import { api } from 'dicomweb-client'; import { mapParams, search as qidoSearch, seriesInStudy, processResults, processSeriesResults, } from './qido.js'; import dcm4cheeReject from './dcm4cheeReject'; import { DicomMetadataStore, IWebApiDataSource, utils, errorHandler, } from '@ohif/core'; import getImageId from './utils/getImageId'; import dcmjs from 'dcmjs'; import { retrieveStudyMetadata, deleteStudyMetadataPromise, } from './retrieveStudyMetadata.js'; import StaticWadoClient from './utils/StaticWadoClient.js'; const { DicomMetaDictionary, DicomDict } = dcmjs.data; const { naturalizeDataset, denaturalizeDataset } = DicomMetaDictionary; const { urlUtil } = utils; const ImplementationClassUID = '2.25.270695996825855179949881587723571202391.2.0.0'; const ImplementationVersionName = 'OHIF-VIEWER-2.0.0'; const EXPLICIT_VR_LITTLE_ENDIAN = '1.2.840.10008.1.2.1'; /** * * @param {string} name - Data source name * @param {string} wadoUriRoot - Legacy? (potentially unused/replaced) * @param {string} qidoRoot - Base URL to use for QIDO requests * @param {string} wadoRoot - Base URL to use for WADO requests * @param {boolean} qidoSupportsIncludeField - Whether QIDO supports the "Include" option to request additional fields in response * @param {string} imageRengering - wadors | ? (unsure of where/how this is used) * @param {string} thumbnailRendering - wadors | ? (unsure of where/how this is used) * @param {bool} supportsReject - Whether the server supports reject calls (i.e. DCM4CHEE) * @param {bool} lazyLoadStudy - "enableStudyLazyLoad"; Request series meta async instead of blocking */ function createDicomWebApi(dicomWebConfig, UserAuthenticationService) { const { qidoRoot, wadoRoot, enableStudyLazyLoad, supportsFuzzyMatching, supportsWildcard, supportsReject, staticWado, } = dicomWebConfig; const qidoConfig = { url: qidoRoot, staticWado, headers: UserAuthenticationService.getAuthorizationHeader(), errorInterceptor: errorHandler.getHTTPErrorHandler(), }; const wadoConfig = { url: wadoRoot, headers: UserAuthenticationService.getAuthorizationHeader(), errorInterceptor: errorHandler.getHTTPErrorHandler(), }; // TODO -> Two clients sucks, but its better than 1000. // TODO -> We'll need to merge auth later. const qidoDicomWebClient = staticWado ? new StaticWadoClient(qidoConfig) : new api.DICOMwebClient(qidoConfig); const wadoDicomWebClient = new api.DICOMwebClient(wadoConfig); const implementation = { initialize: ({ params, query }) => { const { StudyInstanceUIDs: paramsStudyInstanceUIDs } = params; const queryStudyInstanceUIDs = query.get('StudyInstanceUIDs'); const StudyInstanceUIDs = queryStudyInstanceUIDs || paramsStudyInstanceUIDs; const StudyInstanceUIDsAsArray = StudyInstanceUIDs && Array.isArray(StudyInstanceUIDs) ? StudyInstanceUIDs : [StudyInstanceUIDs]; return StudyInstanceUIDsAsArray; }, query: { studies: { mapParams: mapParams.bind(), search: async function(origParams) { const headers = UserAuthenticationService.getAuthorizationHeader(); if (headers) { qidoDicomWebClient.headers = headers; } const { studyInstanceUid, seriesInstanceUid, ...mappedParams } = mapParams(origParams, { supportsFuzzyMatching, supportsWildcard, }) || {}; const results = await qidoSearch( qidoDicomWebClient, undefined, undefined, mappedParams ); return processResults(results); }, processResults: processResults.bind(), }, series: { // mapParams: mapParams.bind(), search: async function(studyInstanceUid) { const headers = UserAuthenticationService.getAuthorizationHeader(); if (headers) { qidoDicomWebClient.headers = headers; } const results = await seriesInStudy( qidoDicomWebClient, studyInstanceUid ); return processSeriesResults(results); }, // processResults: processResults.bind(), }, instances: { search: (studyInstanceUid, queryParameters) => { const headers = UserAuthenticationService.getAuthorizationHeader(); if (headers) { qidoDicomWebClient.headers = headers; } qidoSearch.call( undefined, qidoDicomWebClient, studyInstanceUid, null, queryParameters ); }, }, }, retrieve: { /* Generates a URL that can be used for direct retrieve of the bulkdata */ directURL: (params) => { const { instance, tag = "PixelData", defaultPath = "/pixeldata", defaultType = "video/mp4" } = params; const { StudyInstanceUID, SeriesInstanceUID, SOPInstanceUID } = instance; // If the BulkDataURI isn't present, then assume it uses the pixeldata endpoint // The standard isn't quite clear on that, but appears to be what is expected const value = instance[tag]; const BulkDataURI = (value && value.BulkDataURI) || `series/${SeriesInstanceUID}/instances/${SOPInstanceUID}${defaultPath}`; const hasQuery = BulkDataURI.indexOf('?') != -1; const hasAccept = BulkDataURI.indexOf('accept=') != -1; const acceptUri = BulkDataURI + (hasAccept ? '' : (hasQuery ? '&' : '?') + `accept=${defaultType}`); if (BulkDataURI.indexOf('http') == 0) return acceptUri; if (BulkDataURI.indexOf('/') == 0) { return wadoRoot + acceptUri; } if (BulkDataURI.indexOf('series/') == 0) { return `${wadoRoot}/studies/${StudyInstanceUID}/${acceptUri}`; } if (BulkDataURI.indexOf('instances/') === 0) { return `${wadoRoot}/studies/${StudyInstanceUID}/series/${SeriesInstanceUID}/${acceptUri}`; } throw new Error('BulkDataURI in unknown format:' + BulkDataURI); }, series: { metadata: async ({ StudyInstanceUID, filters, sortCriteria, sortFunction, madeInClient = false, } = {}) => { const headers = UserAuthenticationService.getAuthorizationHeader(); if (headers) { wadoDicomWebClient.headers = headers; } if (!StudyInstanceUID) { throw new Error( 'Unable to query for SeriesMetadata without StudyInstanceUID' ); } // Get Series const { seriesSummaryMetadata, seriesPromises, } = await retrieveStudyMetadata( wadoDicomWebClient, StudyInstanceUID, enableStudyLazyLoad, filters, sortCriteria, sortFunction ); /** * naturalizes the dataset, and adds a retrieve bulkdata method * to any values containing BulkDataURI. * @param {*} instance * @returns naturalized dataset, with retrieveBulkData methods */ const addRetrieveBulkData = instance => { const naturalized = naturalizeDataset(instance); Object.keys(naturalized).forEach(key => { const value = naturalized[key]; // The value.Value will be set with the bulkdata read value // in which case it isn't necessary to re-read this. if (value && value.BulkDataURI && !value.Value) { // Provide a method to fetch bulkdata value.retrieveBulkData = () => { const options = { // The bulkdata fetches work with either multipart or // singlepart, so set multipart to false to let the server // decide which type to respond with. multipart: false, BulkDataURI: value.BulkDataURI, // The study instance UID is required if the bulkdata uri // is relative - that isn't disallowed by DICOMweb, but // isn't well specified in the standard, but is needed in // any implementation that stores static copies of the metadata StudyInstanceUID: naturalized.StudyInstanceUID, }; return qidoDicomWebClient .retrieveBulkData(options) .then(val => { const ret = (val && val[0]) || undefined; value.Value = ret; return ret; }); }; } }); return naturalized; }; // Async load series, store as retrieved function storeInstances(instances) { const naturalizedInstances = instances.map(addRetrieveBulkData); DicomMetadataStore.addInstances(naturalizedInstances, madeInClient); } function setSuccessFlag() { const study = DicomMetadataStore.getStudy( StudyInstanceUID, madeInClient ); study.isLoaded = true; } // Google Cloud Healthcare doesn't return StudyInstanceUID, so we need to add // it manually here seriesSummaryMetadata.forEach(aSeries => { aSeries.StudyInstanceUID = StudyInstanceUID; }); DicomMetadataStore.addSeriesMetadata( seriesSummaryMetadata, madeInClient ); const numberOfSeries = seriesPromises.length; seriesPromises.forEach(async (seriesPromise, index) => { const instances = await seriesPromise; storeInstances(instances); if (index === numberOfSeries - 1) setSuccessFlag(); }); }, }, }, store: { dicom: async dataset => { const headers = UserAuthenticationService.getAuthorizationHeader(); if (headers) { wadoDicomWebClient.headers = headers; } const meta = { FileMetaInformationVersion: dataset._meta.FileMetaInformationVersion.Value, MediaStorageSOPClassUID: dataset.SOPClassUID, MediaStorageSOPInstanceUID: dataset.SOPInstanceUID, TransferSyntaxUID: EXPLICIT_VR_LITTLE_ENDIAN, ImplementationClassUID, ImplementationVersionName, }; const denaturalized = denaturalizeDataset(meta); const dicomDict = new DicomDict(denaturalized); dicomDict.dict = denaturalizeDataset(dataset); const part10Buffer = dicomDict.write(); const options = { datasets: [part10Buffer], }; await wadoDicomWebClient.storeInstances(options); }, }, deleteStudyMetadataPromise, getImageIdsForDisplaySet(displaySet) { const images = displaySet.images; const imageIds = []; if (!images) { return imageIds; } displaySet.images.forEach(instance => { const NumberOfFrames = instance.NumberOfFrames; if (NumberOfFrames > 1) { for (let i = 0; i < NumberOfFrames; i++) { const imageId = this.getImageIdsForInstance({ instance, frame: i, }); imageIds.push(imageId); } } else { const imageId = this.getImageIdsForInstance({ instance }); imageIds.push(imageId); } }); return imageIds; }, getImageIdsForInstance({ instance, frame }) { const imageIds = getImageId({ instance, frame, config: dicomWebConfig, }); return imageIds; }, }; if (supportsReject) { implementation.reject = dcm4cheeReject(wadoRoot); } return IWebApiDataSource.create(implementation); } export { createDicomWebApi };