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+239
-306
@@ -1,72 +1,52 @@
|
||||
version: 2.1
|
||||
|
||||
### ABOUT
|
||||
#
|
||||
# This configuration powers our Circleci.io integration
|
||||
#
|
||||
# Note:
|
||||
# Netlify works independently from this configuration to
|
||||
# create pull request previews and to update `https://docs.ohif.org`
|
||||
###
|
||||
|
||||
## https://github.com/cypress-io/circleci-orb
|
||||
##
|
||||
orbs:
|
||||
codecov: codecov/codecov@1.0.5
|
||||
cypress: cypress-io/cypress@3.3.1
|
||||
|
||||
executors:
|
||||
cypress-custom:
|
||||
description: |
|
||||
Single Docker container used to run Cypress Tests
|
||||
docker:
|
||||
- image: cimg/node:<< parameters.node-version >>-browsers
|
||||
parameters:
|
||||
node-version:
|
||||
default: '18.16.1'
|
||||
description: |
|
||||
The version of Node to run your tests with.
|
||||
type: string
|
||||
cypress: cypress-io/cypress@3.4.2
|
||||
|
||||
defaults: &defaults
|
||||
docker:
|
||||
- image: cimg/node:18.18
|
||||
- image: cimg/node:20.18.1
|
||||
environment:
|
||||
TERM: xterm # Enable colors in term
|
||||
TERM: xterm
|
||||
QUICK_BUILD: true
|
||||
working_directory: ~/repo
|
||||
|
||||
commands:
|
||||
install_bun:
|
||||
steps:
|
||||
- restore_cache:
|
||||
keys:
|
||||
- bun-cache-v2-{{ arch }}-latest
|
||||
- run:
|
||||
name: Install Bun
|
||||
command: |
|
||||
if [ ! -d "$HOME/.bun" ]; then
|
||||
curl -fsSL https://bun.sh/install | bash
|
||||
fi
|
||||
echo 'export BUN_INSTALL="$HOME/.bun"' >> $BASH_ENV
|
||||
echo 'export PATH="$BUN_INSTALL/bin:$PATH"' >> $BASH_ENV
|
||||
source $BASH_ENV
|
||||
- save_cache:
|
||||
key: bun-cache-v2-{{ arch }}-latest
|
||||
paths:
|
||||
- ~/.bun
|
||||
|
||||
jobs:
|
||||
###
|
||||
# Workflow: PR_CHECKS
|
||||
###
|
||||
UNIT_TESTS:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
steps:
|
||||
# Update yarn
|
||||
- run: yarn -v
|
||||
- install_bun
|
||||
- run: node --version
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache ## Cache yarn and Cypress
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
command: bun install --no-save
|
||||
# RUN TESTS
|
||||
- run:
|
||||
name: 'JavaScript Test Suite'
|
||||
command: yarn run test:unit:ci
|
||||
command: bun run test:unit:ci
|
||||
# platform/app
|
||||
- run:
|
||||
name: 'VIEWER: Combine report output'
|
||||
@@ -94,36 +74,23 @@ jobs:
|
||||
file: '/home/circleci/repo/platform/core/coverage/reports'
|
||||
flags: 'core'
|
||||
|
||||
###
|
||||
# Workflow: DEPLOY
|
||||
###
|
||||
BUILD:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
steps:
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- install_bun
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache ## Cache yarn and Cypress
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
command: bun install --no-save
|
||||
# Build & Test
|
||||
- run:
|
||||
name: 'Perform the versioning before build'
|
||||
command: node ./version.mjs
|
||||
command: bun ./version.mjs
|
||||
- run:
|
||||
name: 'Build the OHIF Viewer'
|
||||
command: yarn run build
|
||||
command: bun run build
|
||||
no_output_timeout: 45m
|
||||
- run:
|
||||
name: 'Upload SourceMaps, Send Deploy Notification'
|
||||
@@ -145,30 +112,18 @@ jobs:
|
||||
- commit.txt
|
||||
- version.json
|
||||
|
||||
# just to make sure later on we can publish them
|
||||
BUILD_PACKAGES_QUICK:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
steps:
|
||||
- run: yarn -v
|
||||
- install_bun
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
# Use increasingly general patterns to restore cache
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache/yarn
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
command: bun install --frozen-lockfile
|
||||
- run:
|
||||
name: Avoid hosts unknown for github
|
||||
command: |
|
||||
@@ -180,45 +135,27 @@ jobs:
|
||||
- run:
|
||||
name: Authenticate with NPM registry
|
||||
command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
|
||||
- run:
|
||||
name: Increase the event emitter limit
|
||||
command: |
|
||||
node ./increaseEventEmitterLimit.mjs
|
||||
- run:
|
||||
name: build half of the packages (to avoid out of memory in circleci)
|
||||
command: |
|
||||
yarn run build:package-all
|
||||
bun run build:package-all
|
||||
- run:
|
||||
name: build the other half of the packages
|
||||
command: |
|
||||
yarn run build:package-all-1
|
||||
bun run build:package-all-1
|
||||
|
||||
###
|
||||
# Workflow: RELEASE
|
||||
###
|
||||
NPM_PUBLISH:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
steps:
|
||||
- run: yarn -v
|
||||
- install_bun
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
# Use increasingly general patterns to restore cache
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache/yarn
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
command: bun install --no-save
|
||||
- run:
|
||||
name: Avoid hosts unknown for github
|
||||
command: |
|
||||
@@ -230,18 +167,14 @@ jobs:
|
||||
- run:
|
||||
name: Authenticate with NPM registry
|
||||
command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
|
||||
- run:
|
||||
name: Increase the event emitter limit
|
||||
command: |
|
||||
node ./increaseEventEmitterLimit.mjs
|
||||
- run:
|
||||
name: build half of the packages (to avoid out of memory in circleci)
|
||||
command: |
|
||||
yarn run build:package-all
|
||||
bun run build:package-all
|
||||
- run:
|
||||
name: build the other half of the packages
|
||||
command: |
|
||||
yarn run build:package-all-1
|
||||
bun run build:package-all-1
|
||||
- run:
|
||||
name: increase min time out
|
||||
command: |
|
||||
@@ -253,14 +186,14 @@ jobs:
|
||||
- run:
|
||||
name: publish package versions
|
||||
command: |
|
||||
node ./publish-version.mjs
|
||||
bun ./publish-version.mjs
|
||||
- run:
|
||||
name: Again set the NPM registry (was deleted in the version script)
|
||||
command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
|
||||
- run:
|
||||
name: publish package dist
|
||||
command: |
|
||||
node ./publish-package.mjs
|
||||
bun ./publish-package.mjs
|
||||
- persist_to_workspace:
|
||||
root: ~/repo
|
||||
paths:
|
||||
@@ -275,7 +208,7 @@ jobs:
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Build and push Docker image from the release branch
|
||||
name: Build Docker image for amd64
|
||||
command: |
|
||||
# This file will exist if a new version was published by
|
||||
# our command in the previous job.
|
||||
@@ -289,12 +222,50 @@ jobs:
|
||||
export IMAGE_VERSION_FULL=v$IMAGE_VERSION
|
||||
echo $IMAGE_VERSION
|
||||
echo $IMAGE_VERSION_FULL
|
||||
# Build our image, auth, and push
|
||||
docker build --tag ohif/app:$IMAGE_VERSION_FULL --tag ohif/app:latest .
|
||||
# Build our amd64 image, auth, and push
|
||||
docker build --platform linux/amd64 --tag ohif/app:$IMAGE_VERSION_FULL-amd64 --tag ohif/app:latest-amd64 .
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
docker push ohif/app:$IMAGE_VERSION_FULL
|
||||
docker push ohif/app:latest
|
||||
docker push ohif/app:$IMAGE_VERSION_FULL-amd64
|
||||
docker push ohif/app:latest-amd64
|
||||
fi
|
||||
- persist_to_workspace:
|
||||
root: ~/repo
|
||||
paths:
|
||||
- .
|
||||
|
||||
DOCKER_RELEASE_PUBLISH_ARM:
|
||||
<<: *defaults
|
||||
resource_class: arm.large
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Build Docker image for arm64 (Release)
|
||||
command: |
|
||||
# This file will exist if a new version was published by
|
||||
# our command in the previous job.
|
||||
if [[ ! -e version.txt ]]; then
|
||||
exit 0
|
||||
else
|
||||
# Remove npm config
|
||||
rm -f ./.npmrc
|
||||
# Set our version number using vars
|
||||
export IMAGE_VERSION=$(cat version.txt)
|
||||
export IMAGE_VERSION_FULL=v$IMAGE_VERSION
|
||||
echo $IMAGE_VERSION
|
||||
echo $IMAGE_VERSION_FULL
|
||||
# Build our arm64 image, auth, and push
|
||||
docker build --platform linux/arm64 --tag ohif/app:$IMAGE_VERSION_FULL-arm64 --tag ohif/app:latest-arm64 .
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
docker push ohif/app:$IMAGE_VERSION_FULL-arm64
|
||||
docker push ohif/app:latest-arm64
|
||||
fi
|
||||
- persist_to_workspace:
|
||||
root: ~/repo
|
||||
paths:
|
||||
- .
|
||||
|
||||
DOCKER_BETA_PUBLISH:
|
||||
<<: *defaults
|
||||
@@ -305,7 +276,7 @@ jobs:
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Build and push Docker image from the master branch (beta releases)
|
||||
name: Build Docker image for amd64 (Beta)
|
||||
command: |
|
||||
echo $(ls -l)
|
||||
|
||||
@@ -317,108 +288,155 @@ jobs:
|
||||
else
|
||||
echo "Building and pushing Docker image from the master branch (beta releases)"
|
||||
rm -f ./.npmrc
|
||||
|
||||
# Set our version number using vars
|
||||
export IMAGE_VERSION=$(cat version.txt)
|
||||
export IMAGE_VERSION_FULL=v$IMAGE_VERSION
|
||||
echo $IMAGE_VERSION
|
||||
echo $IMAGE_VERSION_FULL
|
||||
# Build our image, auth, and push
|
||||
|
||||
echo "starting docker build"
|
||||
docker build --tag ohif/app:$IMAGE_VERSION_FULL .
|
||||
# Build our amd64 image, auth, and push
|
||||
docker build --platform linux/amd64 --tag ohif/app:$IMAGE_VERSION_FULL-amd64 --tag ohif/app:latest-beta-amd64 .
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
|
||||
echo "starting docker push"
|
||||
docker push ohif/app:$IMAGE_VERSION_FULL
|
||||
docker push ohif/app:$IMAGE_VERSION_FULL-amd64
|
||||
docker push ohif/app:latest-beta-amd64
|
||||
fi
|
||||
|
||||
# This is copied from the Cypress orb since the default for cypress/run is node 16 and
|
||||
# we migrated to 18
|
||||
CYPRESS_CUSTOM_RUN:
|
||||
description: |
|
||||
A single, complete job to run Cypress end-to-end tests in your application.
|
||||
executor: cypress-custom
|
||||
parallelism: << parameters.parallelism >>
|
||||
parameters:
|
||||
cypress-cache-key:
|
||||
default: cypress-cache-{{ arch }}-{{ checksum "package.json" }}
|
||||
description: Cache key used to cache the Cypress binary.
|
||||
type: string
|
||||
cypress-cache-path:
|
||||
default: ~/.cache/Cypress
|
||||
description: |
|
||||
By default, this will cache the '~/.cache/Cypress' directory so that the Cypress binary is cached. You can override this by providing your own cache path.
|
||||
type: string
|
||||
cypress-command:
|
||||
default: npx cypress run
|
||||
description: Command used to run your Cypress tests
|
||||
type: string
|
||||
include-branch-in-node-cache-key:
|
||||
default: false
|
||||
description: |
|
||||
If true, this cache will only apply to runs within the same branch. (Adds -{{ .Branch }}- to the node cache key)
|
||||
type: boolean
|
||||
install-browsers:
|
||||
default: false
|
||||
description: |
|
||||
Cypress runs by default in the Electron browser. Use this flag to install additional browsers to run your tests in.
|
||||
This is only needed if you are passing the `--browser` flag in your `cypress-command`.
|
||||
This parameter leverages the `circleci/browser-tools` orb and includes Chrome and FireFox.
|
||||
If you need additional browser support you can set this to false and use an executor with a docker image
|
||||
that includes the browsers of your choosing. See https://hub.docker.com/r/cypress/browsers/tags
|
||||
type: boolean
|
||||
install-command:
|
||||
default: ''
|
||||
description: Overrides the default NPM command (npm ci)
|
||||
type: string
|
||||
node-cache-version:
|
||||
default: v1
|
||||
description:
|
||||
Change the default node cache version if you need to clear the cache for any reason.
|
||||
type: string
|
||||
package-manager:
|
||||
default: npm
|
||||
description: Select the default node package manager to use. NPM v5+ Required.
|
||||
enum:
|
||||
- npm
|
||||
- yarn
|
||||
- yarn-berry
|
||||
type: enum
|
||||
parallelism:
|
||||
default: 4
|
||||
description: |
|
||||
Number of Circle machines to use for load balancing, min 1
|
||||
(requires `parallel` and `record` flags in your `cypress-command`)
|
||||
type: integer
|
||||
post-install:
|
||||
default: ''
|
||||
description: |
|
||||
Additional commands to run after running install but before verifying Cypress and saving cache.
|
||||
type: string
|
||||
start-command:
|
||||
default: ''
|
||||
description: Command used to start your local dev server for Cypress to tests against
|
||||
type: string
|
||||
working-directory:
|
||||
default: ''
|
||||
description: Directory containing package.json
|
||||
type: string
|
||||
DOCKER_BETA_PUBLISH_ARM:
|
||||
<<: *defaults
|
||||
resource_class: arm.large
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Build Docker image for arm64 (Beta)
|
||||
command: |
|
||||
echo $(ls -l)
|
||||
|
||||
# This file will exist if a new version was published by
|
||||
# our command in the previous job.
|
||||
if [[ ! -e version.txt ]]; then
|
||||
echo "don't have version txt"
|
||||
exit 0
|
||||
else
|
||||
echo "Building and pushing ARM64 Docker image from the master branch (beta releases)"
|
||||
rm -f ./.npmrc
|
||||
# Set our version number using vars
|
||||
export IMAGE_VERSION=$(cat version.txt)
|
||||
export IMAGE_VERSION_FULL=v$IMAGE_VERSION
|
||||
echo $IMAGE_VERSION
|
||||
echo $IMAGE_VERSION_FULL
|
||||
# Build our arm64 image, auth, and push
|
||||
docker build --platform linux/arm64 --tag ohif/app:$IMAGE_VERSION_FULL-arm64 --tag ohif/app:latest-beta-arm64 .
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
docker push ohif/app:$IMAGE_VERSION_FULL-arm64
|
||||
docker push ohif/app:latest-beta-arm64
|
||||
fi
|
||||
|
||||
CYPRESS:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
parallelism: 8
|
||||
steps:
|
||||
- install_bun
|
||||
- run:
|
||||
name: Install System Dependencies
|
||||
command: |
|
||||
sudo apt-get update
|
||||
sudo apt-get install -y xvfb libgtk2.0-0 libgtk-3-0 libgbm-dev libnotify-dev libgconf-2-4 libnss3 libxss1 libasound2 libxtst6
|
||||
- run:
|
||||
name: Start Xvfb
|
||||
command: Xvfb :99 -screen 0 1920x1080x24 &
|
||||
background: true
|
||||
- run:
|
||||
name: Export Display Variable
|
||||
command: export DISPLAY=:99
|
||||
- cypress/install:
|
||||
install-command: bun install --no-save
|
||||
package-manager: yarn
|
||||
- cypress/run-tests:
|
||||
cypress-command: |
|
||||
npx wait-on@latest http://localhost:3000 && cd platform/app && npx cypress run --record --parallel
|
||||
start-command: bun run test:data && bun run test:e2e:serve
|
||||
|
||||
DOCKER_MULTIARCH_MANIFEST:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
steps:
|
||||
- cypress/install:
|
||||
cypress-cache-key: << parameters.cypress-cache-key >>
|
||||
cypress-cache-path: << parameters.cypress-cache-path >>
|
||||
include-branch-in-node-cache-key: << parameters.include-branch-in-node-cache-key >>
|
||||
install-browsers: << parameters.install-browsers >>
|
||||
install-command: << parameters.install-command >>
|
||||
node-cache-version: << parameters.node-cache-version >>
|
||||
package-manager: << parameters.package-manager >>
|
||||
post-install: << parameters.post-install >>
|
||||
working-directory: << parameters.working-directory >>
|
||||
- cypress/run-tests:
|
||||
cypress-command: << parameters.cypress-command >>
|
||||
start-command: << parameters.start-command >>
|
||||
working-directory: << parameters.working-directory >>
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Create and push multi-architecture manifest (Release)
|
||||
command: |
|
||||
# This file will exist if a new version was published by
|
||||
# our command in the previous job.
|
||||
if [[ ! -e version.txt ]]; then
|
||||
exit 0
|
||||
else
|
||||
echo "Building and pushing multi-architecture manifest from the master branch (release releases)"
|
||||
rm -f ./.npmrc
|
||||
# Set our version number using vars
|
||||
export IMAGE_VERSION=$(cat version.txt)
|
||||
export IMAGE_VERSION_FULL=v$IMAGE_VERSION
|
||||
echo $IMAGE_VERSION
|
||||
echo $IMAGE_VERSION_FULL
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
|
||||
# Create and push manifest for specific version
|
||||
docker manifest create ohif/app:$IMAGE_VERSION_FULL \
|
||||
--amend ohif/app:$IMAGE_VERSION_FULL-amd64 \
|
||||
--amend ohif/app:$IMAGE_VERSION_FULL-arm64
|
||||
docker manifest push ohif/app:$IMAGE_VERSION_FULL
|
||||
|
||||
# Create and push manifest for "latest" tag
|
||||
docker manifest create ohif/app:latest \
|
||||
--amend ohif/app:latest-amd64 \
|
||||
--amend ohif/app:latest-arm64
|
||||
docker manifest push ohif/app:latest
|
||||
fi
|
||||
|
||||
DOCKER_BETA_MULTIARCH_MANIFEST:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Create and push multi-architecture manifest (Beta)
|
||||
command: |
|
||||
echo $(ls -l)
|
||||
|
||||
# This file will exist if a new version was published by
|
||||
# our command in the previous job.
|
||||
if [[ ! -e version.txt ]]; then
|
||||
exit 0
|
||||
else
|
||||
echo "Building and pushing multi-architecture manifest from the master branch (beta releases)"
|
||||
rm -f ./.npmrc
|
||||
# Set our version number using vars
|
||||
export IMAGE_VERSION=$(cat version.txt)
|
||||
export IMAGE_VERSION_FULL=v$IMAGE_VERSION
|
||||
echo $IMAGE_VERSION
|
||||
echo $IMAGE_VERSION_FULL
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
|
||||
# Create and push manifest for specific beta version
|
||||
docker manifest create ohif/app:$IMAGE_VERSION_FULL \
|
||||
--amend ohif/app:$IMAGE_VERSION_FULL-amd64 \
|
||||
--amend ohif/app:$IMAGE_VERSION_FULL-arm64
|
||||
docker manifest push ohif/app:$IMAGE_VERSION_FULL
|
||||
|
||||
# Create and push manifest for "latest-beta" tag
|
||||
docker manifest create ohif/app:latest-beta \
|
||||
--amend ohif/app:latest-beta-amd64 \
|
||||
--amend ohif/app:latest-beta-arm64
|
||||
docker manifest push ohif/app:latest-beta
|
||||
fi
|
||||
|
||||
workflows:
|
||||
PR_CHECKS:
|
||||
@@ -427,61 +445,12 @@ workflows:
|
||||
filters:
|
||||
branches:
|
||||
ignore: master
|
||||
- UNIT_TESTS:
|
||||
requires:
|
||||
- BUILD_PACKAGES_QUICK
|
||||
- CYPRESS_CUSTOM_RUN:
|
||||
- UNIT_TESTS
|
||||
- CYPRESS:
|
||||
name: 'Cypress Tests'
|
||||
context: cypress
|
||||
matrix:
|
||||
parameters:
|
||||
start-command:
|
||||
- yarn run test:data && yarn run test:e2e:serve
|
||||
install-browsers:
|
||||
- true
|
||||
cypress-command:
|
||||
- 'npx wait-on@latest http://localhost:3000 && cd platform/app && npx cypress run
|
||||
--record --browser chrome --parallel'
|
||||
package-manager:
|
||||
- 'yarn'
|
||||
cypress-cache-key:
|
||||
- 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
cypress-cache-path:
|
||||
- '~/.cache/Cypress'
|
||||
requires:
|
||||
- BUILD_PACKAGES_QUICK
|
||||
|
||||
# PR_OPTIONAL_VISUAL_TESTS:
|
||||
# jobs:
|
||||
# - AWAIT_APPROVAL:
|
||||
# type: approval
|
||||
# # Update hub.docker.org
|
||||
# - cypress/run:
|
||||
# name: 'Generate Percy Snapshots'
|
||||
# executor: cypress/browsers-chrome76
|
||||
# browser: chrome
|
||||
# pre-steps:
|
||||
# - run: 'rm -rf ~/.yarn && yarn -v && yarn global add wait-on'
|
||||
# yarn: true
|
||||
# store_artifacts: false
|
||||
# working_directory: platform/app
|
||||
# build:
|
||||
# yarn test:data && npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
# yarn run build
|
||||
# # start server --> verify running --> percy + chrome + cypress
|
||||
# command: yarn run test:e2e:dist
|
||||
# cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
# no-workspace: true # Don't persist workspace
|
||||
# post-steps:
|
||||
# - store_artifacts:
|
||||
# path: platform/app/cypress/screenshots
|
||||
# - store_artifacts:
|
||||
# path: platform/app/cypress/videos
|
||||
# requires:
|
||||
# - AWAIT_APPROVAL
|
||||
|
||||
# Our master branch deploys to viewer-dev.ohif.org, the viewer.ohif.org is
|
||||
# deployed from the release branch which is more stable and less frequently updated.
|
||||
# viewer-dev.ohif.org
|
||||
DEPLOY_MASTER:
|
||||
jobs:
|
||||
- BUILD:
|
||||
@@ -494,9 +463,14 @@ workflows:
|
||||
- DOCKER_BETA_PUBLISH:
|
||||
requires:
|
||||
- NPM_PUBLISH
|
||||
- DOCKER_BETA_PUBLISH_ARM:
|
||||
requires:
|
||||
- DOCKER_BETA_PUBLISH
|
||||
- DOCKER_BETA_MULTIARCH_MANIFEST:
|
||||
requires:
|
||||
- DOCKER_BETA_PUBLISH_ARM
|
||||
|
||||
# Our release branch deploys to viewer.ohif.org and is more stable and less
|
||||
# frequently updated after being tested in the staging environment.
|
||||
# viewer.ohif.org
|
||||
DEPLOY_RELEASE:
|
||||
jobs:
|
||||
- BUILD:
|
||||
@@ -513,50 +487,9 @@ workflows:
|
||||
- DOCKER_RELEASE_PUBLISH:
|
||||
requires:
|
||||
- NPM_PUBLISH
|
||||
|
||||
###
|
||||
# Unit and E2E tests have already run for PR_CHECKS
|
||||
# Re-running should not gain us any confidence here
|
||||
###
|
||||
# RELEASE:
|
||||
# jobs:
|
||||
# - NPM_PUBLISH:
|
||||
# filters:
|
||||
# branches:
|
||||
# only: master
|
||||
# - DOCS_PUBLISH:
|
||||
# filters:
|
||||
# branches:
|
||||
# only: master
|
||||
# # Update base branch snapshots
|
||||
# # and record a Cypress dashboard test run
|
||||
# - cypress/run:
|
||||
# name: 'Generate Percy Snapshots'
|
||||
# executor: cypress/browsers-chrome76
|
||||
# browser: chrome
|
||||
# pre-steps:
|
||||
# - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
|
||||
# add wait-on' # Use yarn latest
|
||||
# yarn: true
|
||||
# store_artifacts: false
|
||||
# working_directory: platform/app
|
||||
# build:
|
||||
# npx cross-env QUICK_BUILD=true APP_CONFIG=config/e2e.js yarn run
|
||||
# build
|
||||
# # start server --> verify running --> percy + chrome + cypress
|
||||
# command: yarn run test:e2e:dist
|
||||
# cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
# no-workspace: true # Don't persist workspace
|
||||
# post-steps:
|
||||
# - store_artifacts:
|
||||
# path: platform/app/cypress/screenshots
|
||||
# - store_artifacts:
|
||||
# path: platform/app/cypress/videos
|
||||
# - store_test_results:
|
||||
# path: platform/app/cypress/results
|
||||
# filters:
|
||||
# branches:
|
||||
# only: master
|
||||
# - DOCKER_MASTER_PUBLISH:
|
||||
# requires:
|
||||
# - NPM_PUBLISH
|
||||
- DOCKER_RELEASE_PUBLISH_ARM:
|
||||
requires:
|
||||
- DOCKER_RELEASE_PUBLISH
|
||||
- DOCKER_MULTIARCH_MANIFEST:
|
||||
requires:
|
||||
- DOCKER_RELEASE_PUBLISH_ARM
|
||||
@@ -1,12 +1,13 @@
|
||||
server {
|
||||
gzip_static always;
|
||||
gzip_proxied expired no-cache no-store private auth;
|
||||
gunzip on;
|
||||
listen ${PORT} default_server;
|
||||
listen [::]:${PORT} default_server;
|
||||
location / {
|
||||
root /usr/share/nginx/html;
|
||||
index index.html index.htm;
|
||||
try_files $uri $uri/ /index.html;
|
||||
add_header Cross-Origin-Opener-Policy same-origin;
|
||||
add_header Cross-Origin-Embedder-Policy require-corp;
|
||||
try_files $uri $uri/ ${PUBLIC_URL}index.html;
|
||||
add_header Cross-Origin-Resource-Policy same-origin;
|
||||
proxy_set_header Host $host;
|
||||
proxy_set_header X-Real-IP $remote_addr;
|
||||
|
||||
@@ -7,8 +7,6 @@ server {
|
||||
root /usr/share/nginx/html;
|
||||
index index.html index.htm;
|
||||
try_files $uri $uri/ /index.html;
|
||||
add_header Cross-Origin-Opener-Policy same-origin;
|
||||
add_header Cross-Origin-Embedder-Policy require-corp;
|
||||
add_header Cross-Origin-Resource-Policy same-origin;
|
||||
proxy_set_header Host $host;
|
||||
proxy_set_header X-Real-IP $remote_addr;
|
||||
|
||||
@@ -2,16 +2,34 @@
|
||||
|
||||
if [ -n "$SSL_PORT" ]
|
||||
then
|
||||
envsubst '${SSL_PORT}:${PORT}' < /usr/src/default.ssl.conf.template > /etc/nginx/conf.d/default.conf
|
||||
envsubst '${SSL_PORT}:${PORT}' < /usr/src/default.ssl.conf.template | envsubst '${PUBLIC_URL}' > /etc/nginx/conf.d/default.conf
|
||||
else
|
||||
envsubst '${PORT}' < /usr/src/default.conf.template > /etc/nginx/conf.d/default.conf
|
||||
envsubst '${PORT}:${PUBLIC_URL}' < /usr/src/default.conf.template > /etc/nginx/conf.d/default.conf
|
||||
fi
|
||||
|
||||
if [ -n "$APP_CONFIG" ]
|
||||
then
|
||||
echo "$APP_CONFIG" > /usr/share/nginx/html/app-config.js
|
||||
if [ -n "$APP_CONFIG" ]; then
|
||||
echo "$APP_CONFIG" > /usr/share/nginx/html${PUBLIC_URL}app-config.js
|
||||
echo "Using custom APP_CONFIG environment variable"
|
||||
else
|
||||
echo "Not using custom APP_CONFIG"
|
||||
fi
|
||||
|
||||
if [ -f /usr/share/nginx/html${PUBLIC_URL}app-config.js ]; then
|
||||
if [ -s /usr/share/nginx/html${PUBLIC_URL}app-config.js ]; then
|
||||
echo "Detected non-empty app-config.js. Ensuring .gz file is updated..."
|
||||
rm -f /usr/share/nginx/html${PUBLIC_URL}app-config.js.gz
|
||||
gzip /usr/share/nginx/html${PUBLIC_URL}app-config.js
|
||||
touch /usr/share/nginx/html${PUBLIC_URL}app-config.js
|
||||
echo "Compressed app-config.js to app-config.js.gz"
|
||||
else
|
||||
echo "app-config.js is empty. Skipping compression."
|
||||
fi
|
||||
else
|
||||
echo "No app-config.js file found. Skipping compression."
|
||||
fi
|
||||
|
||||
|
||||
|
||||
if [ -n "$CLIENT_ID" ] || [ -n "$HEALTHCARE_API_ENDPOINT" ]
|
||||
then
|
||||
# If CLIENT_ID is specified, use the google.js configuration with the modified ID
|
||||
@@ -40,6 +58,6 @@ if [ -n "$CLIENT_ID" ] || [ -n "$HEALTHCARE_API_ENDPOINT" ]
|
||||
cp /usr/share/nginx/html/google.js /usr/share/nginx/html/app-config.js
|
||||
fi
|
||||
|
||||
echo "Starting Nginx to serve the OHIF Viewer..."
|
||||
echo "Starting Nginx to serve the OHIF Viewer on ${PUBLIC_URL}"
|
||||
|
||||
exec "$@"
|
||||
@@ -0,0 +1,4 @@
|
||||
find platform/app/dist -name "*.js" -exec gzip -9 "{}" \; -exec touch "{}" \;
|
||||
find platform/app/dist -name "*.map" -exec gzip -9 "{}" \; -exec touch "{}" \;
|
||||
find platform/app/dist -name "*.css" -exec gzip -9 "{}" \; -exec touch "{}" \;
|
||||
find platform/app/dist -name "*.svg" -exec gzip -9 "{}" \; -exec touch "{}" \;
|
||||
+4
-4
@@ -8,11 +8,11 @@
|
||||
# have this file as their .dockerignore.
|
||||
|
||||
# Output
|
||||
dist/
|
||||
build/
|
||||
**/dist/
|
||||
**/build/
|
||||
|
||||
# Dependencies
|
||||
node_modules/
|
||||
**/node_modules/
|
||||
|
||||
# Root
|
||||
README.md
|
||||
@@ -33,5 +33,5 @@ dockerfile
|
||||
.scripts/
|
||||
.vscode/
|
||||
coverage/
|
||||
docs/
|
||||
platform/docs/
|
||||
testdata/
|
||||
+2
-1
@@ -18,7 +18,8 @@
|
||||
},
|
||||
"rules": {
|
||||
// Enforce consistent brace style for all control statements for readability
|
||||
"curly": "error"
|
||||
"curly": "error",
|
||||
"import/no-anonymous-default-export": "off"
|
||||
},
|
||||
"globals": {
|
||||
"cy": true,
|
||||
|
||||
@@ -0,0 +1,19 @@
|
||||
version: 2
|
||||
enable-beta-ecosystems: true
|
||||
updates:
|
||||
- package-ecosystem: 'bun'
|
||||
directory: '/'
|
||||
schedule:
|
||||
interval: 'daily'
|
||||
labels: ['dependencies']
|
||||
commit-message:
|
||||
prefix: 'chore'
|
||||
include: 'scope'
|
||||
- package-ecosystem: 'npm'
|
||||
directory: '/'
|
||||
schedule:
|
||||
interval: 'daily'
|
||||
labels: ['dependencies']
|
||||
commit-message:
|
||||
prefix: 'chore'
|
||||
include: 'scope'
|
||||
@@ -64,7 +64,7 @@ body:
|
||||
attributes:
|
||||
label: 'Node version'
|
||||
description: 'Your Node.js version.'
