Compare commits

..
Author SHA1 Message Date
ohif-bot 395894c6a9 chore(version): Update package versions [skip ci] 2024-05-29 15:50:43 +00:00
ohif-bot 8c25e7d557 chore(version): version.json [skip ci] 2024-05-29 15:50:36 +00:00
Bill Wallace 18ac08ed86 feat(hp): Add displayArea option for Hanging protocols and example with Mamo(#3808) 2024-05-29 11:31:09 -04:00
ohif-bot cb30b97610 chore(version): Update package versions [skip ci] 2024-05-29 14:09:04 +00:00
ohif-bot 22d5e51751 chore(version): version.json [skip ci] 2024-05-29 14:08:56 +00:00
Alireza 75a71db7f8 fix(ultrasound): Upgrade cornerstone3D version to resolve coloring issues (#4181) 2024-05-29 09:57:50 -04:00
ohif-bot c6a3ce4804 chore(version): Update package versions [skip ci] 2024-05-29 13:24:13 +00:00
ohif-bot a389daff2f chore(version): version.json [skip ci] 2024-05-29 13:24:05 +00:00
Ibrahim 18686c2caf feat(measurements): show untracked measurements in measurement panel under additional findings (#4160) 2024-05-29 09:12:39 -04:00
ohif-bot 07eb3c527d chore(version): Update package versions [skip ci] 2024-05-28 15:25:49 +00:00
ohif-bot 96860292ea chore(version): version.json [skip ci] 2024-05-28 15:25:39 +00:00
IbrahimandAlireza 7745c092bb fix(rt): dont convert to volume for RTSTRUCT (#4157)
Co-authored-by: Alireza <ar.sedghi@gmail.com>
2024-05-28 11:13:14 -04:00
ohif-bot b0af8ec553 chore(version): Update package versions [skip ci] 2024-05-27 18:41:10 +00:00
ohif-bot 2114ffff41 chore(version): version.json [skip ci] 2024-05-27 18:41:02 +00:00
AlirezaandIbrahimCSAE 70f2c797f4 feat(ui): move to React 18 and base for using shadcn/ui (#4174)
Co-authored-by: IbrahimCSAE <ibrahim.mdev@gmail.com>
2024-05-27 14:30:25 -04:00
578 changed files with 8777 additions and 2455 deletions

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+7
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@@ -42,6 +42,7 @@ jobs:
###
UNIT_TESTS:
<<: *defaults
resource_class: large
steps:
# Update yarn
- run: yarn -v
@@ -98,6 +99,7 @@ jobs:
###
BUILD:
<<: *defaults
resource_class: large
steps:
# Checkout code and ALL Git Tags
- checkout
@@ -146,6 +148,7 @@ jobs:
# just to make sure later on we can publish them
BUILD_PACKAGES_QUICK:
<<: *defaults
resource_class: large
steps:
- run: yarn -v
# Checkout code and ALL Git Tags
@@ -195,6 +198,7 @@ jobs:
###
NPM_PUBLISH:
<<: *defaults
resource_class: large
steps:
- run: yarn -v
# Checkout code and ALL Git Tags
@@ -264,6 +268,7 @@ jobs:
DOCKER_RELEASE_PUBLISH:
<<: *defaults
resource_class: large
steps:
- attach_workspace:
at: ~/repo
@@ -293,6 +298,7 @@ jobs:
DOCKER_BETA_PUBLISH:
<<: *defaults
resource_class: large
steps:
- attach_workspace:
at: ~/repo
@@ -397,6 +403,7 @@ jobs:
default: ''
description: Directory containing package.json
type: string
resource_class: large
steps:
- cypress/install:
cypress-cache-key: << parameters.cypress-cache-key >>
+32
View File
@@ -98,6 +98,38 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
module: {
noParse: [/(codec)/, /(dicomicc)/],
rules: [
{
test: /\.svg?$/,
oneOf: [
{
use: [
{
loader: '@svgr/webpack',
options: {
svgoConfig: {
plugins: [
{
name: 'preset-default',
params: {
overrides: {
removeViewBox: false
},
},
},
]
},
prettier: false,
svgo: true,
titleProp: true,
},
},
],
issuer: {
and: [/\.(ts|tsx|js|jsx|md|mdx)$/],
},
},
],
},
{
test: /\.js$/,
enforce: 'pre',
+55
View File
@@ -3,6 +3,61 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.9.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.25...v3.9.0-beta.26) (2024-05-29)
### Features
* **hp:** Add displayArea option for Hanging protocols and example with Mamo([#3808](https://github.com/OHIF/Viewers/issues/3808)) ([18ac08e](https://github.com/OHIF/Viewers/commit/18ac08ed860d119721c52e4ffc270332259100b6))
# [3.9.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.24...v3.9.0-beta.25) (2024-05-29)
### Bug Fixes
* **ultrasound:** Upgrade cornerstone3D version to resolve coloring issues ([#4181](https://github.com/OHIF/Viewers/issues/4181)) ([75a71db](https://github.com/OHIF/Viewers/commit/75a71db7f89840250ad1c2b35df5a35aceb8be7d))
# [3.9.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.23...v3.9.0-beta.24) (2024-05-29)
### Features
* **measurements:** show untracked measurements in measurement panel under additional findings ([#4160](https://github.com/OHIF/Viewers/issues/4160)) ([18686c2](https://github.com/OHIF/Viewers/commit/18686c2caf13ede3e881303100bd4cc34b8b135f))
# [3.9.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.22...v3.9.0-beta.23) (2024-05-28)
### Bug Fixes
* **rt:** dont convert to volume for RTSTRUCT ([#4157](https://github.com/OHIF/Viewers/issues/4157)) ([7745c09](https://github.com/OHIF/Viewers/commit/7745c092bb3edf0090f32fbbbae2f0776128d5a2))
# [3.9.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.21...v3.9.0-beta.22) (2024-05-27)
### Features
* **ui:** move to React 18 and base for using shadcn/ui ([#4174](https://github.com/OHIF/Viewers/issues/4174)) ([70f2c79](https://github.com/OHIF/Viewers/commit/70f2c797f42af603d7ea0eb8d23b4103aba66f77))
# [3.9.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.20...v3.9.0-beta.21) (2024-05-24)
-1
View File
@@ -51,7 +51,6 @@ provided by the <a href="https://ohif.org/">Open Health Imaging Foundation (OHIF
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-video.webp?raw=true" alt="VIDEO" width="350"/> | Video | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=2.25.96975534054447904995905761963464388233) |
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/microscopy.webp?raw=true" alt="microscopy" width="350"/> | Slide Microscopy | [Demo](https://viewer.ohif.org/microscopy?StudyInstanceUIDs=2.25.141277760791347900862109212450152067508) |
## About
The OHIF Viewer can retrieve
+1 -17
View File
@@ -5,23 +5,6 @@ module.exports = {
babelrcRoots: ['./platform/*', './extensions/*', './modes/*'],
presets: ['@babel/preset-env', '@babel/preset-react', '@babel/preset-typescript'],
plugins: [
[
'inline-react-svg',
{
svgo: {
plugins: [
{
name: 'preset-default',
params: {
overrides: {
removeViewBox: false,
},
},
},
],
},
},
],
['@babel/plugin-proposal-class-properties', { loose: true }],
'@babel/plugin-transform-typescript',
['@babel/plugin-proposal-private-property-in-object', { loose: true }],
@@ -49,6 +32,7 @@ module.exports = {
'@babel/transform-destructuring',
'@babel/plugin-transform-runtime',
'@babel/plugin-transform-typescript',
'@babel/plugin-transform-class-static-block',
],
},
production: {
+1 -1
View File
@@ -1 +1 @@
8960b89911a9342d93bf1a62bec97a696f101fd4
