* Filter segs and fetch correct metadata. * Initiate seg loading logic on series load into viewport. Need to write. * Automatic consumption of SEG functional. * Pull in master. * Fix issues after pulling in master. * Clean up old segmentation handlers. * WIP * WIP * Poppulate viewport with metadata. * Show hide/segmentation in react-vtkjs-viewport. * feat: 🎸 View segmentations in vtkjs viewport * Filter segs and fetch correct metadata. * Initiate seg loading logic on series load into viewport. Need to write. * Automatic consumption of SEG functional. * Pull in master. * Fix issues after pulling in master. * Clean up old segmentation handlers. * WIP * WIP * Poppulate viewport with metadata. * Show hide/segmentation in react-vtkjs-viewport. * feat: 🎸 View segmentations in vtkjs viewport * Rebase on master. * format format format * add basic extension parts * Updated yarn lock * Fetch derived/referenced displaysets in sidepanel * Add buttons, expose seriesDescription, write notes for Danny. * Add growcut tool extention. -> Move to a seperate repo. * Change some text fields. * expose dialog provider * hide draggable area * No pointer events for now; need to revisit * Don't filter seg from the outset for now * fiddling about * fix path to series data * fix logic to determine next available labelmapindex * Ability to swtich between labelmaps * Return a promise so we can make sure our labelmap is loaded before pulling metadata * Better UI to toggle labelmaps * Fix accidental untoggle of active labelmap for ui * Remove brush tool from cornerstone extension * Add cstools in preInit for seg extension * Add buttons for seg magic * Hide the measurements panel for now * Slightly better seg/scissor icons * Add eraser * ability to switch segments * seg color / switcher * Fix vtk labelmap cache. * sidepanel should scroll if there's overflow * Use a fancier range slider * Slightly prettier buttons * Push in progress * A bit more reactive; handle no-meta * Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0 * chore: kickstart preview * Fix conflict issues * Refactor panel * Isolate increment functions * Wip segment table * Hide selector and add scroll to segmentation * Increase width of segment description * Hide not used items * Add new select for segmentations * Align ui * Fix default segmentation * Fix broken import test * Get measurements panel back and add spacing to grouped buttons * Hide brush and selector and refresh when switching segmentations * Add pointer events back and fix broken tests for measurement table * Update segment list when switching humbnails * CR Update: Minor UI adjustments * CR Update: Set active segment * Move components to components folder * Add new settings ui * Integrate configuration * Improve styles * Float numbers * Improve css * Refresh settings menu if side panel changed * Fix settings rendering logic and remove comments * Extract components * Remove not used tools * Remove non used extension * Use style variables and remove comments * Remove non used dep from lock * Remove tools * Remove segmentation from toolbar * Add todo and brushradius from config * Fix packagejson growcut import * Remove webpack config already defined in parent * Update package json description * Change component name to british english to us * Improve prop types * Rename cornerstone label map event * Scope css * Extract and add doc to helper * Update jsdocs for getDerivedDatasets * Add proptypes and cr updates * Update tablistitem proptypes * config is readonly, rollback destructuring * Remove event for side panel * Add jsdocs for util * Extract getimageid to studymetada * Use ohif log instead of console * Remove specific style from side panel * Fix default props for brush radius * Descructure configuration props from settings component to avoid invalid props * Update proptypes to be required (settings) * Update readme * Remove commandsmodule * Get configuration module inside the component * Set selected segment * Rename extension and use modality to filter * Fix for failing tests (#1423) * hello world * Finish rebase for Igor. * Re-fix cornerstoneTools version that got messed up in merge. * Fix reactivity of isDisabled, write implementation for the SEG panel. * Nuke yarn.lock to stack CST to 4.12.0 * Remove debugger statements. * WIP consume RTSTRUCT * Doc API and add endpoints. * Rebase on SEG PR. * Update DICOM Keyword variables. * Fix metadata vars format * Add basic RT panel along with configuration * Wire up configuration with settings component * Mock structure set tables * Improve design of settings * Integrate list of contours * Extract panel section * Filter by seriesuid * Fix slow settings * Add jump to image * Fix expandable items * Improvements and CR update * CR Update: Remove google config * CR Update: Remove erase tool test * CR Update: Remove instance * CR Update: Fix issue with undefined prop * CR Update: Update yarn lock * Hide actions of structure item Co-authored-by: James A. Petts <jamesapetts@gmail.com> Co-authored-by: dannyrb <danny.ri.brown@gmail.com> Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com> Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
259 lines
9.0 KiB
JavaScript
259 lines
9.0 KiB
JavaScript
import React, { useState, useEffect } from 'react';
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import PropTypes from 'prop-types';
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import cornerstoneTools from 'cornerstone-tools';
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import cornerstone from 'cornerstone-core';
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import { ScrollableArea, TableList, Icon } from '@ohif/ui';
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import { utils } from '@ohif/core';
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import './RTPanel.css';
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import StructureSetItem from '../StructureSetItem/StructureSetItem';
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import RTPanelSettings from '../RTSettings/RTSettings';
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import PanelSection from '../PanelSection/PanelSection';
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import LoadingIndicator from '../LoadingIndicator/LoadingIndicator';
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const { studyMetadataManager } = utils;
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const refreshViewport = () => {
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cornerstone.getEnabledElements().forEach(enabledElement => {
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cornerstone.updateImage(enabledElement.element);
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});
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};
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/**
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* RTPanel component
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*
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* @param {Object} props
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* @param {Array} props.studies
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* @param {Array} props.viewports - viewportSpecificData
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* @param {number} props.activeIndex - activeViewportIndex
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* @param {number} props.isOpen - isOpen
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* @returns component
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*/
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const RTPanel = ({ studies, viewports, activeIndex, isOpen, onContourItemClick }) => {
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const [selectedContour, setSelectedContour] = useState();
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const DEFAULT_SET_INDEX = 0;
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const DEFAULT_STATE = {
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referencedDisplaysets: [],
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sets: [],
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selectedSet: null,
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};
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const [state, setState] = useState(DEFAULT_STATE);