|
||||
placeholder: 'e.g., 18.16.1'
|
||||
placeholder: 'e.g., 20.18.1'
|
||||
validations:
|
||||
required: true
|
||||
- type: input
|
||||
|
||||
@@ -8,24 +8,28 @@ jobs:
|
||||
playwright-tests:
|
||||
timeout-minutes: 60
|
||||
runs-on: ubuntu-latest
|
||||
container:
|
||||
image: mcr.microsoft.com/playwright:v1.51.1-noble
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
shardIndex: [1, 2, 3, 4, 5]
|
||||
shardTotal: [5]
|
||||
shardIndex: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10]
|
||||
shardTotal: [10]
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- name: Install unzip
|
||||
run: apt-get update && apt-get install -y unzip
|
||||
- uses: oven-sh/setup-bun@v2
|
||||
- uses: actions/setup-node@v4
|
||||
with:
|
||||
node-version: 18
|
||||
node-version: 20
|
||||
- name: Install dependencies
|
||||
run: yarn install --frozen-lockfile
|
||||
- name: Install Playwright Browsers
|
||||
run: npx playwright install --with-deps
|
||||
run: bun install --frozen-lockfile
|
||||
- name: Set up Git safe directory
|
||||
run: git config --global --add safe.directory /__w/Viewers/Viewers
|
||||
- name: Run Playwright tests
|
||||
run:
|
||||
export NODE_OPTIONS="--max_old_space_size=8192" && npx playwright test --shard=${{
|
||||
matrix.shardIndex }}/${{ matrix.shardTotal }}
|
||||
run: |
|
||||
NODE_OPTIONS="--max_old_space_size=8192" TEST_ENV=true bun x playwright test --shard=${{ matrix.shardIndex }}/${{ matrix.shardTotal }}
|
||||
|
||||
- name: Upload blob report to GitHub Actions Artifacts
|
||||
if: ${{ !cancelled() }}
|
||||
@@ -39,14 +43,20 @@ jobs:
|
||||
if: ${{ !cancelled() }}
|
||||
needs: [playwright-tests]
|
||||
runs-on: ubuntu-latest
|
||||
container:
|
||||
image: mcr.microsoft.com/playwright:v1.48.1-focal
|
||||
steps:
|
||||
- name: Install unzip
|
||||
run: apt-get update && apt-get install -y unzip
|
||||
- uses: oven-sh/setup-bun@v2
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/setup-node@v4
|
||||
with:
|
||||
node-version: 18
|
||||
node-version: 20
|
||||
- name: Install dependencies
|
||||
run: yarn install --frozen-lockfile
|
||||
|
||||
run: bun install --frozen-lockfile
|
||||
- name: Set up Git safe directory
|
||||
run: git config --global --add safe.directory /__w/Viewers/Viewers
|
||||
- name: Download blob reports from GitHub Actions Artifacts
|
||||
uses: actions/download-artifact@v4
|
||||
with:
|
||||
@@ -55,7 +65,7 @@ jobs:
|
||||
merge-multiple: true
|
||||
|
||||
- name: Merge into HTML Report
|
||||
run: npx playwright merge-reports --reporter html ./all-blob-reports
|
||||
run: bun x playwright merge-reports --reporter html ./all-blob-reports
|
||||
|
||||
- name: Upload HTML report
|
||||
uses: actions/upload-artifact@v4
|
||||
|
||||
@@ -1,5 +1,6 @@
|
||||
# Packages
|
||||
node_modules
|
||||
.cursor/
|
||||
|
||||
# Output
|
||||
build
|
||||
|
||||
+1
-1
@@ -1 +1 @@
|
||||
18.16.1
|
||||
20.9.0
|
||||
@@ -4,7 +4,7 @@
|
||||
* The JSON file can be used to load the study into the OHIF Viewer. You can get more detail
|
||||
* in the DICOM JSON Data source on docs.ohif.org
|
||||
*
|
||||
* Usage: node dicomStudyToJSONLaunch.js <studyFolder> <urlPrefix> <outputJSONPath> <optional scheme>
|
||||
* Usage: node dicom-json-generator.js <studyFolder> <urlPrefix> <outputJSONPath> <optional scheme>
|
||||
*
|
||||
* params:
|
||||
* - studyFolder: path to the study folder which contains the DICOM files
|
||||
@@ -30,7 +30,7 @@ const [studyDirectory, urlPrefix, outputPath, scheme = 'dicomweb'] = args;
|
||||
|
||||
if (args.length < 3 || args.length > 4) {
|
||||
console.error(
|
||||
'Usage: node dicomStudyToJSONLaunch.js <studyFolder> <urlPrefix> <outputJSONPath> [scheme]'
|
||||
'Usage: node dicom-json-generator.js <studyFolder> <urlPrefix> <outputJSONPath> [scheme]'
|
||||
);
|
||||
process.exit(1);
|
||||
}
|
||||
|
||||
+10
-14
@@ -49,6 +49,7 @@ const defineValues = {
|
||||
'process.env.LOCIZE_PROJECTID': JSON.stringify(process.env.LOCIZE_PROJECTID || ''),
|
||||
'process.env.LOCIZE_API_KEY': JSON.stringify(process.env.LOCIZE_API_KEY || ''),
|
||||
'process.env.REACT_APP_I18N_DEBUG': JSON.stringify(process.env.REACT_APP_I18N_DEBUG || ''),
|
||||
'process.env.TEST_ENV': JSON.stringify(process.env.TEST_ENV || ''),
|
||||
};
|
||||
|
||||
// Only redefine updated values. This avoids warning messages in the logs
|
||||
@@ -57,10 +58,6 @@ if (!process.env.APP_CONFIG) {
|
||||
}
|
||||
|
||||
module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
if (!process.env.NODE_ENV) {
|
||||
throw new Error('process.env.NODE_ENV not set');
|
||||
}
|
||||
|
||||
const mode = NODE_ENV === 'production' ? 'production' : 'development';
|
||||
const isProdBuild = NODE_ENV === 'production';
|
||||
const isQuickBuild = QUICK_BUILD === 'true';
|
||||
@@ -98,7 +95,7 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
type: 'filesystem',
|
||||
},
|
||||
module: {
|
||||
noParse: [/(codec)/, /(dicomicc)/],
|
||||
noParse: [/(dicomicc)/],
|
||||
rules: [
|
||||
...(isProdBuild
|
||||
? []
|
||||
@@ -108,7 +105,7 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
exclude: /node_modules/,
|
||||
loader: 'babel-loader',
|
||||
options: {
|
||||
plugins: ['react-refresh/babel'],
|
||||
plugins: isProdBuild ? [] : ['react-refresh/babel'],
|
||||
},
|
||||
},
|
||||
]),
|
||||
@@ -144,11 +141,6 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
},
|
||||
],
|
||||
},
|
||||
{
|
||||
test: /\.js$/,
|
||||
enforce: 'pre',
|
||||
use: 'source-map-loader',
|
||||
},
|
||||
transpileJavaScriptRule(mode),
|
||||
loadWebWorkersRule,
|
||||
// loadShadersRule,
|
||||
@@ -177,6 +169,10 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
},
|
||||
],
|
||||
},
|
||||
{
|
||||
test: /\.(woff|woff2|eot|ttf|otf)$/i,
|
||||
type: 'asset/resource',
|
||||
},
|
||||
], //.concat(vtkRules),
|
||||
},
|
||||
resolve: {
|
||||
@@ -188,8 +184,8 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
'@hooks': path.resolve(__dirname, '../platform/app/src/hooks'),
|
||||
'@routes': path.resolve(__dirname, '../platform/app/src/routes'),
|
||||
'@state': path.resolve(__dirname, '../platform/app/src/state'),
|
||||
'@cornerstonejs/dicom-image-loader':
|
||||
'@cornerstonejs/dicom-image-loader/dist/dynamic-import/cornerstoneDICOMImageLoader.min.js',
|
||||
'dicom-microscopy-viewer':
|
||||
'dicom-microscopy-viewer/dist/dynamic-import/dicomMicroscopyViewer.min.js',
|
||||
},
|
||||
// Which directories to search when resolving modules
|
||||
modules: [
|
||||
@@ -217,7 +213,7 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
new webpack.ProvidePlugin({
|
||||
Buffer: ['buffer', 'Buffer'],
|
||||
}),
|
||||
...(isProdBuild ? [] : [new ReactRefreshWebpackPlugin()]),
|
||||
...(isProdBuild ? [] : [new ReactRefreshWebpackPlugin({ overlay: false })]),
|
||||
// Uncomment to generate bundle analyzer
|
||||
// new BundleAnalyzerPlugin(),
|
||||
],
|
||||
|
||||
+1802
File diff suppressed because it is too large.
Load diff
@@ -288,3 +288,10 @@ Bloch, B. Nicolas, Jain, Ashali, & Jaffe, C. Carl. (2015). BREAST-DIAGNOSIS [Dat
|
||||
Comstock, C. E., Gatsonis, C., Newstead, G. M., Snyder, B. S., Gareen, I. F., Bergin, J. T., Rahbar, H., Sung, J. S., Jacobs, C., Harvey, J. A., Nicholson, M. H., Ward, R. C., Holt, J., Prather, A., Miller, K. D., Schnall, M. D., & Kuhl, C. K. (2023). Abbreviated Breast MRI and Digital Tomosynthesis Mammography in Screening Women With Dense Breasts (EA1141) (Version 1) [dataset]. The Cancer Imaging Archive. https://doi.org/10.7937/2BAS-HR33
|
||||
|
||||
https://www.cancerimagingarchive.net/collection/ea1141/
|
||||
|
||||
### 1.2.276.0.7230010.3.1.2.2155604110.4180.1021041295.21
|
||||
|
||||
From OFFIS DICOM-Team
|
||||
|
||||
https://www.offis.de/
|
||||
OFFIS DICOM-Team
|
||||
+56
-31
@@ -1,3 +1,4 @@
|
||||
# syntax=docker/dockerfile:1.7-labs
|
||||
# This dockerfile is used to publish the `ohif/app` image on dockerhub.
|
||||
#
|
||||
# It's a good example of how to build our static application and package it
|
||||
@@ -19,61 +20,85 @@
|
||||
#
|
||||
|
||||
|
||||
# syntax=docker/dockerfile:1.7-labs
|
||||
# This dockerfile is used to publish the `ohif/app` image on dockerhub.
|
||||
#
|
||||
# It's a good example of how to build our static application and package it
|
||||
# with a web server capable of hosting it as static content.
|
||||
#
|
||||
# docker build
|
||||
# --------------
|
||||
# If you would like to use this dockerfile to build and tag an image, make sure
|
||||
# you set the context to the project's root directory:
|
||||
# https://docs.docker.com/engine/reference/commandline/build/
|
||||
#
|
||||
#
|
||||
# SUMMARY
|
||||
# --------------
|
||||
# This dockerfile is used as an input for a second stage to make things run faster.
|
||||
#
|
||||
|
||||
|
||||
# Stage 1: Build the application
|
||||
# docker build -t ohif/viewer:latest .
|
||||
FROM node:18.16.1-slim as json-copier
|
||||
|
||||
RUN mkdir /usr/src/app
|
||||
WORKDIR /usr/src/app
|
||||
|
||||
COPY ["package.json", "yarn.lock", "preinstall.js", "./"]
|
||||
COPY extensions /usr/src/app/extensions
|
||||
COPY modes /usr/src/app/modes
|
||||
COPY platform /usr/src/app/platform
|
||||
|
||||
# Find and remove non-package.json files
|
||||
#RUN find extensions \! -name "package.json" -mindepth 2 -maxdepth 2 -print | xargs rm -rf
|
||||
#RUN find modes \! -name "package.json" -mindepth 2 -maxdepth 2 -print | xargs rm -rf
|
||||
#RUN find platform \! -name "package.json" -mindepth 2 -maxdepth 2 -print | xargs rm -rf
|
||||
|
||||
# Copy Files
|
||||
FROM node:18.16.1-slim as builder
|
||||
FROM node:20.18.1-slim as builder
|
||||
|
||||
RUN apt-get update && apt-get install -y build-essential python3
|
||||
|
||||
|
||||
RUN mkdir /usr/src/app
|
||||
WORKDIR /usr/src/app
|
||||
RUN npm install -g bun
|
||||
# RUN npm install -g lerna@7.4.2
|
||||
ENV PATH=/usr/src/app/node_modules/.bin:$PATH
|
||||
|
||||
COPY --from=json-copier /usr/src/app .
|
||||
|
||||
# Do an initial install and then a final install
|
||||
COPY package.json yarn.lock preinstall.js lerna.json ./
|
||||
COPY --parents ./addOns/package.json ./addOns/*/*/package.json ./extensions/*/package.json ./modes/*/package.json ./platform/*/package.json ./
|
||||
# Run the install before copying the rest of the files
|
||||
RUN yarn config set workspaces-experimental true
|
||||
RUN yarn install --frozen-lockfile --verbose
|
||||
|
||||
COPY . .
|
||||
RUN bun pm cache rm
|
||||
RUN bun install
|
||||
# Copy the local directory
|
||||
COPY --link --exclude=yarn.lock --exclude=package.json --exclude=Dockerfile . .
|
||||
|
||||
# To restore workspaces symlinks
|
||||
RUN yarn install --frozen-lockfile --verbose
|
||||
|
||||
ENV PATH /usr/src/app/node_modules/.bin:$PATH
|
||||
# Build here
|
||||
# After install it should hopefully be stable until the local directory changes
|
||||
ENV QUICK_BUILD true
|
||||
# ENV GENERATE_SOURCEMAP=false
|
||||
# ENV REACT_APP_CONFIG=config/default.js
|
||||
ARG APP_CONFIG=config/default.js
|
||||
ARG PUBLIC_URL=/
|
||||
ENV PUBLIC_URL=${PUBLIC_URL}
|
||||
|
||||
RUN yarn run build
|
||||
RUN bun run show:config
|
||||
RUN bun run build
|
||||
|
||||
# Precompress files
|
||||
RUN chmod u+x .docker/compressDist.sh
|
||||
RUN ./.docker/compressDist.sh
|
||||
|
||||
# Stage 3: Bundle the built application into a Docker container
|
||||
# which runs Nginx using Alpine Linux
|
||||
FROM nginxinc/nginx-unprivileged:1.25-alpine as final
|
||||
FROM nginxinc/nginx-unprivileged:1.27-alpine as final
|
||||
#RUN apk add --no-cache bash
|
||||
ENV PORT=80
|
||||
ARG PUBLIC_URL=/
|
||||
ENV PUBLIC_URL=${PUBLIC_URL}
|
||||
ARG PORT=80
|
||||
ENV PORT=${PORT}
|
||||
RUN rm /etc/nginx/conf.d/default.conf
|
||||
USER nginx
|
||||
COPY --chown=nginx:nginx .docker/Viewer-v3.x /usr/src
|
||||
RUN chmod 777 /usr/src/entrypoint.sh
|
||||
COPY --from=builder /usr/src/app/platform/app/dist /usr/share/nginx/html
|
||||
COPY --from=builder /usr/src/app/platform/app/dist /usr/share/nginx/html${PUBLIC_URL}
|
||||
# Copy paths that are renamed/redirected generally
|
||||
# Microscopy libraries depend on root level include, so must be copied
|
||||
COPY --from=builder /usr/src/app/platform/app/dist/dicom-microscopy-viewer /usr/share/nginx/html/dicom-microscopy-viewer
|
||||
|
||||
# In entrypoint.sh, app-config.js might be overwritten, so chmod it to be writeable.
|
||||
# The nginx user cannot chmod it, so change to root.
|
||||
USER root
|
||||
RUN chmod 666 /usr/share/nginx/html/app-config.js
|
||||
RUN chown -R nginx:nginx /usr/share/nginx/html
|
||||
USER nginx
|
||||
ENTRYPOINT ["/usr/src/entrypoint.sh"]
|
||||
CMD ["nginx", "-g", "daemon off;"]
|
||||
@@ -1,5 +1,4 @@
|
||||
<!-- prettier-ignore-start -->
|
||||
<!-- markdownlint-disable -->
|
||||
<div align="center">
|
||||
<h1>OHIF Medical Imaging Viewer</h1>
|
||||
<p><strong>The OHIF Viewer</strong> is a zero-footprint medical image viewer
|
||||
@@ -135,7 +134,7 @@ Here is a schematic representation of our development workflow:
|
||||
|
||||
### Requirements
|
||||
|
||||
- [Yarn 1.17.3+](https://yarnpkg.com/en/docs/install)
|
||||
- [Yarn 1.20.0+](https://yarnpkg.com/en/docs/install)
|
||||
- [Node 18+](https://nodejs.org/en/)
|
||||
- Yarn Workspaces should be enabled on your machine:
|
||||
- `yarn config set workspaces-experimental true`
|
||||
@@ -171,12 +170,13 @@ also supports a number of commands that can be found in their respective
|
||||
| Yarn Commands | Description |
|
||||
| ---------------------------- | ------------------------------------------------------------- |
|
||||
| **Develop** | |
|
||||
| `dev` or `start` | Default development experience for Viewer |
|
||||
| `dev` | Default development experience for Viewer |
|
||||
| `dev:fast` | Our experimental fast dev mode that uses rsbuild instead of webpack |
|
||||
| `test:unit` | Jest multi-project test runner; overall coverage |
|
||||
| **Deploy** | |
|
||||
| `build`\* | Builds production output for our PWA Viewer | |
|
||||
|
||||
\* - For more information on our different builds, check out our [Deploy
|
||||
\* - For more information on different builds, check out our [Deploy
|
||||
Docs][deployment-docs]
|
||||
|
||||
## Project
|
||||
|
||||
+1391
File diff suppressed because it is too large.
Load diff
+9
-6
@@ -1,7 +1,7 @@
|
||||
{
|
||||
"name": "@externals/devDependencies",
|
||||
"description": "External dev dependencies - put dev build dependencies here",
|
||||
"version": "3.9.0-beta.102",
|
||||
"version": "3.10.2",
|
||||
"license": "MIT",
|
||||
"private": true,
|
||||
"engines": {
|
||||
@@ -10,10 +10,10 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@kitware/vtk.js": "30.4.1",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"clsx": "^2.1.1",
|
||||
"core-js": "^3.2.1",
|
||||
"moment": "^2.9.4"
|
||||
"moment": "^2.30.1"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"react": "^18.3.1",
|
||||
@@ -21,7 +21,11 @@
|
||||
},
|
||||
"devDependencies": {
|
||||
"@pmmmwh/react-refresh-webpack-plugin": "^0.5.15",
|
||||
"@rsbuild/core": "^1.1.13",
|
||||
"@rsbuild/plugin-node-polyfill": "1.2.0",
|
||||
"@rsbuild/plugin-react": "^1.1.0",
|
||||
"@svgr/webpack": "^8.1.0",
|
||||
"@swc/helpers": "^0.5.15",
|
||||
"@types/jest": "^27.5.0",
|
||||
"@typescript-eslint/eslint-plugin": "^6.3.0",
|
||||
"@typescript-eslint/parser": "^6.3.0",
|
||||
@@ -68,16 +72,15 @@
|
||||
"prettier-plugin-tailwindcss": "^0.5.4",
|
||||
"react-refresh": "^0.14.2",
|
||||
"semver": "^7.5.1",
|
||||
"serve": "^14.2.0",
|
||||
"serve": "^14.2.4",
|
||||
"shader-loader": "^1.3.1",
|
||||
"shx": "^0.3.3",
|
||||
"source-map-loader": "^4.0.1",
|
||||
"start-server-and-test": "^1.10.0",
|
||||
"style-loader": "^1.0.0",
|
||||
"stylus": "^0.59.0",
|
||||
"stylus-loader": "^7.1.3",
|
||||
"terser-webpack-plugin": "^5.1.4",
|
||||
"typescript": "4.6.4",
|
||||
"typescript": "5.5.4",
|
||||
"unused-webpack-plugin": "2.4.0",
|
||||
"webpack": "5.94.0",
|
||||
"webpack-bundle-analyzer": "^4.8.0",
|
||||
|
||||
+1376
File diff suppressed because it is too large.
Load diff
+1
-1
@@ -1,7 +1,7 @@
|
||||
{
|
||||
"name": "@externals/dicom-microscopy-viewer",
|
||||
"description": "External reference to dicom-microscopy-viewer",
|
||||
"version": "3.9.0-beta.102",
|
||||
"version": "3.10.2",
|
||||
"license": "MIT",
|
||||
"dependencies": {
|
||||
"dicom-microscopy-viewer": "^0.46.1"
|
||||
|
||||
+2
-2
@@ -38,14 +38,14 @@
|
||||
"resolutions": {
|
||||
"**/@babel/runtime": "^7.20.13",
|
||||
"commander": "8.3.0",
|
||||
"dcmjs": ">=0.33.0",
|
||||
"dcmjs": "0.38.0",
|
||||
"dicomweb-client": ">=0.10.4",
|
||||
"nth-check": "^2.1.1",
|
||||
"trim-newlines": "^5.0.0",
|
||||
"glob-parent": "^6.0.2",
|
||||
"trim": "^1.0.0",
|
||||
"package-json": "^8.1.0",
|
||||
"typescript": "4.6.4",
|
||||
"typescript": "5.5.4",
|
||||
"sharp": "^0.32.6"
|
||||
}
|
||||
}
|
||||
@@ -1,6 +1,4 @@
|
||||
// https://babeljs.io/docs/en/options#babelrcroots
|
||||
const { extendDefaultPlugins } = require('svgo');
|
||||
|
||||
module.exports = {
|
||||
babelrcRoots: ['./platform/*', './extensions/*', './modes/*'],
|
||||
presets: ['@babel/preset-env', '@babel/preset-react', '@babel/preset-typescript'],
|
||||
@@ -51,7 +49,6 @@ module.exports = {
|
||||
'@babel/preset-react',
|
||||
'@babel/preset-typescript',
|
||||
],
|
||||
plugins: ['react-refresh/babel'],
|
||||
ignore: ['**/*.test.jsx', '**/*.test.js', '__snapshots__', '__tests__'],
|
||||
},
|
||||
},
|
||||
|
||||
+1
-1
@@ -1 +1 @@
|
||||
06104257402e872d447e59cb166184d9a3548f8b
|
||||
36813e0c2f1ea48953714e8e48aff6e9d4516449
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-pmap",
|
||||
"version": "3.9.0-beta.102",
|
||||
"version": "3.10.2",
|
||||
"description": "DICOM Parametric Map read workflow",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -33,10 +33,10 @@
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.9.0-beta.102",
|
||||
"@ohif/extension-cornerstone": "3.9.0-beta.102",
|
||||
"@ohif/extension-default": "3.9.0-beta.102",
|
||||
"@ohif/i18n": "3.9.0-beta.102",
|
||||
"@ohif/core": "3.10.2",
|
||||
"@ohif/extension-cornerstone": "3.10.2",
|
||||
"@ohif/extension-default": "3.10.2",
|
||||
"@ohif/i18n": "3.10.2",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^18.3.1",
|
||||
"react-dom": "^18.3.1",
|
||||
@@ -46,9 +46,9 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^1.86.0",
|
||||
"@cornerstonejs/core": "^1.86.0",
|
||||
"@kitware/vtk.js": "30.4.1",
|
||||
"@cornerstonejs/adapters": "^3.11.6",
|
||||
"@cornerstonejs/core": "^3.11.6",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"react-color": "^2.19.3"
|
||||
}
|
||||
}
|
||||
@@ -97,7 +97,7 @@ function _getDisplaySetsFromSeries(
|
||||
};
|
||||
|
||||
// Does not get the referenced volumeId during parametric displaySet creation because the
|
||||
// referenced displaySet is still not avaialble (getDisplaySetByUID returns `undefined`).
|
||||
// referenced displaySet is still not available (getDisplaySetByUID returns `undefined`).
|
||||
displaySet.getReferencedVolumeId = () => {
|
||||
if (displaySet.referencedVolumeId) {
|
||||
return displaySet.referencedVolumeId;
|
||||
@@ -119,6 +119,22 @@ function _getDisplaySetsFromSeries(
|
||||
return [displaySet];
|
||||
}
|
||||
|
||||
const getRangeFromPixelData = (pixelData: Float32Array) => {
|
||||
let lowest = pixelData[0];
|
||||
let highest = pixelData[0];
|
||||
|
||||
for (let i = 1; i < pixelData.length; i++) {
|
||||
if (pixelData[i] < lowest) {
|
||||
lowest = pixelData[i];
|
||||
}
|
||||
if (pixelData[i] > highest) {
|
||||
highest = pixelData[i];
|
||||
}
|
||||
}
|
||||
|
||||
return [lowest, highest];
|
||||
};
|
||||
|
||||
async function _load(
|
||||
displaySet,
|
||||
servicesManager: AppTypes.ServicesManager,
|
||||
@@ -132,11 +148,11 @@ async function _load(
|
||||
return volumeLoadObject.promise;
|
||||
}
|
||||
|
||||
displaySet.loadStatus.loading = true;
|
||||
displaySet.loading = true;
|
||||
displaySet.isLoaded = false;
|
||||
|
||||
// We don't want to fire multiple loads, so we'll wait for the first to finish
|
||||
// and also return the same promise to any other callers.
|
||||
// loadPromises[SOPInstanceUID] = new Promise(async (resolve, reject) => {
|
||||
const promise = _loadParametricMap({
|
||||
extensionManager,
|
||||
displaySet,
|
||||
@@ -149,18 +165,26 @@ async function _load(
|
||||
|
||||
promise
|
||||
.then(() => {
|
||||
displaySet.loadStatus.loading = false;
|
||||
displaySet.loadStatus.loaded = true;
|
||||
displaySet.loading = false;
|
||||
displaySet.isLoaded = true;
|
||||
// Broadcast that loading is complete
|
||||
servicesManager.services.segmentationService._broadcastEvent(
|
||||
servicesManager.services.segmentationService.EVENTS.SEGMENTATION_LOADING_COMPLETE,
|
||||
{
|
||||
pmapDisplaySet: displaySet,
|
||||
}
|
||||
);
|
||||
})
|
||||
.catch(err => {
|
||||
displaySet.loadStatus.loading = false;
|
||||
displaySet.loading = false;
|
||||
displaySet.isLoaded = false;
|
||||
throw err;
|
||||
});
|
||||
|
||||
return promise;
|
||||
}
|
||||
|
||||
async function _loadParametricMap({ extensionManager, displaySet, headers }: withAppTypes) {
|
||||
async function _loadParametricMap({ displaySet, headers }: withAppTypes) {
|
||||
const arrayBuffer = await dicomLoaderService.findDicomDataPromise(displaySet, null, headers);
|
||||
const referencedVolumeId = displaySet.getReferencedVolumeId();
|
||||
const cachedReferencedVolume = cache.getVolume(referencedVolumeId);
|
||||
@@ -189,9 +213,12 @@ async function _loadParametricMap({ extensionManager, displaySet, headers }: wit
|
||||
},
|
||||
});
|
||||
|
||||
derivedVolume.getScalarData().set(pixelData);
|
||||
|
||||
const range = derivedVolume.imageData.getPointData().getScalars().getRange();
|
||||
const newPixelData = new TypedArrayConstructor(pixelData.length);
|
||||
for (let i = 0; i < pixelData.length; i++) {
|
||||
newPixelData[i] = pixelData[i] * 100;
|
||||
}
|
||||
derivedVolume.voxelManager.setCompleteScalarDataArray(newPixelData);
|
||||
const range = getRangeFromPixelData(newPixelData);
|
||||
const windowLevel = csUtils.windowLevel.toWindowLevel(range[0], range[1]);
|
||||
|
||||
derivedVolume.metadata.voiLut = [windowLevel];
|
||||
|
||||
@@ -1,6 +0,0 @@
|
||||
function createPMAPToolGroupAndAddTools(ToolGroupService, customizationService, toolGroupId) {
|
||||
const { tools } = customizationService.get('cornerstone.overlayViewportTools') ?? {};
|
||||
return ToolGroupService.createToolGroupAndAddTools(toolGroupId, tools);
|
||||
}
|
||||
|
||||
export default createPMAPToolGroupAndAddTools;
|
||||
@@ -1,22 +1,29 @@
|
||||
import PropTypes from 'prop-types';
|
||||
import React, { useCallback, useEffect, useRef } from 'react';
|
||||
import { useViewportGrid } from '@ohif/ui';
|
||||
import createPMAPToolGroupAndAddTools from '../utils/initPMAPToolGroup';
|
||||
|
||||
const PMAP_TOOLGROUP_BASE_NAME = 'PMAPToolGroup';
|
||||
import React, { useCallback, useEffect, useRef, useState } from 'react';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
|
||||
function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
const { displaySets, viewportOptions, displaySetOptions, servicesManager, extensionManager } =
|
||||
props;
|
||||
const {
|
||||
displaySets,
|
||||
children,
|
||||
viewportOptions,
|
||||
displaySetOptions,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
} = props;
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
const { displaySetService, toolGroupService, customizationService } = servicesManager.services;
|
||||
const toolGroupId = `${PMAP_TOOLGROUP_BASE_NAME}-${viewportId}`;
|
||||
const { displaySetService, segmentationService, uiNotificationService, customizationService } =
|
||||
servicesManager.services;
|
||||
|
||||
// PMAP viewport will always have a single display set
|
||||
if (displaySets.length !== 1) {
|
||||
throw new Error('PMAP viewport must have a single display set');
|
||||
}
|
||||
|
||||
const LoadingIndicatorTotalPercent = customizationService.getCustomization(
|
||||
'ui.loadingIndicatorTotalPercent'
|
||||
);
|
||||
|
||||
const pmapDisplaySet = displaySets[0];
|
||||
const [viewportGrid, viewportGridService] = useViewportGrid();
|
||||
const referencedDisplaySetRef = useRef(null);
|
||||
@@ -32,6 +39,24 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
metadata: referencedDisplaySetMetadata,
|
||||
};
|
||||
|
||||
const [pmapIsLoading, setPmapIsLoading] = useState(!pmapDisplaySet.isLoaded);
|
||||
|
||||
// Add effect to listen for loading complete
|
||||
useEffect(() => {
|
||||
const { unsubscribe } = segmentationService.subscribe(
|
||||
segmentationService.EVENTS.SEGMENTATION_LOADING_COMPLETE,
|
||||
evt => {
|
||||
if (evt.pmapDisplaySet?.displaySetInstanceUID === pmapDisplaySet.displaySetInstanceUID) {
|
||||
setPmapIsLoading(false);
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
return () => {
|
||||
unsubscribe();
|
||||
};
|
||||
}, [pmapDisplaySet]);
|
||||
|
||||
const getCornerstoneViewport = useCallback(() => {
|
||||
const { displaySet: referencedDisplaySet } = referencedDisplaySetRef.current;
|
||||
const { component: Component } = extensionManager.getModuleEntry(
|
||||
@@ -46,12 +71,25 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
|
||||
Object.assign(pmapDisplaySetOptions.options, {
|
||||
colormap: {
|
||||
name: 'rainbow',
|
||||
name: 'rainbow_2',
|
||||
opacity: [
|
||||
{ value: 0, opacity: 0.5 },
|
||||
{ value: 1, opacity: 1 },
|
||||
{ value: 0, opacity: 0 },
|
||||
{ value: 0.25, opacity: 0.25 },
|
||||
{ value: 0.5, opacity: 0.5 },
|
||||
{ value: 0.75, opacity: 0.75 },
|
||||
{ value: 0.9, opacity: 0.99 },
|
||||
],
|
||||
},
|
||||
voi: {
|
||||
windowCenter: 50,
|
||||
windowWidth: 100,
|
||||
},
|
||||
});
|
||||
|
||||
uiNotificationService.show({
|
||||
title: 'Parametric Map',
|
||||
type: 'warning',
|
||||
message: 'The values are multiplied by 100 in the viewport for better visibility',
|
||||
});
|
||||
|
||||
return (
|
||||
@@ -61,9 +99,9 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
displaySets={[referencedDisplaySet, pmapDisplaySet]}
|
||||
viewportOptions={{
|
||||
viewportType: 'volume',
|
||||
toolGroupId: toolGroupId,
|
||||
orientation: viewportOptions.orientation,
|
||||
viewportId: viewportOptions.viewportId,
|
||||
presentationIds: viewportOptions.presentationIds,
|
||||
}}
|
||||
displaySetOptions={[{}, pmapDisplaySetOptions]}
|
||||
></Component>
|
||||
@@ -73,7 +111,6 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
displaySetOptions,
|
||||
props,
|
||||
pmapDisplaySet,
|
||||
toolGroupId,
|
||||
viewportOptions.orientation,
|
||||
viewportOptions.viewportId,
|
||||
]);
|
||||
@@ -98,23 +135,33 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
};
|
||||
}, [activeViewportId, displaySetService, viewportGridService, viewports]);
|
||||
|
||||
useEffect(() => {
|
||||
let toolGroup = toolGroupService.getToolGroup(toolGroupId);
|
||||
let childrenWithProps = null;
|
||||
|
||||
if (toolGroup) {
|
||||
return;
|
||||
}
|
||||
|
||||
// This creates a custom tool group which has the lifetime of this view only
|
||||
toolGroup = createPMAPToolGroupAndAddTools(toolGroupService, customizationService, toolGroupId);
|
||||
|
||||
return () => toolGroupService.destroyToolGroup(toolGroupId);
|
||||
}, [customizationService, toolGroupId, toolGroupService]);
|
||||
if (children && children.length) {
|
||||
childrenWithProps = children.map((child, index) => {
|
||||
return (
|
||||
child &&
|
||||
React.cloneElement(child, {
|
||||
viewportId,
|
||||
key: index,
|
||||
})
|
||||
);
|
||||
});
|
||||
}
|
||||
|
||||
return (
|
||||
<>
|
||||
<div className="relative flex h-full w-full flex-row overflow-hidden">
|
||||
{pmapIsLoading && (
|
||||
<LoadingIndicatorTotalPercent
|
||||
className="h-full w-full"
|
||||
totalNumbers={null}
|
||||
percentComplete={null}
|
||||
loadingText="Loading Parametric Map..."
|
||||
/>
|
||||
)}
|
||||
{getCornerstoneViewport()}
|
||||
{childrenWithProps}
|
||||
</div>
|
||||
</>
|
||||
);
|
||||
|
||||
File diff suppressed because it is too large.