18ac08ed860d119721c52e4ffc270332259100b6
@@ -3,6 +3,52 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.9.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.25...v3.9.0-beta.26) (2024-05-29)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.9.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.24...v3.9.0-beta.25) (2024-05-29)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.9.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.23...v3.9.0-beta.24) (2024-05-29)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
# [3.9.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.22...v3.9.0-beta.23) (2024-05-28)
### Bug Fixes
* **rt:** dont convert to volume for RTSTRUCT ([#4157](https://github.com/OHIF/Viewers/issues/4157)) ([7745c09](https://github.com/OHIF/Viewers/commit/7745c092bb3edf0090f32fbbbae2f0776128d5a2))
# [3.9.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.21...v3.9.0-beta.22) (2024-05-27)
### Features
* **ui:** move to React 18 and base for using shadcn/ui ([#4174](https://github.com/OHIF/Viewers/issues/4174)) ([70f2c79](https://github.com/OHIF/Viewers/commit/70f2c797f42af603d7ea0eb8d23b4103aba66f77))
# [3.9.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.20...v3.9.0-beta.21) (2024-05-24)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-rt
@@ -1,5 +1,5 @@
module.exports = {
plugins: ['inline-react-svg', '@babel/plugin-proposal-class-properties'],
plugins: ['@babel/plugin-proposal-class-properties'],
env: {
test: {
presets: [
+7 -7
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone-dicom-rt",
"version": "3.9.0-beta.21",
"version": "3.9.0-beta.26",
"description": "DICOM RT read workflow",
"author": "OHIF",
"license": "MIT",
@@ -33,13 +33,13 @@
"start": "yarn run dev"
},
"peerDependencies": {
"@ohif/core": "3.9.0-beta.21",
"@ohif/extension-cornerstone": "3.9.0-beta.21",
"@ohif/extension-default": "3.9.0-beta.21",
"@ohif/i18n": "3.9.0-beta.21",
"@ohif/core": "3.9.0-beta.26",
"@ohif/extension-cornerstone": "3.9.0-beta.26",
"@ohif/extension-default": "3.9.0-beta.26",
"@ohif/i18n": "3.9.0-beta.26",
"prop-types": "^15.6.2",
"react": "^17.0.2",
"react-dom": "^17.0.2",
"react": "^18.3.1",
"react-dom": "^18.3.1",
"react-i18next": "^10.11.0",
"react-router": "^6.3.0",
"react-router-dom": "^6.3.0"
@@ -111,7 +111,7 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
{...props}
displaySets={[referencedDisplaySet, rtDisplaySet]}
viewportOptions={{
viewportType: 'volume',
viewportType: 'stack',
toolGroupId: toolGroupId,
orientation: viewportOptions.orientation,
viewportId: viewportOptions.viewportId,
@@ -358,11 +358,6 @@ OHIFCornerstoneRTViewport.propTypes = {
viewportId: PropTypes.string.isRequired,
dataSource: PropTypes.object,
children: PropTypes.node,
customProps: PropTypes.object,
};
OHIFCornerstoneRTViewport.defaultProps = {
customProps: {},
};
function _getReferencedDisplaySetMetadata(referencedDisplaySet) {
@@ -3,6 +3,58 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.9.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.25...v3.9.0-beta.26) (2024-05-29)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
# [3.9.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.24...v3.9.0-beta.25) (2024-05-29)
### Bug Fixes
* **ultrasound:** Upgrade cornerstone3D version to resolve coloring issues ([#4181](https://github.com/OHIF/Viewers/issues/4181)) ([75a71db](https://github.com/OHIF/Viewers/commit/75a71db7f89840250ad1c2b35df5a35aceb8be7d))
# [3.9.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.23...v3.9.0-beta.24) (2024-05-29)
### Features
* **measurements:** show untracked measurements in measurement panel under additional findings ([#4160](https://github.com/OHIF/Viewers/issues/4160)) ([18686c2](https://github.com/OHIF/Viewers/commit/18686c2caf13ede3e881303100bd4cc34b8b135f))
# [3.9.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.22...v3.9.0-beta.23) (2024-05-28)
### Bug Fixes
* **rt:** dont convert to volume for RTSTRUCT ([#4157](https://github.com/OHIF/Viewers/issues/4157)) ([7745c09](https://github.com/OHIF/Viewers/commit/7745c092bb3edf0090f32fbbbae2f0776128d5a2))
# [3.9.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.21...v3.9.0-beta.22) (2024-05-27)
### Features
* **ui:** move to React 18 and base for using shadcn/ui ([#4174](https://github.com/OHIF/Viewers/issues/4174)) ([70f2c79](https://github.com/OHIF/Viewers/commit/70f2c797f42af603d7ea0eb8d23b4103aba66f77))
# [3.9.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.20...v3.9.0-beta.21) (2024-05-24)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-seg
@@ -1,5 +1,5 @@
module.exports = {
plugins: ['inline-react-svg', '@babel/plugin-proposal-class-properties'],
plugins: ['@babel/plugin-proposal-class-properties'],
env: {
test: {
presets: [
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone-dicom-seg",
"version": "3.9.0-beta.21",
"version": "3.9.0-beta.26",
"description": "DICOM SEG read workflow",
"author": "OHIF",
"license": "MIT",
@@ -33,21 +33,21 @@
"start": "yarn run dev"
},
"peerDependencies": {
"@ohif/core": "3.9.0-beta.21",
"@ohif/extension-cornerstone": "3.9.0-beta.21",
"@ohif/extension-default": "3.9.0-beta.21",
"@ohif/i18n": "3.9.0-beta.21",
"@ohif/core": "3.9.0-beta.26",
"@ohif/extension-cornerstone": "3.9.0-beta.26",
"@ohif/extension-default": "3.9.0-beta.26",
"@ohif/i18n": "3.9.0-beta.26",
"prop-types": "^15.6.2",
"react": "^17.0.2",
"react-dom": "^17.0.2",
"react": "^18.3.1",
"react-dom": "^18.3.1",
"react-i18next": "^12.2.2",
"react-router": "^6.8.1",
"react-router-dom": "^6.8.1"
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^1.74.7",
"@cornerstonejs/core": "^1.74.7",
"@cornerstonejs/adapters": "^1.77.0",
"@cornerstonejs/core": "^1.77.0",
"@kitware/vtk.js": "30.4.1",
"react-color": "^2.19.3"
}
@@ -213,7 +213,7 @@ const commandsModule = ({
updateViewportsForSegmentationRendering({
viewportId,
servicesManager,
referencedDisplaySetInstanceUID: displaySet.referencedDisplaySetInstanceUID,
displaySet,
loadFn: async () => {
const segDisplaySet = displaySet;
const suppressEvents = false;
@@ -10,7 +10,7 @@ import { Enums, cache } from '@cornerstonejs/core';
* @param params.viewportId - ID of the viewport to be updated.
* @param params.loadFn - Function to load the segmentation data.
* @param params.servicesManager - The services manager.
* @param params.referencedDisplaySetInstanceUID - Optional UID for the referenced display set instance.
* @param params.displaySet - the display set.
*
* @returns Returns true upon successful update of viewports for segmentation rendering.
