Bill WallaceandClaude Opus 4.8 256b8347e7 fix(docs): remove stray tool-call tags breaking the MDX build (#6081)
This is a fix to pnpm deployment which needs testing as the final part of origin/master release
No functional changes

* fix(docs): remove stray tool-call tags breaking the MDX build

platform/docs/docs/migration-guide/3p12-to-3p13/build-tooling.md ended with
two orphan closing tags (leftover tool-call serialization artifacts):

  </content>
  </invoke>

Docusaurus compiles Markdown as MDX (JSX-aware), so the orphan closing tag
failed the docs build:

  MDX compilation failed ... Unexpected closing slash in tag, expected an
  open tag first (build-tooling.md line 402)

This was the remaining blocker for build-and-deploy-docs once the
--no-frozen-lockfile change let the install step succeed. A scan of the docs
tree found no other such artifacts. Verified locally: docusaurus build now
generates static files with no MDX errors.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* Update lockfile and avoid freshness check on every command

* fix(release): keep workspace:* in the repo, concretize only at publish

The release flow rewrote internal @ohif/* dependency specifiers to the concrete
version and committed them, so pnpm-lock.yaml (which records workspace links)
drifted from the manifests on every version bump. The resulting
ERR_PNPM_OUTDATED_LOCKFILE broke every frozen install: Netlify (viewer-dev),
the docs deploy, pnpm's pre-run deps check, and post-merge installs.

Keep workspace:* everywhere in the committed repo and move the concrete-version
substitution to publish time only:

- publish-version.mjs: bump each package's own `version` field only; stop
  rewriting @ohif/* dependency/peerDependency specifiers.
- publish-package.mjs: publish with `pnpm publish --no-git-checks` instead of
  `npm publish`. pnpm rewrites workspace:* to the exact version in the published
  tarball; npm would publish the literal "workspace:*", which npm/yarn consumers
  cannot resolve.
- One-time: revert the 25 workspace manifests' @ohif/* specifiers to workspace:*
  (version fields untouched) and regenerate pnpm-lock.yaml to match.

Because internal deps are workspace:* (links, not versions in the lockfile),
version bumps no longer change pnpm-lock.yaml, so it stays in sync and frozen
installs keep working.

Verified: `pnpm install --frozen-lockfile` passes, and `pnpm pack` of @ohif/core
emits a tarball whose @ohif/ui dependency is the exact version (3.13.0-beta.92),
not workspace:*.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs(ci): correct build-docs install comment for workspace:* release flow

publish-version.mjs no longer rewrites @ohif/* deps to concrete versions, so
the old comment was stale. Internal deps stay workspace:* and the lockfile
stays consistent; pnpm publish concretizes only the published tarball.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* ci(docs): use --frozen-lockfile now that the lockfile no longer drifts

With internal deps as workspace:* the lockfile stays in sync across version
bumps, so the docs deploy can install frozen -- failing fast on genuine
lockfile drift instead of silently reconciling. The --no-frozen-lockfile
workaround is no longer needed.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* ci: use --frozen-lockfile in CI install steps now that the lockfile is stable

Internal @ohif/* deps are workspace:* so pnpm-lock.yaml no longer drifts; the
UNIT_TESTS/BUILD/NPM_PUBLISH installs can run frozen and fail fast on genuine
drift. Kept --no-frozen-lockfile only where it is still required: the Dockerfile
(platform/docs is excluded from the build context) and the playwright CS3D-version
step (mutates @cornerstonejs versions before installing).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test: stability of seg load mpr test

* Better drag fix for crosshairs

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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OHIF Medical Imaging Viewer

The OHIF Viewer is a zero-footprint medical image viewer provided by the Open Health Imaging Foundation (OHIF). It is a configurable and extensible progressive web application with out-of-the-box support for image archives which support DICOMweb.


NPM version MIT License This project is using Percy.io for visual regression testing.

Measurement tracking Measurement Tracking Demo
Segmentations Labelmap Segmentations Demo
Hanging Protocols Fusion and Custom Hanging protocols Demo
Volume Rendering Volume Rendering Demo
PDF PDF Demo
RTSTRUCT RT STRUCT Demo
4D 4D Demo
VIDEO Video Demo
microscopy Slide Microscopy Demo
ECG ECG Waveform Demo

About

The OHIF Viewer can retrieve and load images from most sources and formats, render sets in 2D, 3D, and reconstructed representations; allows for the manipulation, annotation, and serialization of observations; supports internationalization, OpenID Connect, offline use, hotkeys, and many more features.

Almost everything offers some degree of customization and configuration. If it doesn't support something you need, we accept pull requests and have an ever improving Extension System.

Why Choose Us

Community & Experience

The OHIF Viewer is a collaborative effort that has served as the basis for many active, production, and FDA Cleared medical imaging viewers. It benefits from our extensive community's collective experience, and from the sponsored contributions of individuals, research groups, and commercial organizations.