Load diff
@@ -37,7 +37,6 @@ module.exports = {
|
||||
'@babel/preset-react',
|
||||
'@babel/preset-typescript',
|
||||
],
|
||||
plugins: ['react-refresh/babel'],
|
||||
ignore: ['**/*.test.jsx', '**/*.test.js', '__snapshots__', '__tests__'],
|
||||
},
|
||||
},
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-rt",
|
||||
"version": "3.9.0-beta.102",
|
||||
"version": "3.10.2",
|
||||
"description": "DICOM RT read workflow",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -33,10 +33,10 @@
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.9.0-beta.102",
|
||||
"@ohif/extension-cornerstone": "3.9.0-beta.102",
|
||||
"@ohif/extension-default": "3.9.0-beta.102",
|
||||
"@ohif/i18n": "3.9.0-beta.102",
|
||||
"@ohif/core": "3.10.2",
|
||||
"@ohif/extension-cornerstone": "3.10.2",
|
||||
"@ohif/extension-default": "3.10.2",
|
||||
"@ohif/i18n": "3.10.2",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^18.3.1",
|
||||
"react-dom": "^18.3.1",
|
||||
|
||||
@@ -0,0 +1,55 @@
|
||||
import { SegmentationRepresentations } from '@cornerstonejs/tools/enums';
|
||||
|
||||
const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
const services = servicesManager.services;
|
||||
const { displaySetService, viewportGridService } = services;
|
||||
|
||||
const actions = {
|
||||
hydrateRTSDisplaySet: ({ displaySet, viewportId }) => {
|
||||
if (displaySet.Modality !== 'RTSTRUCT') {
|
||||
throw new Error('Display set is not an RTSTRUCT');
|
||||
}
|
||||
|
||||
const referencedDisplaySet = displaySetService.getDisplaySetByUID(
|
||||
displaySet.referencedDisplaySetInstanceUID
|
||||
);
|
||||
|
||||
// update the previously stored segmentationPresentation with the new viewportId
|
||||
// presentation so that when we put the referencedDisplaySet back in the viewport
|
||||
// it will have the correct segmentation representation hydrated
|
||||
commandsManager.runCommand('updateStoredSegmentationPresentation', {
|
||||
displaySet: displaySet,
|
||||
type: SegmentationRepresentations.Contour,
|
||||
});
|
||||
|
||||
// update the previously stored positionPresentation with the new viewportId
|
||||
// presentation so that when we put the referencedDisplaySet back in the viewport
|
||||
// it will be in the correct position zoom and pan
|
||||
commandsManager.runCommand('updateStoredPositionPresentation', {
|
||||
viewportId,
|
||||
displaySetInstanceUID: referencedDisplaySet.displaySetInstanceUID,
|
||||
});
|
||||
|
||||
viewportGridService.setDisplaySetsForViewport({
|
||||
viewportId,
|
||||
displaySetInstanceUIDs: [referencedDisplaySet.displaySetInstanceUID],
|
||||
});
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
hydrateRTSDisplaySet: {
|
||||
commandFn: actions.hydrateRTSDisplaySet,
|
||||
storeContexts: [],
|
||||
options: {},
|
||||
},
|
||||
};
|
||||
|
||||
return {
|
||||
actions,
|
||||
definitions,
|
||||
defaultContext: 'cornerstone-dicom-rt',
|
||||
};
|
||||
};
|
||||
|
||||
export default commandsModule;
|
||||
@@ -72,22 +72,27 @@ function _getDisplaySetsFromSeries(
|
||||
displaySet.referencedImages = instance.ReferencedSeriesSequence.ReferencedInstanceSequence;
|
||||
displaySet.referencedSeriesInstanceUID = referencedSeries.SeriesInstanceUID;
|
||||
|
||||
displaySet.getReferenceDisplaySet = () => {
|
||||
const { displaySetService } = servicesManager.services;
|
||||
const referencedDisplaySets = displaySetService.getDisplaySetsForSeries(
|
||||
displaySet.referencedSeriesInstanceUID
|
||||
const { displaySetService } = servicesManager.services;
|
||||
const referencedDisplaySets = displaySetService.getDisplaySetsForSeries(
|
||||
displaySet.referencedSeriesInstanceUID
|
||||
);
|
||||
|
||||
if (!referencedDisplaySets || referencedDisplaySets.length === 0) {
|
||||
// Instead of throwing error, subscribe to display sets added
|
||||
const { unsubscribe } = displaySetService.subscribe(
|
||||
displaySetService.EVENTS.DISPLAY_SETS_ADDED,
|
||||
({ displaySetsAdded }) => {
|
||||
const addedDisplaySet = displaySetsAdded[0];
|
||||
if (addedDisplaySet.SeriesInstanceUID === displaySet.referencedSeriesInstanceUID) {
|
||||
displaySet.referencedDisplaySetInstanceUID = addedDisplaySet.displaySetInstanceUID;
|
||||
unsubscribe();
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
if (!referencedDisplaySets || referencedDisplaySets.length === 0) {
|
||||
throw new Error('Referenced DisplaySet is missing for the RT');
|
||||
}
|
||||
|
||||
} else {
|
||||
const referencedDisplaySet = referencedDisplaySets[0];
|
||||
|
||||
displaySet.referencedDisplaySetInstanceUID = referencedDisplaySet.displaySetInstanceUID;
|
||||
|
||||
return referencedDisplaySet;
|
||||
};
|
||||
}
|
||||
|
||||
displaySet.load = ({ headers }) => _load(displaySet, servicesManager, extensionManager, headers);
|
||||
|
||||
@@ -111,19 +116,13 @@ function _load(rtDisplaySet, servicesManager: AppTypes.ServicesManager, extensio
|
||||
// and also return the same promise to any other callers.
|
||||
loadPromises[SOPInstanceUID] = new Promise(async (resolve, reject) => {
|
||||
if (!rtDisplaySet.structureSet) {
|
||||
const structureSet = await loadRTStruct(
|
||||
extensionManager,
|
||||
rtDisplaySet,
|
||||
rtDisplaySet.getReferenceDisplaySet(),
|
||||
headers
|
||||
);
|
||||
const structureSet = await loadRTStruct(extensionManager, rtDisplaySet, headers);
|
||||
|
||||
rtDisplaySet.structureSet = structureSet;
|
||||
}
|
||||
|
||||
const suppressEvents = true;
|
||||
segmentationService
|
||||
.createSegmentationForRTDisplaySet(rtDisplaySet, null, suppressEvents)
|
||||
.createSegmentationForRTDisplaySet(rtDisplaySet)
|
||||
.then(() => {
|
||||
rtDisplaySet.loading = false;
|
||||
resolve();
|
||||
|
||||
@@ -2,6 +2,7 @@ import { id } from './id';
|
||||
import React from 'react';
|
||||
import { Types } from '@ohif/core';
|
||||
import getSopClassHandlerModule from './getSopClassHandlerModule';
|
||||
import getCommandsModule from './getCommandsModule';
|
||||
|
||||
const Component = React.lazy(() => {
|
||||
return import(/* webpackPrefetch: true */ './viewports/OHIFCornerstoneRTViewport');
|
||||
@@ -24,6 +25,7 @@ const extension: Types.Extensions.Extension = {
|
||||
* You ID can be anything you want, but it should be unique.
|
||||
*/
|
||||
id,
|
||||
getCommandsModule,
|
||||
|
||||
/**
|
||||
* PanelModule should provide a list of panels that will be available in OHIF
|
||||
|
||||
@@ -89,12 +89,7 @@ async function checkAndLoadContourData(instance, datasource) {
|
||||
});
|
||||
}
|
||||
|
||||
export default async function loadRTStruct(
|
||||
extensionManager,
|
||||
rtStructDisplaySet,
|
||||
referencedDisplaySet,
|
||||
headers
|
||||
) {
|
||||
export default async function loadRTStruct(extensionManager, rtStructDisplaySet, headers) {
|
||||
const utilityModule = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.utilityModule.common'
|
||||
);
|
||||
@@ -102,8 +97,6 @@ export default async function loadRTStruct(
|
||||
const { bulkDataURI } = dataSource.getConfig?.() || {};
|
||||
|
||||
const { dicomLoaderService } = utilityModule.exports;
|
||||
const imageIdSopInstanceUidPairs =
|
||||
_getImageIdSopInstanceUidPairsForDisplaySet(referencedDisplaySet);
|
||||
|
||||
// Set here is loading is asynchronous.
|
||||
// If this function throws its set back to false.
|
||||
@@ -133,6 +126,7 @@ export default async function loadRTStruct(
|
||||
SeriesInstanceUID: instance.SeriesInstanceUID,
|
||||
ROIContours: [],
|
||||
visible: true,
|
||||
ReferencedSOPInstanceUIDsSet: new Set(),
|
||||
};
|
||||
|
||||
for (let i = 0; i < ROIContourSequence.length; i++) {
|
||||
@@ -149,7 +143,7 @@ export default async function loadRTStruct(
|
||||
|
||||
const contourPoints = [];
|
||||
for (let c = 0; c < ContourSequenceArray.length; c++) {
|
||||
const { ContourImageSequence, ContourData, NumberOfContourPoints, ContourGeometricType } =
|
||||
const { ContourData, NumberOfContourPoints, ContourGeometricType, ContourImageSequence } =
|
||||
ContourSequenceArray[c];
|
||||
|
||||
let isSupported = false;
|
||||
@@ -180,6 +174,12 @@ export default async function loadRTStruct(
|
||||
type: ContourGeometricType,
|
||||
isSupported,
|
||||
});
|
||||
|
||||
if (ContourImageSequence?.ReferencedSOPInstanceUID) {
|
||||
structureSet.ReferencedSOPInstanceUIDsSet.add(
|
||||
ContourImageSequence?.ReferencedSOPInstanceUID
|
||||
);
|
||||
}
|
||||
}
|
||||
|
||||
_setROIContourMetadata(
|
||||
@@ -194,24 +194,6 @@ export default async function loadRTStruct(
|
||||
return structureSet;
|
||||
}
|
||||
|
||||
const _getImageId = (imageIdSopInstanceUidPairs, sopInstanceUID) => {
|
||||
const imageIdSopInstanceUidPairsEntry = imageIdSopInstanceUidPairs.find(
|
||||
imageIdSopInstanceUidPairsEntry =>
|
||||
imageIdSopInstanceUidPairsEntry.sopInstanceUID === sopInstanceUID
|
||||
);
|
||||
|
||||
return imageIdSopInstanceUidPairsEntry ? imageIdSopInstanceUidPairsEntry.imageId : null;
|
||||
};
|
||||
|
||||
function _getImageIdSopInstanceUidPairsForDisplaySet(referencedDisplaySet) {
|
||||
return referencedDisplaySet.images.map(image => {
|
||||
return {
|
||||
imageId: image.imageId,
|
||||
sopInstanceUID: image.SOPInstanceUID,
|
||||
};
|
||||
});
|
||||
}
|
||||
|
||||
function _setROIContourMetadata(
|
||||
structureSet,
|
||||
StructureSetROISequence,
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
function createRTToolGroupAndAddTools(ToolGroupService, customizationService, toolGroupId) {
|
||||
const { tools } = customizationService.get('cornerstone.overlayViewportTools') ?? {};
|
||||
const tools = customizationService.getCustomization('cornerstone.overlayViewportTools');
|
||||
|
||||
return ToolGroupService.createToolGroupAndAddTools(toolGroupId, tools);
|
||||
}
|
||||
|
||||
@@ -1,5 +1,3 @@
|
||||
import { ButtonEnums } from '@ohif/ui';
|
||||
|
||||
const RESPONSE = {
|
||||
NO_NEVER: -1,
|
||||
CANCEL: 0,
|
||||
@@ -10,50 +8,50 @@ function promptHydrateRT({
|
||||
servicesManager,
|
||||
rtDisplaySet,
|
||||
viewportId,
|
||||
toolGroupId = 'default',
|
||||
preHydrateCallbacks,
|
||||
hydrateRTDisplaySet,
|
||||
}: withAppTypes) {
|
||||
const { uiViewportDialogService } = servicesManager.services;
|
||||
const { uiViewportDialogService, customizationService } = servicesManager.services;
|
||||
const extensionManager = servicesManager._extensionManager;
|
||||
const appConfig = extensionManager._appConfig;
|
||||
return new Promise(async function (resolve, reject) {
|
||||
const promptResult = appConfig?.disableConfirmationPrompts
|
||||
? RESPONSE.HYDRATE_SEG
|
||||
: await _askHydrate(uiViewportDialogService, viewportId);
|
||||
: await _askHydrate(uiViewportDialogService, customizationService, viewportId);
|
||||
|
||||
if (promptResult === RESPONSE.HYDRATE_SEG) {
|
||||
preHydrateCallbacks?.forEach(callback => {
|
||||
callback();
|
||||
});
|
||||
|
||||
window.setTimeout(async () => {
|
||||
const isHydrated = await hydrateRTDisplaySet({
|
||||
rtDisplaySet,
|
||||
viewportId,
|
||||
toolGroupId,
|
||||
servicesManager,
|
||||
});
|
||||
const isHydrated = await hydrateRTDisplaySet({
|
||||
rtDisplaySet,
|
||||
viewportId,
|
||||
servicesManager,
|
||||
});
|
||||
|
||||
resolve(isHydrated);
|
||||
}, 0);
|
||||
resolve(isHydrated);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
function _askHydrate(uiViewportDialogService: AppTypes.UIViewportDialogService, viewportId) {
|
||||
function _askHydrate(
|
||||
uiViewportDialogService: AppTypes.UIViewportDialogService,
|
||||
customizationService: AppTypes.CustomizationService,
|
||||
viewportId
|
||||
) {
|
||||
return new Promise(function (resolve, reject) {
|
||||
const message = 'Do you want to open this Segmentation?';
|
||||
const message = customizationService.getCustomization('viewportNotification.hydrateRTMessage');
|
||||
const actions = [
|
||||
{
|
||||
id: 'no-hydrate',
|
||||
type: ButtonEnums.type.secondary,
|
||||
type: 'secondary',
|
||||
text: 'No',
|
||||
value: RESPONSE.CANCEL,
|
||||
},
|
||||
{
|
||||
id: 'yes-hydrate',
|
||||
type: ButtonEnums.type.primary,
|
||||
type: 'primary',
|
||||
text: 'Yes',
|
||||
value: RESPONSE.HYDRATE_SEG,
|
||||
},
|
||||
|
||||
@@ -1,10 +1,14 @@
|
||||
import React, { useCallback, useEffect, useRef, useState } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { useViewportGrid, LoadingIndicatorTotalPercent, ViewportActionArrows } from '@ohif/ui';
|
||||
import { ViewportActionArrows } from '@ohif/ui-next';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import { utils } from '@ohif/extension-cornerstone';
|
||||
|
||||
import promptHydrateRT from '../utils/promptHydrateRT';
|
||||
import _getStatusComponent from './_getStatusComponent';
|
||||
|
||||
import createRTToolGroupAndAddTools from '../utils/initRTToolGroup';
|
||||
import { usePositionPresentationStore } from '@ohif/extension-cornerstone';
|
||||
|
||||
const RT_TOOLGROUP_BASE_NAME = 'RTToolGroup';
|
||||
|
||||
@@ -36,13 +40,17 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
throw new Error('RT viewport should only have a single display set');
|
||||
}
|
||||
|
||||
const LoadingIndicatorTotalPercent = customizationService.getCustomization(
|
||||
'ui.loadingIndicatorTotalPercent'
|
||||
);
|
||||
|
||||
const rtDisplaySet = displaySets[0];
|
||||
|
||||
const [viewportGrid, viewportGridService] = useViewportGrid();
|
||||
|
||||
// States
|
||||
const [isToolGroupCreated, setToolGroupCreated] = useState(false);
|
||||
const [selectedSegment, setSelectedSegment] = useState(1);
|
||||
const selectedSegmentObjectIndex: number = 0;
|
||||
const { setPositionPresentation } = usePositionPresentationStore();
|
||||
|
||||
// Hydration means that the RT is opened and segments are loaded into the
|
||||
// segmentation panel, and RT is also rendered on any viewport that is in the
|
||||
@@ -62,7 +70,10 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
|
||||
const { viewports, activeViewportId } = viewportGrid;
|
||||
|
||||
const referencedDisplaySet = rtDisplaySet.getReferenceDisplaySet();
|
||||
const referencedDisplaySetInstanceUID = rtDisplaySet.referencedDisplaySetInstanceUID;
|
||||
const referencedDisplaySet = displaySetService.getDisplaySetByUID(
|
||||
referencedDisplaySetInstanceUID
|
||||
);
|
||||
const referencedDisplaySetMetadata = _getReferencedDisplaySetMetadata(referencedDisplaySet);
|
||||
|
||||
referencedDisplaySetRef.current = {
|
||||
@@ -91,12 +102,15 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
});
|
||||
}, [viewportGrid]);
|
||||
|
||||
const hydrateRTDisplaySet = ({ rtDisplaySet, viewportId }) => {
|
||||
commandsManager.runCommand('loadSegmentationDisplaySetsForViewport', {
|
||||
displaySets: [rtDisplaySet],
|
||||
viewportId,
|
||||
});
|
||||
};
|
||||
const hydrateRTDisplaySet = useCallback(
|
||||
({ rtDisplaySet, viewportId }) => {
|
||||
commandsManager.runCommand('hydrateRTSDisplaySet', {
|
||||
displaySet: rtDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
},
|
||||
[commandsManager]
|
||||
);
|
||||
|
||||
const getCornerstoneViewport = useCallback(() => {
|
||||
const { component: Component } = extensionManager.getModuleEntry(
|
||||
@@ -115,6 +129,7 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
toolGroupId: toolGroupId,
|
||||
orientation: viewportOptions.orientation,
|
||||
viewportId: viewportOptions.viewportId,
|
||||
presentationIds: viewportOptions.presentationIds,
|
||||
}}
|
||||
onElementEnabled={evt => {
|
||||
props.onElementEnabled?.(evt);
|
||||
@@ -127,26 +142,15 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
|
||||
const onSegmentChange = useCallback(
|
||||
direction => {
|
||||
const segmentationId = rtDisplaySet.displaySetInstanceUID;
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
const { segments } = segmentation;
|
||||
|
||||
const numberOfSegments = Object.keys(segments).length;
|
||||
|
||||
let newSelectedSegmentIndex = selectedSegment + direction;
|
||||
|
||||
// Segment 0 is always background
|
||||
if (newSelectedSegmentIndex >= numberOfSegments - 1) {
|
||||
newSelectedSegmentIndex = 1;
|
||||
} else if (newSelectedSegmentIndex === 0) {
|
||||
newSelectedSegmentIndex = numberOfSegments - 1;
|
||||
}
|
||||
|
||||
segmentationService.jumpToSegmentCenter(segmentationId, newSelectedSegmentIndex, toolGroupId);
|
||||
setSelectedSegment(newSelectedSegmentIndex);
|
||||
utils.handleSegmentChange({
|
||||
direction,
|
||||
segDisplaySet: rtDisplaySet,
|
||||
viewportId,
|
||||
selectedSegmentObjectIndex,
|
||||
segmentationService,
|
||||
});
|
||||
},
|
||||
[selectedSegment]
|
||||
[selectedSegmentObjectIndex]
|
||||
);
|
||||
|
||||
useEffect(() => {
|
||||
@@ -177,6 +181,19 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
setRtIsLoading(false);
|
||||
}
|
||||
|
||||
if (rtDisplaySet?.firstSegmentedSliceImageId && viewportOptions?.presentationIds) {
|
||||
const { firstSegmentedSliceImageId } = rtDisplaySet;
|
||||
const { presentationIds } = viewportOptions;
|
||||
|
||||
setPositionPresentation(presentationIds.positionPresentationId, {
|
||||
viewportType: 'stack',
|
||||
viewReference: {
|
||||
referencedImageId: firstSegmentedSliceImageId,
|
||||
},
|
||||
viewPresentation: {},
|
||||
});
|
||||
}
|
||||
|
||||
if (evt.overlappingSegments) {
|
||||
uiNotificationService.show({
|
||||
title: 'Overlapping Segments',
|
||||
@@ -239,11 +256,9 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
|
||||
toolGroup = createRTToolGroupAndAddTools(toolGroupService, customizationService, toolGroupId);
|
||||
|
||||
setToolGroupCreated(true);
|
||||
|
||||
return () => {
|
||||
// remove the segmentation representations if seg displayset changed
|
||||
segmentationService.removeSegmentationRepresentationFromToolGroup(toolGroupId);
|
||||
segmentationService.removeSegmentationRepresentations(viewportId);
|
||||
|
||||
toolGroupService.destroyToolGroup(toolGroupId);
|
||||
};
|
||||
@@ -254,11 +269,27 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
|
||||
return () => {
|
||||
// remove the segmentation representations if seg displayset changed
|
||||
segmentationService.removeSegmentationRepresentationFromToolGroup(toolGroupId);
|
||||
segmentationService.removeSegmentationRepresentations(viewportId);
|
||||
referencedDisplaySetRef.current = null;
|
||||
};
|
||||
}, [rtDisplaySet]);
|
||||
|
||||
const onStatusClick = useCallback(async () => {
|
||||
// Before hydrating a RT and make it added to all viewports in the grid
|
||||
// that share the same frameOfReferenceUID, we need to store the viewport grid
|
||||
// presentation state, so that we can restore it after hydrating the RT. This is
|
||||
// required if the user has changed the viewport (other viewport than RT viewport)
|
||||
// presentation state (w/l and invert) and then opens the RT. If we don't store
|
||||
// the presentation state, the viewport will be reset to the default presentation
|
||||
storePresentationState();
|
||||
const isHydrated = await hydrateRTDisplaySet({
|
||||
rtDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
|
||||
setIsHydrated(isHydrated);
|
||||
}, [hydrateRTDisplaySet, rtDisplaySet, storePresentationState, viewportId]);
|
||||
|
||||
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
let childrenWithProps = null;
|
||||
|
||||
@@ -282,24 +313,8 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
});
|
||||
}
|
||||
|
||||
const onStatusClick = useCallback(async () => {
|
||||
// Before hydrating a RT and make it added to all viewports in the grid
|
||||
// that share the same frameOfReferenceUID, we need to store the viewport grid
|
||||
// presentation state, so that we can restore it after hydrating the RT. This is
|
||||
// required if the user has changed the viewport (other viewport than RT viewport)
|
||||
// presentation state (w/l and invert) and then opens the RT. If we don't store
|
||||
// the presentation state, the viewport will be reset to the default presentation
|
||||
storePresentationState();
|
||||
const isHydrated = await hydrateRTDisplaySet({
|
||||
rtDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
|
||||
setIsHydrated(isHydrated);
|
||||
}, [hydrateRTDisplaySet, rtDisplaySet, storePresentationState, viewportId]);
|
||||
|
||||
useEffect(() => {
|
||||
viewportActionCornersService.setComponents([
|
||||
viewportActionCornersService.addComponents([
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportStatusComponent',
|
||||
@@ -318,7 +333,7 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
key="actionArrows"
|
||||
onArrowsClick={onSegmentChange}
|
||||
className={
|
||||
viewportId === activeViewportId ? 'visible' : 'invisible group-hover:visible'
|
||||
viewportId === activeViewportId ? 'visible' : 'invisible group-hover/pane:visible'
|
||||
}
|
||||
></ViewportActionArrows>
|
||||
),
|
||||
|
||||
@@ -1,6 +1,7 @@
|
||||
import React from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { Icon, Tooltip } from '@ohif/ui';
|
||||
import { ViewportActionButton } from '@ohif/ui-next';
|
||||
import { Icons, Tooltip, TooltipTrigger, TooltipContent } from '@ohif/ui-next';
|
||||
|
||||
export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
let ToolTipMessage = null;
|
||||
@@ -8,18 +9,16 @@ export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
|
||||
switch (isHydrated) {
|
||||
case true:
|
||||
StatusIcon = () => <Icon name="status-alert" />;
|
||||
|
||||
StatusIcon = () => <Icons.ByName name="status-alert" />;
|
||||
ToolTipMessage = () => <div>This Segmentation is loaded in the segmentation panel</div>;
|
||||
break;
|
||||
case false:
|
||||
StatusIcon = () => (
|
||||
<Icon
|
||||
className="text-aqua-pale"
|
||||
<Icons.ByName
|
||||
className="text-muted-foreground h-4 w-4"
|
||||
name="status-untracked"
|
||||
/>
|
||||
);
|
||||
|
||||
ToolTipMessage = () => <div>Click LOAD to load RTSTRUCT.</div>;
|
||||
}
|
||||
|
||||
@@ -34,13 +33,7 @@ export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
<span className="ml-1">RTSTRUCT</span>
|
||||
</div>
|
||||
{!isHydrated && (
|
||||
<div
|
||||
className="bg-primary-main hover:bg-primary-light ml-1 cursor-pointer rounded px-1.5 hover:text-black"
|
||||
// Using onMouseUp here because onClick is not working when the viewport is not active and is styled with pointer-events:none
|
||||
onMouseUp={onStatusClick}
|
||||
>
|
||||
{loadStr}
|
||||
</div>
|
||||
<ViewportActionButton onInteraction={onStatusClick}>{loadStr}</ViewportActionButton>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
@@ -49,11 +42,15 @@ export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
return (
|
||||
<>
|
||||
{ToolTipMessage && (
|
||||
<Tooltip
|
||||
content={<ToolTipMessage />}
|
||||
position="bottom-left"
|
||||
>
|
||||
<StatusArea />
|
||||
<Tooltip>
|
||||
<TooltipTrigger asChild>
|
||||
<span>
|
||||
<StatusArea />
|
||||
</span>
|
||||
</TooltipTrigger>
|
||||
<TooltipContent side="bottom">
|
||||
<ToolTipMessage />
|
||||
</TooltipContent>
|
||||
</Tooltip>
|
||||
)}
|
||||
{!ToolTipMessage && <StatusArea />}
|
||||
|
||||
File diff suppressed because it is too large.
Load diff
@@ -37,7 +37,6 @@ module.exports = {
|
||||
'@babel/preset-react',
|
||||
'@babel/preset-typescript',
|
||||
],
|
||||
plugins: ['react-refresh/babel'],
|
||||
ignore: ['**/*.test.jsx', '**/*.test.js', '__snapshots__', '__tests__'],
|
||||
},
|
||||
},
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-seg",
|
||||
"version": "3.9.0-beta.102",
|
||||
"version": "3.10.2",
|
||||
"description": "DICOM SEG read workflow",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -33,10 +33,10 @@
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.9.0-beta.102",
|
||||
"@ohif/extension-cornerstone": "3.9.0-beta.102",
|
||||
"@ohif/extension-default": "3.9.0-beta.102",
|
||||
"@ohif/i18n": "3.9.0-beta.102",
|
||||
"@ohif/core": "3.10.2",
|
||||
"@ohif/extension-cornerstone": "3.10.2",
|
||||
"@ohif/extension-default": "3.10.2",
|
||||
"@ohif/i18n": "3.10.2",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^18.3.1",
|
||||
"react-dom": "^18.3.1",
|
||||
@@ -46,9 +46,9 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^1.86.0",
|
||||
"@cornerstonejs/core": "^1.86.0",
|
||||
"@kitware/vtk.js": "30.4.1",
|
||||
"@cornerstonejs/adapters": "^3.11.6",
|
||||
"@cornerstonejs/core": "^3.11.6",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"react-color": "^2.19.3"
|
||||
}
|
||||
}
|
||||
@@ -1,31 +1,27 @@
|
||||
import dcmjs from 'dcmjs';
|
||||
import { createReportDialogPrompt } from '@ohif/extension-default';
|
||||
import { Types } from '@ohif/core';
|
||||
import { classes, Types } from '@ohif/core';
|
||||
import { cache, metaData } from '@cornerstonejs/core';
|
||||
import {
|
||||
segmentation as cornerstoneToolsSegmentation,
|
||||
Enums as cornerstoneToolsEnums,
|
||||
utilities,
|
||||
} from '@cornerstonejs/tools';
|
||||
import { segmentation as cornerstoneToolsSegmentation } from '@cornerstonejs/tools';
|
||||
import { adaptersRT, helpers, adaptersSEG } from '@cornerstonejs/adapters';
|
||||
import { classes, DicomMetadataStore } from '@ohif/core';
|
||||
import { createReportDialogPrompt } from '@ohif/extension-default';
|
||||
import { DicomMetadataStore } from '@ohif/core';
|
||||
|
||||
import vtkImageMarchingSquares from '@kitware/vtk.js/Filters/General/ImageMarchingSquares';
|
||||
import vtkDataArray from '@kitware/vtk.js/Common/Core/DataArray';
|
||||
import vtkImageData from '@kitware/vtk.js/Common/DataModel/ImageData';
|
||||
|
||||
import {
|
||||
updateViewportsForSegmentationRendering,
|
||||
getUpdatedViewportsForSegmentation,
|
||||
getTargetViewport,
|
||||
} from './utils/hydrationUtils';
|
||||
const { segmentation: segmentationUtils } = utilities;
|
||||
import PROMPT_RESPONSES from '../../default/src/utils/_shared/PROMPT_RESPONSES';
|
||||
|
||||
const { datasetToBlob } = dcmjs.data;
|
||||
|
||||
const getTargetViewport = ({ viewportId, viewportGridService }) => {
|
||||
const { viewports, activeViewportId } = viewportGridService.getState();
|
||||
const targetViewportId = viewportId || activeViewportId;
|
||||
|
||||
const viewport = viewports.get(targetViewportId);
|
||||
|
||||
return viewport;
|
||||
};
|
||||
|
||||
const {
|
||||
Cornerstone3D: {
|
||||
Segmentation: { generateLabelMaps2DFrom3D, generateSegmentation },
|
||||
Segmentation: { generateSegmentation },
|
||||
},
|
||||
} = adaptersSEG;
|
||||
|
||||
@@ -41,88 +37,10 @@ const commandsModule = ({
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
}: Types.Extensions.ExtensionParams): Types.Extensions.CommandsModule => {
|
||||
const {
|
||||
uiNotificationService,
|
||||
segmentationService,
|
||||
uiDialogService,
|
||||
displaySetService,
|
||||
viewportGridService,
|
||||
toolGroupService,
|
||||
cornerstoneViewportService,
|
||||
} = servicesManager.services;
|
||||
const { segmentationService, displaySetService, viewportGridService, toolGroupService } =
|
||||
servicesManager.services as AppTypes.Services;
|
||||
|
||||
const actions = {
|
||||
/**
|
||||
* Retrieves a list of viewports that require updates in preparation for segmentation rendering.
|
||||
* This function evaluates viewports based on their compatibility with the provided segmentation's
|
||||
* frame of reference UID and appends them to the updated list if they should render the segmentation.
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.viewportId - the ID of the viewport to be updated.
|
||||
* @param params.servicesManager - The services manager
|
||||
* @param params.referencedDisplaySetInstanceUID - Optional UID for the referenced display set instance.
|
||||
*
|
||||
* @returns {Array} Returns an array of viewports that require updates for segmentation rendering.
|
||||
*/
|
||||
getUpdatedViewportsForSegmentation,
|
||||
/**
|
||||
* Creates an empty segmentation for a specified viewport.
|
||||
* It first checks if the display set associated with the viewport is reconstructable.
|
||||
* If not, it raises a notification error. Otherwise, it creates a new segmentation
|
||||
* for the display set after handling the necessary steps for making the viewport
|
||||
* a volume viewport first
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.viewportId - the target viewport ID.
|
||||
*
|
||||
*/
|
||||
createEmptySegmentationForViewport: async ({ viewportId }) => {
|
||||
const viewport = getTargetViewport({ viewportId, viewportGridService });
|
||||
// Todo: add support for multiple display sets
|
||||
const displaySetInstanceUID = viewport.displaySetInstanceUIDs[0];
|
||||
|
||||
const displaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
|
||||
|
||||
if (!displaySet.isReconstructable) {
|
||||
uiNotificationService.show({
|
||||
title: 'Segmentation',
|
||||
message: 'Segmentation is not supported for non-reconstructible displaysets yet',
|
||||
type: 'error',
|
||||
});
|
||||
return;
|
||||
}
|
||||
|
||||
updateViewportsForSegmentationRendering({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
displaySet,
|
||||
loadFn: async () => {
|
||||
const currentSegmentations = segmentationService.getSegmentations();
|
||||
const segmentationId = await segmentationService.createSegmentationForDisplaySet(
|
||||
displaySetInstanceUID,
|
||||
{ label: `Segmentation ${currentSegmentations.length + 1}` }
|
||||
);
|
||||
|
||||
const toolGroupId = viewport.viewportOptions.toolGroupId;
|
||||
|
||||
await segmentationService.addSegmentationRepresentationToToolGroup(
|
||||
toolGroupId,
|
||||
segmentationId
|
||||
);
|
||||
|
||||
// Add only one segment for now
|
||||
segmentationService.addSegment(segmentationId, {
|
||||
toolGroupId,
|
||||
segmentIndex: 1,
|
||||
properties: {
|
||||
label: 'Segment 1',
|
||||
},
|
||||
});
|
||||
|
||||
return segmentationId;
|
||||
},
|
||||
});
|
||||
},
|
||||
/**
|
||||
* Loads segmentations for a specified viewport.
|
||||
* The function prepares the viewport for rendering, then loads the segmentation details.
|
||||
@@ -134,106 +52,30 @@ const commandsModule = ({
|
||||
*
|
||||
*/
|
||||
loadSegmentationsForViewport: async ({ segmentations, viewportId }) => {
|
||||
updateViewportsForSegmentationRendering({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
loadFn: async () => {
|
||||
// Todo: handle adding more than one segmentation
|
||||
const viewport = getTargetViewport({ viewportId, viewportGridService });
|
||||
const displaySetInstanceUID = viewport.displaySetInstanceUIDs[0];
|
||||
|
||||
const segmentation = segmentations[0];
|
||||
const segmentationId = segmentation.id;
|
||||
const label = segmentation.label;
|
||||
const segments = segmentation.segments;
|
||||
|
||||
delete segmentation.segments;
|
||||
|
||||
await segmentationService.createSegmentationForDisplaySet(displaySetInstanceUID, {
|
||||
segmentationId,
|
||||
label,
|
||||
});
|
||||
|
||||
if (segmentation.scalarData) {
|
||||
const labelmapVolume = segmentationService.getLabelmapVolume(segmentationId);
|
||||
labelmapVolume.scalarData.set(segmentation.scalarData);
|
||||
}
|
||||
|
||||
segmentationService.addOrUpdateSegmentation(segmentation);
|
||||
|
||||
const toolGroupId = viewport.viewportOptions.toolGroupId;
|
||||
await segmentationService.addSegmentationRepresentationToToolGroup(
|
||||
toolGroupId,
|
||||
segmentationId
|
||||
);
|
||||
|
||||
segments.forEach(segment => {
|
||||
if (segment === null) {
|
||||
return;
|
||||
}
|
||||
segmentationService.addSegment(segmentationId, {
|
||||
segmentIndex: segment.segmentIndex,
|
||||
toolGroupId,
|
||||
properties: {
|
||||
color: segment.color,
|
||||
label: segment.label,
|
||||
opacity: segment.opacity,
|
||||
isLocked: segment.isLocked,
|
||||
visibility: segment.isVisible,
|
||||
active: segmentation.activeSegmentIndex === segment.segmentIndex,
|
||||
},
|
||||
});
|
||||
});
|
||||
|
||||
if (segmentation.centroidsIJK) {
|
||||
segmentationService.setCentroids(segmentation.id, segmentation.centroidsIJK);
|
||||
}
|
||||
|
||||
return segmentationId;
|
||||
},
|
||||
});
|
||||
},
|
||||
/**
|
||||
* Loads segmentation display sets for a specified viewport.
|
||||
* Depending on the modality of the display set (SEG or RTSTRUCT),
|
||||
* it chooses the appropriate service function to create
|
||||
* the segmentation for the display set.
|
||||
* The function then prepares the viewport for rendering segmentation.
