improvements and CR update

* CR Update: Remove google config

* CR Update: Remove erase tool test

* CR Update: Remove instance

* CR Update: Fix issue with undefined prop

* CR Update: Update yarn lock

* Hide actions of structure item

Co-authored-by: James A. Petts <jamesapetts@gmail.com>
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com>
Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
2020-04-09 12:21:43 +02:00

259 lines
9.0 KiB
JavaScript

import React, { useState, useEffect } from 'react';
import PropTypes from 'prop-types';
import cornerstoneTools from 'cornerstone-tools';
import cornerstone from 'cornerstone-core';
import { ScrollableArea, TableList, Icon } from '@ohif/ui';
import { utils } from '@ohif/core';
import './RTPanel.css';
import StructureSetItem from '../StructureSetItem/StructureSetItem';
import RTPanelSettings from '../RTSettings/RTSettings';
import PanelSection from '../PanelSection/PanelSection';
import LoadingIndicator from '../LoadingIndicator/LoadingIndicator';
const { studyMetadataManager } = utils;
const refreshViewport = () => {
cornerstone.getEnabledElements().forEach(enabledElement => {
cornerstone.updateImage(enabledElement.element);
});
};
/**
* RTPanel component
*
* @param {Object} props
* @param {Array} props.studies
* @param {Array} props.viewports - viewportSpecificData
* @param {number} props.activeIndex - activeViewportIndex
* @param {number} props.isOpen - isOpen
* @returns component
*/
const RTPanel = ({ studies, viewports, activeIndex, isOpen, onContourItemClick }) => {
const [selectedContour, setSelectedContour] = useState();
const DEFAULT_SET_INDEX = 0;
const DEFAULT_STATE = {
referencedDisplaysets: [],
sets: [],
selectedSet: null,
};
const [state, setState] = useState(DEFAULT_STATE);
const [showSettings, setShowSettings] = useState(false);
const activeViewport = viewports[activeIndex];
/*
* TODO: Improve the way we notify parts of the app that depends on rts to be loaded.
*
* Currently we are using a non-ideal implementation through a custom event to notify the rtstruct panel
* or other components that could rely on loaded rtstructs that
* the first batch of structs were loaded so that e.g. when the user opens the panel
* before the structs are fully loaded, the panel can subscribe to this custom event
* and update itself with the new structs.
*
* This limitation is due to the fact that the rtmodule is an object (which will be
* updated after the structs are loaded) that React its not aware of its changes
* because the module object its not passed in to the panel component as prop but accessed externally.
*
* Improving this event approach to something reactive that can be tracked inside the react lifecycle,
* allows us to easily watch the module or the rtstruct loading process in any other component
* without subscribing to external events.
*/
useEffect(() => {
document.addEventListener('extensiondicomrtrtloaded', updateStructureSets);
return () => {
document.removeEventListener('extensiondicomrtrtloaded', updateStructureSets);
};
}, []);
const updateStructureSets = () => {
const module = cornerstoneTools.getModule('rtstruct');
const StructureSets = module.state.StructureSets;
if (StructureSets && StructureSets.length) {
const viewportSets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(
activeViewport.SeriesInstanceUID
);
const studyMetadata = studyMetadataManager.get(activeViewport.StudyInstanceUID);
const referencedDisplaysets = studyMetadata.getDerivedDatasets({
referencedSeriesInstanceUID: activeViewport.SeriesInstanceUID,
Modality: 'RTSTRUCT',
});
if (viewportSets.length) {
const defaultSet = viewportSets[DEFAULT_SET_INDEX];
setState({
referencedDisplaysets,
selectedSet: defaultSet,
sets: viewportSets
});
} else {
setState(DEFAULT_STATE);
}
}
};
useEffect(() => {
updateStructureSets();
}, [studies, viewports, activeIndex]);
useEffect(() => {
setShowSettings(showSettings && !isOpen);
}, [isOpen]);
const toContourItem = ({ ROINumber, ROIName, RTROIObservations, colorArray, visible }, loadedSet) => {
let interpretedType = '';
if (RTROIObservations && RTROIObservations.RTROIInterpretedType) {