Built to Adapt

After more than 8-years of integrating with many companies and organizations, The OHIF Viewer has been rebuilt from the ground up to better address the varying workflow and configuration needs of its many users. All of the Viewer's core features are built using its own extension system. The same extensibility that allows us to offer:

  • 2D and 3D medical image viewing
  • Multiplanar Reconstruction (MPR)
  • Maximum Intensity Project (MIP)
  • Whole slide microscopy viewing
  • PDF and Dicom Structured Report rendering
  • Segmentation rendering as labelmaps and contours
  • User Access Control (UAC)
  • Context specific toolbar and side panel content
  • and many others

Can be leveraged by you to customize the viewer for your workflow, and to add any new functionality you may need (and wish to maintain privately without forking).

Support

For commercial support, academic collaborations, and answers to common questions; please use Get Support to contact us.

Developing

Branches

master branch - The latest dev (beta) release

  • master - The latest dev release

This is typically where the latest development happens. Code that is in the master branch has passed code reviews and automated tests, but it may not be deemed ready for production. This branch usually contains the most recent changes and features being worked on by the development team. It's often the starting point for creating feature branches (where new features are developed) and hotfix branches (for urgent fixes).

Each package is tagged with beta version numbers, and published to npm such as @ohif/ui@3.6.0-beta.1

release/* branches - The latest stable releases

Once the master branch code reaches a stable, release-ready state, we conduct a comprehensive code review and QA testing. Upon approval, we create a new release branch from master. These branches represent the latest stable version considered ready for production.

For example, release/3.5 is the branch for version 3.5.0, and release/3.6 is for version 3.6.0. After each release, we wait a few days to ensure no critical bugs. If any are found, we fix them in the release branch and create a new release with a minor version bump, e.g., 3.5.1 in the release/3.5 branch.

Each package is tagged with version numbers and published to npm, such as @ohif/ui@3.5.0. Note that master is always ahead of the release branch. We publish docker builds for both beta and stable releases.

Here is a schematic representation of our development workflow:

alt text

Requirements

  • Yarn 1.20.0+
  • Node 18+
  • Yarn Workspaces should be enabled on your machine:
    • yarn config set workspaces-experimental true

Getting Started

  1. Fork this repository
  2. Clone your forked repository
    • git clone https://github.com/YOUR-USERNAME/Viewers.git
  3. Navigate to the cloned project's directory
  4. Add this repo as a remote named upstream
    • git remote add upstream https://github.com/OHIF/Viewers.git
  5. yarn install --frozen-lockfile to restore dependencies and link projects

:::danger In general run yarn install with the --frozen-lockfile flag to help avoid supply chain attacks by enforcing reproducible dependencies. That is, if the yarn.lock file is clean and does NOT reference compromised packages, then no compromised packages should land on your machine by using this flag. :::

To Develop

From this repository's root directory:

# Enable Yarn Workspaces
yarn config set workspaces-experimental true

# Restore dependencies
yarn install --frozen-lockfile

Cornerstone3D Integration Testing

OHIF's Playwright end-to-end tests can run against a CS3D branch or a published CS3D version, allowing changes that span both repositories to be validated together before merging.

Setting up an integration build

  1. Add the ohif-integration label to your OHIF pull request.
  2. In the PR body, add a line specifying the CS3D ref:
    CS3D_REF: feat/my-feature
    
    • Version ref (e.g. 4.19+, 4.18.2) — the workflow resolves it to an exact published version and swaps the CS3D dependency via npm.
    • Branch ref (e.g. main, cornerstonejs:feat/foo) — the workflow clones the branch, builds CS3D from source with bun run build:esm, and symlinks the built packages into OHIF's node_modules.
    • For forks, use the <owner>:<branch> format (e.g. myGithubUser:feat/foo).
    • If no CS3D_REF is specified, the default is 4.19+.
  3. The workflow can also be triggered manually via workflow_dispatch with a cs3d_ref input.

What happens in CI

The Playwright workflow runs two jobs:

Job Purpose
Playwright Tests Builds OHIF (with CS3D linked or version-swapped), runs the full Playwright suite, uploads test results and coverage, and deploys a Netlify preview when ohif-integration is active.
CS3D Branch Merge Guard A lightweight check that fails when the ohif-integration label is present and CS3D_REF points to a branch (not a version). This prevents merging while still letting the Playwright tests show green so you can see whether the code actually works.

Testing changes that span both repos

If a feature requires changes in both Cornerstone3D and OHIF:

  1. Create your feature branch in CS3D and push it.
  2. Create a matching branch in OHIF.
  3. Add the ohif-integration label to the OHIF pull request.
  4. In the PR body, add: CS3D_REF: <your-cs3d-branch>.
  5. Playwright tests will build CS3D from source, link it, and run the full suite. The merge guard will block merge until you switch to a published version — but you can see the test results and the preview deploy while iterating.
  6. Once the CS3D side is merged and published, update the PR body to reference the published version (e.g. CS3D_REF: 4.19+). The tests will run against the registry version and the merge guard will pass.

