import { Meteor } from 'meteor/meteor'; import { Template } from 'meteor/templating'; import { Tracker } from 'meteor/tracker'; import { Session } from 'meteor/session'; import { ReactiveDict } from 'meteor/reactive-dict'; import { _ } from 'meteor/underscore'; import { $ } from 'meteor/jquery'; import { OHIF } from 'meteor/ohif:core'; import 'meteor/ohif:cornerstone'; import 'meteor/ohif:viewerbase'; import 'meteor/ohif:metadata'; Meteor.startup(() => { Session.set('TimepointsReady', false); Session.set('MeasurementsReady', false); OHIF.viewer.stackImagePositionOffsetSynchronizer = new OHIF.viewerbase.StackImagePositionOffsetSynchronizer(); // Create the synchronizer used to update reference lines OHIF.viewer.updateImageSynchronizer = new cornerstoneTools.Synchronizer('CornerstoneNewImage', cornerstoneTools.updateImageSynchronizer); OHIF.viewer.metadataProvider = OHIF.cornerstone.metadataProvider; // Metadata configuration const metadataProvider = OHIF.viewer.metadataProvider; cornerstoneTools.metaData.addProvider(metadataProvider.getProvider()); // Target tools configuration OHIF.lesiontracker.configureTargetToolsHandles(); }); Template.viewer.onCreated(() => { Session.set('ViewerReady', false); const toolManager = OHIF.viewerbase.toolManager; ViewerData = window.ViewerData || ViewerData; const instance = Template.instance(); const { TimepointApi, MeasurementApi, ConformanceCriteria } = OHIF.measurements; const currentTimepointId = instance.data.currentTimepointId; const timepointApi = new TimepointApi(currentTimepointId); const measurementApi = new MeasurementApi(timepointApi); const conformanceCriteria = new ConformanceCriteria(measurementApi, timepointApi); const apis = { timepointApi, measurementApi, conformanceCriteria }; Object.assign(OHIF.viewer, apis); Object.assign(instance.data, apis); ValidationErrors.remove({}); instance.data.state = new ReactiveDict(); instance.data.state.set('leftSidebar', Session.get('leftSidebar')); instance.data.state.set('rightSidebar', Session.get('rightSidebar')); const contentId = instance.data.contentId; const viewportUtils = OHIF.viewerbase.viewportUtils; OHIF.viewer.functionList = $.extend(OHIF.viewer.functionList, { toggleLesionTrackerTools: OHIF.lesiontracker.toggleLesionTrackerTools, bidirectional: () => { // Used for hotkeys OHIF.viewerbase.toolManager.setActiveTool('bidirectional'); }, nonTarget: () => { // Used for hotkeys OHIF.viewerbase.toolManager.setActiveTool('nonTarget'); }, // Viewport functions toggleCineDialog: viewportUtils.toggleCineDialog, clearTools: viewportUtils.clearTools, resetViewport: viewportUtils.resetViewport, invert: viewportUtils.invert, flipV: viewportUtils.flipV, flipH: viewportUtils.flipH, rotateL: viewportUtils.rotateL, rotateR: viewportUtils.rotateR, linkStackScroll: viewportUtils.linkStackScroll }); if (ViewerData[contentId].loadedSeriesData) { OHIF.log.info('Reloading previous loadedSeriesData'); OHIF.viewer.loadedSeriesData = ViewerData[contentId].loadedSeriesData; } else { OHIF.log.info('Setting default ViewerData'); OHIF.viewer.loadedSeriesData = {}; ViewerData[contentId].loadedSeriesData = {}; Session.setPersistent('ViewerData', ViewerData); } Session.set('activeViewport', ViewerData[contentId].activeViewport || false); // Set lesion tool buttons as disabled if pixel spacing is not available for active element instance.autorun(OHIF.lesiontracker.pixelSpacingAutorunCheck); // @TypeSafeStudies // Clears OHIF.viewer.Studies collection OHIF.viewer.Studies.removeAll(); // @TypeSafeStudies // Clears OHIF.viewer.StudyMetadataList collection OHIF.viewer.StudyMetadataList.removeAll(); instance.data.studies.forEach(study => { const studyMetadata = new OHIF.metadata.StudyMetadata(study, study.studyInstanceUid); const displaySets = OHIF.viewerbase.sortingManager.getDisplaySets(studyMetadata); studyMetadata.setDisplaySets(displaySets); study.selected = true; study.displaySets = displaySets; OHIF.viewer.Studies.insert(study); OHIF.viewer.StudyMetadataList.insert(studyMetadata); }); const patientId = instance.data.studies[0].patientId; // LT-382: Preventing HP to keep identifying studies in timepoints that might be removed instance.data.studies.forEach(study => (delete study.timepointType)); // TODO: Consider combining the retrieval calls into one? const timepointsPromise = timepointApi.retrieveTimepoints(patientId); timepointsPromise.then(() => { const timepoints = timepointApi.all(); // Set timepointType in studies to be used in hanging protocol engine timepoints.forEach(timepoint => { timepoint.studyInstanceUids.forEach(studyInstanceUid => { const study = _.find(instance.data.studies, element => { return element.studyInstanceUid === studyInstanceUid; }); if (!study) { return; } // @TODO: Maybe this should be a setCustomAttribute? study.timepointType = timepoint.timepointType; }); }); Session.set('TimepointsReady', true); const timepointIds = timepoints.map(t => t.timepointId); const measurementsPromise = measurementApi.retrieveMeasurements(patientId, timepointIds); measurementsPromise.then(() => { Session.set('MeasurementsReady', true); measurementApi.syncMeasurementsAndToolData(); }); }); // Provide the necessary data to the Measurement API and Timepoint API const prior = timepointApi.prior(); if (prior) { measurementApi.priorTimepointId = prior.timepointId; } if (instance.data.currentTimepointId) { // Enable Lesion Tracker Tools if the opened study is associated OHIF.lesiontracker.toggleLesionTrackerToolsButtons(true); } else { // Disable Lesion Tracker Tools if the opened study is not associated OHIF.lesiontracker.toggleLesionTrackerToolsButtons(false); } let firstMeasurementActivated = false; instance.autorun(() => { if (!Session.get('TimepointsReady') || !Session.get('MeasurementsReady') || !Session.get('ViewerReady') || firstMeasurementActivated) { return; } // Find and activate the first measurement by Lesion Number // NOTE: This is inefficient, we should be using a hanging protocol // to hang the first measurement's imageId immediately, rather // than changing images after initial loading... const config = OHIF.measurements.MeasurementApi.getConfiguration(); const tools = config.measurementTools[0].childTools; const firstTool = tools[Object.keys(tools)[0]]; const measurementTypeId = firstTool.id; const collection = measurementApi.tools[measurementTypeId]; const sorting = { sort: { measurementNumber: -1 } }; const data = collection.find({}, sorting).fetch(); const current = timepointApi.current(); if (!current) { return; } let timepoints = [current]; const prior = timepointApi.prior(); if (prior) { timepoints.push(prior); } // TODO: Clean this up, it's probably an inefficient way to get what we need const groupObject = _.groupBy(data, m => m.measurementNumber); // Reformat the data const rows = Object.keys(groupObject).map(key => ({ measurementTypeId: measurementTypeId, measurementNumber: key, entries: groupObject[key] })); const rowItem = rows[0]; // Activate the first lesion if (rowItem) { OHIF.measurements.jumpToRowItem(rowItem, timepoints); } firstMeasurementActivated = true; }); }); /** * Sets sidebar configuration and active tool based on viewer template instance * @param {Object} instance Template instance for viewer template */ const setActiveToolAndSidebar = () => { const instance = Template.instance(); const { studies, currentTimepointId, measurementApi, timepointIds } = instance.data; // Default actions for Associated Studies if (currentTimepointId) { // Follow-up studies: same as the first measurement in the table // Baseline studies: target-tool if (studies[0]) { let activeTool; // In follow-ups, get the baseline timepointId const timepointId = timepointIds.find(id => id !