*/
@@ -18,12 +18,12 @@ async function updateViewportsForSegmentationRendering({
viewportId,
loadFn,
servicesManager,
referencedDisplaySetInstanceUID,
displaySet,
}: {
viewportId: string;
loadFn: () => Promise<string>;
servicesManager: AppTypes.ServicesManager;
referencedDisplaySetInstanceUID?: string;
displaySet?: any;
}) {
const { cornerstoneViewportService, segmentationService, viewportGridService } =
servicesManager.services;
@@ -31,13 +31,13 @@ async function updateViewportsForSegmentationRendering({
const viewport = getTargetViewport({ viewportId, viewportGridService });
const targetViewportId = viewport.viewportOptions.viewportId;
referencedDisplaySetInstanceUID =
referencedDisplaySetInstanceUID || viewport?.displaySetInstanceUIDs[0];
const referencedDisplaySetInstanceUID =
displaySet?.referencedDisplaySetInstanceUID || viewport?.displaySetInstanceUIDs[0];
const updatedViewports = getUpdatedViewportsForSegmentation({
servicesManager,
viewportId,
referencedDisplaySetInstanceUID,
displaySet,
});
// create Segmentation callback which needs to be waited until
@@ -56,7 +56,7 @@ async function updateViewportsForSegmentationRendering({
updatedViewports.forEach(async viewport => {
viewport.viewportOptions = {
...viewport.viewportOptions,
viewportType: 'volume',
viewportType: displaySet?.Modality === 'RTSTRUCT' ? 'stack' : 'volume',
needsRerendering: true,
};
const viewportId = viewport.viewportId;
@@ -66,7 +66,7 @@ async function updateViewportsForSegmentationRendering({
// only run the createSegmentationForVolume for the targetViewportId
// since the rest will get handled by cornerstoneViewportService
if (volumeExists && viewportId === targetViewportId) {
if ((volumeExists || displaySet.Modality === 'RTSTRUCT') && viewportId === targetViewportId) {
await createSegmentationForVolume();
return;
}
@@ -126,14 +126,14 @@ const getTargetViewport = ({ viewportId, viewportGridService }) => {
* @param {Object} params - Parameters for the function.
* @param params.viewportId - the ID of the viewport to be updated.
* @param params.servicesManager - The services manager
* @param params.referencedDisplaySetInstanceUID - Optional UID for the referenced display set instance.
* @param params.displaySet - the display set.
*
* @returns {Array} Returns an array of viewports that require updates for segmentation rendering.
*/
function getUpdatedViewportsForSegmentation({
viewportId,
servicesManager,
referencedDisplaySetInstanceUID,
displaySet,
}: withAppTypes) {
const { hangingProtocolService, displaySetService, segmentationService, viewportGridService } =
servicesManager.services;
@@ -146,7 +146,7 @@ function getUpdatedViewportsForSegmentation({
const displaySetInstanceUIDs = viewports.get(targetViewportId).displaySetInstanceUIDs;
const referenceDisplaySetInstanceUID =
referencedDisplaySetInstanceUID || displaySetInstanceUIDs[0];
displaySet?.referencedDisplaySetInstanceUID || displaySetInstanceUIDs[0];
const referencedDisplaySet = displaySetService.getDisplaySetByUID(referenceDisplaySetInstanceUID);
const segmentationFrameOfReferenceUID = referencedDisplaySet.instances[0].FrameOfReferenceUID;
@@ -175,7 +175,7 @@ function getUpdatedViewportsForSegmentation({
viewportId,
displaySetInstanceUIDs: viewport.displaySetInstanceUIDs,
viewportOptions: {
viewportType: 'volume',
viewportType: displaySet.Modality === 'RTSTRUCT' ? 'stack' : 'volume',
needsRerendering: true,
},
});
@@ -367,11 +367,6 @@ OHIFCornerstoneSEGViewport.propTypes = {
viewportId: PropTypes.string.isRequired,
dataSource: PropTypes.object,
children: PropTypes.node,
customProps: PropTypes.object,
};
OHIFCornerstoneSEGViewport.defaultProps = {
customProps: {},
};
function _getReferencedDisplaySetMetadata(referencedDisplaySet, segDisplaySet) {
@@ -3,6 +3,55 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.9.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.25...v3.9.0-beta.26) (2024-05-29)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.9.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.24...v3.9.0-beta.25) (2024-05-29)
### Bug Fixes
* **ultrasound:** Upgrade cornerstone3D version to resolve coloring issues ([#4181](https://github.com/OHIF/Viewers/issues/4181)) ([75a71db](https://github.com/OHIF/Viewers/commit/75a71db7f89840250ad1c2b35df5a35aceb8be7d))
# [3.9.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.23...v3.9.0-beta.24) (2024-05-29)
### Features
* **measurements:** show untracked measurements in measurement panel under additional findings ([#4160](https://github.com/OHIF/Viewers/issues/4160)) ([18686c2](https://github.com/OHIF/Viewers/commit/18686c2caf13ede3e881303100bd4cc34b8b135f))
# [3.9.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.22...v3.9.0-beta.23) (2024-05-28)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
# [3.9.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.21...v3.9.0-beta.22) (2024-05-27)
### Features
* **ui:** move to React 18 and base for using shadcn/ui ([#4174](https://github.com/OHIF/Viewers/issues/4174)) ([70f2c79](https://github.com/OHIF/Viewers/commit/70f2c797f42af603d7ea0eb8d23b4103aba66f77))
# [3.9.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.20...v3.9.0-beta.21) (2024-05-24)
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-sr
+9 -9
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone-dicom-sr",
"version": "3.9.0-beta.21",
"version": "3.9.0-beta.26",
"description": "OHIF extension for an SR Cornerstone Viewport",
"author": "OHIF",
"license": "MIT",
@@ -34,21 +34,21 @@
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
},
"peerDependencies": {
"@ohif/core": "3.9.0-beta.21",
"@ohif/extension-cornerstone": "3.9.0-beta.21",
"@ohif/extension-measurement-tracking": "3.9.0-beta.21",
"@ohif/ui": "3.9.0-beta.21",
"@ohif/core": "3.9.0-beta.26",
"@ohif/extension-cornerstone": "3.9.0-beta.26",
"@ohif/extension-measurement-tracking": "3.9.0-beta.26",
"@ohif/ui": "3.9.0-beta.26",
"dcmjs": "^0.29.12",
"dicom-parser": "^1.8.9",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
"react": "^17.0.2"
"react": "^18.3.1"
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^1.74.7",
"@cornerstonejs/core": "^1.74.7",
"@cornerstonejs/tools": "^1.74.7",
"@cornerstonejs/adapters": "^1.77.0",
"@cornerstonejs/core": "^1.77.0",
"@cornerstonejs/tools": "^1.77.0",
"classnames": "^2.3.2"
}
}
@@ -367,16 +367,11 @@ OHIFCornerstoneSRViewport.propTypes = {
dataSource: PropTypes.object,
children: PropTypes.node,
viewportLabel: PropTypes.string,
customProps: PropTypes.object,
viewportOptions: PropTypes.object,
servicesManager: PropTypes.object.isRequired,
extensionManager: PropTypes.instanceOf(ExtensionManager).isRequired,
};
OHIFCornerstoneSRViewport.defaultProps = {
customProps: {},
};
async function _getViewportReferencedDisplaySetData(
displaySet,
measurementSelected,
@@ -3,6 +3,55 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.9.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.25...v3.9.0-beta.26) (2024-05-29)
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
# [3.9.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.24...v3.9.0-beta.25) (2024-05-29)
### Bug Fixes
* **ultrasound:** Upgrade cornerstone3D version to resolve coloring issues ([#4181](https://github.com/OHIF/Viewers/issues/4181)) ([75a71db](https://github.com/OHIF/Viewers/commit/75a71db7f89840250ad1c2b35df5a35aceb8be7d))