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const [showSettings, setShowSettings] = useState(false);
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const activeViewport = viewports[activeIndex];
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/*
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* TODO: Improve the way we notify parts of the app that depends on rts to be loaded.
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*
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* Currently we are using a non-ideal implementation through a custom event to notify the rtstruct panel
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* or other components that could rely on loaded rtstructs that
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* the first batch of structs were loaded so that e.g. when the user opens the panel
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* before the structs are fully loaded, the panel can subscribe to this custom event
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* and update itself with the new structs.
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*
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* This limitation is due to the fact that the rtmodule is an object (which will be
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* updated after the structs are loaded) that React its not aware of its changes
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* because the module object its not passed in to the panel component as prop but accessed externally.
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*
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* Improving this event approach to something reactive that can be tracked inside the react lifecycle,
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* allows us to easily watch the module or the rtstruct loading process in any other component
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* without subscribing to external events.
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*/
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useEffect(() => {
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document.addEventListener('extensiondicomrtrtloaded', updateStructureSets);
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return () => {
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document.removeEventListener('extensiondicomrtrtloaded', updateStructureSets);
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};
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}, []);
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const updateStructureSets = () => {
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const module = cornerstoneTools.getModule('rtstruct');
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const StructureSets = module.state.StructureSets;
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if (StructureSets && StructureSets.length) {
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const viewportSets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(
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activeViewport.SeriesInstanceUID
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);
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const studyMetadata = studyMetadataManager.get(activeViewport.StudyInstanceUID);
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const referencedDisplaysets = studyMetadata.getDerivedDatasets({
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referencedSeriesInstanceUID: activeViewport.SeriesInstanceUID,
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Modality: 'RTSTRUCT',
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});
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if (viewportSets.length) {
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const defaultSet = viewportSets[DEFAULT_SET_INDEX];
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setState({
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referencedDisplaysets,
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selectedSet: defaultSet,
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sets: viewportSets
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});
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} else {
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setState(DEFAULT_STATE);
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}
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}
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};
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useEffect(() => {
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updateStructureSets();
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}, [studies, viewports, activeIndex]);
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useEffect(() => {
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setShowSettings(showSettings && !isOpen);
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}, [isOpen]);
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const toContourItem = ({ ROINumber, ROIName, RTROIObservations, colorArray, visible }, loadedSet) => {
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let interpretedType = '';
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if (RTROIObservations && RTROIObservations.RTROIInterpretedType) {
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interpretedType = `(${RTROIObservations.RTROIInterpretedType})`;
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}
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const isSameContour = selectedContour && selectedContour === ROINumber;
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return (
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<StructureSetItem
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key={ROINumber}
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selected={isSameContour}
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onClick={() => {
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setSelectedContour(isSameContour ? null : ROINumber);
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const enabledElements = cornerstone.getEnabledElements();
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const element = enabledElements[activeIndex].element;
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const toolState = cornerstoneTools.getToolState(element, 'stack');
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if (!toolState) {
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return;
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}
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const imageIds = toolState.data[0].imageIds;
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const module = cornerstoneTools.getModule('rtstruct');
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const imageId = module.getters.imageIdOfCenterFrameOfROIContour(
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state.selectedSet.SeriesInstanceUID,
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ROINumber,
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imageIds
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);
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const frameIndex = imageIds.indexOf(imageId);
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const SOPInstanceUID = cornerstone.metaData.get('SOPInstanceUID', imageId);
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const StudyInstanceUID = cornerstone.metaData.get('StudyInstanceUID', imageId);
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onContourItemClick({
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StudyInstanceUID,
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SOPInstanceUID,
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frameIndex,
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activeViewportIndex: activeIndex
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});
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}}
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label={`${ROIName} ${interpretedType}`}
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index={ROINumber}