interpretedType = `(${RTROIObservations.RTROIInterpretedType})`;
}
const isSameContour = selectedContour && selectedContour === ROINumber;
return (
<StructureSetItem
key={ROINumber}
selected={isSameContour}
onClick={() => {
setSelectedContour(isSameContour ? null : ROINumber);
const enabledElements = cornerstone.getEnabledElements();
const element = enabledElements[activeIndex].element;
const toolState = cornerstoneTools.getToolState(element, 'stack');
if (!toolState) {
return;
}
const imageIds = toolState.data[0].imageIds;
const module = cornerstoneTools.getModule('rtstruct');
const imageId = module.getters.imageIdOfCenterFrameOfROIContour(
state.selectedSet.SeriesInstanceUID,
ROINumber,
imageIds
);
const frameIndex = imageIds.indexOf(imageId);
const SOPInstanceUID = cornerstone.metaData.get('SOPInstanceUID', imageId);
const StudyInstanceUID = cornerstone.metaData.get('StudyInstanceUID', imageId);
onContourItemClick({
StudyInstanceUID,
SOPInstanceUID,
frameIndex,
activeViewportIndex: activeIndex
});
}}
label={`${ROIName} ${interpretedType}`}
index={ROINumber}
color={colorArray}
visible={visible}
onVisibilityChange={() => {
const module = cornerstoneTools.getModule('rtstruct');
module.setters.toggleROIContour(state.selectedSet.SeriesInstanceUID, ROINumber);
}}
/>
);
};
const configurationChangeHandler = newConfiguration => {
const module = cornerstoneTools.getModule('rtstruct');
module.configuration.lineWidth = newConfiguration.lineWidth;
module.configuration.opacity = newConfiguration.opacity;
refreshViewport();
};
if (showSettings) {
const module = cornerstoneTools.getModule('rtstruct');
return (
<RTPanelSettings
configuration={module.configuration}
onBack={() => setShowSettings(false)}
onChange={configurationChangeHandler}
/>
);
}
return (
<div className="dcmrt-panel">
<div className="dcmrt-panel-header">
<h3>RT Structure Sets</h3>
<Icon
className="cog-icon"
name="cog"
width="25px"
height="25px"
onClick={() => setShowSettings(true)}
/>
</div>
{!state.referencedDisplaysets.length && <LoadingIndicator expand height="70px" width="70px" />}
{state.referencedDisplaysets.map(displaySet => {
const { SeriesInstanceUID, metadata, isLoaded } = displaySet;
const module = cornerstoneTools.getModule('rtstruct');
const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(viewports[activeIndex].SeriesInstanceUID);
const loadedSet = sets.find(set => set.SeriesInstanceUID === SeriesInstanceUID);
return (
<PanelSection
key={SeriesInstanceUID}
title={metadata.StructureSetLabel}
loading={!isLoaded || !loadedSet}
visible={isLoaded && loadedSet.visible}
hideVisibleButton={!isLoaded}
expanded={isLoaded && loadedSet.SeriesInstanceUID === state.selectedSet.SeriesInstanceUID}
onVisibilityChange={() => {
const module = cornerstoneTools.getModule('rtstruct');
module.setters.toggleStructureSet(SeriesInstanceUID);
}}
onExpandChange={async () => {
if (!isLoaded) {
await displaySet.load(viewports[activeIndex], studies);
const module = cornerstoneTools.getModule('rtstruct');
const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(viewports[activeIndex].SeriesInstanceUID);
const selectedSet = sets.find(set => set.SeriesInstanceUID === SeriesInstanceUID);
setState(state => ({ ...state, selectedSet, sets }));
}
}}
>
<ScrollableArea>
<TableList headless>
{isLoaded && loadedSet.ROIContours.map(c => toContourItem(c, loadedSet))}
</TableList>
</ScrollableArea>
</PanelSection>
);
})}
</div>
);
};
RTPanel.propTypes = {
viewports: PropTypes.shape({
displaySetInstanceUID: PropTypes.string,
frameRate: PropTypes.any,
InstanceNumber: PropTypes.number,
isMultiFrame: PropTypes.bool,
isReconstructable: PropTypes.bool,
Modality: PropTypes.string,
plugin: PropTypes.string,
SeriesDate: PropTypes.string,
SeriesDescription: PropTypes.string,
SeriesInstanceUID: PropTypes.string,
SeriesNumber: PropTypes.any,
SeriesTime: PropTypes.string,
sopClassUIDs: PropTypes.arrayOf(PropTypes.string),
StudyInstanceUID: PropTypes.string,
}),
activeIndex: PropTypes.number.isRequired,
studies: PropTypes.array.isRequired,
isOpen: PropTypes.bool.isRequired,
};
RTPanel.defaultProps = {};
export default RTPanel;