# [3.9.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.23...v3.9.0-beta.24) (2024-05-29)
### Features
* **measurements:** show untracked measurements in measurement panel under additional findings ([#4160](https://github.com/OHIF/Viewers/issues/4160)) ([18686c2](https://github.com/OHIF/Viewers/commit/18686c2caf13ede3e881303100bd4cc34b8b135f))
# [3.9.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.22...v3.9.0-beta.23) (2024-05-28)
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
# [3.9.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.21...v3.9.0-beta.22) (2024-05-27)
### Features
* **ui:** move to React 18 and base for using shadcn/ui ([#4174](https://github.com/OHIF/Viewers/issues/4174)) ([70f2c79](https://github.com/OHIF/Viewers/commit/70f2c797f42af603d7ea0eb8d23b4103aba66f77))
# [3.9.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.20...v3.9.0-beta.21) (2024-05-24)
**Note:** Version bump only for package @ohif/extension-cornerstone-dynamic-volume
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone-dynamic-volume",
"version": "3.9.0-beta.21",
"version": "3.9.0-beta.26",
"description": "OHIF extension for 4D volumes data",
"author": "OHIF",
"license": "MIT",
@@ -29,22 +29,22 @@
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
},
"peerDependencies": {
"@ohif/core": "3.9.0-beta.21",
"@ohif/extension-cornerstone": "3.9.0-beta.21",
"@ohif/extension-default": "3.9.0-beta.21",
"@ohif/i18n": "3.9.0-beta.21",
"@ohif/ui": "3.9.0-beta.21",
"@ohif/core": "3.9.0-beta.26",
"@ohif/extension-cornerstone": "3.9.0-beta.26",
"@ohif/extension-default": "3.9.0-beta.26",
"@ohif/i18n": "3.9.0-beta.26",
"@ohif/ui": "3.9.0-beta.26",
"dcmjs": "^0.29.5",
"dicom-parser": "^1.8.21",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
"react": "^17.0.2"
"react": "^18.3.1"
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/core": "^1.74.7",
"@cornerstonejs/streaming-image-volume-loader": "^1.74.7",
"@cornerstonejs/tools": "^1.74.7",
"@cornerstonejs/core": "^1.77.0",
"@cornerstonejs/streaming-image-volume-loader": "^1.77.0",
"@cornerstonejs/tools": "^1.77.0",
"classnames": "^2.3.2"
}
}
+55
View File
@@ -3,6 +3,61 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.9.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.25...v3.9.0-beta.26) (2024-05-29)
### Features
* **hp:** Add displayArea option for Hanging protocols and example with Mamo([#3808](https://github.com/OHIF/Viewers/issues/3808)) ([18ac08e](https://github.com/OHIF/Viewers/commit/18ac08ed860d119721c52e4ffc270332259100b6))
# [3.9.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.24...v3.9.0-beta.25) (2024-05-29)
### Bug Fixes
* **ultrasound:** Upgrade cornerstone3D version to resolve coloring issues ([#4181](https://github.com/OHIF/Viewers/issues/4181)) ([75a71db](https://github.com/OHIF/Viewers/commit/75a71db7f89840250ad1c2b35df5a35aceb8be7d))
# [3.9.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.23...v3.9.0-beta.24) (2024-05-29)
### Features
* **measurements:** show untracked measurements in measurement panel under additional findings ([#4160](https://github.com/OHIF/Viewers/issues/4160)) ([18686c2](https://github.com/OHIF/Viewers/commit/18686c2caf13ede3e881303100bd4cc34b8b135f))
# [3.9.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.22...v3.9.0-beta.23) (2024-05-28)
### Bug Fixes
* **rt:** dont convert to volume for RTSTRUCT ([#4157](https://github.com/OHIF/Viewers/issues/4157)) ([7745c09](https://github.com/OHIF/Viewers/commit/7745c092bb3edf0090f32fbbbae2f0776128d5a2))
# [3.9.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.21...v3.9.0-beta.22) (2024-05-27)
### Features
* **ui:** move to React 18 and base for using shadcn/ui ([#4174](https://github.com/OHIF/Viewers/issues/4174)) ([70f2c79](https://github.com/OHIF/Viewers/commit/70f2c797f42af603d7ea0eb8d23b4103aba66f77))
# [3.9.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.20...v3.9.0-beta.21) (2024-05-24)
**Note:** Version bump only for package @ohif/extension-cornerstone
+11 -11
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone",
"version": "3.9.0-beta.21",
"version": "3.9.0-beta.26",
"description": "OHIF extension for Cornerstone",
"author": "OHIF",
"license": "MIT",
@@ -38,27 +38,27 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.2",
"@cornerstonejs/codec-openjph": "^2.4.2",
"@cornerstonejs/dicom-image-loader": "^1.74.7",
"@cornerstonejs/dicom-image-loader": "^1.77.0",
"@icr/polyseg-wasm": "^0.4.0",
"@ohif/core": "3.9.0-beta.21",
"@ohif/ui": "3.9.0-beta.21",
"@ohif/core": "3.9.0-beta.26",
"@ohif/ui": "3.9.0-beta.26",
"dcmjs": "^0.29.12",
"dicom-parser": "^1.8.21",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
"react": "^17.0.2",
"react-dom": "^17.0.2",
"react-resize-detector": "^6.7.6"
"react": "^18.3.1",
"react-dom": "^18.3.1",
"react-resize-detector": "^10.0.1"
},
"devDependencies": {
"lodash": "^4.17.21"
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^1.74.7",
"@cornerstonejs/core": "^1.74.7",
"@cornerstonejs/streaming-image-volume-loader": "^1.74.7",
"@cornerstonejs/tools": "^1.74.7",
"@cornerstonejs/adapters": "^1.77.0",
"@cornerstonejs/core": "^1.77.0",
"@cornerstonejs/streaming-image-volume-loader": "^1.77.0",
"@cornerstonejs/tools": "^1.77.0",
"@icr/polyseg-wasm": "^0.4.0",
"@kitware/vtk.js": "30.4.1",
"html2canvas": "^1.4.1",
@@ -1,5 +1,5 @@
import React, { useEffect, useRef, useCallback, useState } from 'react';
import ReactResizeDetector from 'react-resize-detector';
import { useResizeDetector } from 'react-resize-detector';
import PropTypes from 'prop-types';
import * as cs3DTools from '@cornerstonejs/tools';
import {
@@ -109,7 +109,7 @@ const OHIFCornerstoneViewport = React.memo((props: withAppTypes) => {
onElementEnabled,
// eslint-disable-next-line react/prop-types
onElementDisabled,
isJumpToMeasurementDisabled,
isJumpToMeasurementDisabled = false,
// Note: you SHOULD NOT use the initialImageIdOrIndex for manipulation
// of the imageData in the OHIFCornerstoneViewport. This prop is used
// to set the initial state of the viewport's first image to render
@@ -140,7 +140,7 @@ const OHIFCornerstoneViewport = React.memo((props: withAppTypes) => {
const [scrollbarHeight, setScrollbarHeight] = useState('100px');
const [enabledVPElement, setEnabledVPElement] = useState(null);
const elementRef = useRef();
const elementRef = useRef() as React.MutableRefObject<HTMLDivElement>;
const [appConfig] = useAppConfig();
const {
@@ -417,19 +417,21 @@ const OHIFCornerstoneViewport = React.memo((props: withAppTypes) => {
});
}, [displaySets, viewportId, viewportActionCornersService, servicesManager, commandsManager]);
const { ref: resizeRef } = useResizeDetector({
onResize,
});
return (
<React.Fragment>
<div className="viewport-wrapper">
<ReactResizeDetector
onResize={onResize}
targetRef={elementRef.current}
/>
<div
className="cornerstone-viewport-element"
style={{ height: '100%', width: '100%' }}
onContextMenu={e => e.preventDefault()}
onMouseDown={e => e.preventDefault()}
ref={elementRef}
ref={el => {
resizeRef.current = el;
elementRef.current = el;
}}
></div>
<CornerstoneOverlays
viewportId={viewportId}
@@ -683,10 +685,6 @@ function _rehydrateSynchronizers(
// Component displayName
OHIFCornerstoneViewport.displayName = 'OHIFCornerstoneViewport';
OHIFCornerstoneViewport.defaultProps = {
isJumpToMeasurementDisabled: false,
};
OHIFCornerstoneViewport.propTypes = {
displaySets: PropTypes.array.isRequired,