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color={colorArray}
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visible={visible}
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onVisibilityChange={() => {
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const module = cornerstoneTools.getModule('rtstruct');
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module.setters.toggleROIContour(state.selectedSet.SeriesInstanceUID, ROINumber);
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}}
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/>
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);
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};
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const configurationChangeHandler = newConfiguration => {
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const module = cornerstoneTools.getModule('rtstruct');
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module.configuration.lineWidth = newConfiguration.lineWidth;
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module.configuration.opacity = newConfiguration.opacity;
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refreshViewport();
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};
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if (showSettings) {
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const module = cornerstoneTools.getModule('rtstruct');
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return (
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<RTPanelSettings
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configuration={module.configuration}
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onBack={() => setShowSettings(false)}
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onChange={configurationChangeHandler}
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/>
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);
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}
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return (
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<div className="dcmrt-panel">
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<div className="dcmrt-panel-header">
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<h3>RT Structure Sets</h3>
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<Icon
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className="cog-icon"
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name="cog"
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width="25px"
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height="25px"
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onClick={() => setShowSettings(true)}
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/>
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</div>
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{!state.referencedDisplaysets.length && <LoadingIndicator expand height="70px" width="70px" />}
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{state.referencedDisplaysets.map(displaySet => {
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const { SeriesInstanceUID, metadata, isLoaded } = displaySet;
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const module = cornerstoneTools.getModule('rtstruct');
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const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(viewports[activeIndex].SeriesInstanceUID);
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const loadedSet = sets.find(set => set.SeriesInstanceUID === SeriesInstanceUID);
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return (
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<PanelSection
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key={SeriesInstanceUID}
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title={metadata.StructureSetLabel}
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loading={!isLoaded || !loadedSet}
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visible={isLoaded && loadedSet.visible}
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hideVisibleButton={!isLoaded}
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expanded={isLoaded && loadedSet.SeriesInstanceUID === state.selectedSet.SeriesInstanceUID}
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onVisibilityChange={() => {
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const module = cornerstoneTools.getModule('rtstruct');
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module.setters.toggleStructureSet(SeriesInstanceUID);
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}}
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onExpandChange={async () => {
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if (!isLoaded) {
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await displaySet.load(viewports[activeIndex], studies);
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const module = cornerstoneTools.getModule('rtstruct');
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const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(viewports[activeIndex].SeriesInstanceUID);
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const selectedSet = sets.find(set => set.SeriesInstanceUID === SeriesInstanceUID);
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setState(state => ({ ...state, selectedSet, sets }));
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}
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}}
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>
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<ScrollableArea>
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<TableList headless>
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{isLoaded && loadedSet.ROIContours.map(c => toContourItem(c, loadedSet))}
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</TableList>
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</ScrollableArea>
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</PanelSection>
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);
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})}
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</div>
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);
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};
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RTPanel.propTypes = {
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viewports: PropTypes.shape({
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displaySetInstanceUID: PropTypes.string,
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frameRate: PropTypes.any,
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InstanceNumber: PropTypes.number,
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isMultiFrame: PropTypes.bool,
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isReconstructable: PropTypes.bool,
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Modality: PropTypes.string,
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plugin: PropTypes.string,
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SeriesDate: PropTypes.string,
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SeriesDescription: PropTypes.string,
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SeriesInstanceUID: PropTypes.string,
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SeriesNumber: PropTypes.any,
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SeriesTime: PropTypes.string,
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sopClassUIDs: PropTypes.arrayOf(PropTypes.string),
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StudyInstanceUID: PropTypes.string,
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}),
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activeIndex: PropTypes.number.isRequired,
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studies: PropTypes.array.isRequired,
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isOpen: PropTypes.bool.isRequired,
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};
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RTPanel.defaultProps = {};
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export default RTPanel;
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