Preview deploys

When ohif-integration is active, the Playwright workflow also builds the OHIF viewer and deploys it to Netlify as a preview. This gives you a live URL to manually test the combined CS3D + OHIF changes without running anything locally.

For details on linking CS3D locally for development, see the Cornerstone3D README.

Commands

These commands are available from the root directory. Each project directory also supports a number of commands that can be found in their respective README.md and package.json files.

Yarn Commands Description
Develop
dev Default development experience for Viewer
dev:fast Our experimental fast dev mode that uses rsbuild instead of webpack
test:unit Jest multi-project test runner; overall coverage
Deploy
build* Builds production output for our PWA Viewer

* - For more information on different builds, check out our Deploy Docs

Project

The OHIF Medical Image Viewing Platform is maintained as a monorepo. This means that this repository, instead of containing a single project, contains many projects. If you explore our project structure, you'll see the following:

.
├── extensions               #
│   ├── _example             # Skeleton of example extension
│   ├── default              # basic set of useful functionalities (datasources, panels, etc)
│   ├── cornerstone       # image rendering and tools w/ Cornerstone3D
│   ├── cornerstone-dicom-sr # DICOM Structured Report rendering and export
│   ├── cornerstone-dicom-sr # DICOM Structured Report rendering and export
│   ├── cornerstone-dicom-seg # DICOM Segmentation rendering and export
│   ├── cornerstone-dicom-rt # DICOM RTSTRUCT rendering
│   ├── cornerstone-microscopy # Whole Slide Microscopy rendering
│   ├── dicom-pdf # PDF rendering
│   ├── dicom-video # DICOM RESTful Services
│   ├── measurement-tracking # Longitudinal measurement tracking
│   ├── tmtv # Total Metabolic Tumor Volume (TMTV) calculation
|

│
├── modes                    #
│   ├── _example             # Skeleton of example mode
│   ├── basic-dev-mode       # Basic development mode
│   ├── longitudinal         # Longitudinal mode (measurement tracking)
│   ├── tmtv       # Total Metabolic Tumor Volume (TMTV) calculation mode
│   └── microscopy          # Whole Slide Microscopy mode
│
├── platform                 #
│   ├── core                 # Business Logic
│   ├── i18n                 # Internationalization Support
│   ├── ui                   # React component library
│   ├── docs                 # Documentation
│   └── viewer               # Connects platform and extension projects
│
├── ...                      # misc. shared configuration
├── lerna.json               # MonoRepo (Lerna) settings
├── package.json             # Shared devDependencies and commands
└── README.md                # This file

Acknowledgments

To acknowledge the OHIF Viewer in an academic publication, please cite

Open Health Imaging Foundation Viewer: An Extensible Open-Source Framework for Building Web-Based Imaging Applications to Support Cancer Research

Erik Ziegler, Trinity Urban, Danny Brown, James Petts, Steve D. Pieper, Rob Lewis, Chris Hafey, and Gordon J. Harris

JCO Clinical Cancer Informatics, no. 4 (2020), 336-345, DOI: 10.1200/CCI.19.00131

Open-Access on Pubmed Central: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7259879/

or, for v1, please cite:

LesionTracker: Extensible Open-Source Zero-Footprint Web Viewer for Cancer Imaging Research and Clinical Trials

Trinity Urban, Erik Ziegler, Rob Lewis, Chris Hafey, Cheryl Sadow, Annick D. Van den Abbeele and Gordon J. Harris

Cancer Research, November 1 2017 (77) (21) e119-e122 DOI: 10.1158/0008-5472.CAN-17-0334

Note: If you use or find this repository helpful, please take the time to star this repository on GitHub. This is an easy way for us to assess adoption and it can help us obtain future funding for the project.

This work is supported primarily by the National Institutes of Health, National Cancer Institute, Informatics Technology for Cancer Research (ITCR) program, under a grant to Dr. Gordon Harris at Massachusetts General Hospital (U24 CA199460).

NCI Imaging Data Commons (IDC) project supported the development of new features and bug fixes marked with "IDC:priority", "IDC:candidate" or "IDC:collaboration". NCI Imaging Data Commons is supported by contract number 19X037Q from Leidos Biomedical Research under Task Order HHSN26100071 from NCI. IDC Viewer is a customized version of the OHIF Viewer.

This project is tested with BrowserStack. Thank you for supporting open-source!

License

MIT © OHIF

FOSSA Status

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Description
Our custom OHIF Viewer.
Readme MIT
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Languages
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JavaScript 18.4%
HTML 0.9%
CSS 0.9%
Shell 0.2%