dataSource: PropTypes.object.isRequired,
@@ -305,7 +305,7 @@ function CustomizableViewportOverlay({
function _getViewportInstances(viewportData) {
const imageIds = [];
if (viewportData.viewportType === Enums.ViewportType.STACK) {
imageIds.push(viewportData.data.imageIds[0]);
imageIds.push(viewportData.data[0].imageIds[0]);
} else if (viewportData.viewportType === Enums.ViewportType.ORTHOGRAPHIC) {
const volumes = viewportData.data;
volumes.forEach(volume => {
@@ -345,7 +345,7 @@ const getInstanceNumber = (viewportData, viewportId, imageIndex, cornerstoneView
};
function _getInstanceNumberFromStack(viewportData, imageIndex) {
const imageIds = viewportData.data.imageIds;
const imageIds = viewportData.data[0].imageIds;
const imageId = imageIds[imageIndex];
if (!imageId) {
@@ -48,7 +48,7 @@ function CornerstoneImageScrollbar({
setImageSliceData({
imageIndex: imageIndex,
numberOfSlices: viewportData.data.imageIds.length,
numberOfSlices: viewportData.data[0].imageIds.length,
});
return;
@@ -78,7 +78,7 @@ function CornerstoneImageScrollbar({
// find the index of imageId in the imageIds
setImageSliceData({
imageIndex: newImageIdIndex,
numberOfSlices: viewportData.data.imageIds.length,
numberOfSlices: viewportData.data[0].imageIds.length,
});
};
@@ -78,14 +78,8 @@ function ViewportImageSliceLoadingIndicator({ viewportData, element }) {
}
ViewportImageSliceLoadingIndicator.propTypes = {
percentComplete: PropTypes.number,
error: PropTypes.object,
element: PropTypes.object,
};
ViewportImageSliceLoadingIndicator.defaultProps = {
percentComplete: 0,
error: null,
};
export default ViewportImageSliceLoadingIndicator;
@@ -67,7 +67,7 @@ function ViewportOrientationMarkers({
let rowCosines, columnCosines;
if (viewportData.viewportType === 'stack') {
const imageIndex = imageSliceData.imageIndex;
const imageId = viewportData.data.imageIds?.[imageIndex];
const imageId = viewportData.data[0].imageIds?.[imageIndex];
// Workaround for below TODO stub
if (!imageId) {
@@ -136,16 +136,6 @@ function ViewportOrientationMarkers({
return <div className="ViewportOrientationMarkers select-none">{markers}</div>;
}
ViewportOrientationMarkers.propTypes = {
percentComplete: PropTypes.number,
error: PropTypes.object,
};
ViewportOrientationMarkers.defaultProps = {
percentComplete: 0,
error: null,
};
/**
*
* Computes the orientation labels on a Cornerstone-enabled Viewport element
@@ -6,7 +6,7 @@ function _getVolumesFromViewport(viewport) {
}
function _getVolumeFromViewport(viewport) {
const volumes = _getVolumesFromViewport(viewport);
const volumes = _getVolumesFromViewport(viewport).filter(volume => volume);
const dynamicVolume = volumes.find(volume => volume.isDynamicVolume());
return dynamicVolume ?? volumes[0];
@@ -143,14 +143,25 @@ class CornerstoneCacheService {
return newViewportData;
}
private _getStackViewportData(
private async _getStackViewportData(
dataSource,
displaySets,
initialImageIndex,
viewportType: Enums.ViewportType
): StackViewportData {
// For Stack Viewport we don't have fusion currently
const displaySet = displaySets[0];
): Promise<StackViewportData> {
const overlayDisplaySets = displaySets.filter(ds => ds.isOverlayDisplaySet);
const nonOverlayDisplaySets = displaySets.filter(ds => !ds.isOverlayDisplaySet);
// load overlays if they are not loaded
for (const overlayDisplaySet of overlayDisplaySets) {
if (overlayDisplaySet.load && overlayDisplaySet.load instanceof Function) {
const { userAuthenticationService } = this.servicesManager.services;
const headers = userAuthenticationService.getAuthorizationHeader();
await overlayDisplaySet.load({ headers });
}
}
const displaySet = nonOverlayDisplaySets[0];
let stackImageIds = this.stackImageIds.get(displaySet.displaySetInstanceUID);
@@ -159,23 +170,23 @@ class CornerstoneCacheService {
this.stackImageIds.set(displaySet.displaySetInstanceUID, stackImageIds);
}
const { displaySetInstanceUID, StudyInstanceUID, isCompositeStack } = displaySet;
// Ensuring the first non-overlay `displaySet` is always the primary one
const StackViewportData = [displaySet, ...overlayDisplaySets].map(ds => {
const { displaySetInstanceUID, StudyInstanceUID, isCompositeStack } = ds;
const StackViewportData: StackViewportData = {
viewportType,
data: {
return {
StudyInstanceUID,
displaySetInstanceUID,
isCompositeStack,
imageIds: stackImageIds,
},
initialImageIndex,
};
});
return {
viewportType,
data: StackViewportData,
};
if (typeof initialImageIndex === 'number') {
StackViewportData.data.initialImageIndex = initialImageIndex;
}
return StackViewportData;
}
private async _getVolumeViewportData(
@@ -557,9 +557,14 @@ class CornerstoneViewportService extends PubSubService implements IViewportServi
): Promise<void> {
const displaySetOptions = viewportInfo.getDisplaySetOptions();
const { imageIds, initialImageIndex, displaySetInstanceUID } = viewportData.data;
const displaySetInstanceUIDs = viewportData.data.map(data => data.displaySetInstanceUID);
this.viewportsDisplaySets.set(viewport.id, [displaySetInstanceUID]);
// based on the cache service construct always the first one is the non-overlay
// and the rest are overlays
this.viewportsDisplaySets.set(viewport.id, [...displaySetInstanceUIDs]);
const { initialImageIndex, imageIds } = viewportData.data[0];
let initialImageIndexToUse =
presentations?.positionPresentation?.initialImageIndex ?? initialImageIndex;
@@ -568,6 +573,8 @@ class CornerstoneViewportService extends PubSubService implements IViewportServi
initialImageIndexToUse = this._getInitialImageIndexForViewport(viewportInfo, imageIds) || 0;
}
const { rotation, flipHorizontal, displayArea } = viewportInfo.getViewportOptions();
const properties = { ...presentations.lutPresentation?.properties };
if (!presentations.lutPresentation?.properties) {
const { voi, voiInverted, colormap } = displaySetOptions[0];
@@ -588,9 +595,20 @@ class CornerstoneViewportService extends PubSubService implements IViewportServi
}
}
this._handleOverlays(viewport);
return viewport.setStack(imageIds, initialImageIndexToUse).then(() => {
viewport.setProperties({ ...properties });
this.setPresentations(viewport.id, presentations);
if (displayArea) {
viewport.setDisplayArea(displayArea);
}
if (rotation) {
viewport.setProperties({ rotation });
}
if (flipHorizontal) {
viewport.setCamera({ flipHorizontal: true });
}
});
}
@@ -772,24 +790,7 @@ class CornerstoneViewportService extends PubSubService implements IViewportServi
this.setPresentations(viewport.id, presentations);
// load any secondary displaySets
const displaySetInstanceUIDs = this.viewportsDisplaySets.get(viewport.id);
// can be SEG or RTSTRUCT for now
const overlayDisplaySet = displaySetInstanceUIDs
.map(displaySetService.getDisplaySetByUID)
.find(displaySet => displaySet?.isOverlayDisplaySet);
if (overlayDisplaySet) {
this.addOverlayRepresentationForDisplaySet(overlayDisplaySet, viewport);
} else {
// If the displaySet is not a SEG displaySet we assume it is a primary displaySet
// and we can look into hydrated segmentations to check if any of them are
// associated with the primary displaySet
// get segmentations only returns the hydrated segmentations
this._addSegmentationRepresentationToToolGroupIfNecessary(displaySetInstanceUIDs, viewport);
}
this._handleOverlays(viewport);
const toolGroup = toolGroupService.getToolGroupForViewport(viewport.id);
csToolsUtils.segmentation.triggerSegmentationRender(toolGroup.id);
