* Filter segs and fetch correct metadata. * Initiate seg loading logic on series load into viewport. Need to write. * Automatic consumption of SEG functional. * Pull in master. * Fix issues after pulling in master. * Clean up old segmentation handlers. * WIP * WIP * Poppulate viewport with metadata. * Show hide/segmentation in react-vtkjs-viewport. * feat: 🎸 View segmentations in vtkjs viewport * Filter segs and fetch correct metadata. * Initiate seg loading logic on series load into viewport. Need to write. * Automatic consumption of SEG functional. * Pull in master. * Fix issues after pulling in master. * Clean up old segmentation handlers. * WIP * WIP * Poppulate viewport with metadata. * Show hide/segmentation in react-vtkjs-viewport. * feat: 🎸 View segmentations in vtkjs viewport * Rebase on master. * format format format * add basic extension parts * Updated yarn lock * Fetch derived/referenced displaysets in sidepanel * Add buttons, expose seriesDescription, write notes for Danny. * Add growcut tool extention. -> Move to a seperate repo. * Change some text fields. * expose dialog provider * hide draggable area * No pointer events for now; need to revisit * Don't filter seg from the outset for now * fiddling about * fix path to series data * fix logic to determine next available labelmapindex * Ability to swtich between labelmaps * Return a promise so we can make sure our labelmap is loaded before pulling metadata * Better UI to toggle labelmaps * Fix accidental untoggle of active labelmap for ui * Remove brush tool from cornerstone extension * Add cstools in preInit for seg extension * Add buttons for seg magic * Hide the measurements panel for now * Slightly better seg/scissor icons * Add eraser * ability to switch segments * seg color / switcher * Fix vtk labelmap cache. * sidepanel should scroll if there's overflow * Use a fancier range slider * Slightly prettier buttons * Push in progress * A bit more reactive; handle no-meta * Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0 * chore: kickstart preview * Fix conflict issues * Refactor panel * Isolate increment functions * Wip segment table * Hide selector and add scroll to segmentation * Increase width of segment description * Hide not used items * Add new select for segmentations * Align ui * Fix default segmentation * Fix broken import test * Get measurements panel back and add spacing to grouped buttons * Hide brush and selector and refresh when switching segmentations * Add pointer events back and fix broken tests for measurement table * Update segment list when switching humbnails * CR Update: Minor UI adjustments * CR Update: Set active segment * Move components to components folder * Add new settings ui * Integrate configuration * Improve styles * Float numbers * Improve css * Refresh settings menu if side panel changed * Fix settings rendering logic and remove comments * Extract components * Remove not used tools * Remove non used extension * Use style variables and remove comments * Remove non used dep from lock * Remove tools * Remove segmentation from toolbar * Add todo and brushradius from config * Fix packagejson growcut import * Remove webpack config already defined in parent * Update package json description * Change component name to british english to us * Improve prop types * Rename cornerstone label map event * Scope css * Extract and add doc to helper * Update jsdocs for getDerivedDatasets * Add proptypes and cr updates * Update tablistitem proptypes * config is readonly, rollback destructuring * Remove event for side panel * Add jsdocs for util * Extract getimageid to studymetada * Use ohif log instead of console * Remove specific style from side panel * Fix default props for brush radius * Descructure configuration props from settings component to avoid invalid props * Update proptypes to be required (settings) * Update readme * Remove commandsmodule * Get configuration module inside the component * Set selected segment * Rename extension and use modality to filter * Fix for failing tests (#1423) * hello world * Finish rebase for Igor. * Re-fix cornerstoneTools version that got messed up in merge. * Fix reactivity of isDisabled, write implementation for the SEG panel. * Nuke yarn.lock to stack CST to 4.12.0 * Remove debugger statements. * fix: bump cornerstone-tools version to address toFixed issue * test: force tests for MISTER^MR to navigate to study directly * test: remove eraser tool test * test: count is off by one * test: don't save SR state for the time being * test: disable more tests Co-authored-by: James A. Petts <jamesapetts@gmail.com> Co-authored-by: dannyrb <danny.ri.brown@gmail.com> Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com> Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
72 lines
1.8 KiB
JavaScript
72 lines
1.8 KiB
JavaScript
import { MODULE_TYPES, utils } from '@ohif/core';
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import loadSegmentation from './loadSegmentation';
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// TODO: Should probably use dcmjs for this
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const SOP_CLASS_UIDS = {
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DICOM_SEG: '1.2.840.10008.5.1.4.1.1.66.4',
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};
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const sopClassUIDs = Object.values(SOP_CLASS_UIDS);
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// TODO: Handle the case where there is more than one SOP Class Handler for the
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// same SOP Class.
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const OHIFDicomSegSopClassHandler = {
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id: 'OHIFDicomSegSopClassHandler',
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type: MODULE_TYPES.SOP_CLASS_HANDLER,
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sopClassUIDs,
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getDisplaySetFromSeries: function(
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series,
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study,
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dicomWebClient,
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authorizationHeaders
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) {
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const instance = series.getFirstInstance();
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const metadata = instance.getData().metadata;
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const {
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SeriesDate,
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SeriesTime,
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SeriesDescription,
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FrameOfReferenceUID,
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SOPInstanceUID,
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SeriesInstanceUID,
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StudyInstanceUID,
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} = metadata;
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const segDisplaySet = {
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Modality: 'SEG',
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displaySetInstanceUID: utils.guid(),
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wadoRoot: study.getData().wadoRoot,
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wadoUri: instance.getData().wadouri,
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SOPInstanceUID,
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SeriesInstanceUID,
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StudyInstanceUID,
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FrameOfReferenceUID,
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authorizationHeaders,
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metadata,
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isDerived: true,
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referencedDisplaySetUID: null, // Assigned when loaded.
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labelmapIndex: null, // Assigned when loaded.
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isLoaded: false,
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SeriesDate,
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SeriesTime,
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SeriesDescription,
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};
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segDisplaySet.load = function(referencedDisplaySet, studies) {
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return loadSegmentation(
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segDisplaySet,
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referencedDisplaySet,
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studies
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).catch(error => {
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segDisplaySet.isLoaded = false;
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throw new Error(error);
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});
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};
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return segDisplaySet;
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},
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};
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export default OHIFDicomSegSopClassHandler;
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