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.viewportId - ID of the viewport where the segmentation display sets should be loaded.
|
||||
* @param params.displaySets - Array of display sets to be loaded for segmentation.
|
||||
*
|
||||
*/
|
||||
loadSegmentationDisplaySetsForViewport: async ({ viewportId, displaySets }) => {
|
||||
// Todo: handle adding more than one segmentation
|
||||
const displaySet = displaySets[0];
|
||||
const referencedDisplaySet = displaySetService.getDisplaySetByUID(
|
||||
displaySet.referencedDisplaySetInstanceUID
|
||||
);
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
const initialSliceIndex = viewport.getSliceIndex();
|
||||
const viewport = getTargetViewport({ viewportId, viewportGridService });
|
||||
const displaySetInstanceUID = viewport.displaySetInstanceUIDs[0];
|
||||
|
||||
updateViewportsForSegmentationRendering({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
displaySet,
|
||||
loadFn: async () => {
|
||||
const segDisplaySet = displaySet;
|
||||
const suppressEvents = false;
|
||||
const serviceFunction =
|
||||
segDisplaySet.Modality === 'SEG'
|
||||
? 'createSegmentationForSEGDisplaySet'
|
||||
: 'createSegmentationForRTDisplaySet';
|
||||
const segmentation = segmentations[0];
|
||||
const segmentationId = segmentation.segmentationId;
|
||||
const label = segmentation.config.label;
|
||||
const segments = segmentation.config.segments;
|
||||
|
||||
const boundFn = segmentationService[serviceFunction].bind(segmentationService);
|
||||
const segmentationId = await boundFn(segDisplaySet, null, suppressEvents);
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
segmentation.description = `S${referencedDisplaySet.SeriesNumber}: ${referencedDisplaySet.SeriesDescription}`;
|
||||
return segmentationId;
|
||||
},
|
||||
initialSliceIndex,
|
||||
const displaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
|
||||
|
||||
await segmentationService.createLabelmapForDisplaySet(displaySet, {
|
||||
segmentationId,
|
||||
segments,
|
||||
label,
|
||||
});
|
||||
|
||||
segmentationService.addOrUpdateSegmentation(segmentation);
|
||||
|
||||
await segmentationService.addSegmentationRepresentation(viewport.viewportId, {
|
||||
segmentationId,
|
||||
});
|
||||
|
||||
return segmentationId;
|
||||
},
|
||||
/**
|
||||
* Generates a segmentation from a given segmentation ID.
|
||||
@@ -251,25 +93,61 @@ const commandsModule = ({
|
||||
generateSegmentation: ({ segmentationId, options = {} }) => {
|
||||
const segmentation = cornerstoneToolsSegmentation.state.getSegmentation(segmentationId);
|
||||
|
||||
const { referencedVolumeId } = segmentation.representationData.LABELMAP;
|
||||
const { imageIds } = segmentation.representationData.Labelmap;
|
||||
|
||||
const segmentationVolume = cache.getVolume(segmentationId);
|
||||
const referencedVolume = cache.getVolume(referencedVolumeId);
|
||||
const referencedImages = referencedVolume.getCornerstoneImages();
|
||||
const segImages = imageIds.map(imageId => cache.getImage(imageId));
|
||||
const referencedImages = segImages.map(image => cache.getImage(image.referencedImageId));
|
||||
|
||||
const labelmapObj = generateLabelMaps2DFrom3D(segmentationVolume);
|
||||
const labelmaps2D = [];
|
||||
|
||||
// Generate fake metadata as an example
|
||||
labelmapObj.metadata = [];
|
||||
let z = 0;
|
||||
|
||||
for (const segImage of segImages) {
|
||||
const segmentsOnLabelmap = new Set();
|
||||
const pixelData = segImage.getPixelData();
|
||||
const { rows, columns } = segImage;
|
||||
|
||||
// Use a single pass through the pixel data
|
||||
for (let i = 0; i < pixelData.length; i++) {
|
||||
const segment = pixelData[i];
|
||||
if (segment !== 0) {
|
||||
segmentsOnLabelmap.add(segment);
|
||||
}
|
||||
}
|
||||
|
||||
labelmaps2D[z++] = {
|
||||
segmentsOnLabelmap: Array.from(segmentsOnLabelmap),
|
||||
pixelData,
|
||||
rows,
|
||||
columns,
|
||||
};
|
||||
}
|
||||
|
||||
const allSegmentsOnLabelmap = labelmaps2D.map(labelmap => labelmap.segmentsOnLabelmap);
|
||||
|
||||
const labelmap3D = {
|
||||
segmentsOnLabelmap: Array.from(new Set(allSegmentsOnLabelmap.flat())),
|
||||
metadata: [],
|
||||
labelmaps2D,
|
||||
};
|
||||
|
||||
const segmentationInOHIF = segmentationService.getSegmentation(segmentationId);
|
||||
segmentationInOHIF.segments.forEach(segment => {
|
||||
const representations = segmentationService.getRepresentationsForSegmentation(segmentationId);
|
||||
|
||||
Object.entries(segmentationInOHIF.segments).forEach(([segmentIndex, segment]) => {
|
||||
// segmentation service already has a color for each segment
|
||||
if (!segment) {
|
||||
return;
|
||||
}
|
||||
const segmentIndex = segment.segmentIndex;
|
||||
const { label, color } = segment;
|
||||
|
||||
const { label } = segment;
|
||||
|
||||
const firstRepresentation = representations[0];
|
||||
const color = segmentationService.getSegmentColor(
|
||||
firstRepresentation.viewportId,
|
||||
segmentationId,
|
||||
segment.segmentIndex
|
||||
);
|
||||
|
||||
const RecommendedDisplayCIELabValue = dcmjs.data.Colors.rgb2DICOMLAB(
|
||||
color.slice(0, 3).map(value => value / 255)
|
||||
@@ -292,12 +170,12 @@ const commandsModule = ({
|
||||
CodeMeaning: 'Tissue',
|
||||
},
|
||||
};
|
||||
labelmapObj.metadata[segmentIndex] = segmentMetadata;
|
||||
labelmap3D.metadata[segmentIndex] = segmentMetadata;
|
||||
});
|
||||
|
||||
const generatedSegmentation = generateSegmentation(
|
||||
referencedImages,
|
||||
labelmapObj,
|
||||
labelmap3D,
|
||||
metaData,
|
||||
options
|
||||
);
|
||||
@@ -335,14 +213,6 @@ const commandsModule = ({
|
||||
* otherwise throws an error.
|
||||
*/
|
||||
storeSegmentation: async ({ segmentationId, dataSource }) => {
|
||||
const promptResult = await createReportDialogPrompt(uiDialogService, {
|
||||
extensionManager,
|
||||
});
|
||||
|
||||
if (promptResult.action !== 1 && !promptResult.value) {
|
||||
return;
|
||||
}
|
||||
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
if (!segmentation) {
|
||||
@@ -350,33 +220,50 @@ const commandsModule = ({
|
||||
}
|
||||
|
||||
const { label } = segmentation;
|
||||
const SeriesDescription = promptResult.value || label || 'Research Derived Series';
|
||||
const defaultDataSource = dataSource ?? extensionManager.getActiveDataSource();
|
||||
|
||||
const generatedData = actions.generateSegmentation({
|
||||
segmentationId,
|
||||
options: {
|
||||
SeriesDescription,
|
||||
},
|
||||
const {
|
||||
value: reportName,
|
||||
dataSourceName: selectedDataSource,
|
||||
action,
|
||||
} = await createReportDialogPrompt({
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
title: 'Store Segmentation',
|
||||
});
|
||||
|
||||
if (!generatedData || !generatedData.dataset) {
|
||||
throw new Error('Error during segmentation generation');
|
||||
if (action === PROMPT_RESPONSES.CREATE_REPORT) {
|
||||
try {
|
||||
const selectedDataSourceConfig = selectedDataSource
|
||||
? extensionManager.getDataSources(selectedDataSource)[0]
|
||||
: defaultDataSource;
|
||||
|
||||
const generatedData = actions.generateSegmentation({
|
||||
segmentationId,
|
||||
options: {
|
||||
SeriesDescription: reportName || label || 'Research Derived Series',
|
||||
},
|
||||
});
|
||||
|
||||
if (!generatedData || !generatedData.dataset) {
|
||||
throw new Error('Error during segmentation generation');
|
||||
}
|
||||
|
||||
const { dataset: naturalizedReport } = generatedData;
|
||||
|
||||
await selectedDataSourceConfig.store.dicom(naturalizedReport);
|
||||
|
||||
// add the information for where we stored it to the instance as well
|
||||
naturalizedReport.wadoRoot = selectedDataSourceConfig.getConfig().wadoRoot;
|
||||
|
||||
DicomMetadataStore.addInstances([naturalizedReport], true);
|
||||
|
||||
return naturalizedReport;
|
||||
} catch (error) {
|
||||
console.debug('Error storing segmentation:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
const { dataset: naturalizedReport } = generatedData;
|
||||
|
||||
await dataSource.store.dicom(naturalizedReport);
|
||||
|
||||
// The "Mode" route listens for DicomMetadataStore changes
|
||||
// When a new instance is added, it listens and
|
||||
// automatically calls makeDisplaySets
|
||||
|
||||
// add the information for where we stored it to the instance as well
|
||||
naturalizedReport.wadoRoot = dataSource.getConfig().wadoRoot;
|
||||
|
||||
DicomMetadataStore.addInstances([naturalizedReport], true);
|
||||
|
||||
return naturalizedReport;
|
||||
},
|
||||
/**
|
||||
* Converts segmentations into RTSS for download.
|
||||
@@ -385,21 +272,24 @@ const commandsModule = ({
|
||||
* converts dataset to downloadable blob.
|
||||
*
|
||||
*/
|
||||
downloadRTSS: ({ segmentationId }) => {
|
||||
downloadRTSS: async ({ segmentationId }) => {
|
||||
const segmentations = segmentationService.getSegmentation(segmentationId);
|
||||
const vtkUtils = {
|
||||
vtkImageMarchingSquares,
|
||||
vtkDataArray,
|
||||
vtkImageData,
|
||||
};
|
||||
|
||||
const RTSS = generateRTSSFromSegmentations(
|
||||
// inject colors to the segmentIndex
|
||||
const firstRepresentation =
|
||||
segmentationService.getRepresentationsForSegmentation(segmentationId)[0];
|
||||
Object.entries(segmentations.segments).forEach(([segmentIndex, segment]) => {
|
||||
segment.color = segmentationService.getSegmentColor(
|
||||
firstRepresentation.viewportId,
|
||||
segmentationId,
|
||||
segmentIndex
|
||||
);
|
||||
});
|
||||
|
||||
const RTSS = await generateRTSSFromSegmentations(
|
||||
segmentations,
|
||||
classes.MetadataProvider,
|
||||
DicomMetadataStore,
|
||||
cache,
|
||||
cornerstoneToolsEnums,
|
||||
vtkUtils
|
||||
DicomMetadataStore
|
||||
);
|
||||
|
||||
try {
|
||||
@@ -412,51 +302,13 @@ const commandsModule = ({
|
||||
console.warn(e);
|
||||
}
|
||||
},
|
||||
setBrushSize: ({ value, toolNames }) => {
|
||||
const brushSize = Number(value);
|
||||
|
||||
toolGroupService.getToolGroupIds()?.forEach(toolGroupId => {
|
||||
if (toolNames?.length === 0) {
|
||||
segmentationUtils.setBrushSizeForToolGroup(toolGroupId, brushSize);
|
||||
} else {
|
||||
toolNames?.forEach(toolName => {
|
||||
segmentationUtils.setBrushSizeForToolGroup(toolGroupId, brushSize, toolName);
|
||||
});
|
||||
}
|
||||
});
|
||||
},
|
||||
setThresholdRange: ({
|
||||
value,
|
||||
toolNames = ['ThresholdCircularBrush', 'ThresholdSphereBrush'],
|
||||
}) => {
|
||||
toolGroupService.getToolGroupIds()?.forEach(toolGroupId => {
|
||||
const toolGroup = toolGroupService.getToolGroup(toolGroupId);
|
||||
toolNames?.forEach(toolName => {
|
||||
toolGroup.setToolConfiguration(toolName, {
|
||||
strategySpecificConfiguration: {
|
||||
THRESHOLD: {
|
||||
threshold: value,
|
||||
},
|
||||
},
|
||||
});
|
||||
});
|
||||
});
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
getUpdatedViewportsForSegmentation: {
|
||||
commandFn: actions.getUpdatedViewportsForSegmentation,
|
||||
},
|
||||
loadSegmentationDisplaySetsForViewport: {
|
||||
commandFn: actions.loadSegmentationDisplaySetsForViewport,
|
||||
},
|
||||
loadSegmentationsForViewport: {
|
||||
commandFn: actions.loadSegmentationsForViewport,
|
||||
},
|
||||
createEmptySegmentationForViewport: {
|
||||
commandFn: actions.createEmptySegmentationForViewport,
|
||||
},
|
||||
|
||||
generateSegmentation: {
|
||||
commandFn: actions.generateSegmentation,
|
||||
},
|
||||
@@ -469,12 +321,6 @@ const commandsModule = ({
|
||||
downloadRTSS: {
|
||||
commandFn: actions.downloadRTSS,
|
||||
},
|
||||
setBrushSize: {
|
||||
commandFn: actions.setBrushSize,
|
||||
},
|
||||
setThresholdRange: {
|
||||
commandFn: actions.setThresholdRange,
|
||||
},
|
||||
};
|
||||
|
||||
return {
|
||||
|
||||
@@ -20,6 +20,17 @@ const segProtocol: Types.HangingProtocol.Protocol = {
|
||||
viewportType: 'stack',
|
||||
toolGroupId: 'default',
|
||||
allowUnmatchedView: true,
|
||||
syncGroups: [
|
||||
{
|
||||
type: 'hydrateseg',
|
||||
id: 'sameFORId',
|
||||
source: true,
|
||||
target: true,
|
||||
// options: {
|
||||
// matchingRules: ['sameFOR'],
|
||||
// },
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
{
|
||||
@@ -52,7 +63,20 @@ const segProtocol: Types.HangingProtocol.Protocol = {
|
||||
},
|
||||
viewports: [
|
||||
{
|
||||
viewportOptions: { allowUnmatchedView: true },
|
||||
viewportOptions: {
|
||||
allowUnmatchedView: true,
|
||||
syncGroups: [
|
||||
{
|
||||
type: 'hydrateseg',
|
||||
id: 'sameFORId',
|
||||
source: true,
|
||||
target: true,
|
||||
// options: {
|
||||
// matchingRules: ['sameFOR'],
|
||||
// },
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
{
|
||||
id: 'segDisplaySetId',
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
import { utils } from '@ohif/core';
|
||||
import { metaData, cache, triggerEvent, eventTarget } from '@cornerstonejs/core';
|
||||
import { CONSTANTS } from '@cornerstonejs/tools';
|
||||
import { metaData, triggerEvent, eventTarget } from '@cornerstonejs/core';
|
||||
import { CONSTANTS, segmentation as cstSegmentation } from '@cornerstonejs/tools';
|
||||
import { adaptersSEG, Enums } from '@cornerstonejs/adapters';
|
||||
|
||||
import { SOPClassHandlerId } from './id';
|
||||
@@ -70,28 +70,32 @@ function _getDisplaySetsFromSeries(
|
||||
|
||||
displaySet.referencedImages = instance.ReferencedSeriesSequence.ReferencedInstanceSequence;
|
||||
displaySet.referencedSeriesInstanceUID = referencedSeries.SeriesInstanceUID;
|
||||
const { displaySetService } = servicesManager.services;
|
||||
const referencedDisplaySets = displaySetService.getDisplaySetsForSeries(
|
||||
displaySet.referencedSeriesInstanceUID
|
||||
);
|
||||
|
||||
displaySet.getReferenceDisplaySet = () => {
|
||||
const { displaySetService } = servicesManager.services;
|
||||
const referencedDisplaySets = displaySetService.getDisplaySetsForSeries(
|
||||
displaySet.referencedSeriesInstanceUID
|
||||
const referencedDisplaySet = referencedDisplaySets[0];
|
||||
|
||||
if (!referencedDisplaySet) {
|
||||
// subscribe to display sets added which means at some point it will be available
|
||||
const { unsubscribe } = displaySetService.subscribe(
|
||||
displaySetService.EVENTS.DISPLAY_SETS_ADDED,
|
||||
({ displaySetsAdded }) => {
|
||||
// here we can also do a little bit of search, since sometimes DICOM SEG
|
||||
// does not contain the referenced display set uid , and we can just
|
||||
// see which of the display sets added is more similar and assign it
|
||||
// to the referencedDisplaySet
|
||||
const addedDisplaySet = displaySetsAdded[0];
|
||||
if (addedDisplaySet.SeriesInstanceUID === displaySet.referencedSeriesInstanceUID) {
|
||||
displaySet.referencedDisplaySetInstanceUID = addedDisplaySet.displaySetInstanceUID;
|
||||
unsubscribe();
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
if (!referencedDisplaySets || referencedDisplaySets.length === 0) {
|
||||
throw new Error('Referenced DisplaySet is missing for the SEG');
|
||||
}
|
||||
|
||||
const referencedDisplaySet = referencedDisplaySets[0];
|
||||
|
||||
} else {
|
||||
displaySet.referencedDisplaySetInstanceUID = referencedDisplaySet.displaySetInstanceUID;
|
||||
|
||||
// Todo: this needs to be able to work with other reference volumes (other than streaming) such as nifti, etc.
|
||||
displaySet.referencedVolumeURI = referencedDisplaySet.displaySetInstanceUID;
|
||||
const referencedVolumeId = `cornerstoneStreamingImageVolume:${displaySet.referencedVolumeURI}`;
|
||||
displaySet.referencedVolumeId = referencedVolumeId;
|
||||
|
||||
return referencedDisplaySet;
|
||||
};
|
||||
}
|
||||
|
||||
displaySet.load = async ({ headers }) =>
|
||||
await _load(displaySet, servicesManager, extensionManager, headers);
|
||||
@@ -111,7 +115,7 @@ function _load(
|
||||
if (
|
||||
(segDisplaySet.loading || segDisplaySet.isLoaded) &&
|
||||
loadPromises[SOPInstanceUID] &&
|
||||
_segmentationExists(segDisplaySet, segmentationService)
|
||||
_segmentationExists(segDisplaySet)
|
||||
) {
|
||||
return loadPromises[SOPInstanceUID];
|
||||
}
|
||||
@@ -122,17 +126,21 @@ function _load(
|
||||
// and also return the same promise to any other callers.
|
||||
loadPromises[SOPInstanceUID] = new Promise(async (resolve, reject) => {
|
||||
if (!segDisplaySet.segments || Object.keys(segDisplaySet.segments).length === 0) {
|
||||
await _loadSegments({
|
||||
extensionManager,
|
||||
servicesManager,
|
||||
segDisplaySet,
|
||||
headers,
|
||||
});
|
||||
try {
|
||||
await _loadSegments({
|
||||
extensionManager,
|
||||
servicesManager,
|
||||
segDisplaySet,
|
||||
headers,
|
||||
});
|
||||
} catch (e) {
|
||||
segDisplaySet.loading = false;
|
||||
return reject(e);
|
||||
}
|
||||
}
|
||||
|
||||
const suppressEvents = true;
|
||||
segmentationService
|
||||
.createSegmentationForSEGDisplaySet(segDisplaySet, null, suppressEvents)
|
||||
.createSegmentationForSEGDisplaySet(segDisplaySet)
|
||||
.then(() => {
|
||||
segDisplaySet.loading = false;
|
||||
resolve();
|
||||
@@ -161,20 +169,24 @@ async function _loadSegments({
|
||||
const { dicomLoaderService } = utilityModule.exports;
|
||||
const arrayBuffer = await dicomLoaderService.findDicomDataPromise(segDisplaySet, null, headers);
|
||||
|
||||
const cachedReferencedVolume = cache.getVolume(segDisplaySet.referencedVolumeId);
|
||||
const referencedDisplaySet = servicesManager.services.displaySetService.getDisplaySetByUID(
|
||||
segDisplaySet.referencedDisplaySetInstanceUID
|
||||
);
|
||||
|
||||
if (!cachedReferencedVolume) {
|
||||
throw new Error(
|
||||
'Referenced Volume is missing for the SEG, and stack viewport SEG is not supported yet'
|
||||
);
|
||||
if (!referencedDisplaySet) {
|
||||
throw new Error('referencedDisplaySet is missing for SEG');
|
||||
}
|
||||
|
||||
const { imageIds } = cachedReferencedVolume;
|
||||
let { imageIds } = referencedDisplaySet;
|
||||
|
||||
if (!imageIds) {
|
||||
// try images
|
||||
const { images } = referencedDisplaySet;
|
||||
imageIds = images.map(image => image.imageId);
|
||||
}
|
||||
|
||||
// Todo: what should be defaults here
|
||||
const tolerance = 0.001;
|
||||
const skipOverlapping = true;
|
||||
|
||||
eventTarget.addEventListener(Enums.Events.SEGMENTATION_LOAD_PROGRESS, evt => {
|
||||
const { percentComplete } = evt.detail;
|
||||
segmentationService._broadcastEvent(segmentationService.EVENTS.SEGMENT_LOADING_COMPLETE, {
|
||||
@@ -182,11 +194,10 @@ async function _loadSegments({
|
||||
});
|
||||
});
|
||||
|
||||
const results = await adaptersSEG.Cornerstone3D.Segmentation.generateToolState(
|
||||
const results = await adaptersSEG.Cornerstone3D.Segmentation.createFromDICOMSegBuffer(
|
||||
imageIds,
|
||||
arrayBuffer,
|
||||
metaData,
|
||||
{ skipOverlapping, tolerance, eventTarget, triggerEvent }
|
||||
{ metadataProvider: metaData, tolerance }
|
||||
);
|
||||
|
||||
let usedRecommendedDisplayCIELabValue = true;
|
||||
@@ -203,15 +214,6 @@ async function _loadSegments({
|
||||
}
|
||||
});
|
||||
|
||||
if (results.overlappingSegments) {
|
||||
uiNotificationService.show({
|
||||
title: 'Overlapping Segments',
|
||||
message:
|
||||
'Unsupported overlapping segments detected, segmentation rendering results may be incorrect.',
|
||||
type: 'warning',
|
||||
});
|
||||
}
|
||||
|
||||
if (!usedRecommendedDisplayCIELabValue) {
|
||||
// Display a notification about the non-utilization of RecommendedDisplayCIELabValue
|
||||
uiNotificationService.show({
|
||||
@@ -226,9 +228,8 @@ async function _loadSegments({
|
||||
Object.assign(segDisplaySet, results);
|
||||
}
|
||||
|
||||
function _segmentationExists(segDisplaySet, segmentationService: AppTypes.SegmentationService) {
|
||||
// This should be abstracted with the CornerstoneCacheService
|
||||
return segmentationService.getSegmentation(segDisplaySet.displaySetInstanceUID);
|
||||
function _segmentationExists(segDisplaySet) {
|
||||
return cstSegmentation.state.getSegmentation(segDisplaySet.displaySetInstanceUID);
|
||||
}
|
||||
|
||||
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
|
||||
|
||||
@@ -1,6 +1,15 @@
|
||||
export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
const { segmentationService, toolbarService, toolGroupService } = servicesManager.services;
|
||||
return [
|
||||
{
|
||||
name: 'evaluate.cornerstone.hasSegmentation',
|
||||
evaluate: ({ viewportId }) => {
|
||||
const segmentations = segmentationService.getSegmentationRepresentations(viewportId);
|
||||
return {
|
||||
disabled: !segmentations?.length,
|
||||
};
|
||||
},
|
||||
},
|
||||
{
|
||||
name: 'evaluate.cornerstone.segmentation',
|
||||
evaluate: ({ viewportId, button, toolNames, disabledText }) => {
|
||||
@@ -8,31 +17,43 @@ export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
// forcing the button to have black background since initially
|
||||
// it is designed for the toolbox not the toolbar on top
|
||||
// we should then branch the buttonSectionId to have different styles
|
||||
const segmentations = segmentationService.getSegmentations();
|
||||
const segmentations = segmentationService.getSegmentationRepresentations(viewportId);
|
||||
if (!segmentations?.length) {
|
||||
return {
|
||||
disabled: true,
|
||||
className: '!text-common-bright !bg-black opacity-50',
|
||||
disabledText: disabledText ?? 'No segmentations available',
|
||||
};
|
||||
}
|
||||
|
||||
const activeSegmentation = segmentationService.getActiveSegmentation(viewportId);
|
||||
if (!Object.keys(activeSegmentation.segments).length) {
|
||||
return {
|
||||
disabled: true,
|
||||
disabledText: 'Add segment to enable this tool',
|
||||
};
|
||||
}
|
||||
|
||||
const toolGroup = toolGroupService.getToolGroupForViewport(viewportId);
|
||||
|
||||
if (!toolGroup) {
|
||||
return {
|
||||
disabled: true,
|
||||
className: '!text-common-bright ohif-disabled',
|
||||
disabledText: disabledText ?? 'Not available on the current viewport',
|
||||
};
|
||||
}
|
||||
|
||||
if (!toolNames) {
|
||||
return {
|
||||
disabled: false,
|
||||
// isActive: false,
|
||||
};
|
||||
}
|
||||
|
||||
const toolName = toolbarService.getToolNameForButton(button);
|
||||
|
||||
if (!toolGroup.hasTool(toolName) && !toolNames) {
|
||||
return {
|
||||
disabled: true,
|
||||
className: '!text-common-bright ohif-disabled',
|
||||
disabledText: disabledText ?? 'Not available on the current viewport',
|
||||
};
|
||||
}
|
||||
@@ -43,12 +64,6 @@ export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
|
||||
return {
|
||||
disabled: false,
|
||||
className: isPrimaryActive
|
||||
? '!text-black !bg-primary-light hover:bg-primary-light hover-text-black hover:cursor-pointer'
|
||||
: '!text-common-bright !bg-black hover:bg-primary-light hover:cursor-pointer hover:text-black',
|
||||
// Todo: isActive right now is used for nested buttons where the primary
|
||||
// button needs to be fully rounded (vs partial rounded) when active
|
||||
// otherwise it does not have any other use
|
||||
isActive: isPrimaryActive,
|
||||
};
|
||||
},
|
||||
|
||||
@@ -3,7 +3,6 @@ import React from 'react';
|
||||
|
||||
import getSopClassHandlerModule from './getSopClassHandlerModule';
|
||||
import getHangingProtocolModule from './getHangingProtocolModule';
|
||||
import getPanelModule from './getPanelModule';
|
||||
import getCommandsModule from './commandsModule';
|
||||
import { getToolbarModule } from './getToolbarModule';
|
||||
|
||||
@@ -28,13 +27,6 @@ const extension = {
|
||||
* You ID can be anything you want, but it should be unique.
|
||||
*/
|
||||
id,
|
||||
/**
|
||||
* PanelModule should provide a list of panels that will be available in OHIF
|
||||
* for Modes to consume and render. Each panel is defined by a {name,
|
||||
* iconName, iconLabel, label, component} object. Example of a panel module
|
||||
* is the StudyBrowserPanel that is provided by the default extension in OHIF.
|
||||
*/
|
||||
getPanelModule,
|
||||
getCommandsModule,
|
||||
getToolbarModule,
|
||||
getViewportModule({ servicesManager, extensionManager, commandsManager }) {
|
||||
|
||||
@@ -1,393 +0,0 @@
|
||||
import { createReportAsync } from '@ohif/extension-default';
|
||||
import React, { useEffect, useState, useCallback } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { SegmentationGroupTable, SegmentationGroupTableExpanded } from '@ohif/ui';
|
||||
import { SegmentationPanelMode } from '../types/segmentation';
|
||||
import callInputDialog from './callInputDialog';
|
||||
import callColorPickerDialog from './colorPickerDialog';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { Separator } from '@ohif/ui-next';
|
||||
|
||||
const components = {
|
||||
[SegmentationPanelMode.Expanded]: SegmentationGroupTableExpanded,
|
||||
[SegmentationPanelMode.Dropdown]: SegmentationGroupTable,
|
||||
};
|
||||
|
||||
export default function PanelSegmentation({
|
||||
servicesManager,
|
||||
commandsManager,
|
||||
extensionManager,
|
||||
configuration,
|
||||
}: withAppTypes) {
|
||||
const {
|
||||
segmentationService,
|
||||
viewportGridService,
|
||||
uiDialogService,
|
||||
displaySetService,
|
||||
cornerstoneViewportService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const { t } = useTranslation('PanelSegmentation');
|
||||
|
||||
const [selectedSegmentationId, setSelectedSegmentationId] = useState(null);
|
||||
const [addSegmentationClassName, setAddSegmentationClassName] = useState('');
|
||||
const [segmentationConfiguration, setSegmentationConfiguration] = useState(
|
||||
segmentationService.getConfiguration()
|
||||
);
|
||||
|
||||
const [segmentations, setSegmentations] = useState(() => segmentationService.getSegmentations());
|
||||
|
||||
useEffect(() => {
|
||||
// ~~ Subscription
|
||||
const added = segmentationService.EVENTS.SEGMENTATION_ADDED;
|
||||
const updated = segmentationService.EVENTS.SEGMENTATION_UPDATED;
|
||||
const removed = segmentationService.EVENTS.SEGMENTATION_REMOVED;
|
||||
const subscriptions = [];
|
||||
|
||||
[added, updated, removed].forEach(evt => {
|
||||
const { unsubscribe } = segmentationService.subscribe(evt, () => {
|
||||
const segmentations = segmentationService.getSegmentations();
|
||||
setSegmentations(segmentations);
|
||||
setSegmentationConfiguration(segmentationService.getConfiguration());
|
||||
});
|
||||
subscriptions.push(unsubscribe);
|
||||
});
|
||||
|
||||
return () => {
|
||||
subscriptions.forEach(unsub => {
|
||||
unsub();
|
||||
});
|
||||
};
|
||||
}, []);
|
||||
|
||||
// temporary measure to not allow add segmentation when the selected viewport
|
||||
// is stack viewport
|
||||
useEffect(() => {
|
||||
const handleActiveViewportChange = viewportId => {
|
||||
const displaySetUIDs = viewportGridService.getDisplaySetsUIDsForViewport(
|
||||
viewportId || viewportGridService.getActiveViewportId()
|
||||
);
|
||||
|
||||
if (!displaySetUIDs) {
|
||||
return;
|
||||
}
|
||||
|
||||
const isReconstructable =
|
||||
displaySetUIDs?.some(displaySetUID => {
|
||||
const displaySet = displaySetService.getDisplaySetByUID(displaySetUID);
|
||||
return displaySet?.isReconstructable;
|
||||
}) || false;
|
||||
|
||||
if (isReconstructable) {
|
||||
setAddSegmentationClassName('');
|
||||
} else {
|
||||
setAddSegmentationClassName('ohif-disabled');
|
||||
}
|
||||
};
|
||||
|
||||
// Handle initial state
|
||||
handleActiveViewportChange();
|
||||
|
||||
const changedGrid = viewportGridService.EVENTS.ACTIVE_VIEWPORT_ID_CHANGED;
|
||||
const ready = viewportGridService.EVENTS.VIEWPORTS_READY;
|
||||
|
||||
const subsGrid = [];
|
||||
[ready, changedGrid].forEach(evt => {
|
||||
const { unsubscribe } = viewportGridService.subscribe(evt, ({ viewportId }) => {
|
||||
handleActiveViewportChange(viewportId);
|
||||
});
|
||||
|
||||
subsGrid.push(unsubscribe);
|
||||
});
|
||||
|
||||
const changedData = cornerstoneViewportService.EVENTS.VIEWPORT_DATA_CHANGED;
|
||||
|
||||
const subsData = [];
|
||||
[changedData].forEach(evt => {
|
||||
const { unsubscribe } = cornerstoneViewportService.subscribe(evt, () => {
|
||||
handleActiveViewportChange();
|
||||
});
|
||||
|
||||
subsData.push(unsubscribe);
|
||||
});
|
||||
|
||||
// Clean up
|
||||
return () => {
|
||||
subsGrid.forEach(unsub => unsub());
|
||||
subsData.forEach(unsub => unsub());
|
||||
};
|
||||
}, []);
|
||||
|
||||
const getToolGroupIds = segmentationId => {
|
||||
const toolGroupIds = segmentationService.getToolGroupIdsWithSegmentation(segmentationId);
|
||||
|
||||
return toolGroupIds;
|
||||
};
|
||||
|
||||
const onSegmentationAdd = async () => {
|
||||
commandsManager.runCommand('createEmptySegmentationForViewport', {
|
||||
viewportId: viewportGridService.getActiveViewportId(),
|
||||
});
|
||||
};
|
||||
|
||||
const onSegmentationClick = (segmentationId: string) => {
|
||||
segmentationService.setActiveSegmentationForToolGroup(segmentationId);
|
||||
};
|
||||
|
||||
const onSegmentationDelete = (segmentationId: string) => {
|
||||
segmentationService.remove(segmentationId);
|
||||
};
|
||||
|
||||
const onSegmentAdd = segmentationId => {
|
||||
segmentationService.addSegment(segmentationId);
|
||||
};
|
||||
|
||||
const onSegmentClick = (segmentationId, segmentIndex) => {
|
||||
segmentationService.setActiveSegment(segmentationId, segmentIndex);
|
||||
|
||||
const toolGroupIds = getToolGroupIds(segmentationId);
|
||||
|
||||
toolGroupIds.forEach(toolGroupId => {
|
||||
// const toolGroupId =
|
||||
segmentationService.setActiveSegmentationForToolGroup(segmentationId, toolGroupId);
|
||||
segmentationService.jumpToSegmentCenter(segmentationId, segmentIndex, toolGroupId);
|
||||
});
|
||||
};
|
||||
|
||||
const onSegmentEdit = (segmentationId, segmentIndex) => {
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
const segment = segmentation.segments[segmentIndex];
|
||||
const { label } = segment;
|
||||
|
||||
callInputDialog(uiDialogService, label, (label, actionId) => {
|
||||
if (label === '') {
|
||||
return;
|
||||
}
|
||||
|
||||
segmentationService.setSegmentLabel(segmentationId, segmentIndex, label);
|
||||
});
|
||||
};
|
||||
|
||||
const onSegmentationEdit = segmentationId => {
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
const { label } = segmentation;
|
||||
|
||||
callInputDialog(uiDialogService, label, (label, actionId) => {
|
||||
if (label === '') {
|
||||
return;
|
||||
}
|
||||
|
||||
segmentationService.addOrUpdateSegmentation(
|
||||