@@ -809,6 +810,28 @@ class CornerstoneViewportService extends PubSubService implements IViewportServi
});
}
private _handleOverlays(viewport: Types.IStackViewport | Types.IVolumeViewport) {
const { displaySetService } = this.servicesManager.services;
// load any secondary displaySets
const displaySetInstanceUIDs = this.viewportsDisplaySets.get(viewport.id);
// can be SEG or RTSTRUCT for now
const overlayDisplaySet = displaySetInstanceUIDs
.map(displaySetService.getDisplaySetByUID)
.find(displaySet => displaySet?.isOverlayDisplaySet);
if (overlayDisplaySet) {
this.addOverlayRepresentationForDisplaySet(overlayDisplaySet, viewport);
} else {
// If the displaySet is not a SEG displaySet we assume it is a primary displaySet
// and we can look into hydrated segmentations to check if any of them are
// associated with the primary displaySet
// get segmentations only returns the hydrated segmentations
this._addSegmentationRepresentationToToolGroupIfNecessary(displaySetInstanceUIDs, viewport);
}
}
private _addSegmentationRepresentationToToolGroupIfNecessary(
displaySetInstanceUIDs: string[],
viewport: any
@@ -22,7 +22,7 @@ type VolumeData = {
type StackViewportData = {
viewportType: Enums.ViewportType;
data: StackData;
data: StackData[];
};
type VolumeViewportData = {
@@ -36,8 +36,8 @@ const Angle = {
const { SOPInstanceUID, SeriesInstanceUID, StudyInstanceUID } = getSOPInstanceAttributes(
referencedImageId,
CornerstoneViewportService,
viewportId
displaySetService,
annotation
);
let displaySet;
@@ -48,7 +48,7 @@ const Angle = {
SeriesInstanceUID
);
} else {
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID);
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
}
const { points, textBox } = data.handles;
@@ -76,11 +76,12 @@ const Angle = {
data: data.cachedStats,
type: getValueTypeFromToolType(toolName),
getReport,
referencedImageId,
};
},
};
function getMappedAnnotations(annotation, DisplaySetService) {
function getMappedAnnotations(annotation, displaySetService) {
const { metadata, data } = annotation;
const { cachedStats } = data;
const { referencedImageId } = metadata;
@@ -94,19 +95,14 @@ function getMappedAnnotations(annotation, DisplaySetService) {
Object.keys(cachedStats).forEach(targetId => {
const targetStats = cachedStats[targetId];
if (!referencedImageId) {
throw new Error('Non-acquisition plane measurement mapping not supported');
}
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } =
getSOPInstanceAttributes(referencedImageId);
const displaySet = DisplaySetService.getDisplaySetForSOPInstanceUID(
SOPInstanceUID,
SeriesInstanceUID,
frameNumber
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } = getSOPInstanceAttributes(
referencedImageId,
displaySetService,
annotation
);
const displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
const { SeriesNumber } = displaySet;
const { angle } = targetStats;
const unit = '\u00B0';
@@ -34,8 +34,8 @@ const Length = {
const { SOPInstanceUID, SeriesInstanceUID, StudyInstanceUID } = getSOPInstanceAttributes(
referencedImageId,
cornerstoneViewportService,
viewportId
displaySetService,
annotation
);
let displaySet;
@@ -46,7 +46,7 @@ const Length = {
SeriesInstanceUID
);
} else {
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID);
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
}
const { points, textBox } = data.handles;
@@ -64,6 +64,7 @@ const Length = {
metadata,
referenceSeriesUID: SeriesInstanceUID,
referenceStudyUID: StudyInstanceUID,
referencedImageId,
frameNumber: mappedAnnotations[0]?.frameNumber || 1,
toolName: metadata.toolName,
displaySetInstanceUID: displaySet.displaySetInstanceUID,
@@ -85,15 +86,14 @@ function getMappedAnnotations(annotation, displaySetService) {
const annotations = [];
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } =
getSOPInstanceAttributes(referencedImageId);
const displaySet = displaySetService.getDisplaySetForSOPInstanceUID(
SOPInstanceUID,
SeriesInstanceUID,
frameNumber
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } = getSOPInstanceAttributes(
referencedImageId,
displaySetService,
annotation
);
const displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
const { SeriesNumber } = displaySet;
annotations.push({
@@ -31,8 +31,8 @@ const Bidirectional = {
const { SOPInstanceUID, SeriesInstanceUID, StudyInstanceUID } = getSOPInstanceAttributes(
referencedImageId,
cornerstoneViewportService,
viewportId
displaySetService,
annotation
);
let displaySet;
@@ -43,7 +43,7 @@ const Bidirectional = {
SeriesInstanceUID
);
} else {
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID);
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
}
const { points, textBox } = data.handles;
@@ -63,6 +63,7 @@ const Bidirectional = {
metadata,
referenceSeriesUID: SeriesInstanceUID,
referenceStudyUID: StudyInstanceUID,
referencedImageId,
frameNumber: mappedAnnotations[0]?.frameNumber || 1,
toolName: metadata.toolName,
displaySetInstanceUID: displaySet.displaySetInstanceUID,
@@ -89,19 +90,14 @@ function getMappedAnnotations(annotation, displaySetService) {
Object.keys(cachedStats).forEach(targetId => {
const targetStats = cachedStats[targetId];
if (!referencedImageId) {
throw new Error('Non-acquisition plane measurement mapping not supported');
}
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } =
getSOPInstanceAttributes(referencedImageId);
const displaySet = displaySetService.getDisplaySetForSOPInstanceUID(
SOPInstanceUID,
SeriesInstanceUID,
frameNumber
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } = getSOPInstanceAttributes(
referencedImageId,
displaySetService,
annotation
);
const displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
const { SeriesNumber } = displaySet;
const { length, width, unit } = targetStats;
@@ -8,7 +8,7 @@ const CircleROI = {
toAnnotation: measurement => {},
toMeasurement: (
csToolsEventDetail,
DisplaySetService,
displaySetService,
CornerstoneViewportService,
getValueTypeFromToolType,
customizationService
@@ -30,24 +30,24 @@ const CircleROI = {
const { SOPInstanceUID, SeriesInstanceUID, StudyInstanceUID } = getSOPInstanceAttributes(
referencedImageId,
CornerstoneViewportService,
viewportId
displaySetService,
annotation
);
let displaySet;
if (SOPInstanceUID) {
displaySet = DisplaySetService.getDisplaySetForSOPInstanceUID(
displaySet = displaySetService.getDisplaySetForSOPInstanceUID(
SOPInstanceUID,
SeriesInstanceUID
);
} else {
displaySet = DisplaySetService.getDisplaySetsForSeries(SeriesInstanceUID);
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
}
const { points, textBox } = data.handles;
const mappedAnnotations = getMappedAnnotations(annotation, DisplaySetService);
const mappedAnnotations = getMappedAnnotations(annotation, displaySetService);
const displayText = getDisplayText(mappedAnnotations, displaySet, customizationService);
const getReport = () =>
@@ -62,6 +62,7 @@ const CircleROI = {
metadata,
referenceSeriesUID: SeriesInstanceUID,
referenceStudyUID: StudyInstanceUID,
referencedImageId,
frameNumber: mappedAnnotations[0]?.frameNumber || 1,
toolName: metadata.toolName,
displaySetInstanceUID: displaySet.displaySetInstanceUID,
@@ -74,7 +75,7 @@ const CircleROI = {
},
};
function getMappedAnnotations(annotation, DisplaySetService) {
function getMappedAnnotations(annotation, displaySetService) {
const { metadata, data } = annotation;
const { cachedStats } = data;
const { referencedImageId } = metadata;