== currentTimepointId); // Follow-up studies if (studies[0].timepointType === 'followup' && timepointId) { const measurementTools = OHIF.measurements.MeasurementApi.getConfiguration().measurementTools; // Create list of measurement tools const measurementTypes = measurementTools.map( tool => { const { id, cornerstoneToolType } = tool; return { id, cornerstoneToolType }; } ); // Iterate over each measurement tool to find the first baseline // measurement. If so, stops the loop and prevent fetching from all // collections measurementTypes.every(({ id, cornerstoneToolType }) => { // Get measurement if (measurementApi[id]) { const measurement = measurementApi[id].findOne({ timepointId }); // Found a measurement, save tool and stop loop if (measurement) { activeTool = cornerstoneToolType; return false; } } return true; }); } // If not set, for associated studies default is target-tool OHIF.viewerbase.toolManager.setActiveTool(activeTool || 'bidirectional'); } // Toggle Measurement Table if (instance.data.state) { instance.data.state.set('rightSidebar', 'measurements'); } } // Hide as default for single study else { if (instance.data.state) { instance.data.state.set('rightSidebar', null); } } }; /** * Inits OHIF Hanging Protocol's onReady. * It waits for OHIF Hanging Protocol to be ready to instantiate the ProtocolEngine * Hanging Protocol will use OHIF LayoutManager to render viewports properly */ const initHangingProtocol = () => { // When Hanging Protocol is ready HP.ProtocolStore.onReady(() => { setActiveToolAndSidebar(); // Gets all StudyMetadata objects: necessary for Hanging Protocol to access study metadata const studyMetadataList = OHIF.viewer.StudyMetadataList.all(); // Caches Layout Manager: Hanging Protocol uses it for layout management according to current protocol const layoutManager = OHIF.viewerbase.layoutManager; // Instantiate StudyMetadataSource: necessary for Hanging Protocol to get study metadata const studyMetadataSource = new StudyList.classes.OHIFStudyMetadataSource(); // Creates Protocol Engine object with required arguments const ProtocolEngine = new HP.ProtocolEngine(layoutManager, studyMetadataList, [], studyMetadataSource); // Sets up Hanging Protocol engine HP.setEngine(ProtocolEngine); Session.set('ViewerReady', true); }); }; Template.viewer.onRendered(function() { this.autorun(() => { // To make sure ohif viewerMain is rendered before initializing Hanging Protocols const isOHIFViewerMainRendered = Session.get('OHIFViewerMainRendered'); // To avoid first run if (isOHIFViewerMainRendered) { // To run only when ViewerMainRendered dependency has changed. // because initHangingProtocol can have other reactive components Tracker.nonreactive(initHangingProtocol); } }); }); Template.viewer.helpers({ dataSourcesReady() { // TODO: Find a better way to do this const ready = Session.get('TimepointsReady') && Session.get('MeasurementsReady'); OHIF.log.info('dataSourcesReady? : ' + ready); return ready; } }); Template.viewer.events({ 'CornerstoneToolsMeasurementAdded .imageViewerViewport'(event, instance, eventData) { OHIF.measurements.MeasurementHandlers.onAdded(event, instance, eventData); }, 'CornerstoneToolsMeasurementModified .imageViewerViewport'(event, instance, eventData) { OHIF.measurements.MeasurementHandlers.onModified(event, instance, eventData); }, 'CornerstoneToolsMeasurementRemoved .imageViewerViewport'(event, instance, eventData) { OHIF.measurements.MeasurementHandlers.onRemoved(event, instance, eventData); } }); Template.viewer.onDestroyed(() => { Session.set('ViewerMainReady', false); Session.set('TimepointsReady', false); Session.set('MeasurementsReady', false); OHIF.viewer.stackImagePositionOffsetSynchronizer.deactivate(); });