{
|
||||
id: segmentationId,
|
||||
label,
|
||||
},
|
||||
false, // suppress event
|
||||
true // notYetUpdatedAtSource
|
||||
);
|
||||
});
|
||||
};
|
||||
|
||||
const onSegmentColorClick = (segmentationId, segmentIndex) => {
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
const segment = segmentation.segments[segmentIndex];
|
||||
const { color, opacity } = segment;
|
||||
|
||||
const rgbaColor = {
|
||||
r: color[0],
|
||||
g: color[1],
|
||||
b: color[2],
|
||||
a: opacity / 255.0,
|
||||
};
|
||||
|
||||
callColorPickerDialog(uiDialogService, rgbaColor, (newRgbaColor, actionId) => {
|
||||
if (actionId === 'cancel') {
|
||||
return;
|
||||
}
|
||||
|
||||
segmentationService.setSegmentRGBAColor(segmentationId, segmentIndex, [
|
||||
newRgbaColor.r,
|
||||
newRgbaColor.g,
|
||||
newRgbaColor.b,
|
||||
newRgbaColor.a * 255.0,
|
||||
]);
|
||||
});
|
||||
};
|
||||
|
||||
const onSegmentDelete = (segmentationId, segmentIndex) => {
|
||||
segmentationService.removeSegment(segmentationId, segmentIndex);
|
||||
};
|
||||
|
||||
// segment hide
|
||||
const onToggleSegmentVisibility = (segmentationId, segmentIndex) => {
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
const segmentInfo = segmentation.segments[segmentIndex];
|
||||
const isVisible = !segmentInfo.isVisible;
|
||||
const toolGroupIds = getToolGroupIds(segmentationId);
|
||||
|
||||
// Todo: right now we apply the visibility to all tool groups
|
||||
toolGroupIds.forEach(toolGroupId => {
|
||||
segmentationService.setSegmentVisibility(
|
||||
segmentationId,
|
||||
segmentIndex,
|
||||
isVisible,
|
||||
toolGroupId
|
||||
);
|
||||
});
|
||||
};
|
||||
|
||||
const onToggleSegmentLock = (segmentationId, segmentIndex) => {
|
||||
segmentationService.toggleSegmentLocked(segmentationId, segmentIndex);
|
||||
};
|
||||
|
||||
const onToggleSegmentationVisibility = segmentationId => {
|
||||
segmentationService.toggleSegmentationVisibility(segmentationId);
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
const isVisible = segmentation.isVisible;
|
||||
const segments = segmentation.segments;
|
||||
|
||||
const toolGroupIds = getToolGroupIds(segmentationId);
|
||||
|
||||
toolGroupIds.forEach(toolGroupId => {
|
||||
segments.forEach((segment, segmentIndex) => {
|
||||
segmentationService.setSegmentVisibility(
|
||||
segmentationId,
|
||||
segmentIndex,
|
||||
isVisible,
|
||||
toolGroupId
|
||||
);
|
||||
});
|
||||
});
|
||||
};
|
||||
|
||||
const _setSegmentationConfiguration = useCallback(
|
||||
(segmentationId, key, value) => {
|
||||
segmentationService.setConfiguration({
|
||||
segmentationId,
|
||||
[key]: value,
|
||||
});
|
||||
},
|
||||
[segmentationService]
|
||||
);
|
||||
|
||||
const onSegmentationDownload = segmentationId => {
|
||||
commandsManager.runCommand('downloadSegmentation', {
|
||||
segmentationId,
|
||||
});
|
||||
};
|
||||
|
||||
const storeSegmentation = async segmentationId => {
|
||||
const datasources = extensionManager.getActiveDataSource();
|
||||
|
||||
const displaySetInstanceUIDs = await createReportAsync({
|
||||
servicesManager,
|
||||
getReport: () =>
|
||||
commandsManager.runCommand('storeSegmentation', {
|
||||
segmentationId,
|
||||
dataSource: datasources[0],
|
||||
}),
|
||||
reportType: 'Segmentation',
|
||||
});
|
||||
|
||||
// Show the exported report in the active viewport as read only (similar to SR)
|
||||
if (displaySetInstanceUIDs) {
|
||||
// clear the segmentation that we exported, similar to the storeMeasurement
|
||||
// where we remove the measurements and prompt again the user if they would like
|
||||
// to re-read the measurements in a SR read only viewport
|
||||
segmentationService.remove(segmentationId);
|
||||
|
||||
viewportGridService.setDisplaySetsForViewport({
|
||||
viewportId: viewportGridService.getActiveViewportId(),
|
||||
displaySetInstanceUIDs,
|
||||
});
|
||||
}
|
||||
};
|
||||
|
||||
const onSegmentationDownloadRTSS = segmentationId => {
|
||||
commandsManager.runCommand('downloadRTSS', {
|
||||
segmentationId,
|
||||
});
|
||||
};
|
||||
|
||||
const SegmentationGroupTableComponent =
|
||||
components[configuration?.segmentationPanelMode] || SegmentationGroupTable;
|
||||
const allowAddSegment = configuration?.addSegment;
|
||||
const onSegmentationAddWrapper =
|
||||
configuration?.onSegmentationAdd && typeof configuration?.onSegmentationAdd === 'function'
|
||||
? configuration?.onSegmentationAdd
|
||||
: onSegmentationAdd;
|
||||
|
||||
return (
|
||||
<>
|
||||
<SegmentationGroupTableComponent
|
||||
title={t('Segmentations')}
|
||||
segmentations={segmentations}
|
||||
disableEditing={configuration.disableEditing}
|
||||
activeSegmentationId={selectedSegmentationId || ''}
|
||||
onSegmentationAdd={onSegmentationAddWrapper}
|
||||
addSegmentationClassName={addSegmentationClassName}
|
||||
showAddSegment={allowAddSegment}
|
||||
onSegmentationClick={onSegmentationClick}
|
||||
onSegmentationDelete={onSegmentationDelete}
|
||||
onSegmentationDownload={onSegmentationDownload}
|
||||
onSegmentationDownloadRTSS={onSegmentationDownloadRTSS}
|
||||
storeSegmentation={storeSegmentation}
|
||||
onSegmentationEdit={onSegmentationEdit}
|
||||
onSegmentClick={onSegmentClick}
|
||||
onSegmentEdit={onSegmentEdit}
|
||||
onSegmentAdd={onSegmentAdd}
|
||||
onSegmentColorClick={onSegmentColorClick}
|
||||
onSegmentDelete={onSegmentDelete}
|
||||
onToggleSegmentVisibility={onToggleSegmentVisibility}
|
||||
onToggleSegmentLock={onToggleSegmentLock}
|
||||
onToggleSegmentationVisibility={onToggleSegmentationVisibility}
|
||||
showDeleteSegment={true}
|
||||
segmentationConfig={{ initialConfig: segmentationConfiguration }}
|
||||
setRenderOutline={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'renderOutline', value)
|
||||
}
|
||||
setOutlineOpacityActive={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'outlineOpacity', value)
|
||||
}
|
||||
setRenderFill={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'renderFill', value)
|
||||
}
|
||||
setRenderInactiveSegmentations={value =>
|
||||
_setSegmentationConfiguration(
|
||||
selectedSegmentationId,
|
||||
'renderInactiveSegmentations',
|
||||
value
|
||||
)
|
||||
}
|
||||
setOutlineWidthActive={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'outlineWidthActive', value)
|
||||
}
|
||||
setFillAlpha={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'fillAlpha', value)
|
||||
}
|
||||
setFillAlphaInactive={value =>
|
||||
_setSegmentationConfiguration(selectedSegmentationId, 'fillAlphaInactive', value)
|
||||
}
|
||||
/>
|
||||
</>
|
||||
);
|
||||
}
|
||||
|
||||
PanelSegmentation.propTypes = {
|
||||
commandsManager: PropTypes.shape({
|
||||
runCommand: PropTypes.func.isRequired,
|
||||
}),
|
||||
servicesManager: PropTypes.shape({
|
||||
services: PropTypes.shape({
|
||||
segmentationService: PropTypes.shape({
|
||||
getSegmentation: PropTypes.func.isRequired,
|
||||
getSegmentations: PropTypes.func.isRequired,
|
||||
toggleSegmentationVisibility: PropTypes.func.isRequired,
|
||||
subscribe: PropTypes.func.isRequired,
|
||||
EVENTS: PropTypes.object.isRequired,
|
||||
}).isRequired,
|
||||
}).isRequired,
|
||||
}).isRequired,
|
||||
};
|
||||
@@ -1,62 +0,0 @@
|
||||
import React from 'react';
|
||||
import { Input, Dialog, ButtonEnums } from '@ohif/ui';
|
||||
|
||||
function callInputDialog(uiDialogService, label, callback) {
|
||||
const dialogId = 'enter-segment-label';
|
||||
|
||||
const onSubmitHandler = ({ action, value }) => {
|
||||
switch (action.id) {
|
||||
case 'save':
|
||||
callback(value.label, action.id);
|
||||
break;
|
||||
case 'cancel':
|
||||
callback('', action.id);
|
||||
break;
|
||||
}
|
||||
uiDialogService.dismiss({ id: dialogId });
|
||||
};
|
||||
|
||||
if (uiDialogService) {
|
||||
uiDialogService.create({
|
||||
id: dialogId,
|
||||
centralize: true,
|
||||
isDraggable: false,
|
||||
showOverlay: true,
|
||||
content: Dialog,
|
||||
contentProps: {
|
||||
title: 'Segment',
|
||||
value: { label },
|
||||
noCloseButton: true,
|
||||
onClose: () => uiDialogService.dismiss({ id: dialogId }),
|
||||
actions: [
|
||||
{ id: 'cancel', text: 'Cancel', type: ButtonEnums.type.secondary },
|
||||
{ id: 'save', text: 'Confirm', type: ButtonEnums.type.primary },
|
||||
],
|
||||
onSubmit: onSubmitHandler,
|
||||
body: ({ value, setValue }) => {
|
||||
return (
|
||||
<Input
|
||||
label="Enter the segment label"
|
||||
labelClassName="text-white text-[14px] leading-[1.2]"
|
||||
autoFocus
|
||||
className="border-primary-main bg-black"
|
||||
type="text"
|
||||
value={value.label}
|
||||
onChange={event => {
|
||||
event.persist();
|
||||
setValue(value => ({ ...value, label: event.target.value }));
|
||||
}}
|
||||
onKeyPress={event => {
|
||||
if (event.key === 'Enter') {
|
||||
onSubmitHandler({ value, action: { id: 'save' } });
|
||||
}
|
||||
}}
|
||||
/>
|
||||
);
|
||||
},
|
||||
},
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
export default callInputDialog;
|
||||
@@ -1,58 +0,0 @@
|
||||
import React from 'react';
|
||||
import { Dialog } from '@ohif/ui';
|
||||
import { ChromePicker } from 'react-color';
|
||||
|
||||
import './colorPickerDialog.css';
|
||||
|
||||
function callColorPickerDialog(uiDialogService, rgbaColor, callback) {
|
||||
const dialogId = 'pick-color';
|
||||
|
||||
const onSubmitHandler = ({ action, value }) => {
|
||||
switch (action.id) {
|
||||
case 'save':
|
||||
callback(value.rgbaColor, action.id);
|
||||
break;
|
||||
case 'cancel':
|
||||
callback('', action.id);
|
||||
break;
|
||||
}
|
||||
uiDialogService.dismiss({ id: dialogId });
|
||||
};
|
||||
|
||||
if (uiDialogService) {
|
||||
uiDialogService.create({
|
||||
id: dialogId,
|
||||
centralize: true,
|
||||
isDraggable: false,
|
||||
showOverlay: true,
|
||||
content: Dialog,
|
||||
contentProps: {
|
||||
title: 'Segment Color',
|
||||
value: { rgbaColor },
|
||||
noCloseButton: true,
|
||||
onClose: () => uiDialogService.dismiss({ id: dialogId }),
|
||||
actions: [
|
||||
{ id: 'cancel', text: 'Cancel', type: 'primary' },
|
||||
{ id: 'save', text: 'Save', type: 'secondary' },
|
||||
],
|
||||
onSubmit: onSubmitHandler,
|
||||
body: ({ value, setValue }) => {
|
||||
const handleChange = color => {
|
||||
setValue({ rgbaColor: color.rgb });
|
||||
};
|
||||
|
||||
return (
|
||||
<ChromePicker
|
||||
color={value.rgbaColor}
|
||||
onChange={handleChange}
|
||||
presetColors={[]}
|
||||
width={300}
|
||||
/>
|
||||
);
|
||||
},
|
||||
},
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
export default callColorPickerDialog;
|
||||
@@ -1,33 +0,0 @@
|
||||
// Todo: use defaults in cs3d
|
||||
const initialState = {
|
||||
renderOutline: true,
|
||||
renderFill: true,
|
||||
outlineOpacity: 0.9,
|
||||
outlineWidth: 3,
|
||||
fillOpacity: 0.9,
|
||||
fillOpacityInactive: 0.8,
|
||||
renderInactiveSegmentations: true,
|
||||
};
|
||||
|
||||
const reducer = (state, action) => {
|
||||
switch (action.type) {
|
||||
case 'RENDER_OUTLINE':
|
||||
return { ...state, renderOutline: action.payload.value };
|
||||
case 'RENDER_FILL':
|
||||
return { ...state, renderFill: action.payload.value };
|
||||
case 'SET_OUTLINE_OPACITY':
|
||||
return { ...state, outlineOpacity: action.payload.value };
|
||||
case 'SET_OUTLINE_WIDTH':
|
||||
return { ...state, outlineWidth: action.payload.value };
|
||||
case 'SET_FILL_OPACITY':
|
||||
return { ...state, fillOpacity: action.payload.value };
|
||||
case 'SET_FILL_OPACITY_INACTIVE':
|
||||
return { ...state, fillOpacityInactive: action.payload.value };
|
||||
case 'RENDER_INACTIVE_SEGMENTATIONS':
|
||||
return { ...state, renderInactiveSegmentations: action.payload.value };
|
||||
default:
|
||||
return state;
|
||||
}
|
||||
};
|
||||
|
||||
export { initialState, reducer };
|
||||
@@ -1,203 +0,0 @@
|
||||
import { Enums, cache } from '@cornerstonejs/core';
|
||||
|
||||
/**
|
||||
* Updates the viewports in preparation for rendering segmentations.
|
||||
* Evaluates each viewport to determine which need modifications,
|
||||
* then for those viewports, changes them to a volume type and ensures
|
||||
* they are ready for segmentation rendering.
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.viewportId - ID of the viewport to be updated.
|
||||
* @param params.loadFn - Function to load the segmentation data.
|
||||
* @param params.servicesManager - The services manager.
|
||||
* @param params.displaySet - the display set.
|
||||
* @param params.initialSliceIndex - The initial slice index.
|
||||
*
|
||||
* @returns Returns true upon successful update of viewports for segmentation rendering.
|
||||
*/
|
||||
async function updateViewportsForSegmentationRendering({
|
||||
viewportId,
|
||||
loadFn,
|
||||
servicesManager,
|
||||
displaySet,
|
||||
initialSliceIndex = null,
|
||||
}: {
|
||||
viewportId: string;
|
||||
loadFn: () => Promise<string>;
|
||||
servicesManager: AppTypes.ServicesManager;
|
||||
displaySet?: any;
|
||||
initialSliceIndex?: number;
|
||||
}) {
|
||||
const { cornerstoneViewportService, segmentationService, viewportGridService } =
|
||||
servicesManager.services;
|
||||
|
||||
const viewport = getTargetViewport({ viewportId, viewportGridService });
|
||||
const targetViewportId = viewport.viewportOptions.viewportId;
|
||||
|
||||
const referencedDisplaySetInstanceUID =
|
||||
displaySet?.referencedDisplaySetInstanceUID || viewport?.displaySetInstanceUIDs[0];
|
||||
|
||||
const updatedViewports = getUpdatedViewportsForSegmentation({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
displaySet,
|
||||
});
|
||||
|
||||
// create Segmentation callback which needs to be waited until
|
||||
// the volume is created (if coming from stack)
|
||||
const createSegmentationForVolume = async () => {
|
||||
const segmentationId = await loadFn();
|
||||
segmentationService.hydrateSegmentation(segmentationId);
|
||||
};
|
||||
|
||||
// the reference volume that is used to draw the segmentation. so check if the
|
||||
// volume exists in the cache (the target Viewport is already a volume viewport)
|
||||
const volumeExists = Array.from(cache._volumeCache.keys()).some(volumeId =>
|
||||
volumeId.includes(referencedDisplaySetInstanceUID)
|
||||
);
|
||||
|
||||
updatedViewports.forEach(async viewport => {
|
||||
viewport.viewportOptions = {
|
||||
...viewport.viewportOptions,
|
||||
viewportType: displaySet?.Modality === 'RTSTRUCT' ? 'stack' : 'volume',
|
||||
needsRerendering: true,
|
||||
};
|
||||
const viewportId = viewport.viewportId;
|
||||
|
||||
// maintain the prehydration slice on the target viewport only
|
||||
if (viewportId === targetViewportId) {
|
||||
viewport.viewportOptions.initialImageOptions = {
|
||||
index: initialSliceIndex,
|
||||
useOnce: true,
|
||||
};
|
||||
}
|
||||
|
||||
const csViewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
const prevCamera = csViewport.getCamera();
|
||||
|
||||
// only run the createSegmentationForVolume for the targetViewportId
|
||||
// since the rest will get handled by cornerstoneViewportService
|
||||
if ((volumeExists || displaySet.Modality === 'RTSTRUCT') && viewportId === targetViewportId) {
|
||||
await createSegmentationForVolume();
|
||||
return;
|
||||
}
|
||||
|
||||
const createNewSegmentationWhenVolumeMounts = async evt => {
|
||||
const isTheActiveViewportVolumeMounted = evt.detail.volumeActors?.find(ac =>
|
||||
ac.uid.includes(referencedDisplaySetInstanceUID)
|
||||
);
|
||||
|
||||
// Note: make sure to re-grab the viewport since it might have changed
|
||||
// during the time it took for the volume to be mounted, for instance
|
||||
// the stack viewport has been changed to a volume viewport
|
||||
const volumeViewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
volumeViewport.setCamera(prevCamera);
|
||||
|
||||
volumeViewport.element.removeEventListener(
|
||||
Enums.Events.VOLUME_VIEWPORT_NEW_VOLUME,
|
||||
createNewSegmentationWhenVolumeMounts
|
||||
);
|
||||
|
||||
if (!isTheActiveViewportVolumeMounted) {
|
||||
// it means it is one of those other updated viewports so just update the camera
|
||||
return;
|
||||
}
|
||||
|
||||
if (viewportId === targetViewportId) {
|
||||
await createSegmentationForVolume();
|
||||
}
|
||||
};
|
||||
|
||||
csViewport.element.addEventListener(
|
||||
Enums.Events.VOLUME_VIEWPORT_NEW_VOLUME,
|
||||
createNewSegmentationWhenVolumeMounts
|
||||
);
|
||||
});
|
||||
|
||||
// Set the displaySets for the viewports that require to be updated
|
||||
viewportGridService.setDisplaySetsForViewports(updatedViewports);
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
const getTargetViewport = ({ viewportId, viewportGridService }) => {
|
||||
const { viewports, activeViewportId } = viewportGridService.getState();
|
||||
const targetViewportId = viewportId || activeViewportId;
|
||||
|
||||
const viewport = viewports.get(targetViewportId);
|
||||
|
||||
return viewport;
|
||||
};
|
||||
|
||||
/**
|
||||
* Retrieves a list of viewports that require updates in preparation for segmentation rendering.
|
||||
* This function evaluates viewports based on their compatibility with the provided segmentation's
|
||||
* frame of reference UID and appends them to the updated list if they should render the segmentation.
|
||||
*
|
||||
* @param {Object} params - Parameters for the function.
|
||||
* @param params.viewportId - the ID of the viewport to be updated.
|
||||
* @param params.servicesManager - The services manager
|
||||
* @param params.displaySet - the display set.
|
||||
*
|
||||
* @returns {Array} Returns an array of viewports that require updates for segmentation rendering.
|
||||
*/
|
||||
function getUpdatedViewportsForSegmentation({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
displaySet,
|
||||
}: withAppTypes) {
|
||||
const { hangingProtocolService, displaySetService, segmentationService, viewportGridService } =
|
||||
servicesManager.services;
|
||||
|
||||
const { viewports, isHangingProtocolLayout } = viewportGridService.getState();
|
||||
|
||||
const viewport = getTargetViewport({ viewportId, viewportGridService });
|
||||
const targetViewportId = viewport.viewportOptions.viewportId;
|
||||
|
||||
const displaySetInstanceUIDs = viewports.get(targetViewportId).displaySetInstanceUIDs;
|
||||
|
||||
const referenceDisplaySetInstanceUID =
|
||||
displaySet?.referencedDisplaySetInstanceUID || displaySetInstanceUIDs[0];
|
||||
|
||||
const referencedDisplaySet = displaySetService.getDisplaySetByUID(referenceDisplaySetInstanceUID);
|
||||
const segmentationFrameOfReferenceUID = referencedDisplaySet.instances[0].FrameOfReferenceUID;
|
||||
|
||||
const updatedViewports = hangingProtocolService.getViewportsRequireUpdate(
|
||||
targetViewportId,
|
||||
referenceDisplaySetInstanceUID,
|
||||
isHangingProtocolLayout
|
||||
);
|
||||
|
||||
viewports.forEach((viewport, viewportId) => {
|
||||
if (
|
||||
targetViewportId === viewportId ||
|
||||
updatedViewports.find(v => v.viewportId === viewportId)
|
||||
) {
|
||||
return;
|
||||
}
|
||||
|
||||
const shouldDisplaySeg = segmentationService.shouldRenderSegmentation(
|
||||
viewport.displaySetInstanceUIDs,
|
||||
segmentationFrameOfReferenceUID
|
||||
);
|
||||
|
||||
if (shouldDisplaySeg) {
|
||||
updatedViewports.push({
|
||||
viewportId,
|
||||
displaySetInstanceUIDs: viewport.displaySetInstanceUIDs,
|
||||
viewportOptions: {
|
||||
viewportType: displaySet?.Modality === 'RTSTRUCT' ? 'stack' : 'volume',
|
||||
needsRerendering: true,
|
||||
},
|
||||
});
|
||||
}
|
||||
});
|
||||
|
||||
return updatedViewports.filter(v => v.viewportOptions?.viewportType !== 'volume3d');
|
||||
}
|
||||
|
||||
export {
|
||||
updateViewportsForSegmentationRendering,
|
||||
getUpdatedViewportsForSegmentation,
|
||||
getTargetViewport,
|
||||
};
|
||||
@@ -1,5 +1,5 @@
|
||||
function createSEGToolGroupAndAddTools(ToolGroupService, customizationService, toolGroupId) {
|
||||
const { tools } = customizationService.get('cornerstone.overlayViewportTools') ?? {};
|
||||
const tools = customizationService.getCustomization('cornerstone.overlayViewportTools');
|
||||
|
||||
return ToolGroupService.createToolGroupAndAddTools(toolGroupId, tools);
|
||||
}
|
||||
|
||||
@@ -1,5 +1,3 @@
|
||||
import { ButtonEnums } from '@ohif/ui';
|
||||
|
||||
const RESPONSE = {
|
||||
NO_NEVER: -1,
|
||||
CANCEL: 0,
|
||||
@@ -11,16 +9,16 @@ function promptHydrateSEG({
|
||||
segDisplaySet,
|
||||
viewportId,
|
||||
preHydrateCallbacks,
|
||||
hydrateSEGDisplaySet,
|
||||
hydrateCallback,
|
||||
}: withAppTypes) {
|
||||
const { uiViewportDialogService } = servicesManager.services;
|
||||
const { uiViewportDialogService, customizationService } = servicesManager.services;
|
||||
const extensionManager = servicesManager._extensionManager;
|
||||
const appConfig = extensionManager._appConfig;
|
||||
|
||||
return new Promise(async function (resolve, reject) {
|
||||
const promptResult = appConfig?.disableConfirmationPrompts
|
||||
? RESPONSE.HYDRATE_SEG
|
||||
: await _askHydrate(uiViewportDialogService, viewportId);
|
||||
: await _askHydrate(uiViewportDialogService, customizationService, viewportId);
|
||||
|
||||
if (promptResult === RESPONSE.HYDRATE_SEG) {
|
||||
preHydrateCallbacks?.forEach(callback => {
|
||||
@@ -28,7 +26,7 @@ function promptHydrateSEG({
|
||||
});
|
||||
|
||||
window.setTimeout(async () => {
|
||||
const isHydrated = await hydrateSEGDisplaySet({
|
||||
const isHydrated = await hydrateCallback({
|
||||
segDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
@@ -39,19 +37,23 @@ function promptHydrateSEG({
|
||||
});
|
||||
}
|
||||
|
||||
function _askHydrate(uiViewportDialogService, viewportId) {
|
||||
function _askHydrate(
|
||||
uiViewportDialogService: AppTypes.UIViewportDialogService,
|
||||
customizationService: AppTypes.CustomizationService,
|
||||
viewportId
|
||||
) {
|
||||
return new Promise(function (resolve, reject) {
|
||||
const message = 'Do you want to open this Segmentation?';
|
||||
const message = customizationService.getCustomization('viewportNotification.hydrateSEGMessage');
|
||||
const actions = [
|
||||
{
|
||||
id: 'no-hydrate',
|
||||
type: ButtonEnums.type.secondary,
|
||||
type: 'secondary',
|
||||
text: 'No',
|
||||
value: RESPONSE.CANCEL,
|
||||
},
|
||||
{
|
||||
id: 'yes-hydrate',
|
||||
type: ButtonEnums.type.primary,
|
||||
type: 'primary',
|
||||
text: 'Yes',
|
||||
value: RESPONSE.HYDRATE_SEG,
|
||||
},
|
||||
|
||||
@@ -1,10 +1,13 @@
|
||||
import PropTypes from 'prop-types';
|
||||
import React, { useCallback, useEffect, useRef, useState } from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { LoadingIndicatorTotalPercent, useViewportGrid, ViewportActionArrows } from '@ohif/ui';
|
||||
import { ViewportActionArrows } from '@ohif/ui-next';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import createSEGToolGroupAndAddTools from '../utils/initSEGToolGroup';
|
||||
import promptHydrateSEG from '../utils/promptHydrateSEG';
|
||||
import _getStatusComponent from './_getStatusComponent';
|
||||
import { usePositionPresentationStore } from '@ohif/extension-cornerstone';
|
||||
import { SegmentationRepresentations } from '@cornerstonejs/tools/enums';
|
||||
import { utils } from '@ohif/extension-cornerstone';
|
||||
|
||||
const SEG_TOOLGROUP_BASE_NAME = 'SEGToolGroup';
|
||||
|
||||
@@ -29,6 +32,10 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
viewportActionCornersService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const LoadingIndicatorTotalPercent = customizationService.getCustomization(
|
||||
'ui.loadingIndicatorTotalPercent'
|
||||
);
|
||||
|
||||
const toolGroupId = `${SEG_TOOLGROUP_BASE_NAME}-${viewportId}`;
|
||||
|
||||
// SEG viewport will always have a single display set
|
||||
@@ -37,11 +44,11 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
}
|
||||
|
||||
const segDisplaySet = displaySets[0];
|
||||
|
||||
const [viewportGrid, viewportGridService] = useViewportGrid();
|
||||
|
||||
// States
|
||||
const [selectedSegment, setSelectedSegment] = useState(1);
|
||||
const selectedSegmentObjectIndex: number = 0;
|
||||
const { setPositionPresentation } = usePositionPresentationStore();
|
||||
|
||||
// Hydration means that the SEG is opened and segments are loaded into the
|
||||
// segmentation panel, and SEG is also rendered on any viewport that is in the
|
||||
@@ -61,7 +68,11 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
|
||||
const { viewports, activeViewportId } = viewportGrid;
|
||||
|
||||
const referencedDisplaySet = segDisplaySet.getReferenceDisplaySet();
|
||||
const referencedDisplaySetInstanceUID = segDisplaySet.referencedDisplaySetInstanceUID;
|
||||
const referencedDisplaySet = displaySetService.getDisplaySetByUID(
|
||||
referencedDisplaySetInstanceUID
|
||||
);
|
||||
|
||||
const referencedDisplaySetMetadata = _getReferencedDisplaySetMetadata(
|
||||
referencedDisplaySet,
|
||||
segDisplaySet
|
||||
@@ -98,18 +109,17 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
'@ohif/extension-cornerstone.viewportModule.cornerstone'
|
||||
);
|
||||
|
||||
const { displaySet: referencedDisplaySet } = referencedDisplaySetRef.current;
|
||||
|
||||
// Todo: jump to the center of the first segment
|
||||
return (
|
||||
<Component
|
||||
{...props}
|
||||
displaySets={[referencedDisplaySet, segDisplaySet]}
|
||||
displaySets={[segDisplaySet]}
|
||||
viewportOptions={{
|
||||
viewportType: 'volume',
|
||||
viewportType: viewportOptions.viewportType,
|
||||
toolGroupId: toolGroupId,
|
||||
orientation: viewportOptions.orientation,
|
||||
viewportId: viewportOptions.viewportId,
|
||||
presentationIds: viewportOptions.presentationIds,
|
||||
}}
|
||||
onElementEnabled={evt => {
|
||||
props.onElementEnabled?.(evt);
|
||||
@@ -122,29 +132,40 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
|
||||
const onSegmentChange = useCallback(
|
||||
direction => {
|
||||
const segmentationId = segDisplaySet.displaySetInstanceUID;
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
const { segments } = segmentation;
|
||||
|
||||
const numberOfSegments = Object.keys(segments).length;
|
||||
|
||||
let newSelectedSegmentIndex = selectedSegment + direction;
|
||||
|
||||
// Segment 0 is always background
|
||||
|
||||
if (newSelectedSegmentIndex > numberOfSegments - 1) {
|
||||
newSelectedSegmentIndex = 1;
|
||||
} else if (newSelectedSegmentIndex === 0) {
|
||||
newSelectedSegmentIndex = numberOfSegments - 1;
|
||||
}
|
||||
|
||||
segmentationService.jumpToSegmentCenter(segmentationId, newSelectedSegmentIndex, toolGroupId);
|
||||
setSelectedSegment(newSelectedSegmentIndex);
|
||||
utils.handleSegmentChange({
|
||||
direction,
|
||||
segDisplaySet: segDisplaySet,
|
||||
viewportId,
|
||||
selectedSegmentObjectIndex,
|
||||
segmentationService,
|
||||
});
|
||||
},
|
||||
[selectedSegment]
|
||||
[selectedSegmentObjectIndex]
|
||||
);
|
||||
|
||||
const hydrateSEG = useCallback(() => {
|
||||
// update the previously stored segmentationPresentation with the new viewportId
|
||||
// presentation so that when we put the referencedDisplaySet back in the viewport
|
||||
// it will have the correct segmentation representation hydrated
|
||||
commandsManager.runCommand('updateStoredSegmentationPresentation', {
|
||||
displaySet: segDisplaySet,
|
||||
type: SegmentationRepresentations.Labelmap,
|
||||
});
|
||||
|
||||
// update the previously stored positionPresentation with the new viewportId
|
||||
// presentation so that when we put the referencedDisplaySet back in the viewport
|
||||
// it will be in the correct position zoom and pan
|
||||
commandsManager.runCommand('updateStoredPositionPresentation', {
|
||||
viewportId,
|
||||
displaySetInstanceUID: referencedDisplaySet.displaySetInstanceUID,
|
||||
});
|
||||
|
||||
commandsManager.runCommand('loadSegmentationDisplaySetsForViewport', {
|
||||
viewportId,
|
||||
displaySetInstanceUIDs: [referencedDisplaySet.displaySetInstanceUID],
|
||||
});
|
||||
}, [commandsManager, viewportId, referencedDisplaySet, segDisplaySet]);
|
||||
|
||||
useEffect(() => {
|
||||
if (segIsLoading) {
|
||||
return;
|
||||
@@ -155,21 +176,35 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
viewportId,
|
||||
segDisplaySet,
|
||||
preHydrateCallbacks: [storePresentationState],
|
||||
hydrateSEGDisplaySet,
|
||||
hydrateCallback: hydrateSEG,
|
||||
}).then(isHydrated => {
|
||||
if (isHydrated) {
|
||||
setIsHydrated(true);
|
||||
}
|
||||
});
|
||||
}, [servicesManager, viewportId, segDisplaySet, segIsLoading]);
|
||||
}, [servicesManager, viewportId, segDisplaySet, segIsLoading, hydrateSEG]);
|
||||
|
||||
useEffect(() => {
|
||||
// on new seg display set, remove all segmentations from all viewports
|
||||
segmentationService.clearSegmentationRepresentations(viewportId);
|
||||
|
||||
const { unsubscribe } = segmentationService.subscribe(
|
||||
segmentationService.EVENTS.SEGMENTATION_LOADING_COMPLETE,
|
||||
evt => {
|
||||
if (evt.segDisplaySet.displaySetInstanceUID === segDisplaySet.displaySetInstanceUID) {
|
||||
setSegIsLoading(false);
|
||||
}
|
||||
|
||||
if (segDisplaySet?.firstSegmentedSliceImageId && viewportOptions?.presentationIds) {
|
||||
const { firstSegmentedSliceImageId } = segDisplaySet;
|
||||
const { presentationIds } = viewportOptions;
|
||||
|
||||
setPositionPresentation(presentationIds.positionPresentationId, {
|
||||
viewReference: {
|
||||
referencedImageId: firstSegmentedSliceImageId,
|
||||
},
|
||||
});
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
@@ -223,39 +258,31 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
return;
|
||||
}
|
||||
|
||||
// keep the already stored segmentationPresentation for this viewport in memory
|
||||
// so that we can restore it after hydrating the SEG
|
||||
commandsManager.runCommand('updateStoredSegmentationPresentation', {
|
||||
displaySet: segDisplaySet,
|
||||
type: SegmentationRepresentations.Labelmap,
|
||||
});
|
||||
|
||||
// always start fresh for this viewport since it is special type of viewport
|
||||
// that should only show one segmentation at a time.
|
||||
segmentationService.clearSegmentationRepresentations(viewportId);
|
||||
|
||||
// This creates a custom tool group which has the lifetime of this view
|
||||
// only, and does NOT interfere with currently displayed segmentations.