@@ -88,20 +89,14 @@ function getMappedAnnotations(annotation, DisplaySetService) {
Object.keys(cachedStats).forEach(targetId => {
const targetStats = cachedStats[targetId];
if (!referencedImageId) {
// Todo: Non-acquisition plane measurement mapping not supported yet
throw new Error('Non-acquisition plane measurement mapping not supported');
}
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } =
getSOPInstanceAttributes(referencedImageId);
const displaySet = DisplaySetService.getDisplaySetForSOPInstanceUID(
SOPInstanceUID,
SeriesInstanceUID,
frameNumber
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } = getSOPInstanceAttributes(
referencedImageId,
displaySetService,
annotation
);
const displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
const { SeriesNumber } = displaySet;
const { mean, stdDev, max, area, Modality, areaUnit, modalityUnit } = targetStats;
@@ -36,8 +36,8 @@ const CobbAngle = {
const { SOPInstanceUID, SeriesInstanceUID, StudyInstanceUID } = getSOPInstanceAttributes(
referencedImageId,
CornerstoneViewportService,
viewportId
displaySetService,
annotation
);
let displaySet;
@@ -48,7 +48,7 @@ const CobbAngle = {
SeriesInstanceUID
);
} else {
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID);
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
}
const { points, textBox } = data.handles;
@@ -68,6 +68,7 @@ const CobbAngle = {
metadata,
referenceSeriesUID: SeriesInstanceUID,
referenceStudyUID: StudyInstanceUID,
referencedImageId,
frameNumber: mappedAnnotations?.[0]?.frameNumber || 1,
toolName: metadata.toolName,
displaySetInstanceUID: displaySet.displaySetInstanceUID,
@@ -80,7 +81,7 @@ const CobbAngle = {
},
};
function getMappedAnnotations(annotation, DisplaySetService) {
function getMappedAnnotations(annotation, displaySetService) {
const { metadata, data } = annotation;
const { cachedStats } = data;
const { referencedImageId } = metadata;
@@ -94,19 +95,14 @@ function getMappedAnnotations(annotation, DisplaySetService) {
Object.keys(cachedStats).forEach(targetId => {
const targetStats = cachedStats[targetId];
if (!referencedImageId) {
throw new Error('Non-acquisition plane measurement mapping not supported');
}
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } =
getSOPInstanceAttributes(referencedImageId);
const displaySet = DisplaySetService.getDisplaySetForSOPInstanceUID(
SOPInstanceUID,
SeriesInstanceUID,
frameNumber
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } = getSOPInstanceAttributes(
referencedImageId,
displaySetService,
annotation
);
const displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
const { SeriesNumber } = displaySet;
const { angle } = targetStats;
const unit = '\u00B0';
@@ -30,8 +30,8 @@ const EllipticalROI = {
const { SOPInstanceUID, SeriesInstanceUID, StudyInstanceUID } = getSOPInstanceAttributes(
referencedImageId,
cornerstoneViewportService,
viewportId
displaySetService,
annotation
);
let displaySet;
@@ -42,7 +42,7 @@ const EllipticalROI = {
SeriesInstanceUID
);
} else {
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID);
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
}
const { points, textBox } = data.handles;
@@ -62,6 +62,7 @@ const EllipticalROI = {
metadata,
referenceSeriesUID: SeriesInstanceUID,
referenceStudyUID: StudyInstanceUID,
referencedImageId,
frameNumber: mappedAnnotations[0]?.frameNumber || 1,
toolName: metadata.toolName,
displaySetInstanceUID: displaySet.displaySetInstanceUID,
@@ -88,20 +89,14 @@ function getMappedAnnotations(annotation, displaySetService) {
Object.keys(cachedStats).forEach(targetId => {
const targetStats = cachedStats[targetId];
if (!referencedImageId) {
// Todo: Non-acquisition plane measurement mapping not supported yet
throw new Error('Non-acquisition plane measurement mapping not supported');
}
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } =
getSOPInstanceAttributes(referencedImageId);
const displaySet = displaySetService.getDisplaySetForSOPInstanceUID(
SOPInstanceUID,
SeriesInstanceUID,
frameNumber
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } = getSOPInstanceAttributes(
referencedImageId,
displaySetService,
annotation
);
const displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
const { SeriesNumber } = displaySet;
const { mean, stdDev, max, area, Modality, areaUnit, modalityUnit } = targetStats;
@@ -35,8 +35,8 @@ const Length = {
const { SOPInstanceUID, SeriesInstanceUID, StudyInstanceUID } = getSOPInstanceAttributes(
referencedImageId,
cornerstoneViewportService,
viewportId
displaySetService,
annotation
);
let displaySet;
@@ -47,7 +47,7 @@ const Length = {
SeriesInstanceUID
);
} else {
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID);
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
}
const { points, textBox } = data.handles;
@@ -67,6 +67,7 @@ const Length = {
metadata,
referenceSeriesUID: SeriesInstanceUID,
referenceStudyUID: StudyInstanceUID,
referencedImageId,
frameNumber: mappedAnnotations[0]?.frameNumber || 1,
toolName: metadata.toolName,
displaySetInstanceUID: displaySet.displaySetInstanceUID,
@@ -93,19 +94,14 @@ function getMappedAnnotations(annotation, displaySetService) {
Object.keys(cachedStats).forEach(targetId => {
const targetStats = cachedStats[targetId];
if (!referencedImageId) {
throw new Error('Non-acquisition plane measurement mapping not supported');
}
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } =
getSOPInstanceAttributes(referencedImageId);
const displaySet = displaySetService.getDisplaySetForSOPInstanceUID(
SOPInstanceUID,
SeriesInstanceUID,
frameNumber
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } = getSOPInstanceAttributes(
referencedImageId,
displaySetService,
annotation
);
const displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
const { SeriesNumber } = displaySet;
const { length, unit = 'mm' } = targetStats;
@@ -20,7 +20,7 @@ const PlanarFreehandROI = {
*/
toMeasurement: (
csToolsEventDetail,
DisplaySetService,
displaySetService,
CornerstoneViewportService,
getValueTypeFromToolType,
customizationService
@@ -40,16 +40,16 @@ const PlanarFreehandROI = {
}
const { SOPInstanceUID, SeriesInstanceUID, frameNumber, StudyInstanceUID } =
getSOPInstanceAttributes(referencedImageId);
getSOPInstanceAttributes(referencedImageId, displaySetService, annotation);
let displaySet;
if (SOPInstanceUID) {
displaySet = DisplaySetService.getDisplaySetForSOPInstanceUID(
displaySet = displaySetService.getDisplaySetForSOPInstanceUID(
SOPInstanceUID,
SeriesInstanceUID
);
} else {
displaySet = DisplaySetService.getDisplaySetsForSeries(SeriesInstanceUID);
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
}
return {
@@ -62,10 +62,11 @@ const PlanarFreehandROI = {
frameNumber,
referenceSeriesUID: SeriesInstanceUID,
referenceStudyUID: StudyInstanceUID,
referencedImageId,
toolName: metadata.toolName,
displaySetInstanceUID: displaySet.displaySetInstanceUID,
label: data.label,
displayText: getDisplayText(annotation, displaySet, customizationService),
displayText: getDisplayText(annotation, displaySet, customizationService, displaySetService),
data: data.cachedStats,
type: getValueTypeFromToolType(toolName),
getReport: () => getColumnValueReport(annotation, customizationService),
@@ -122,17 +123,17 @@ function getColumnValueReport(annotation, customizationService) {
* @param {Object} displaySet - The display set object.
* @returns {string[]} - An array of display text.