|
||||
toolGroup = createSEGToolGroupAndAddTools(toolGroupService, customizationService, toolGroupId);
|
||||
|
||||
return () => {
|
||||
// remove the segmentation representations if seg displayset changed
|
||||
segmentationService.removeSegmentationRepresentationFromToolGroup(toolGroupId);
|
||||
// e.g., another seg displayset is dragged into the viewport
|
||||
segmentationService.clearSegmentationRepresentations(viewportId);
|
||||
|
||||
// Only destroy the viewport specific implementation
|
||||
toolGroupService.destroyToolGroup(toolGroupId);
|
||||
};
|
||||
}, []);
|
||||
|
||||
useEffect(() => {
|
||||
setIsHydrated(segDisplaySet.isHydrated);
|
||||
|
||||
return () => {
|
||||
// remove the segmentation representations if seg displayset changed
|
||||
segmentationService.removeSegmentationRepresentationFromToolGroup(toolGroupId);
|
||||
referencedDisplaySetRef.current = null;
|
||||
};
|
||||
}, [segDisplaySet]);
|
||||
|
||||
const hydrateSEGDisplaySet = useCallback(
|
||||
({ segDisplaySet, viewportId }) => {
|
||||
commandsManager.runCommand('loadSegmentationDisplaySetsForViewport', {
|
||||
displaySets: [segDisplaySet],
|
||||
viewportId,
|
||||
});
|
||||
},
|
||||
[commandsManager]
|
||||
);
|
||||
|
||||
const onStatusClick = useCallback(async () => {
|
||||
// Before hydrating a SEG and make it added to all viewports in the grid
|
||||
// that share the same frameOfReferenceUID, we need to store the viewport grid
|
||||
@@ -264,16 +291,11 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
// presentation state (w/l and invert) and then opens the SEG. If we don't store
|
||||
// the presentation state, the viewport will be reset to the default presentation
|
||||
storePresentationState();
|
||||
const isHydrated = await hydrateSEGDisplaySet({
|
||||
segDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
|
||||
setIsHydrated(isHydrated);
|
||||
}, [hydrateSEGDisplaySet, segDisplaySet, storePresentationState, viewportId]);
|
||||
hydrateSEG();
|
||||
}, [storePresentationState, hydrateSEG]);
|
||||
|
||||
useEffect(() => {
|
||||
viewportActionCornersService.setComponents([
|
||||
viewportActionCornersService.addComponents([
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportStatusComponent',
|
||||
@@ -292,7 +314,7 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
key="actionArrows"
|
||||
onArrowsClick={onSegmentChange}
|
||||
className={
|
||||
viewportId === activeViewportId ? 'visible' : 'invisible group-hover:visible'
|
||||
viewportId === activeViewportId ? 'visible' : 'invisible group-hover/pane:visible'
|
||||
}
|
||||
></ViewportActionArrows>
|
||||
),
|
||||
@@ -332,18 +354,6 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
});
|
||||
}
|
||||
|
||||
const {
|
||||
PatientID,
|
||||
PatientName,
|
||||
PatientSex,
|
||||
PatientAge,
|
||||
SliceThickness,
|
||||
ManufacturerModelName,
|
||||
StudyDate,
|
||||
SeriesDescription,
|
||||
SpacingBetweenSlices,
|
||||
} = referencedDisplaySetRef.current.metadata;
|
||||
|
||||
return (
|
||||
<>
|
||||
<div className="relative flex h-full w-full flex-row overflow-hidden">
|
||||
@@ -362,13 +372,6 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
);
|
||||
}
|
||||
|
||||
OHIFCornerstoneSEGViewport.propTypes = {
|
||||
displaySets: PropTypes.arrayOf(PropTypes.object),
|
||||
viewportId: PropTypes.string.isRequired,
|
||||
dataSource: PropTypes.object,
|
||||
children: PropTypes.node,
|
||||
};
|
||||
|
||||
function _getReferencedDisplaySetMetadata(referencedDisplaySet, segDisplaySet) {
|
||||
const { SharedFunctionalGroupsSequence } = segDisplaySet.instance;
|
||||
|
||||
|
||||
@@ -1,6 +1,7 @@
|
||||
import React from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { Icon, Tooltip } from '@ohif/ui';
|
||||
import { ViewportActionButton } from '@ohif/ui-next';
|
||||
import { Icons, Tooltip, TooltipTrigger, TooltipContent } from '@ohif/ui-next';
|
||||
|
||||
export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
let ToolTipMessage = null;
|
||||
@@ -8,18 +9,16 @@ export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
|
||||
switch (isHydrated) {
|
||||
case true:
|
||||
StatusIcon = () => <Icon name="status-alert" />;
|
||||
|
||||
StatusIcon = () => <Icons.ByName name="status-alert" />;
|
||||
ToolTipMessage = () => <div>This Segmentation is loaded in the segmentation panel</div>;
|
||||
break;
|
||||
case false:
|
||||
StatusIcon = () => (
|
||||
<Icon
|
||||
className="text-aqua-pale"
|
||||
<Icons.ByName
|
||||
className="text-muted-foreground h-4 w-4"
|
||||
name="status-untracked"
|
||||
/>
|
||||
);
|
||||
|
||||
ToolTipMessage = () => <div>Click LOAD to load segmentation.</div>;
|
||||
}
|
||||
|
||||
@@ -34,13 +33,7 @@ export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
<span className="ml-1">SEG</span>
|
||||
</div>
|
||||
{!isHydrated && (
|
||||
<div
|
||||
className="bg-primary-main hover:bg-primary-light ml-1 cursor-pointer rounded px-1.5 hover:text-black"
|
||||
// Using onMouseUp here because onClick is not working when the viewport is not active and is styled with pointer-events:none
|
||||
onMouseUp={onStatusClick}
|
||||
>
|
||||
{loadStr}
|
||||
</div>
|
||||
<ViewportActionButton onInteraction={onStatusClick}>{loadStr}</ViewportActionButton>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
@@ -49,11 +42,15 @@ export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
return (
|
||||
<>
|
||||
{ToolTipMessage && (
|
||||
<Tooltip
|
||||
content={<ToolTipMessage />}
|
||||
position="bottom-left"
|
||||
>
|
||||
<StatusArea />
|
||||
<Tooltip>
|
||||
<TooltipTrigger asChild>
|
||||
<span>
|
||||
<StatusArea />
|
||||
</span>
|
||||
</TooltipTrigger>
|
||||
<TooltipContent side="bottom">
|
||||
<ToolTipMessage />
|
||||
</TooltipContent>
|
||||
</Tooltip>
|
||||
)}
|
||||
{!ToolTipMessage && <StatusArea />}
|
||||
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-sr",
|
||||
"version": "3.9.0-beta.102",
|
||||
"version": "3.10.2",
|
||||
"description": "OHIF extension for an SR Cornerstone Viewport",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -34,10 +34,10 @@
|
||||
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.9.0-beta.102",
|
||||
"@ohif/extension-cornerstone": "3.9.0-beta.102",
|
||||
"@ohif/extension-measurement-tracking": "3.9.0-beta.102",
|
||||
"@ohif/ui": "3.9.0-beta.102",
|
||||
"@ohif/core": "3.10.2",
|
||||
"@ohif/extension-cornerstone": "3.10.2",
|
||||
"@ohif/extension-measurement-tracking": "3.10.2",
|
||||
"@ohif/ui": "3.10.2",
|
||||
"dcmjs": "*",
|
||||
"dicom-parser": "^1.8.9",
|
||||
"hammerjs": "^2.0.8",
|
||||
@@ -46,9 +46,9 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^1.86.0",
|
||||
"@cornerstonejs/core": "^1.86.0",
|
||||
"@cornerstonejs/tools": "^1.86.0",
|
||||
"@cornerstonejs/adapters": "^3.11.6",
|
||||
"@cornerstonejs/core": "^3.11.6",
|
||||
"@cornerstonejs/tools": "^3.11.6",
|
||||
"classnames": "^2.3.2"
|
||||
}
|
||||
}
|
||||
@@ -5,19 +5,28 @@ import dcmjs from 'dcmjs';
|
||||
import { adaptersSR } from '@cornerstonejs/adapters';
|
||||
|
||||
import getFilteredCornerstoneToolState from './utils/getFilteredCornerstoneToolState';
|
||||
import hydrateStructuredReport from './utils/hydrateStructuredReport';
|
||||
|
||||
const { MeasurementReport } = adaptersSR.Cornerstone3D;
|
||||
const { log } = OHIF;
|
||||
|
||||
interface Options {
|
||||
SeriesDescription?: string;
|
||||
SeriesInstanceUID?: string;
|
||||
SeriesNumber?: number;
|
||||
InstanceNumber?: number;
|
||||
SeriesDate?: string;
|
||||
SeriesTime?: string;
|
||||
}
|
||||
|
||||
/**
|
||||
*
|
||||
* @param measurementData An array of measurements from the measurements service
|
||||
* that you wish to serialize.
|
||||
* @param additionalFindingTypes toolTypes that should be stored with labels as Findings
|
||||
* @param options Naturalized DICOM JSON headers to merge into the displaySet.
|
||||
*
|
||||
*/
|
||||
const _generateReport = (measurementData, additionalFindingTypes, options = {}) => {
|
||||
const _generateReport = (measurementData, additionalFindingTypes, options: Options = {}) => {
|
||||
const filteredToolState = getFilteredCornerstoneToolState(
|
||||
measurementData,
|
||||
additionalFindingTypes
|
||||
@@ -37,13 +46,37 @@ const _generateReport = (measurementData, additionalFindingTypes, options = {})
|
||||
if (typeof dataset.SpecificCharacterSet === 'undefined') {
|
||||
dataset.SpecificCharacterSet = 'ISO_IR 192';
|
||||
}
|
||||
|
||||
dataset.InstanceNumber = options.InstanceNumber ?? 1;
|
||||
|
||||
return dataset;
|
||||
};
|
||||
|
||||
const commandsModule = (props: withAppTypes) => {
|
||||
const { servicesManager } = props;
|
||||
const { customizationService } = servicesManager.services;
|
||||
const { servicesManager, extensionManager, commandsManager } = props;
|
||||
const { customizationService, viewportGridService, displaySetService } = servicesManager.services;
|
||||
|
||||
const actions = {
|
||||
changeColorMeasurement: ({ uid }) => {
|
||||
// When this gets supported, it probably belongs in cornerstone, not sr
|
||||
throw new Error('Unsupported operation: changeColorMeasurement');
|
||||
// const { color } = measurementService.getMeasurement(uid);
|
||||
// const rgbaColor = {
|
||||
// r: color[0],
|
||||
// g: color[1],
|
||||
// b: color[2],
|
||||
// a: color[3] / 255.0,
|
||||
// };
|
||||
// colorPickerDialog(uiDialogService, rgbaColor, (newRgbaColor, actionId) => {
|
||||
// if (actionId === 'cancel') {
|
||||
// return;
|
||||
// }
|
||||
|
||||
// const color = [newRgbaColor.r, newRgbaColor.g, newRgbaColor.b, newRgbaColor.a * 255.0];
|
||||
// segmentationService.setSegmentColor(viewportId, segmentationId, segmentIndex, color);
|
||||
// });
|
||||
},
|
||||
|
||||
/**
|
||||
*
|
||||
* @param measurementData An array of measurements from the measurements service
|
||||
@@ -53,7 +86,7 @@ const commandsModule = (props: withAppTypes) => {
|
||||
* that you wish to serialize.
|
||||
*/
|
||||
downloadReport: ({ measurementData, additionalFindingTypes, options = {} }) => {
|
||||
const srDataset = actions.generateReport(measurementData, additionalFindingTypes, options);
|
||||
const srDataset = _generateReport(measurementData, additionalFindingTypes, options);
|
||||
const reportBlob = dcmjs.data.datasetToBlob(srDataset);
|
||||
|
||||
//Create a URL for the binary.
|
||||
@@ -97,12 +130,11 @@ const commandsModule = (props: withAppTypes) => {
|
||||
throw new Error('Invalid report, no content');
|
||||
}
|
||||
|
||||
const onBeforeDicomStore =
|
||||
customizationService.getModeCustomization('onBeforeDicomStore')?.value;
|
||||
const onBeforeDicomStore = customizationService.getCustomization('onBeforeDicomStore');
|
||||
|
||||
let dicomDict;
|
||||
if (typeof onBeforeDicomStore === 'function') {
|
||||
dicomDict = onBeforeDicomStore({ measurementData, naturalizedReport });
|
||||
dicomDict = onBeforeDicomStore({ dicomDict, measurementData, naturalizedReport });
|
||||
}
|
||||
|
||||
await dataSource.store.dicom(naturalizedReport, null, dicomDict);
|
||||
@@ -123,6 +155,29 @@ const commandsModule = (props: withAppTypes) => {
|
||||
throw new Error(error.message || 'Error while saving the measurements.');
|
||||
}
|
||||
},
|
||||
|
||||
/**
|
||||
* Loads measurements by hydrating and loading the SR for the given display set instance UID
|
||||
* and displays it in the active viewport.
|
||||
*/
|
||||
loadSRMeasurements: ({ displaySetInstanceUID }) => {
|
||||
const { SeriesInstanceUIDs } = hydrateStructuredReport(
|
||||
{ servicesManager, extensionManager, commandsManager },
|
||||
displaySetInstanceUID
|
||||
);
|
||||
|
||||
const displaySets = displaySetService.getDisplaySetsForSeries(SeriesInstanceUIDs[0]);
|
||||
if (displaySets.length) {
|
||||
commandsManager.run('setDisplaySetsForViewports', {
|
||||
viewportsToUpdate: [
|
||||
{
|
||||
viewportId: viewportGridService.getActiveViewportId(),
|
||||
displaySetInstanceUIDs: [displaySets[0].displaySetInstanceUID],
|
||||
},
|
||||
],
|
||||
});
|
||||
}
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
@@ -132,6 +187,9 @@ const commandsModule = (props: withAppTypes) => {
|
||||
storeMeasurements: {
|
||||
commandFn: actions.storeMeasurements,
|
||||
},
|
||||
loadSRMeasurements: {
|
||||
commandFn: actions.loadSRMeasurements,
|
||||
},
|
||||
};
|
||||
|
||||
return {
|
||||
|
||||
+90
-112
@@ -1,14 +1,15 @@
|
||||
import PropTypes from 'prop-types';
|
||||
import React, { useCallback, useContext, useEffect, useState } from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { ExtensionManager } from '@ohif/core';
|
||||
import { ExtensionManager, useToolbar } from '@ohif/core';
|
||||
|
||||
import { setTrackingUniqueIdentifiersForElement } from '../tools/modules/dicomSRModule';
|
||||
|
||||
import { Icon, Tooltip, useViewportGrid, ViewportActionArrows } from '@ohif/ui';
|
||||
import hydrateStructuredReport from '../utils/hydrateStructuredReport';
|
||||
import { useAppConfig } from '@state';
|
||||
import { ViewportActionArrows } from '@ohif/ui-next';
|
||||
import createReferencedImageDisplaySet from '../utils/createReferencedImageDisplaySet';
|
||||
import { usePositionPresentationStore } from '@ohif/extension-cornerstone';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import { Icons, Tooltip, TooltipTrigger, TooltipContent } from '@ohif/ui-next';
|
||||
|
||||
const MEASUREMENT_TRACKING_EXTENSION_ID = '@ohif/extension-measurement-tracking';
|
||||
|
||||
@@ -18,14 +19,7 @@ function OHIFCornerstoneSRMeasurementViewport(props: withAppTypes) {
|
||||
const { children, dataSource, displaySets, viewportOptions, servicesManager, extensionManager } =
|
||||
props;
|
||||
|
||||
const [appConfig] = useAppConfig();
|
||||
|
||||
const {
|
||||
displaySetService,
|
||||
cornerstoneViewportService,
|
||||
measurementService,
|
||||
viewportActionCornersService,
|
||||
} = servicesManager.services;
|
||||
const { displaySetService, viewportActionCornersService } = servicesManager.services;
|
||||
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
|
||||
@@ -36,6 +30,8 @@ function OHIFCornerstoneSRMeasurementViewport(props: withAppTypes) {
|
||||
|
||||
const srDisplaySet = displaySets[0];
|
||||
|
||||
const { setPositionPresentation } = usePositionPresentationStore();
|
||||
|
||||
const [viewportGrid, viewportGridService] = useViewportGrid();
|
||||
const [measurementSelected, setMeasurementSelected] = useState(0);
|
||||
const [measurementCount, setMeasurementCount] = useState(1);
|
||||
@@ -48,7 +44,6 @@ function OHIFCornerstoneSRMeasurementViewport(props: withAppTypes) {
|
||||
|
||||
// Optional hook into tracking extension, if present.
|
||||
let trackedMeasurements;
|
||||
let sendTrackedMeasurementsEvent;
|
||||
|
||||
const hasMeasurementTrackingExtension = extensionManager.registeredExtensionIds.includes(
|
||||
MEASUREMENT_TRACKING_EXTENSION_ID
|
||||
@@ -61,29 +56,13 @@ function OHIFCornerstoneSRMeasurementViewport(props: withAppTypes) {
|
||||
|
||||
const tracked = useContext(contextModule.context);
|
||||
trackedMeasurements = tracked?.[0];
|
||||
sendTrackedMeasurementsEvent = tracked?.[1];
|
||||
}
|
||||
if (!sendTrackedMeasurementsEvent) {
|
||||
// if no panels from measurement-tracking extension is used, this code will run
|
||||
trackedMeasurements = null;
|
||||
sendTrackedMeasurementsEvent = (eventName, { displaySetInstanceUID }) => {
|
||||
measurementService.clearMeasurements();
|
||||
const { SeriesInstanceUIDs } = hydrateStructuredReport(
|
||||
{ servicesManager, extensionManager, appConfig },
|
||||
displaySetInstanceUID
|
||||
);
|
||||
const displaySets = displaySetService.getDisplaySetsForSeries(SeriesInstanceUIDs[0]);
|
||||
if (displaySets.length) {
|
||||
viewportGridService.setDisplaySetsForViewports([
|
||||
{
|
||||
viewportId: activeViewportId,
|
||||
displaySetInstanceUIDs: [displaySets[0].displaySetInstanceUID],
|
||||
},
|
||||
]);
|
||||
}
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
* Todo: what is this, not sure what it does regarding the react aspect,
|
||||
* it is updating a local variable? which is not state.
|
||||
*/
|
||||
const [isLocked, setIsLocked] = useState(trackedMeasurements?.context?.trackedSeries?.length > 0);
|
||||
/**
|
||||
* Store the tracking identifiers per viewport in order to be able to
|
||||
* show the SR measurements on the referenced image on the correct viewport,
|
||||
@@ -140,33 +119,17 @@ function OHIFCornerstoneSRMeasurementViewport(props: withAppTypes) {
|
||||
}
|
||||
|
||||
setMeasurementSelected(newMeasurementSelected);
|
||||
|
||||
setActiveImageDisplaySetData(referencedDisplaySet);
|
||||
setReferencedDisplaySetMetadata(referencedDisplaySetMetadata);
|
||||
|
||||
if (
|
||||
referencedDisplaySet.displaySetInstanceUID ===
|
||||
activeImageDisplaySetData?.displaySetInstanceUID
|
||||
) {
|
||||
const { measurements } = srDisplaySet;
|
||||
|
||||
// it means that we have a new referenced display set, and the
|
||||
// imageIdIndex will handle it by updating the viewport, but if they
|
||||
// are the same we just need to use measurementService to jump to the
|
||||
// new measurement
|
||||
const csViewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
|
||||
if (!csViewport) {
|
||||
return;
|
||||
}
|
||||
|
||||
const imageIds = csViewport.getImageIds();
|
||||
|
||||
const imageIdIndex = imageIds.indexOf(measurements[newMeasurementSelected].imageId);
|
||||
|
||||
if (imageIdIndex !== -1) {
|
||||
csViewport.setImageIdIndex(imageIdIndex);
|
||||
}
|
||||
}
|
||||
const { presentationIds } = viewportOptions;
|
||||
const measurement = srDisplaySet.measurements[newMeasurementSelected];
|
||||
setPositionPresentation(presentationIds.positionPresentationId, {
|
||||
viewReference: {
|
||||
referencedImageId: measurement.imageId,
|
||||
},
|
||||
});
|
||||
});
|
||||
},
|
||||
[dataSource, srDisplaySet, activeImageDisplaySetData, viewportId]
|
||||
@@ -188,10 +151,6 @@ function OHIFCornerstoneSRMeasurementViewport(props: withAppTypes) {
|
||||
return null;
|
||||
}
|
||||
|
||||
const initialImageIndex = activeImageDisplaySetData.images.findIndex(
|
||||
image => image.imageId === measurement.imageId
|
||||
);
|
||||
|
||||
return (
|
||||
<Component
|
||||
{...props}
|
||||
@@ -216,7 +175,6 @@ function OHIFCornerstoneSRMeasurementViewport(props: withAppTypes) {
|
||||
props.onElementEnabled?.(evt);
|
||||
onElementEnabled(evt);
|
||||
}}
|
||||
initialImageIndex={initialImageIndex}
|
||||
isJumpToMeasurementDisabled={true}
|
||||
></Component>
|
||||
);
|
||||
@@ -297,17 +255,12 @@ function OHIFCornerstoneSRMeasurementViewport(props: withAppTypes) {
|
||||
updateSR();
|
||||
}, [measurementSelected, element, setTrackingIdentifiers, srDisplaySet]);
|
||||
|
||||
/**
|
||||
* Todo: what is this, not sure what it does regarding the react aspect,
|
||||
* it is updating a local variable? which is not state.
|
||||
*/
|
||||
const [isLocked, setIsLocked] = useState(trackedMeasurements?.context?.trackedSeries?.length > 0);
|
||||
useEffect(() => {
|
||||
setIsLocked(trackedMeasurements?.context?.trackedSeries?.length > 0);
|
||||
}, [trackedMeasurements]);
|
||||
|
||||
useEffect(() => {
|
||||
viewportActionCornersService.setComponents([
|
||||
viewportActionCornersService.addComponents([
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportStatusComponent',
|
||||
@@ -316,8 +269,8 @@ function OHIFCornerstoneSRMeasurementViewport(props: withAppTypes) {
|
||||
viewportId,
|
||||
isRehydratable: srDisplaySet.isRehydratable,
|
||||
isLocked,
|
||||
sendTrackedMeasurementsEvent,
|
||||
t,
|
||||
servicesManager,
|
||||
}),
|
||||
indexPriority: -100,
|
||||
location: viewportActionCornersService.LOCATIONS.topLeft,
|
||||
@@ -336,15 +289,7 @@ function OHIFCornerstoneSRMeasurementViewport(props: withAppTypes) {
|
||||
location: viewportActionCornersService.LOCATIONS.topRight,
|
||||
},
|
||||
]);
|
||||
}, [
|
||||
isLocked,
|
||||
onMeasurementChange,
|
||||
sendTrackedMeasurementsEvent,
|
||||
srDisplaySet,
|
||||
t,
|
||||
viewportActionCornersService,
|
||||
viewportId,
|
||||
]);
|
||||
}, [isLocked, onMeasurementChange, srDisplaySet, t, viewportActionCornersService, viewportId]);
|
||||
|
||||
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
let childrenWithProps = null;
|
||||
@@ -432,16 +377,9 @@ function _getStatusComponent({
|
||||
viewportId,
|
||||
isRehydratable,
|
||||
isLocked,
|
||||
sendTrackedMeasurementsEvent,
|
||||
t,
|
||||
servicesManager,
|
||||
}) {
|
||||
const handleMouseUp = () => {
|
||||
sendTrackedMeasurementsEvent('HYDRATE_SR', {
|
||||
displaySetInstanceUID: srDisplaySet.displaySetInstanceUID,
|
||||
viewportId,
|
||||
});
|
||||
};
|
||||
|
||||
const loadStr = t('LOAD');
|
||||
|
||||
// 1 - Incompatible
|
||||
@@ -453,7 +391,12 @@ function _getStatusComponent({
|
||||
|
||||
switch (state) {
|
||||
case 1:
|
||||
StatusIcon = () => <Icon name="status-alert" />;
|
||||
StatusIcon = () => (
|
||||
<Icons.ByName
|
||||
name="status-alert"
|
||||
className="h-4 w-4"
|
||||
/>
|
||||
);
|
||||
|
||||
ToolTipMessage = () => (
|
||||
<div>
|
||||
@@ -464,7 +407,12 @@ function _getStatusComponent({
|
||||
);
|
||||
break;
|
||||
case 2:
|
||||
StatusIcon = () => <Icon name="status-locked" />;
|
||||
StatusIcon = () => (
|
||||
<Icons.ByName
|
||||
name="status-locked"
|
||||
className="h-4 w-4"
|
||||
/>
|
||||
);
|
||||
|
||||
ToolTipMessage = () => (
|
||||
<div>
|
||||
@@ -478,8 +426,8 @@ function _getStatusComponent({
|
||||
break;
|
||||
case 3:
|
||||
StatusIcon = () => (
|
||||
<Icon
|
||||
className="text-aqua-pale"
|
||||
<Icons.ByName
|
||||
className="text-muted-foreground h-4 w-4"
|
||||
name="status-untracked"
|
||||
/>
|
||||
);
|
||||
@@ -487,32 +435,62 @@ function _getStatusComponent({
|
||||
ToolTipMessage = () => <div>{`Click ${loadStr} to restore measurements.`}</div>;
|
||||
}
|
||||
|
||||
const StatusArea = () => (
|
||||
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
|
||||
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
|
||||
<StatusIcon />
|
||||
<span className="ml-1">SR</span>
|
||||
</div>
|
||||
{state === 3 && (
|
||||
<div
|
||||
className="bg-primary-main hover:bg-primary-light ml-1 cursor-pointer rounded px-1.5 hover:text-black"
|
||||
// Using onMouseUp here because onClick is not working when the viewport is not active and is styled with pointer-events:none
|
||||
onMouseUp={handleMouseUp}
|
||||
>
|
||||
{loadStr}
|
||||
const StatusArea = () => {
|
||||
const { toolbarButtons: loadSRMeasurementsButtons, onInteraction } = useToolbar({
|
||||
servicesManager,
|
||||
buttonSection: 'loadSRMeasurements',
|
||||
});
|
||||
|
||||
const commandOptions = {
|
||||
displaySetInstanceUID: srDisplaySet.displaySetInstanceUID,
|
||||
viewportId,
|
||||
};
|
||||
|
||||
return (
|
||||
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
|
||||
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
|
||||
<StatusIcon className="h-4 w-4" />
|
||||
<span className="ml-1">SR</span>
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
{state === 3 && (
|
||||
<>
|
||||
{loadSRMeasurementsButtons.map(toolDef => {
|
||||
if (!toolDef) {
|
||||
return null;
|
||||
}
|
||||
const { id, Component, componentProps } = toolDef;
|
||||
const tool = (
|
||||
<Component
|
||||
key={id}
|
||||
id={id}
|
||||
onInteraction={args => onInteraction({ ...args, ...commandOptions })}
|
||||
{...componentProps}
|
||||
/>
|
||||
);
|
||||
|
||||
return <div key={id}>{tool}</div>;
|
||||
})}
|
||||
</>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
{ToolTipMessage && (
|
||||
<Tooltip
|
||||
content={<ToolTipMessage />}
|
||||
position="bottom-left"
|
||||
>
|
||||
<StatusArea />
|
||||
<Tooltip>
|
||||
<TooltipTrigger asChild>
|
||||
<span>
|
||||
<StatusArea />
|
||||
</span>
|
||||
</TooltipTrigger>
|
||||
<TooltipContent
|
||||
side="bottom"
|
||||
align="start"
|
||||
>
|
||||
<ToolTipMessage />
|
||||
</TooltipContent>
|
||||
</Tooltip>
|
||||
)}
|
||||
{!ToolTipMessage && <StatusArea />}
|
||||
|
||||
@@ -90,6 +90,7 @@ function _getDisplaySetsFromSeries(
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
ConceptNameCodeSequence,
|
||||
SOPClassUID,
|
||||
} = instance;
|
||||
@@ -106,6 +107,7 @@ function _getDisplaySetsFromSeries(
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
@@ -263,9 +265,9 @@ function _checkIfCanAddMeasurementsToDisplaySet(
|
||||
for (let j = unloadedMeasurements.length - 1; j >= 0; j--) {
|
||||
let measurement = unloadedMeasurements[j];
|
||||
|
||||
const onBeforeSRAddMeasurement = customizationService.getModeCustomization(
|
||||
const onBeforeSRAddMeasurement = customizationService.getCustomization(
|
||||
'onBeforeSRAddMeasurement'
|
||||
)?.value;
|
||||
);
|
||||
|
||||
if (typeof onBeforeSRAddMeasurement === 'function') {
|
||||
measurement = onBeforeSRAddMeasurement({
|
||||
|
||||
@@ -30,6 +30,7 @@ const dicomSRExtension = {
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id,
|
||||
|
||||
onModeEnter,
|
||||
|
||||
preRegistration,
|
||||
|
||||
@@ -12,7 +12,7 @@ import {
|
||||
utilities as csToolsUtils,
|
||||
} from '@cornerstonejs/tools';
|
||||
import { Types, MeasurementService } from '@ohif/core';
|
||||
import { StackViewport } from '@cornerstonejs/core';
|
||||
import { StackViewport, utilities as csUtils } from '@cornerstonejs/core';
|
||||
import { Enums as CSExtensionEnums } from '@ohif/extension-cornerstone';
|
||||
import DICOMSRDisplayTool from './tools/DICOMSRDisplayTool';
|
||||
import SCOORD3DPointTool from './tools/SCOORD3DPointTool';
|
||||
@@ -77,28 +77,4 @@ export default function init({
|
||||
SRRectangleROI: dashedLine,
|
||||
global: {},
|
||||
});
|
||||
|
||||
measurementService.subscribe(
|
||||
MeasurementService.EVENTS.JUMP_TO_MEASUREMENT_LAYOUT,
|
||||
({ viewportId, measurement, isConsumed }) => {
|
||||
if (isConsumed) {
|
||||
return;
|
||||
}
|
||||
try {
|
||||
const currentViewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
const { viewPlaneNormal } = currentViewport.getCamera();
|
||||
const referencedImageId = csToolsUtils.getClosestImageIdForStackViewport(
|
||||
currentViewport as StackViewport,
|
||||
measurement.points[0],
|
||||
viewPlaneNormal
|
||||
);
|
||||
const imageIndex = (currentViewport as StackViewport)
|
||||
.getImageIds()
|
||||
.indexOf(referencedImageId);
|
||||
csToolsUtils.jumpToSlice(currentViewport.element, { imageIndex });
|
||||
} catch (error) {
|
||||
console.warn('Unable to jump to image based on measurement coordinate', error);
|
||||
}
|
||||
}
|
||||
);
|
||||
}
|
||||
@@ -1,15 +0,0 @@
|
||||
import { SOPClassHandlerId, SOPClassHandlerId3D } from './id';
|
||||
|
||||
export default function onModeEnter({ servicesManager }) {
|
||||
const { displaySetService } = servicesManager.services;
|
||||
const displaySetCache = displaySetService.getDisplaySetCache();
|
||||
|
||||
const srDisplaySets = [...displaySetCache.values()].filter(
|
||||
ds => ds.SOPClassHandlerId === SOPClassHandlerId || ds.SOPClassHandlerId === SOPClassHandlerId3D
|
||||
);
|
||||
|
||||
srDisplaySets.forEach(ds => {
|
||||
// New mode route, allow SRs to be hydrated again
|
||||
ds.isHydrated = false;
|
||||
});
|
||||
}
|
||||
@@ -0,0 +1,39 @@
|
||||
import React from 'react';
|
||||
|
||||
import { SOPClassHandlerId, SOPClassHandlerId3D } from './id';
|
||||
import { ViewportActionButton } from '@ohif/ui-next';
|
||||
import i18n from '@ohif/i18n';
|
||||
|
||||
export default function onModeEnter({ servicesManager }) {
|
||||
const { displaySetService, toolbarService } = servicesManager.services;
|
||||
const displaySetCache = displaySetService.getDisplaySetCache();
|
||||
|
||||
const srDisplaySets = [...displaySetCache.values()].filter(
|
||||
ds => ds.SOPClassHandlerId === SOPClassHandlerId || ds.SOPClassHandlerId === SOPClassHandlerId3D
|
||||
);
|
||||
|
||||
srDisplaySets.forEach(ds => {
|
||||
// New mode route, allow SRs to be hydrated again
|
||||
ds.isHydrated = false;
|
||||
});
|
||||
|
||||
toolbarService.addButtons([
|
||||
{
|
||||
// A base/default button for loading measurements. It is added to the toolbar below.
|
||||
// Customizations to this button can be made in the mode or by another extension.
|
||||
// For example, the button label can be changed and/or the command to clear
|
||||
// the measurements can be dropped.
|
||||
id: 'loadSRMeasurements',
|
||||
component: props => (
|
||||
<ViewportActionButton {...props}>{i18n.t('Common:LOAD')}</ViewportActionButton>
|
||||
),
|
||||
props: {
|
||||
commands: ['clearMeasurements', 'loadSRMeasurements'],
|
||||
},
|
||||
},
|
||||
]);
|
||||
|
||||
// The toolbar used in the viewport's status bar. Modes and extensions can further customize
|
||||
// it to optionally add other buttons.
|
||||
toolbarService.createButtonSection('loadSRMeasurements', ['loadSRMeasurements']);
|
||||
}
|
||||
@@ -25,7 +25,7 @@ const contentItemFormatters = {
|
||||
return `${NumericValue} ${CodeValue}`;
|
||||
},
|
||||
PNAME: contentItem => {
|
||||
const personName = contentItem.PersonName?.[0]?.Alphabetic;
|
||||
const personName = contentItem.PersonName?.[0];
|
||||
return personName ? utils.formatPN(personName) : undefined;
|
||||
},
|
||||
DATE: contentItem => {
|
||||
|
||||
@@ -41,15 +41,15 @@ const convertSites = (codingValues, sites) => {
|
||||
*
|
||||
*/
|
||||
export default function hydrateStructuredReport(
|
||||
{ servicesManager, extensionManager, appConfig }: withAppTypes,
|
||||
{ servicesManager, extensionManager, commandsManager }: withAppTypes,
|
||||
displaySetInstanceUID
|
||||
) {
|
||||
const annotationManager = CsAnnotation.state.getAnnotationManager();
|
||||
const disableEditing = appConfig?.disableEditing;
|
||||
const dataSource = extensionManager.getActiveDataSource()[0];
|
||||
const { measurementService, displaySetService, customizationService } = servicesManager.services;
|
||||
|
||||
const codingValues = customizationService.getCustomization('codingValues', {});
|
||||
const codingValues = customizationService.getCustomization('codingValues');
|
||||
const disableEditing = customizationService.getCustomization('panelMeasurement.disableEditing');
|
||||
|
||||
const displaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
|
||||
|
||||
// TODO -> We should define a strict versioning somewhere.
|
||||
@@ -85,7 +85,8 @@ export default function hydrateStructuredReport(
|
||||
}
|
||||
});
|
||||
|
||||
const datasetToUse = _mapLegacyDataSet(instance);
|
||||
// Mapping of legacy datasets is now directly handled by adapters module
|
||||
const datasetToUse = instance;
|
||||
|
||||
// Use dcmjs to generate toolState.
|
||||
let storedMeasurementByAnnotationType = MeasurementReport.generateToolState(
|
||||
@@ -99,8 +100,7 @@ export default function hydrateStructuredReport(
|
||||
metaData
|
||||
);
|
||||
|
||||
const onBeforeSRHydration =
|
||||
customizationService.getModeCustomization('onBeforeSRHydration')?.value;
|
||||
const onBeforeSRHydration = customizationService.getCustomization('onBeforeSRHydration')?.value;
|
||||
|
||||
if (typeof onBeforeSRHydration === 'function') {
|
||||
storedMeasurementByAnnotationType = onBeforeSRHydration({
|
||||
@@ -200,7 +200,11 @@ export default function hydrateStructuredReport(
|
||||
annotation.data.label = getLabelFromDCMJSImportedToolData(toolData);
|
||||
annotation.data.finding = convertCode(codingValues, toolData.finding?.[0]);
|
||||
annotation.data.findingSites = convertSites(codingValues, toolData.findingSites);
|
||||
annotation.data.site = annotation.data.findingSites?.[0];
|
||||
annotation.data.findingSites?.forEach(site => {
|
||||
if (site.type) {
|
||||
annotation.data[site.type] = site;
|
||||
}
|
||||
});
|
||||
|
||||
const matchingMapping = mappings.find(m => m.annotationType === annotationType);
|
||||
|
||||
@@ -212,9 +216,13 @@ export default function hydrateStructuredReport(
|
||||
dataSource
|
||||
);
|
||||
|
||||
commandsManager.runCommand('updateMeasurement', {
|
||||
uid: newAnnotationUID,
|
||||
code: annotation.data.finding,
|
||||
});
|
||||
|
||||
if (disableEditing) {
|
||||
const addedAnnotation = annotationManager.getAnnotation(newAnnotationUID);
|
||||
locking.setAnnotationLocked(addedAnnotation, true);
|
||||
locking.setAnnotationLocked(newAnnotationUID, true);
|
||||
}
|
||||
|
||||
if (!imageIds.includes(imageId)) {
|
||||
@@ -230,62 +238,3 @@ export default function hydrateStructuredReport(
|
||||
SeriesInstanceUIDs,
|
||||
};
|
||||
}
|
||||
|
||||
function _mapLegacyDataSet(dataset) {
|
||||
const REPORT = 'Imaging Measurements';
|
||||
const GROUP = 'Measurement Group';
|
||||
const TRACKING_IDENTIFIER = 'Tracking Identifier';
|
||||
|
||||
// Identify the Imaging Measurements
|
||||
const imagingMeasurementContent = toArray(dataset.ContentSequence).find(
|
||||
codeMeaningEquals(REPORT)
|
||||
);
|
||||
|
||||
// Retrieve the Measurements themselves
|
||||
const measurementGroups = toArray(imagingMeasurementContent.ContentSequence).filter(
|
||||
codeMeaningEquals(GROUP)
|
||||
);
|
||||
|
||||
// For each of the supported measurement types, compute the measurement data
|
||||
const measurementData = {};
|
||||
|
||||
const cornerstoneToolClasses = MeasurementReport.CORNERSTONE_TOOL_CLASSES_BY_UTILITY_TYPE;
|
||||
|
||||
const registeredToolClasses = [];
|
||||
|
||||
Object.keys(cornerstoneToolClasses).forEach(key => {
|
||||
registeredToolClasses.push(cornerstoneToolClasses[key]);
|
||||
measurementData[key] = [];
|
||||
});
|
||||
|
||||
measurementGroups.forEach((measurementGroup, index) => {
|
||||
const measurementGroupContentSequence = toArray(measurementGroup.ContentSequence);
|
||||
|
||||
const TrackingIdentifierGroup = measurementGroupContentSequence.find(
|
||||
contentItem => contentItem.ConceptNameCodeSequence.CodeMeaning === TRACKING_IDENTIFIER
|
||||
);
|
||||
|
||||
const TrackingIdentifier = TrackingIdentifierGroup.TextValue;
|
||||
|
||||
let [cornerstoneTag, toolName] = TrackingIdentifier.split(':');
|
||||
if (supportedLegacyCornerstoneTags.includes(cornerstoneTag)) {
|
||||
cornerstoneTag = CORNERSTONE_3D_TAG;
|
||||
}
|
||||
|
||||
const mappedTrackingIdentifier = `${cornerstoneTag}:${toolName}`;
|
||||
|
||||
TrackingIdentifierGroup.TextValue = mappedTrackingIdentifier;
|
||||
});
|
||||
|
||||
return dataset;
|
||||
}
|
||||
|
||||
const toArray = function (x) {
|
||||
return Array.isArray(x) ? x : [x];
|
||||
};
|
||||
|
||||
const codeMeaningEquals = codeMeaningName => {
|
||||
return contentItem => {
|
||||
return contentItem.ConceptNameCodeSequence.CodeMeaning === codeMeaningName;
|
||||
};
|
||||
};
|
||||
@@ -1,60 +0,0 @@
|
||||
import { adaptersSR } from '@cornerstonejs/adapters';
|
||||
|
||||
const cornerstoneAdapters =
|
||||
adaptersSR.Cornerstone3D.MeasurementReport.CORNERSTONE_TOOL_CLASSES_BY_UTILITY_TYPE;
|
||||
|
||||
const supportedLegacyCornerstoneTags = ['cornerstoneTools@^4.0.0'];
|
||||
const CORNERSTONE_3D_TAG = adaptersSR.Cornerstone3D.CORNERSTONE_3D_TAG;
|
||||
|
||||
/**
|
||||
* Checks if the given `displaySet`can be rehydrated into the `measurementService`.