*/
function getDisplayText(annotation, displaySet, customizationService) {
function getDisplayText(annotation, displaySet, customizationService, displaySetService) {
const { PlanarFreehandROI } = customizationService.get('cornerstone.measurements');
const { displayText } = PlanarFreehandROI;
const { metadata, data } = annotation;
if (!data.cachedStats || !data.cachedStats[`imageId:${metadata.referencedImageId}`]) {
return [];
}
const { SOPInstanceUID, frameNumber } = getSOPInstanceAttributes(metadata.referencedImageId);
const { SOPInstanceUID, frameNumber } = getSOPInstanceAttributes(
metadata.referencedImageId,
displaySetService,
annotation
);
const displayTextArray = [];
@@ -150,7 +151,13 @@ function getDisplayText(annotation, displaySet, customizationService) {
displayTextArray.push(`S: ${SeriesNumber}${instanceText}${frameText}`);
}
const stats = data.cachedStats[`imageId:${metadata.referencedImageId}`];
const stats =
data.cachedStats[`imageId:${metadata.referencedImageId}`] ||
Array.from(Object.values(data.cachedStats))[0];
if (!stats) {
return displayTextArray;
}
const roundValues = values => {
if (Array.isArray(values)) {
@@ -158,10 +165,10 @@ function getDisplayText(annotation, displaySet, customizationService) {
if (isNaN(value)) {
return value;
}
return utils.roundNumber(value);
return utils.roundNumber(value, 2);
});
}
return isNaN(values) ? values : utils.roundNumber(values);
return isNaN(values) ? values : utils.roundNumber(values, 2);
};
const findUnitForValue = (displayTextItems, value) =>
@@ -34,8 +34,11 @@ const Probe = {
throw new Error('Tool not supported');
}
const { SOPInstanceUID, SeriesInstanceUID, StudyInstanceUID } =
getSOPInstanceAttributes(referencedImageId);
const { SOPInstanceUID, SeriesInstanceUID, StudyInstanceUID } = getSOPInstanceAttributes(
referencedImageId,
displaySetService,
annotation
);
let displaySet;
@@ -45,7 +48,7 @@ const Probe = {
SeriesInstanceUID
);
} else {
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID);
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
}
const { points } = data.handles;
@@ -64,6 +67,7 @@ const Probe = {
metadata,
referenceSeriesUID: SeriesInstanceUID,
referenceStudyUID: StudyInstanceUID,
referencedImageId,
frameNumber: mappedAnnotations?.[0]?.frameNumber || 1,
toolName: metadata.toolName,
displaySetInstanceUID: displaySet.displaySetInstanceUID,
@@ -76,7 +80,7 @@ const Probe = {
},
};
function getMappedAnnotations(annotation, DisplaySetService) {
function getMappedAnnotations(annotation, displaySetService) {
const { metadata, data } = annotation;
const { cachedStats } = data;
const { referencedImageId } = metadata;
@@ -90,19 +94,14 @@ function getMappedAnnotations(annotation, DisplaySetService) {
Object.keys(cachedStats).forEach(targetId => {
const targetStats = cachedStats[targetId];
if (!referencedImageId) {
throw new Error('Non-acquisition plane measurement mapping not supported');
}
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } =
getSOPInstanceAttributes(referencedImageId);
const displaySet = DisplaySetService.getDisplaySetForSOPInstanceUID(
SOPInstanceUID,
SeriesInstanceUID,
frameNumber
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } = getSOPInstanceAttributes(
referencedImageId,
displaySetService,
annotation
);
const displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
const { SeriesNumber } = displaySet;
const { value } = targetStats;
const unit = 'HU';
@@ -8,7 +8,7 @@ const RectangleROI = {
toAnnotation: measurement => {},
toMeasurement: (
csToolsEventDetail,
DisplaySetService,
displaySetService,
CornerstoneViewportService,
getValueTypeFromToolType,
customizationService
@@ -30,24 +30,24 @@ const RectangleROI = {
const { SOPInstanceUID, SeriesInstanceUID, StudyInstanceUID } = getSOPInstanceAttributes(
referencedImageId,
CornerstoneViewportService,
viewportId
displaySetService,
annotation
);
let displaySet;
if (SOPInstanceUID) {
displaySet = DisplaySetService.getDisplaySetForSOPInstanceUID(
displaySet = displaySetService.getDisplaySetForSOPInstanceUID(
SOPInstanceUID,
SeriesInstanceUID
);
} else {
displaySet = DisplaySetService.getDisplaySetsForSeries(SeriesInstanceUID);
displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
}
const { points, textBox } = data.handles;
const mappedAnnotations = getMappedAnnotations(annotation, DisplaySetService);
const mappedAnnotations = getMappedAnnotations(annotation, displaySetService);
const displayText = getDisplayText(mappedAnnotations, displaySet, customizationService);
const getReport = () =>
@@ -62,6 +62,7 @@ const RectangleROI = {
metadata,
referenceSeriesUID: SeriesInstanceUID,
referenceStudyUID: StudyInstanceUID,
referencedImageId,
frameNumber: mappedAnnotations[0]?.frameNumber || 1,
toolName: metadata.toolName,
displaySetInstanceUID: displaySet.displaySetInstanceUID,
@@ -74,7 +75,7 @@ const RectangleROI = {
},
};
function getMappedAnnotations(annotation, DisplaySetService) {
function getMappedAnnotations(annotation, displaySetService) {
const { metadata, data } = annotation;
const { cachedStats } = data;
const { referencedImageId } = metadata;
@@ -88,20 +89,14 @@ function getMappedAnnotations(annotation, DisplaySetService) {
Object.keys(cachedStats).forEach(targetId => {
const targetStats = cachedStats[targetId];
if (!referencedImageId) {
// Todo: Non-acquisition plane measurement mapping not supported yet
throw new Error('Non-acquisition plane measurement mapping not supported');
}
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } =
getSOPInstanceAttributes(referencedImageId);
const displaySet = DisplaySetService.getDisplaySetForSOPInstanceUID(
SOPInstanceUID,
SeriesInstanceUID,
frameNumber
const { SOPInstanceUID, SeriesInstanceUID, frameNumber } = getSOPInstanceAttributes(
referencedImageId,
displaySetService,
annotation
);
const displaySet = displaySetService.getDisplaySetsForSeries(SeriesInstanceUID)[0];
const { SeriesNumber } = displaySet;
const { mean, stdDev, max, area, Modality, modalityUnit, areaUnit } = targetStats;
@@ -7,12 +7,24 @@ import * as cornerstone from '@cornerstonejs/core';
* @param {string} imageId The image id of the referenced image
* @returns
*/
export default function getSOPInstanceAttributes(imageId) {
export default function getSOPInstanceAttributes(imageId, displaySetService, annotation) {
if (imageId) {
return _getUIDFromImageID(imageId);
}
// Todo: implement for volume viewports and use the referencedSeriesInstanceUID
const { metadata } = annotation;
const { volumeId } = metadata;
const displaySet = displaySetService.getDisplaySetsBy(displaySet =>
volumeId.includes(displaySet.uid)
)[0];
const { StudyInstanceUID, SeriesInstanceUID } = displaySet;
return {
SOPInstanceUID: undefined,
SeriesInstanceUID,
StudyInstanceUID,
};
}
function _getUIDFromImageID(imageId) {
+46
View File
@@ -3,6 +3,52 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.9.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.25...v3.9.0-beta.26) (2024-05-29)
### Features
* **hp:** Add displayArea option for Hanging protocols and example with Mamo([#3808](https://github.com/OHIF/Viewers/issues/3808)) ([18ac08e](https://github.com/OHIF/Viewers/commit/18ac08ed860d119721c52e4ffc270332259100b6))
# [3.9.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.24...v3.9.0-beta.25) (2024-05-29)
**Note:** Version bump only for package @ohif/extension-default
# [3.9.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.23...v3.9.0-beta.24) (2024-05-29)
**Note:** Version bump only for package @ohif/extension-default
# [3.9.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.22...v3.9.0-beta.23) (2024-05-28)
**Note:** Version bump only for package @ohif/extension-default
# [3.9.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.21...v3.9.0-beta.22) (2024-05-27)
### Features
* **ui:** move to React 18 and base for using shadcn/ui ([#4174](https://github.com/OHIF/Viewers/issues/4174)) ([70f2c79](https://github.com/OHIF/Viewers/commit/70f2c797f42af603d7ea0eb8d23b4103aba66f77))
# [3.9.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.20...v3.9.0-beta.21) (2024-05-24)
**Note:** Version bump only for package @ohif/extension-default
@@ -0,0 +1,14 @@
<?xml version="1.0" encoding="UTF-8"?>
<svg width="18px" height="19px" viewBox="0 0 18 19" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
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