|
||||
*
|
||||
* @param {object} displaySet The SR `displaySet` to check.
|
||||
* @param {object[]} mappings The CornerstoneTools 4 mappings to the `measurementService`.
|
||||
* @returns {boolean} True if the SR can be rehydrated into the `measurementService`.
|
||||
*/
|
||||
export default function isRehydratable(displaySet, mappings) {
|
||||
if (!mappings || !mappings.length) {
|
||||
return false;
|
||||
}
|
||||
|
||||
const mappingDefinitions = mappings.map(m => m.annotationType);
|
||||
const { measurements } = displaySet;
|
||||
|
||||
const adapterKeys = Object.keys(cornerstoneAdapters).filter(
|
||||
adapterKey =>
|
||||
typeof cornerstoneAdapters[adapterKey].isValidCornerstoneTrackingIdentifier === 'function'
|
||||
);
|
||||
|
||||
const adapters = [];
|
||||
|
||||
adapterKeys.forEach(key => {
|
||||
if (mappingDefinitions.includes(key)) {
|
||||
// Must have both a dcmjs adapter and a measurementService
|
||||
// Definition in order to be a candidate for import.
|
||||
adapters.push(cornerstoneAdapters[key]);
|
||||
}
|
||||
});
|
||||
|
||||
for (let i = 0; i < measurements.length; i++) {
|
||||
const { TrackingIdentifier } = measurements[i] || {};
|
||||
const hydratable = adapters.some(adapter => {
|
||||
let [cornerstoneTag, toolName] = TrackingIdentifier.split(':');
|
||||
if (supportedLegacyCornerstoneTags.includes(cornerstoneTag)) {
|
||||
cornerstoneTag = CORNERSTONE_3D_TAG;
|
||||
}
|
||||
|
||||
const mappedTrackingIdentifier = `${cornerstoneTag}:${toolName}`;
|
||||
|
||||
return adapter.isValidCornerstoneTrackingIdentifier(mappedTrackingIdentifier);
|
||||
});
|
||||
|
||||
if (hydratable) {
|
||||
return true;
|
||||
}
|
||||
console.log('Measurement is not rehydratable', TrackingIdentifier, measurements[i]);
|
||||
}
|
||||
|
||||
console.log('No measurements found which were rehydratable');
|
||||
return false;
|
||||
}
|
||||
@@ -0,0 +1,41 @@
|
||||
import { adaptersSR } from '@cornerstonejs/adapters';
|
||||
|
||||
const { MeasurementReport } = adaptersSR.Cornerstone3D;
|
||||
|
||||
/**
|
||||
* Checks if the given `displaySet`can be rehydrated into the `measurementService`.
|
||||
*
|
||||
* @param {object} displaySet The SR `displaySet` to check.
|
||||
* @param {object[]} mappings The CornerstoneTools 4 mappings to the `measurementService`.
|
||||
* @returns {boolean} True if the SR can be rehydrated into the `measurementService`.
|
||||
*/
|
||||
export default function isRehydratable(displaySet, mappings) {
|
||||
if (!mappings || !mappings.length) {
|
||||
return false;
|
||||
}
|
||||
|
||||
const mappingDefinitions = new Set<string>();
|
||||
for (const m of mappings) {
|
||||
mappingDefinitions.add(m.annotationType);
|
||||
}
|
||||
|
||||
const { measurements } = displaySet;
|
||||
|
||||
for (let i = 0; i < measurements.length; i++) {
|
||||
const { TrackingIdentifier } = measurements[i] || {};
|
||||
if (!TrackingIdentifier) {
|
||||
console.warn('No tracking identifier for measurement ', measurements[i]);
|
||||
continue;
|
||||
}
|
||||
const adapter = MeasurementReport.getAdapterForTrackingIdentifier(TrackingIdentifier);
|
||||
const hydratable = adapter && mappingDefinitions.has(adapter.toolType);
|
||||
|
||||
if (hydratable) {
|
||||
return true;
|
||||
}
|
||||
console.log('Measurement is not rehydratable', TrackingIdentifier, measurements[i]);
|
||||
}
|
||||
|
||||
console.log('No measurements found which were rehydratable');
|
||||
return false;
|
||||
}
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dynamic-volume",
|
||||
"version": "3.9.0-beta.102",
|
||||
"version": "3.10.2",
|
||||
"description": "OHIF extension for 4D volumes data",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -29,11 +29,11 @@
|
||||
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.9.0-beta.102",
|
||||
"@ohif/extension-cornerstone": "3.9.0-beta.102",
|
||||
"@ohif/extension-default": "3.9.0-beta.102",
|
||||
"@ohif/i18n": "3.9.0-beta.102",
|
||||
"@ohif/ui": "3.9.0-beta.102",
|
||||
"@ohif/core": "3.10.2",
|
||||
"@ohif/extension-cornerstone": "3.10.2",
|
||||
"@ohif/extension-default": "3.10.2",
|
||||
"@ohif/i18n": "3.10.2",
|
||||
"@ohif/ui": "3.10.2",
|
||||
"dcmjs": "*",
|
||||
"dicom-parser": "^1.8.21",
|
||||
"hammerjs": "^2.0.8",
|
||||
@@ -42,9 +42,8 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/core": "^1.86.0",
|
||||
"@cornerstonejs/streaming-image-volume-loader": "^1.82.4",
|
||||
"@cornerstonejs/tools": "^1.86.0",
|
||||
"@cornerstonejs/core": "^3.11.6",
|
||||
"@cornerstonejs/tools": "^3.11.6",
|
||||
"classnames": "^2.3.2"
|
||||
}
|
||||
}
|
||||
+21
-25
@@ -110,7 +110,12 @@ function _getTimePointsData(volume) {
|
||||
return { timePoints, timePointsUnit };
|
||||
}
|
||||
|
||||
function _getSegmentationData(segmentation, volumesTimePointsCache, displaySetService) {
|
||||
function _getSegmentationData(
|
||||
segmentation,
|
||||
volumesTimePointsCache,
|
||||
{ servicesManager }: { servicesManager: AppTypes.ServicesManager }
|
||||
) {
|
||||
const { displaySetService, segmentationService, viewportGridService } = servicesManager.services;
|
||||
const displaySets = displaySetService.getActiveDisplaySets();
|
||||
|
||||
const dynamic4DDisplaySet = displaySets.find(displaySet => {
|
||||
@@ -145,8 +150,11 @@ function _getSegmentationData(segmentation, volumesTimePointsCache, displaySetSe
|
||||
referencedDynamicVolume.imageIds[0]
|
||||
);
|
||||
|
||||
const segmentationVolume = segmentationService.getLabelmapVolume(segmentation.segmentationId);
|
||||
const maskVolumeId = segmentationVolume?.volumeId;
|
||||
|
||||
const [timeData, _] = csToolsUtils.dynamicVolume.getDataInTime(referencedDynamicVolume, {
|
||||
maskVolumeId: segmentation.id,
|
||||
maskVolumeId,
|
||||
}) as number[][];
|
||||
|
||||
const pixelCount = timeData.length;
|
||||
@@ -155,27 +163,15 @@ function _getSegmentationData(segmentation, volumesTimePointsCache, displaySetSe
|
||||
return [];
|
||||
}
|
||||
|
||||
// since we only use one segmentation representation per segmentationId
|
||||
// it is fine to pick the first one
|
||||
const segmentationRepresentations = csTools.segmentation.state.getSegmentationIdRepresentations(
|
||||
segmentation.id
|
||||
);
|
||||
|
||||
const segmentationRepresentationUID =
|
||||
segmentationRepresentations[0].segmentationRepresentationUID;
|
||||
|
||||
const toolGroupId = csTools.segmentation.state.getToolGroupIdFromSegmentationRepresentationUID(
|
||||
segmentationRepresentationUID
|
||||
);
|
||||
|
||||
// Todo: this is useless we should be able to grab color with just segRepUID and segmentIndex
|
||||
const color = csTools.segmentation.config.color.getColorForSegmentIndex(
|
||||
toolGroupId,
|
||||
segmentationRepresentationUID,
|
||||
1 // segmentIndex
|
||||
);
|
||||
// const color = csTools.segmentation.config.color.getSegmentIndexColor(
|
||||
// segmentationRepresentationUID,
|
||||
// 1 // segmentIndex
|
||||
// );
|
||||
const viewportId = viewportGridService.getActiveViewportId();
|
||||
const color = segmentationService.getSegmentColor(viewportId, segmentation.segmentationId, 1);
|
||||
|
||||
const hexColor = cs.utilities.color.rgbToHex(...color);
|
||||
const hexColor = cs.utilities.color.rgbToHex(color[0], color[1], color[2]);
|
||||
let timePointsData = volumesTimePointsCache.get(referencedDynamicVolume);
|
||||
|
||||
if (!timePointsData) {
|
||||
@@ -219,14 +215,14 @@ function _getSegmentationData(segmentation, volumesTimePointsCache, displaySetSe
|
||||
};
|
||||
}
|
||||
|
||||
function _getInstanceFromSegmentations(segmentations, displaySetService) {
|
||||
function _getInstanceFromSegmentations(segmentations, { servicesManager }) {
|
||||
if (!segmentations.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
const volumesTimePointsCache = new WeakMap();
|
||||
const segmentationsData = segmentations.map(segmentation =>
|
||||
_getSegmentationData(segmentation, volumesTimePointsCache, displaySetService)
|
||||
_getSegmentationData(segmentation, volumesTimePointsCache, { servicesManager })
|
||||
);
|
||||
|
||||
const { date: seriesDate, time: seriesTime } = _getDateTimeStr();
|
||||
@@ -266,10 +262,10 @@ function _getInstanceFromSegmentations(segmentations, displaySetService) {
|
||||
}
|
||||
|
||||
function updateSegmentationsChartDisplaySet({ servicesManager }: withAppTypes): void {
|
||||
const { segmentationService, displaySetService } = servicesManager.services;
|
||||
const { segmentationService } = servicesManager.services;
|
||||
const segmentations = segmentationService.getSegmentations();
|
||||
const { seriesMetadata, instance } =
|
||||
_getInstanceFromSegmentations(segmentations, displaySetService) ?? {};
|
||||
_getInstanceFromSegmentations(segmentations, { servicesManager }) ?? {};
|
||||
|
||||
if (seriesMetadata && instance) {
|
||||
// An event is triggered after adding the instance and the displaySet is created
|
||||
|
||||
@@ -84,11 +84,11 @@ const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
const stdDeviation = Math.sqrt(variance);
|
||||
return stdDeviation;
|
||||
}
|
||||
|
||||
// Iterate through each segmentation to get the timeData and ijkCoords
|
||||
segmentations.forEach((segmentation, segmentationIndex) => {
|
||||
segmentations.forEach(segmentation => {
|
||||
const volume = segmentationService.getLabelmapVolume(segmentation.segmentationId);
|
||||
const [timeData, ijkCoords] = utilities.dynamicVolume.getDataInTime(dynamicVolume, {
|
||||
maskVolumeId: segmentation.id,
|
||||
maskVolumeId: volume.volumeId,
|
||||
}) as number[][];
|
||||
|
||||
if (summaryStats) {
|
||||
@@ -113,17 +113,33 @@ const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
for (let timeIndex = 0; timeIndex < maxLength; timeIndex++) {
|
||||
// for each voxel in the ROI, get the value at the current time point
|
||||
const voxelValues = [];
|
||||
let sum = 0;
|
||||
let minValue = Infinity;
|
||||
let maxValue = -Infinity;
|
||||
let minIndex = 0;
|
||||
let maxIndex = 0;
|
||||
|
||||
// Single pass through the data to collect all needed values
|
||||
for (let voxelIndex = 0; voxelIndex < numVoxels; voxelIndex++) {
|
||||
voxelValues.push(timeData[voxelIndex][timeIndex]);
|
||||
const value = timeData[voxelIndex][timeIndex];
|
||||
voxelValues.push(value);
|
||||
sum += value;
|
||||
|
||||
if (value < minValue) {
|
||||
minValue = value;
|
||||
minIndex = voxelIndex;
|
||||
}
|
||||
if (value > maxValue) {
|
||||
maxValue = value;
|
||||
maxIndex = voxelIndex;
|
||||
}
|
||||
}
|
||||
|
||||
mean.push(voxelValues.reduce((acc, value) => acc + value, 0) / numVoxels);
|
||||
const minimum = Math.min(...voxelValues);
|
||||
min.push(minimum);
|
||||
minIJK.push(ijkCoords[voxelValues.indexOf(minimum)]);
|
||||
const maximum = Math.max(...voxelValues);
|
||||
max.push(maximum);
|
||||
maxIJK.push(ijkCoords[voxelValues.indexOf(maximum)]);
|
||||
mean.push(sum / numVoxels);
|
||||
min.push(minValue);
|
||||
minIJK.push(ijkCoords[minIndex]);
|
||||
max.push(maxValue);
|
||||
maxIJK.push(ijkCoords[maxIndex]);
|
||||
std.push(calculateStandardDeviation(voxelValues));
|
||||
}
|
||||
|
||||
@@ -247,7 +263,7 @@ const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
}
|
||||
}
|
||||
|
||||
viewportGridService.setDisplaySetsForViewports(viewportsToUpdate);
|
||||
commandsManager.run('setDisplaySetsForViewports', { viewportsToUpdate });
|
||||
},
|
||||
swapComputedWithDynamicDisplaySet: () => {
|
||||
// Todo: this assumes there is only one dynamic display set in the viewer
|
||||
@@ -297,7 +313,7 @@ const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
}
|
||||
}
|
||||
|
||||
viewportGridService.setDisplaySetsForViewports(viewportsToUpdate);
|
||||
commandsManager.run('setDisplaySetsForViewports', { viewportsToUpdate });
|
||||
},
|
||||
createNewLabelMapForDynamicVolume: async ({ label }) => {
|
||||
const { viewports, activeViewportId } = viewportGridService.getState();
|
||||
@@ -340,30 +356,19 @@ const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
throw new Error('No reference display set found based on the dynamic data');
|
||||
}
|
||||
|
||||
const segmentationId = await segmentationService.createSegmentationForDisplaySet(
|
||||
referenceDisplaySet.displaySetInstanceUID,
|
||||
{ label }
|
||||
const displaySet = displaySetService.getDisplaySetByUID(
|
||||
referenceDisplaySet.displaySetInstanceUID
|
||||
);
|
||||
|
||||
// Add Segmentation to all toolGroupIds in the viewer
|
||||
const toolGroupIds = Array.from(
|
||||
viewports.values(),
|
||||
viewport => viewport.viewportOptions.toolGroupId
|
||||
);
|
||||
const segmentationId = await segmentationService.createLabelmapForDisplaySet(displaySet, {
|
||||
label,
|
||||
});
|
||||
|
||||
const representationType = LABELMAP;
|
||||
const firstViewport = viewports.values().next().value;
|
||||
|
||||
for (const toolGroupId of toolGroupIds) {
|
||||
const hydrateSegmentation = true;
|
||||
await segmentationService.addSegmentationRepresentationToToolGroup(
|
||||
toolGroupId,
|
||||
segmentationId,
|
||||
hydrateSegmentation,
|
||||
representationType
|
||||
);
|
||||
|
||||
segmentationService.setActiveSegmentationForToolGroup(segmentationId, toolGroupId);
|
||||
}
|
||||
await segmentationService.addSegmentationRepresentation(firstViewport.viewportId, {
|
||||
segmentationId,
|
||||
});
|
||||
|
||||
return segmentationId;
|
||||
},
|
||||
|
||||
@@ -147,8 +147,8 @@ function getFusionViewports() {
|
||||
name: DEFAULT_COLORMAP,
|
||||
opacity: [
|
||||
{ value: 0, opacity: 0 },
|
||||
{ value: 0.1, opacity: 0.3 },
|
||||
{ value: 1, opacity: 0.3 },
|
||||
{ value: 0.1, opacity: 0.8 },
|
||||
{ value: 1, opacity: 0.8 },
|
||||
],
|
||||
},
|
||||
};
|
||||
@@ -191,6 +191,15 @@ function getFusionViewports() {
|
||||
syncInvertState: false,
|
||||
},
|
||||
},
|
||||
{
|
||||
type: 'hydrateseg',
|
||||
id: 'sameFORId',
|
||||
source: true,
|
||||
target: true,
|
||||
options: {
|
||||
matchingRules: ['sameFOR'],
|
||||
},
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
@@ -240,6 +249,15 @@ function getFusionViewports() {
|
||||
syncInvertState: false,
|
||||
},
|
||||
},
|
||||
{
|
||||
type: 'hydrateseg',
|
||||
id: 'sameFORId',
|
||||
source: true,
|
||||
target: true,
|
||||
options: {
|
||||
matchingRules: ['sameFOR'],
|
||||
},
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
@@ -289,6 +307,15 @@ function getFusionViewports() {
|
||||
syncInvertState: false,
|
||||
},
|
||||
},
|
||||
{
|
||||
type: 'hydrateseg',
|
||||
id: 'sameFORId',
|
||||
source: true,
|
||||
target: true,
|
||||
options: {
|
||||
matchingRules: ['sameFOR'],
|
||||
},
|
||||
},
|
||||
],
|
||||
},
|
||||
displaySets: [
|
||||
|
||||
@@ -1,10 +1,11 @@
|
||||
import React from 'react';
|
||||
import { DynamicDataPanel } from './panels';
|
||||
import { Toolbox } from '@ohif/ui-next';
|
||||
import { Toolbox } from '@ohif/extension-default';
|
||||
import { PanelSegmentation } from '@ohif/extension-cornerstone';
|
||||
import DynamicExport from './panels/DynamicExport';
|
||||
|
||||
function getPanelModule({ commandsManager, extensionManager, servicesManager }) {
|
||||
const wrappedDynamicDataPanel = ({}) => {
|
||||
function getPanelModule({ commandsManager, extensionManager, servicesManager, configuration }) {
|
||||
const wrappedDynamicDataPanel = () => {
|
||||
return (
|
||||
<DynamicDataPanel
|
||||
commandsManager={commandsManager}
|
||||
@@ -14,28 +15,24 @@ function getPanelModule({ commandsManager, extensionManager, servicesManager })
|
||||
);
|
||||
};
|
||||
|
||||
const wrappedDynamicToolbox = ({}) => {
|
||||
const wrappedDynamicSegmentation = () => {
|
||||
return (
|
||||
<>
|
||||
<Toolbox
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
extensionManager={extensionManager}
|
||||
buttonSectionId="dynamic-toolbox"
|
||||
title="Threshold Tools"
|
||||
/>
|
||||
</>
|
||||
);
|
||||
};
|
||||
|
||||
const wrappedDynamicExport = () => {
|
||||
return (
|
||||
<>
|
||||
<DynamicExport
|
||||
commandsManager={commandsManager}
|
||||
<PanelSegmentation
|
||||
servicesManager={servicesManager}
|
||||
commandsManager={commandsManager}
|
||||
extensionManager={extensionManager}
|
||||
/>
|
||||
configuration={configuration}
|
||||
>
|
||||
<DynamicExport
|
||||
servicesManager={servicesManager}
|
||||
commandsManager={commandsManager}
|
||||
/>
|
||||
</PanelSegmentation>
|
||||
</>
|
||||
);
|
||||
};
|
||||
@@ -49,18 +46,11 @@ function getPanelModule({ commandsManager, extensionManager, servicesManager })
|
||||
component: wrappedDynamicDataPanel,
|
||||
},
|
||||
{
|
||||
name: 'dynamic-toolbox',
|
||||
iconName: 'tab-4d',
|
||||
iconLabel: '4D Workflow',
|
||||
label: 'Dynamic Toolbox',
|
||||
component: wrappedDynamicToolbox,
|
||||
},
|
||||
{
|
||||
name: 'dynamic-export',
|
||||
iconName: 'tab-4d',
|
||||
iconLabel: '4D Workflow',
|
||||
label: '4D Workflow',
|
||||
component: wrappedDynamicExport,
|
||||
name: 'dynamic-segmentation',
|
||||
iconName: 'tab-segmentation',
|
||||
iconLabel: 'Segmentation',
|
||||
label: 'Segmentation',
|
||||
component: wrappedDynamicSegmentation,
|
||||
},
|
||||
];
|
||||
}
|
||||
|
||||
@@ -1,6 +1,5 @@
|
||||
import React from 'react';
|
||||
import PanelGenerateImage from './PanelGenerateImage';
|
||||
import { Separator } from '@ohif/ui-next';
|
||||
|
||||
function DynamicDataPanel({ servicesManager, commandsManager, tab }: withAppTypes) {
|
||||
return (
|
||||
|
||||
@@ -1,73 +1,52 @@
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import { ActionButtons } from '@ohif/ui';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import React from 'react';
|
||||
import { Button, Icons } from '@ohif/ui-next';
|
||||
import { useSegmentations } from '@ohif/extension-cornerstone';
|
||||
|
||||
function DynamicExport({ commandsManager, servicesManager, extensionManager }: withAppTypes) {
|
||||
const { segmentationService } = servicesManager.services;
|
||||
const { t } = useTranslation('dynamicExport');
|
||||
function DynamicExport({ commandsManager, servicesManager }: withAppTypes) {
|
||||
const segmentations = useSegmentations({ servicesManager });
|
||||
|
||||
const [segmentations, setSegmentations] = useState(() => segmentationService.getSegmentations());
|
||||
|
||||
const actions = [
|
||||
{
|
||||
label: 'Export Time Data',
|
||||
onClick: () => {
|
||||
commandsManager.runCommand('exportTimeReportCSV', {
|
||||
segmentations,
|
||||
options: {
|
||||
filename: 'TimeData.csv',
|
||||
},
|
||||
});
|
||||
},
|
||||
disabled: !segmentations?.length,
|
||||
},
|
||||
{
|
||||
label: 'Export ROI Stats',
|
||||
onClick: () => {
|
||||
commandsManager.runCommand('exportTimeReportCSV', {
|
||||
segmentations,
|
||||
summaryStats: true,
|
||||
options: {
|
||||
filename: 'ROIStats.csv',
|
||||
},
|
||||
});
|
||||
},
|
||||
disabled: !segmentations?.length,
|
||||
},
|
||||
];
|
||||
|
||||
/**
|
||||
* Update UI based on segmentation changes (added, removed, updated)
|
||||
*/
|
||||
useEffect(() => {
|
||||
// ~~ Subscription
|
||||
const added = segmentationService.EVENTS.SEGMENTATION_ADDED;
|
||||
const updated = segmentationService.EVENTS.SEGMENTATION_UPDATED;
|
||||
const removed = segmentationService.EVENTS.SEGMENTATION_REMOVED;
|
||||
const subscriptions = [];
|
||||
|
||||
[added, updated, removed].forEach(evt => {
|
||||
const { unsubscribe } = segmentationService.subscribe(evt, () => {
|
||||
const segmentations = segmentationService.getSegmentations();
|
||||
setSegmentations(segmentations);
|
||||
});
|
||||
subscriptions.push(unsubscribe);
|
||||
});
|
||||
|
||||
return () => {
|
||||
subscriptions.forEach(unsub => {
|
||||
unsub();
|
||||
});
|
||||
};
|
||||
}, []);
|
||||
if (!segmentations?.length) {
|
||||
return null;
|
||||
}
|
||||
|
||||
return (
|
||||
<div>
|
||||
<div className="mt-3 flex justify-center px-2">
|
||||
<ActionButtons
|
||||
actions={actions}
|
||||
t={t}
|
||||
/>
|
||||
<div className="flex gap-2">
|
||||
<div className="flex h-8 w-full items-center rounded pr-0.5">
|
||||
<Button
|
||||
size="sm"
|
||||
variant="ghost"
|
||||
className="pl-1.5"
|
||||
onClick={() => {
|
||||
commandsManager.runCommand('exportTimeReportCSV', {
|
||||
segmentations,
|
||||
options: {
|
||||
filename: 'TimeData.csv',
|
||||
},
|
||||
});
|
||||
}}
|
||||
>
|
||||
<Icons.Export />
|
||||
<span className="pl-1">Time Data</span>
|
||||
</Button>
|
||||
</div>
|
||||
<div className="flex h-8 w-full items-center rounded pr-0.5">
|
||||
<Button
|
||||
size="sm"
|
||||
variant="ghost"
|
||||
className="pl-1.5"
|
||||
onClick={() => {
|
||||
commandsManager.runCommand('exportTimeReportCSV', {
|
||||
segmentations,
|
||||
summaryStats: true,
|
||||
options: {
|
||||
filename: 'ROIStats.csv',
|
||||
},
|
||||
});
|
||||
}}
|
||||
>
|
||||
<Icons.Export />
|
||||
<span className="pl-1">ROI Stats</span>
|
||||
</Button>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
|
||||
@@ -1,37 +1,45 @@
|
||||
import React, { useEffect, useState } from 'react';
|
||||
import React, { useState } from 'react';
|
||||
import {
|
||||
InputDoubleRange,
|
||||
Tabs,
|
||||
TabsList,
|
||||
TabsTrigger,
|
||||
Button,
|
||||
PanelSection,
|
||||
ButtonGroup,
|
||||
IconButton,
|
||||
InputNumber,
|
||||
Icon,
|
||||
Icons,
|
||||
Tooltip,
|
||||
} from '@ohif/ui';
|
||||
|
||||
TooltipTrigger,
|
||||
TooltipContent,
|
||||
Numeric,
|
||||
} from '@ohif/ui-next';
|
||||
import { Enums } from '@cornerstonejs/core';
|
||||
|
||||
const controlClassNames = {
|
||||
sizeClassName: 'w-[58px] h-[28px]',
|
||||
arrowsDirection: 'horizontal',
|
||||
labelPosition: 'bottom',
|
||||
// Helper function to safely convert any value to uppercase string
|
||||
const toUpperCaseString = value => {
|
||||
if (value === null || value === undefined) {
|
||||
return '';
|
||||
}
|
||||
return String(value).toUpperCase();
|
||||
};
|
||||
|
||||
const Header = ({ title, tooltip }) => (
|
||||
<div className="flex items-center space-x-1">
|
||||
<Tooltip
|
||||
content={<div className="text-white">{tooltip}</div>}
|
||||
position="bottom-left"
|
||||
tight={true}
|
||||
tooltipBoxClassName="max-w-xs p-2"
|
||||
>
|
||||
<Icon
|
||||
name="info-link"
|
||||
className="text-primary-active h-[14px] w-[14px]"
|
||||
/>
|
||||
<Tooltip>
|
||||
<TooltipTrigger asChild>
|
||||
<span>
|
||||
<Icons.ByName
|
||||
name="info-link"
|
||||
className="text-primary h-3 w-3"
|
||||
/>
|
||||
</span>
|
||||
</TooltipTrigger>
|
||||
<TooltipContent
|
||||
sideOffset={4}
|
||||
className="max-w-xs"
|
||||
>
|
||||
<div>{tooltip}</div>
|
||||
</TooltipContent>
|
||||
</Tooltip>
|
||||
<span className="text-aqua-pale text-[11px] uppercase">{title}</span>
|
||||
<span className="text-muted-foreground text-xs uppercase tracking-wide">{title}</span>
|
||||
</div>
|
||||
);
|
||||
|
||||
@@ -44,138 +52,149 @@ const DynamicVolumeControls = ({
|
||||
minFps,
|
||||
maxFps,
|
||||
// Frames
|
||||
currentFrameIndex,
|
||||
onFrameChange,
|
||||
framesLength,
|
||||
currentDimensionGroupNumber,
|
||||
onDimensionGroupChange,
|
||||
numDimensionGroups,
|
||||
onGenerate,
|
||||
onDoubleRangeChange,
|
||||
rangeValues,
|
||||
onDynamicClick,
|
||||
}) => {
|
||||
const [computedView, setComputedView] = useState(false);
|
||||
|
||||
const [computeViewMode, setComputeViewMode] = useState(Enums.DynamicOperatorType.SUM);
|
||||
|
||||
const [sliderRangeValues, setSliderRangeValues] = useState([framesLength / 4, framesLength / 2]);
|
||||
|
||||
useEffect(() => {
|
||||
setSliderRangeValues([framesLength / 4, framesLength / 2]);
|
||||
}, [framesLength]);
|
||||
|
||||
const handleSliderChange = newValues => {
|
||||
onDoubleRangeChange(newValues);
|
||||
|
||||
if (newValues[0] === sliderRangeValues[0] && newValues[1] === sliderRangeValues[1]) {
|
||||
return;
|
||||
// Wrapper for onGenerate to handle potential errors
|
||||
const handleGenerate = () => {
|
||||
try {
|
||||
if (typeof onGenerate === 'function') {
|
||||
onGenerate(computeViewMode);
|
||||
} else {
|
||||
console.error('onGenerate is not a function', onGenerate);
|
||||
}
|
||||
} catch (error) {
|
||||
console.error('Error in onGenerate:', error);
|
||||
}
|
||||
setSliderRangeValues(newValues);
|
||||
};
|
||||
|
||||
return (
|
||||
<div className="flex select-none flex-col">
|
||||
<PanelSection
|
||||
title="Controls"
|
||||
childrenClassName="space-y-4 pb-5 px-5"
|
||||
>
|
||||
<div className="mt-2">
|
||||
<Header
|
||||
title="View"
|
||||
tooltip={
|
||||
'Select the view mode, 4D to view the dynamic volume or Computed to view the computed volume'
|
||||
}
|
||||
/>
|
||||
<ButtonGroup className="mt-2 w-full">
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => {
|
||||
setComputedView(false);
|
||||
onDynamicClick?.();
|
||||
<PanelSection defaultOpen={true}>
|
||||
<PanelSection.Header>Controls</PanelSection.Header>
|
||||
<PanelSection.Content className="bg-muted space-y-4 px-5 pt-2 pb-4">
|
||||
<div className="mb-4">
|
||||
<Header
|
||||
title="View"
|
||||
tooltip={
|
||||
'Select the view mode, 4D to view the dynamic volume or Computed to view the computed volume'
|
||||
}
|
||||
/>
|
||||
<Tabs
|
||||
value={computedView ? 'computed' : '4d'}
|
||||
onValueChange={value => {
|
||||
const isComputed = value === 'computed';
|
||||
setComputedView(isComputed);
|
||||
if (!isComputed && typeof onDynamicClick === 'function') {
|
||||
onDynamicClick();
|
||||
}
|
||||
}}
|
||||
className="my-2 w-full"
|
||||
>
|
||||
4D
|
||||
</button>
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => {
|
||||
setComputedView(true);
|
||||
}}
|
||||
>
|
||||
Computed
|
||||
</button>
|
||||
</ButtonGroup>
|
||||
</div>
|
||||
<div>
|
||||
<FrameControls
|
||||
onPlayPauseChange={onPlayPauseChange}
|
||||
isPlaying={isPlaying}
|
||||
computedView={computedView}
|
||||
// fps
|
||||
fps={fps}
|
||||
onFpsChange={onFpsChange}
|
||||
minFps={minFps}
|
||||
maxFps={maxFps}
|
||||
//
|
||||
framesLength={framesLength}
|
||||
onFrameChange={onFrameChange}
|
||||
currentFrameIndex={currentFrameIndex}
|
||||
/>
|
||||
</div>
|
||||
<div className={`mt-6 flex flex-col ${computedView ? '' : 'ohif-disabled'}`}>
|
||||
<Header
|
||||
title="Computed Operation"
|
||||
tooltip={
|
||||
<div>
|
||||
Operation Buttons (SUM, AVERAGE, SUBTRACT): Select the mathematical operation to be
|
||||
applied to the data set.
|
||||
<br></br> Range Slider: Choose the numeric range within which the operation will be
|
||||
performed.
|
||||
<br></br>Generate Button: Execute the chosen operation on the specified range of
|
||||
data.{' '}
|
||||
</div>
|
||||
}
|
||||
/>
|
||||
<ButtonGroup
|
||||
className={`mt-2 w-full `}
|
||||
separated={true}
|
||||
>
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => setComputeViewMode(Enums.DynamicOperatorType.SUM)}
|
||||
>
|
||||
{Enums.DynamicOperatorType.SUM.toString().toUpperCase()}
|
||||
</button>
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => setComputeViewMode(Enums.DynamicOperatorType.AVERAGE)}
|
||||
>
|
||||
{Enums.DynamicOperatorType.AVERAGE.toString().toUpperCase()}
|
||||
</button>
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => setComputeViewMode(Enums.DynamicOperatorType.SUBTRACT)}
|
||||
>
|
||||
{Enums.DynamicOperatorType.SUBTRACT.toString().toUpperCase()}
|
||||
</button>
|
||||
</ButtonGroup>
|
||||
<div className="w-ful mt-2">
|
||||
<InputDoubleRange
|
||||
values={sliderRangeValues}
|
||||
onChange={handleSliderChange}
|
||||
minValue={0}
|
||||
showLabel={true}
|
||||
allowNumberEdit={true}
|
||||
maxValue={framesLength}
|
||||
step={1}
|
||||
<TabsList className="w-full">
|
||||
<TabsTrigger
|
||||
value="4d"
|
||||
className="w-1/2"
|
||||
>
|
||||
4D
|
||||
</TabsTrigger>
|
||||
<TabsTrigger
|
||||
value="computed"
|
||||
className="w-1/2"
|
||||
>
|
||||
Computed
|
||||
</TabsTrigger>
|
||||
</TabsList>
|
||||
</Tabs>
|
||||
</div>
|
||||
<div>
|
||||
<DimensionGroupControls
|
||||
onPlayPauseChange={onPlayPauseChange}
|
||||
isPlaying={isPlaying}
|
||||
computedView={computedView}
|
||||
// fps
|
||||
fps={fps}
|
||||
onFpsChange={onFpsChange}
|
||||
minFps={minFps}
|
||||
maxFps={maxFps}
|
||||
//
|
||||
numDimensionGroups={numDimensionGroups}
|
||||
onDimensionGroupChange={onDimensionGroupChange}
|
||||
currentDimensionGroupNumber={currentDimensionGroupNumber}
|
||||
/>
|
||||
</div>
|
||||
<Button
|
||||
className="mt-2 !h-[26px] !w-[115px] self-start !p-0"
|
||||
onClick={() => {
|
||||
onGenerate(computeViewMode);
|
||||
}}
|
||||
>
|
||||
Generate
|
||||
</Button>
|
||||
</div>
|
||||
<div className={`mt-3 flex flex-col ${computedView ? '' : 'ohif-disabled'}`}>
|
||||
<Header
|
||||
title="Computed Operation"
|
||||
tooltip={
|
||||
<div>
|
||||
Operation Buttons (SUM, AVERAGE, SUBTRACT): Select the mathematical operation to
|
||||
be applied to the data set.
|
||||
<br /> Range Slider: Choose the numeric range of dimension groups within which the
|
||||
operation will be performed.
|
||||
<br />
|
||||
Generate Button: Execute the chosen operation on the specified range of data.
|
||||
</div>
|
||||
}
|
||||
/>
|
||||
<Tabs
|
||||
value={String(computeViewMode)}
|
||||
onValueChange={value => {
|
||||
setComputeViewMode(value);
|
||||
}}
|
||||
className="mt-2 w-full"
|
||||
>
|
||||
<TabsList className="w-full gap-1">
|
||||
{' '}
|
||||
<TabsTrigger
|
||||
value={String(Enums.DynamicOperatorType.SUM)}
|
||||
className="w-1/3"
|
||||
>
|
||||
{toUpperCaseString(Enums.DynamicOperatorType.SUM)}
|
||||
</TabsTrigger>
|
||||
<TabsTrigger
|
||||
value={String(Enums.DynamicOperatorType.AVERAGE)}
|
||||
className="w-1/3"
|
||||
>
|
||||
{toUpperCaseString(Enums.DynamicOperatorType.AVERAGE)}
|
||||
</TabsTrigger>
|
||||
<TabsTrigger
|
||||
value={String(Enums.DynamicOperatorType.SUBTRACT)}
|
||||
className="w-1/3"
|
||||
>
|
||||
{toUpperCaseString(Enums.DynamicOperatorType.SUBTRACT)}
|
||||
</TabsTrigger>
|
||||
</TabsList>
|
||||
</Tabs>
|
||||
<div className="mt-2 w-full">
|
||||
<Numeric.Container
|
||||
mode="doubleRange"
|
||||
min={1}
|
||||
max={numDimensionGroups || 1}
|
||||
values={rangeValues || [1, numDimensionGroups || 1]}
|
||||
onChange={onDoubleRangeChange || (() => {})}
|
||||
>
|
||||
<Numeric.DoubleRange showNumberInputs />
|
||||
</Numeric.Container>
|
||||
</div>
|
||||
<Button
|
||||
variant="default"
|
||||
size="sm"
|
||||
className="mt-2 h-[26px] w-[115px] self-start p-0"
|
||||
onClick={handleGenerate}
|
||||
>
|
||||
Generate
|
||||
</Button>
|
||||
</div>
|
||||
</PanelSection.Content>
|
||||
</PanelSection>
|
||||
</div>
|
||||
);
|
||||
@@ -183,58 +202,84 @@ const DynamicVolumeControls = ({
|
||||
|
||||
export default DynamicVolumeControls;
|
||||
|
||||
function FrameControls({
|
||||
function DimensionGroupControls({
|
||||
isPlaying,
|
||||
onPlayPauseChange,
|
||||
fps,
|
||||
minFps,
|
||||
maxFps,
|
||||
onFpsChange,
|
||||
framesLength,
|
||||
onFrameChange,
|
||||
currentFrameIndex,
|
||||
numDimensionGroups,
|
||||
onDimensionGroupChange,
|
||||
currentDimensionGroupNumber,
|
||||
computedView,
|
||||
}) {
|
||||
const getPlayPauseIconName = () => (isPlaying ? 'icon-pause' : 'icon-play');
|
||||
|
||||
return (
|
||||
<div className={computedView && 'ohif-disabled'}>
|
||||
<div className={computedView ? 'ohif-disabled' : ''}>
|
||||
<Header
|
||||
title="4D Controls"
|
||||
tooltip={
|
||||
<div>
|
||||
Play/Pause Button: Begin or pause the animation of the 4D visualization. <br></br> Frame
|
||||
Selector: Navigate through individual frames of the 4D data. <br></br> FPS (Frames Per
|
||||
Second) Selector: Adjust the playback speed of the animation.
|
||||
Play/Pause Button: Begin or pause the animation of the 4D visualization. <br />
|
||||
Dimension Group Selector: Navigate through individual dimension groups of the 4D data.{' '}
|
||||
<br />
|
||||
FPS (Frames Per Second) Selector: Adjust the playback speed of the animation.
|
||||
</div>
|
||||
}
|
||||
/>
|
||||
<div className="mt-3 flex justify-between">
|
||||
<IconButton
|
||||
className="bg-customblue-30 h-[26px] w-[58px] rounded-[4px]"
|
||||
onClick={() => onPlayPauseChange(!isPlaying)}
|
||||
<Button
|
||||
id="play-pause-button"
|
||||
variant="secondary"
|
||||
size="default"
|
||||
className="w-[58px]"
|
||||
onClick={() => {
|
||||
if (typeof onPlayPauseChange === 'function') {
|
||||
onPlayPauseChange(!isPlaying);
|
||||
}
|
||||
}}
|
||||
>
|
||||
<Icon
|
||||
<Icons.ByName
|
||||
name={getPlayPauseIconName()}
|
||||
className=" active:text-primary-light hover:bg-customblue-300 h-[24px] w-[24px] cursor-pointer text-white"
|
||||
className="text-foreground h-[24px] w-[24px]"
|
||||
/>
|
||||
</IconButton>
|
||||
<InputNumber
|
||||
value={currentFrameIndex}
|
||||
onChange={onFrameChange}
|
||||
minValue={0}
|
||||
maxValue={framesLength}
|
||||
label="Frame"
|
||||
{...controlClassNames}
|
||||
/>
|
||||
<InputNumber
|
||||
value={fps}
|
||||
onChange={onFpsChange}
|
||||
minValue={minFps}
|
||||
maxValue={maxFps}
|
||||
{...controlClassNames}
|
||||
label="FPS"
|
||||
/>
|
||||
</Button>
|
||||
|
||||
<Numeric.Container
|
||||
mode="stepper"
|
||||
value={currentDimensionGroupNumber || 1}
|
||||
onChange={onDimensionGroupChange || (() => {})}
|
||||
min={1}
|
||||
max={numDimensionGroups || 1}
|
||||
step={1}
|
||||
>
|
||||
<div className="flex flex-col items-center">
|
||||
<Numeric.NumberStepper
|
||||
className="h-[28px] w-[58px]"
|
||||
direction="horizontal"
|
||||
/>
|
||||
<Numeric.Label className="text-muted-foreground mt-1 text-sm">Frame</Numeric.Label>
|
||||
</div>
|
||||
</Numeric.Container>
|
||||
|
||||
<Numeric.Container
|
||||
mode="stepper"
|
||||
value={fps || 1}
|
||||
onChange={onFpsChange || (() => {})}
|
||||
min={minFps || 1}
|
||||
max={maxFps || 30}
|
||||
step={1}
|
||||
>
|
||||
<div className="flex flex-col items-center">
|
||||
<Numeric.NumberStepper
|
||||
className="h-[28px] w-[58px]"
|
||||
direction="horizontal"
|
||||
/>
|
||||
<Numeric.Label className="text-muted-foreground mt-1 text-sm">FPS</Numeric.Label>
|
||||
</div>
|
||||
</Numeric.Container>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
|
||||
@@ -1,71 +0,0 @@
|
||||
import React from 'react';
|
||||
import { InputDoubleRange } from '@ohif/ui';
|
||||
import { Select } from '@ohif/ui';
|
||||
import { Button } from '@ohif/ui';
|
||||
import PropTypes from 'prop-types';
|
||||
|
||||
const GenerateVolume = ({
|
||||
rangeValues,
|
||||
handleSliderChange,
|
||||
operationsUI,
|
||||
options,
|
||||
handleGenerateOptionsChange,
|
||||
onGenerateImage,
|
||||
returnTo4D,
|
||||
displayingComputedVolume,
|
||||
}) => {
|
||||
return (
|
||||
<>
|
||||
<div>
|
||||
<div className="mb-2 text-white">Computed Image</div>
|
||||
<Select
|
||||
closeMenuOnSelect={true}
|
||||
className="border-primary-main mr-2 bg-black text-white "
|
||||
options={operationsUI}
|
||||
placeholder={operationsUI.find(option => option.value === options.Operation).placeHolder}
|
||||
value={options.Operation}
|
||||
onChange={({ value }) => {
|
||||
handleGenerateOptionsChange({
|
||||
Operation: value,
|
||||
});
|
||||
}}
|
||||
/>
|
||||
<InputDoubleRange
|
||||
values={rangeValues}
|
||||
onChange={handleSliderChange}
|
||||
minValue={rangeValues[0] || 1}
|
||||
maxValue={rangeValues[1] || 2}
|
||||
showLabel={true}
|
||||
step={1}
|
||||
/>
|
||||
<div className="flex space-x-2">
|
||||
<Button
|
||||
onClick={onGenerateImage}
|
||||
className="w-1/2"
|
||||
>
|
||||
Generate
|
||||
</Button>
|
||||
<Button
|
||||
onClick={returnTo4D}
|
||||
disabled={!displayingComputedVolume}
|
||||
className="w-1/2"
|
||||
>
|
||||
Return To 4D
|
||||
</Button>
|
||||
</div>
|
||||
</div>
|
||||
</>
|
||||
);
|
||||
};
|
||||
|
||||
GenerateVolume.propTypes = {
|
||||
rangeValues: PropTypes.array.isRequired,
|
||||
handleSliderChange: PropTypes.func.isRequired,
|
||||
operationsUI: PropTypes.array.isRequired,
|
||||
options: PropTypes.object.isRequired,
|
||||
handleGenerateOptionsChange: PropTypes.func.isRequired,
|
||||
onGenerateImage: PropTypes.func.isRequired,
|
||||
returnTo4D: PropTypes.func.isRequired,
|
||||
};
|
||||
|
||||
export default GenerateVolume;
|
||||
@@ -1,8 +1,7 @@
|
||||
import React, { useEffect, useState, useRef } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { useCine, useViewportGrid } from '@ohif/ui';
|
||||
import { cache, utilities as csUtils, volumeLoader, eventTarget } from '@cornerstonejs/core';
|
||||
import { Enums } from '@cornerstonejs/streaming-image-volume-loader';
|
||||
import { useCine } from '@ohif/ui-next';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import { utilities as csUtils, volumeLoader, eventTarget, Enums, cache } from '@cornerstonejs/core';
|
||||
import { utilities as cstUtils } from '@cornerstonejs/tools';
|
||||
import DynamicVolumeControls from './DynamicVolumeControls';
|
||||
|
||||
@@ -16,13 +15,12 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
const [{ activeViewportId }] = useViewportGrid();
|
||||
|
||||
//
|
||||
const [timePointsRange, setTimePointsRange] = useState([]);
|
||||
const [timePointsRangeToUseForGenerate, setTimePointsRangeToUseForGenerate] = useState([]);
|
||||
const [dimensionGroupRange, setDimensionGroupRange] = useState([1, 1]);
|
||||
const [computedDisplaySet, setComputedDisplaySet] = useState(null);
|
||||
const [dynamicVolume, setDynamicVolume] = useState(null);
|
||||
const [frameRate, setFrameRate] = useState(20);
|
||||
const [isPlaying, setIsPlaying] = useState(isCineEnabled);
|
||||
const [timePointRendered, setTimePointRendered] = useState(null);
|
||||
const [dimensionGroupNumberRendered, setDimensionGroupNumberRendered] = useState(null);
|
||||
const [displayingComputed, setDisplayingComputed] = useState(false);
|
||||
|
||||
//
|
||||
@@ -31,47 +29,61 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
const computedVolumeId = `cornerstoneStreamingImageVolume:${uuidComputedVolume.current}`;
|
||||
|
||||
useEffect(() => {
|
||||
const evt = cornerstoneViewportService.EVENTS.VIEWPORT_DATA_CHANGED;
|
||||
const viewportDataChangedEvt = cornerstoneViewportService.EVENTS.VIEWPORT_DATA_CHANGED;
|
||||
const cineStateChangedEvt = servicesManager.services.cineService.EVENTS.CINE_STATE_CHANGED;
|
||||
|
||||
const { unsubscribe } = cornerstoneViewportService.subscribe(evt, evtDetails => {
|
||||
const viewportDataChangedCallback = evtDetails => {
|
||||
evtDetails.viewportData.data.forEach(volumeData => {
|
||||
if (volumeData.volume.isDynamicVolume()) {
|
||||
if (volumeData.volume?.isDynamicVolume()) {
|
||||
setDynamicVolume(volumeData.volume);
|
||||
uuidDynamicVolume.current = volumeData.displaySetInstanceUID;
|
||||
setTimePointsRange([1, volumeData.volume.numTimePoints]);
|
||||
const newRange = [1, volumeData.volume.numDimensionGroups];
|
||||
setDimensionGroupRange(newRange);
|
||||
}
|
||||
});
|
||||
});
|
||||
|
||||
return () => {
|
||||
unsubscribe();
|
||||
};
|
||||
}, [cornerstoneViewportService]);
|
||||
|
||||
useEffect(() => {
|
||||
const { unsubscribe } = servicesManager.services.cineService.subscribe(
|
||||
servicesManager.services.cineService.EVENTS.CINE_STATE_CHANGED,
|
||||
evt => {
|
||||
setIsPlaying(evt.isPlaying);
|
||||
}
|
||||
const cineStateChangedCallback = evt => {
|
||||
setIsPlaying(evt.isPlaying);
|
||||
};
|
||||
|
||||
const { unsubscribe: unsubscribeViewportData } = cornerstoneViewportService.subscribe(
|
||||
viewportDataChangedEvt,
|
||||
viewportDataChangedCallback
|
||||
);
|
||||
const { unsubscribe: unsubscribeCineState } = servicesManager.services.cineService.subscribe(
|
||||
cineStateChangedEvt,
|
||||
cineStateChangedCallback
|
||||
);
|
||||
|
||||
return () => {
|
||||
unsubscribe();
|
||||
unsubscribeViewportData();
|
||||
unsubscribeCineState();
|
||||
};
|
||||
}, [cineService]);
|
||||
}, [cornerstoneViewportService, cineService, servicesManager.services.cineService]);
|
||||
|
||||
useEffect(() => {
|
||||
const evt = Enums.Events.DYNAMIC_VOLUME_DIMENSION_GROUP_CHANGED;
|
||||
|
||||
const callback = evt => {
|
||||
setDimensionGroupNumberRendered(evt.detail.dimensionGroupNumber);
|
||||
};
|
||||
|
||||
eventTarget.addEventListener(evt, callback);
|
||||
|
||||
return () => {
|
||||
eventTarget.removeEventListener(evt, callback);
|
||||
};
|
||||
}, []);
|
||||
|
||||
useEffect(() => {
|
||||
const displaySetUIDs = viewportGridService.getDisplaySetsUIDsForViewport(activeViewportId);
|
||||
|
||||
if (!displaySetUIDs || displaySetUIDs.length === 0) {
|
||||
if (!displaySetUIDs?.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
const displaySets = displaySetUIDs.map(displaySetUID =>
|
||||
displaySetService.getDisplaySetByUID(displaySetUID)
|
||||
);
|
||||
|
||||
const displaySets = displaySetUIDs.map(displaySetService.getDisplaySetByUID);
|
||||
const dynamicVolumeDisplaySet = displaySets.find(displaySet => displaySet.isDynamicVolume);
|
||||
|
||||
if (!dynamicVolumeDisplaySet) {
|
||||
@@ -88,23 +100,14 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
|
||||
setDynamicVolume(dynamicVolume);
|
||||
uuidDynamicVolume.current = dynamicVolumeDisplaySet.displaySetInstanceUID;
|
||||
setTimePointsRange([1, dynamicVolume.numTimePoints]);
|
||||
}, [activeViewportId, cornerstoneViewportService]);
|
||||
|
||||
useEffect(() => {
|
||||
// ~~ Subscription
|
||||
const evt = Enums.Events.DYNAMIC_VOLUME_TIME_POINT_INDEX_CHANGED;
|
||||
|
||||
const callback = evt => {
|
||||
setTimePointRendered(evt.detail.timePointIndex);
|
||||
};
|
||||
|
||||
eventTarget.addEventListener(evt, callback);
|
||||
|
||||
return () => {
|
||||
eventTarget.removeEventListener(evt, callback);
|
||||
};
|
||||
}, [cornerstoneViewportService]);
|
||||
setDimensionGroupRange([1, dynamicVolume.numDimensionGroups]);
|
||||
}, [
|
||||
activeViewportId,
|
||||
viewportGridService,
|
||||
displaySetService,
|
||||
cornerstoneViewportService,
|
||||
cineService,
|
||||
]);
|
||||
|
||||
function renderGeneratedImage(displaySet) {
|
||||
commandsManager.runCommand('swapDynamicWithComputedDisplaySet', {
|
||||
@@ -130,26 +133,20 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
let computedVolume = cache.getVolume(computedVolumeId);
|
||||
|
||||
if (!computedVolume) {
|
||||
await createComputedVolume(dynamicVolumeId, computedVolumeId);
|
||||
computedVolume = cache.getVolume(computedVolumeId);
|
||||
computedVolume = await volumeLoader.createAndCacheDerivedVolume(dynamicVolumeId, {
|
||||
volumeId: computedVolumeId,
|
||||
});
|
||||
}
|
||||
const [start, end] = dimensionGroupRange;
|
||||
// from start to end, with steps of 1
|
||||
const frameNumbers = Array.from({ length: end - start + 1 }, (_, i) => start + i);
|
||||
|
||||
const vals = timePointsRangeToUseForGenerate;
|
||||
const options = {
|
||||
dimensionGroupNumbers: operationName === 'SUBTRACT' ? [start, end] : frameNumbers,
|
||||
targetVolume: computedVolume,
|
||||
};
|
||||
|
||||
const targets = Array.from({ length: vals[1] - vals[0] + 1 }, (_, i) => i + vals[0]);
|
||||
|
||||
const dataInTime = cstUtils.dynamicVolume.generateImageFromTimeData(
|
||||
dynamicVolume,
|
||||
operationName,
|
||||
operationName === 'SUBTRACT' ? vals : targets
|
||||
);
|
||||
|
||||
// Add loadStatus.loaded to computed volume and set to true
|
||||
computedVolume.loadStatus = {};
|
||||
computedVolume.loadStatus.loaded = true;
|
||||
// Set computed scalar data to volume
|
||||
const scalarData = computedVolume.getScalarData();
|
||||
scalarData.set(dataInTime);
|
||||
cstUtils.dynamicVolume.updateVolumeFromTimeData(dynamicVolume, operationName, options);
|
||||
|
||||
// If computed display set does not exist, create an object to be used as
|
||||
// the displaySet. If it does exist, update the image data and vtkTexture
|
||||
@@ -166,6 +163,7 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
madeInClient: true,
|
||||
FrameOfReferenceUID: dynamicVolume.metadata.FrameOfReferenceUID,
|
||||
isDerived: true,
|
||||
imageIds: computedVolume.imageIds,
|
||||
};
|
||||
setComputedDisplaySet(displaySet);
|
||||
renderGeneratedImage(displaySet);
|
||||
@@ -173,19 +171,8 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
commandsManager.runCommand('updateVolumeData', {
|
||||
volume: computedVolume,
|
||||
});
|
||||
// Check if viewport is currently displaying the computed volume, if so,
|
||||
// call render on the viewports to update the image, if not, call
|
||||
// renderGeneratedImage
|
||||
// if (!cache.getVolume(dynamicVolumeId)) {
|
||||
// for (const viewportId of viewports.keys()) {
|
||||
// const viewportForRendering =
|
||||
// cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
// viewportForRendering.render();
|
||||
// }
|
||||
// } else {
|
||||
cornerstoneViewportService.getRenderingEngine().render();
|
||||
renderGeneratedImage(computedDisplaySet);
|
||||
// }
|
||||
}
|
||||
}
|
||||
|
||||
@@ -217,21 +204,6 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
handlePlay();
|
||||
};
|
||||
|
||||
function handleSliderChange(newValues) {
|
||||
if (
|
||||
newValues[0] === timePointsRangeToUseForGenerate[0] &&
|
||||
newValues[1] === timePointsRangeToUseForGenerate[1]
|
||||
) {
|
||||
return;
|
||||
}
|
||||
|
||||
setTimePointsRangeToUseForGenerate(newValues);
|
||||
}
|
||||
|
||||
if (!dynamicVolume || timePointsRange.length === 0) {
|
||||
return null;
|
||||
}
|
||||
|
||||
return (
|
||||
<DynamicVolumeControls
|
||||
fps={frameRate}
|
||||
@@ -239,37 +211,16 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
onPlayPauseChange={onPlayPauseChange}
|
||||
minFps={1}
|
||||
maxFps={50}
|
||||
currentFrameIndex={timePointRendered}
|
||||
onFpsChange={handleSetFrameRate}
|
||||
framesLength={timePointsRange[1]}
|
||||
onFrameChange={timePointIndex => {
|
||||
dynamicVolume.timePointIndex = timePointIndex;
|
||||
currentDimensionGroupNumber={dimensionGroupNumberRendered}
|
||||
numDimensionGroups={dynamicVolume?.numDimensionGroups || 1}
|
||||
onDimensionGroupChange={dimensionGroupNumber => {
|
||||
dynamicVolume.dimensionGroupNumber = dimensionGroupNumber;
|
||||
}}
|
||||
onGenerate={onGenerateImage}
|
||||
onDynamicClick={displayingComputed ? () => renderDynamicImage(computedDisplaySet) : null}
|
||||
onDoubleRangeChange={handleSliderChange}
|
||||
onDoubleRangeChange={setDimensionGroupRange}
|
||||
rangeValues={dimensionGroupRange}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
async function createComputedVolume(dynamicVolumeId, computedVolumeId) {
|
||||
if (!cache.getVolume(computedVolumeId)) {
|
||||
const computedVolume = await volumeLoader.createAndCacheDerivedVolume(dynamicVolumeId, {
|
||||
volumeId: computedVolumeId,
|
||||
});
|
||||
return computedVolume;
|
||||
}
|
||||
}
|
||||
|
||||
PanelGenerateImage.propTypes = {
|
||||
servicesManager: PropTypes.shape({
|
||||
services: PropTypes.shape({
|
||||
measurementService: PropTypes.shape({
|
||||
getMeasurements: PropTypes.func.isRequired,
|
||||
subscribe: PropTypes.func.isRequired,
|
||||
EVENTS: PropTypes.object.isRequired,
|
||||
VALUE_TYPES: PropTypes.object.isRequired,
|
||||
}).isRequired,
|
||||
}).isRequired,
|
||||
}).isRequired,
|
||||
};
|
||||
@@ -5,7 +5,7 @@ function WorkflowPanel({ servicesManager }: { servicesManager: ServicesManager }
|
||||
const ProgressDropdownWithService =
|
||||
servicesManager.services.customizationService.getCustomization(
|
||||
'progressDropdownWithServiceComponent'
|
||||
).component;
|
||||
);
|
||||
|
||||
return (
|
||||
<div
|
||||
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone",
|
||||
"version": "3.9.0-beta.102",
|
||||
"version": "3.10.2",
|
||||
"description": "OHIF extension for Cornerstone",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -38,10 +38,9 @@
|
||||
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
|
||||
"@cornerstonejs/codec-openjpeg": "^1.2.4",
|
||||
"@cornerstonejs/codec-openjph": "^2.4.5",
|
||||
"@cornerstonejs/dicom-image-loader": "^1.86.0",
|
||||
"@icr/polyseg-wasm": "^0.4.0",
|
||||
"@ohif/core": "3.9.0-beta.102",
|
||||
"@ohif/ui": "3.9.0-beta.102",
|
||||
"@cornerstonejs/dicom-image-loader": "^3.11.6",
|
||||
"@ohif/core": "3.10.2",
|
||||
"@ohif/ui": "3.10.2",
|
||||
"dcmjs": "*",
|
||||
"dicom-parser": "^1.8.21",
|
||||
"hammerjs": "^2.0.8",
|
||||
@@ -50,20 +49,22 @@
|
||||
"react-dom": "^18.3.1",
|
||||
"react-resize-detector": "^10.0.1"
|
||||
},
|
||||
"devDependencies": {
|
||||
"lodash": "^4.17.21"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^1.86.0",
|
||||
"@cornerstonejs/core": "^1.86.0",
|
||||
"@cornerstonejs/streaming-image-volume-loader": "^1.82.4",
|
||||
"@cornerstonejs/tools": "^1.86.0",
|
||||
"@icr/polyseg-wasm": "^0.4.0",
|
||||
"@kitware/vtk.js": "30.4.1",
|
||||
"@cornerstonejs/adapters": "^3.11.6",
|
||||
"@cornerstonejs/ai": "^3.11.6",
|
||||
"@cornerstonejs/core": "^3.11.6",
|
||||
"@cornerstonejs/labelmap-interpolation": "^3.11.6",
|
||||
"@cornerstonejs/polymorphic-segmentation": "^3.11.6",
|
||||
"@cornerstonejs/tools": "^3.11.6",
|
||||
"@itk-wasm/morphological-contour-interpolation": "1.1.0",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"html2canvas": "^1.4.1",
|
||||
"lodash.compact": "^3.0.1",
|
||||
"lodash.debounce": "^4.0.8",
|
||||
"lodash.flatten": "^4.4.0",
|
||||
"lodash.merge": "^4.6.2",
|
||||
"lodash.zip": "^4.2.0",
|
||||
"shader-loader": "^1.3.1",
|
||||
"worker-loader": "^3.0.8"
|
||||
}
|
||||
|
||||
File diff suppressed because it is too large.
Load diff
@@ -2,15 +2,17 @@ import React, { useCallback, useEffect, useMemo, useState } from 'react';
|
||||
import { vec3 } from 'gl-matrix';
|
||||
import PropTypes from 'prop-types';
|
||||
import { metaData, Enums, utilities } from '@cornerstonejs/core';
|
||||
import { ImageSliceData } from '@cornerstonejs/core/dist/esm/types';
|
||||
import { ViewportOverlay } from '@ohif/ui';
|
||||
import { InstanceMetadata } from '@ohif/core/src/types';
|
||||
import { formatPN, formatDICOMDate, formatDICOMTime, formatNumberPrecision } from './utils';
|
||||
import type { ImageSliceData } from '@cornerstonejs/core/types';
|
||||
import { ViewportOverlay } from '@ohif/ui-next';
|
||||
import type { InstanceMetadata } from '@ohif/core/src/types';
|
||||
import { formatDICOMDate, formatDICOMTime, formatNumberPrecision } from './utils';
|
||||
import { utils } from '@ohif/core';
|
||||
import { StackViewportData, VolumeViewportData } from '../../types/CornerstoneCacheService';
|
||||
|
||||
import './CustomizableViewportOverlay.css';
|
||||
|
||||
const EPSILON = 1e-4;
|
||||
const { formatPN } = utils;
|
||||
|
||||
type ViewportData = StackViewportData | VolumeViewportData;
|
||||
|
||||
@@ -45,76 +47,6 @@ const OverlayItemComponents = {
|
||||
'ohif.overlayItem.instanceNumber': InstanceNumberOverlayItem,
|
||||
};
|
||||
|
||||
|
||||
const studyDateItem = {
|
||||
id: 'StudyDate',
|
||||
customizationType: 'ohif.overlayItem',
|
||||
label: '',
|
||||
title: 'Study date',
|
||||
condition: ({ referenceInstance }) => referenceInstance?.StudyDate,
|
||||
contentF: ({ referenceInstance, formatters: { formatDate } }) => formatDate(referenceInstance.StudyDate),
|
||||
};
|
||||
|
||||
const seriesDescriptionItem = {
|
||||
id: 'SeriesDescription',
|
||||
customizationType: 'ohif.overlayItem',
|
||||
label: '',
|
||||
title: 'Series description',
|
||||
condition: ({ referenceInstance }) => {
|
||||
return referenceInstance && referenceInstance.SeriesDescription;
|
||||
},
|
||||
contentF: ({ referenceInstance }) => referenceInstance.SeriesDescription
|
||||
};
|
||||
|
||||
const topLeftItems = { id: 'cornerstoneOverlayTopLeft', items: [studyDateItem, seriesDescriptionItem] };
|
||||
|
||||
const topRightItems = { id: 'cornerstoneOverlayTopRight', items: [] };
|
||||
|
||||
const bottomLeftItems = {
|
||||
id: 'cornerstoneOverlayBottomLeft', items: [
|
||||
{
|
||||
id: 'WindowLevel',
|
||||
customizationType: 'ohif.overlayItem.windowLevel',
|
||||
},
|
||||
{
|
||||
id: 'ZoomLevel',
|
||||
customizationType: 'ohif.overlayItem.zoomLevel',
|
||||
condition: (props) => {
|
||||
const activeToolName = props.toolGroupService.getActiveToolForViewport(props.viewportId);
|
||||
return activeToolName === 'Zoom';
|
||||
},
|
||||
},
|
||||
]
|
||||
};
|
||||
|
||||
const bottomRightItems = {
|
||||
id: 'cornerstoneOverlayBottomRight',
|
||||
items: [
|
||||
{
|
||||
id: 'InstanceNumber',
|
||||
customizationType: 'ohif.overlayItem.instanceNumber',
|
||||
},
|
||||
]
|
||||
};
|
||||
|
||||
/**
|
||||
* The @ohif/cornerstoneOverlay is a default value for a customization
|
||||
* for the cornerstone overlays. The intent is to allow it to be extended
|
||||
* without needing to re-write the individual overlays by using the append
|
||||
* mechanism. Individual attributes can be modified individually without
|
||||
* affecting the other items by using the append as well, with position
|
||||
* based replacement.
|
||||
* This is used as a default in the getCustomizationModule so that it
|
||||
* is available early for additional customization extensions.
|
||||
*/
|
||||
const CornerstoneOverlay = {
|
||||
id: '@ohif/cornerstoneOverlay',
|
||||
topLeftItems,
|
||||
topRightItems,
|
||||
bottomLeftItems,
|
||||
bottomRightItems,
|
||||
};
|
||||
|
||||
/**
|
||||
* Customizable Viewport Overlay
|
||||
*/
|
||||
@@ -137,27 +69,18 @@ function CustomizableViewportOverlay({
|
||||
const [scale, setScale] = useState(1);
|
||||
const { imageIndex } = imageSliceData;
|
||||
|
||||
// The new customization is 'cornerstoneOverlay', with an append or replace
|
||||
// on the individual items rather than defining individual items.
|
||||
const cornerstoneOverlay = customizationService.getCustomization('@ohif/cornerstoneOverlay');
|
||||
|
||||
// Historical usage defined the overlays as separate items due to lack of
|
||||
// append functionality. This code enables the historical usage, but
|
||||
// the recommended functionality is to append to the default values in
|
||||
// cornerstoneOverlay rather than defining individual items.
|
||||
const topLeftCustomization = customizationService.getCustomization(
|
||||
'cornerstoneOverlayTopLeft'
|
||||
) || cornerstoneOverlay?.topLeftItems;
|
||||
const topRightCustomization = customizationService.getCustomization(
|
||||
'cornerstoneOverlayTopRight'
|
||||
) || cornerstoneOverlay?.topRightItems;
|
||||
const topLeftCustomization = customizationService.getCustomization('viewportOverlay.topLeft');
|
||||
const topRightCustomization = customizationService.getCustomization('viewportOverlay.topRight');
|
||||
const bottomLeftCustomization = customizationService.getCustomization(
|
||||
'cornerstoneOverlayBottomLeft'
|
||||
) || cornerstoneOverlay?.bottomLeftItems;
|
||||
'viewportOverlay.bottomLeft'
|
||||
);
|
||||
const bottomRightCustomization = customizationService.getCustomization(
|
||||
'cornerstoneOverlayBottomRight'
|
||||
) || cornerstoneOverlay?.bottomRightItems;
|
||||
|
||||
'viewportOverlay.bottomRight'
|
||||
);
|
||||
|
||||
const instanceNumber = useMemo(
|
||||
() =>
|
||||
@@ -177,13 +100,12 @@ function CustomizableViewportOverlay({
|
||||
return {
|
||||
displaySets,
|
||||
displaySet,
|
||||
instance: instances[imageIndex],
|
||||
instance: instances?.[imageIndex],
|
||||
instances,
|
||||
referenceInstance,
|
||||
};
|
||||
}, [viewportData, viewportId, instanceNumber, cornerstoneViewportService]);
|
||||
|
||||
|
||||
/**
|
||||
* Updating the VOI when the viewport changes its voi
|
||||
*/
|
||||
@@ -260,8 +182,8 @@ function CustomizableViewportOverlay({
|
||||
return null;
|
||||
}
|
||||
|
||||
const { customizationType } = item;
|
||||
const OverlayItemComponent = OverlayItemComponents[customizationType];
|
||||
const { inheritsFrom } = item;
|
||||
const OverlayItemComponent = OverlayItemComponents[inheritsFrom];
|
||||
|
||||
if (OverlayItemComponent) {
|
||||
return <OverlayItemComponent {...overlayItemProps} />;
|
||||
@@ -289,10 +211,6 @@ function CustomizableViewportOverlay({
|
||||
|
||||
const getContent = useCallback(
|
||||
(customization, keyPrefix) => {
|
||||
if (!customization?.items) {
|
||||
return null;
|
||||
}
|
||||
const { items } = customization;
|
||||
const props = {
|
||||
...displaySetProps,
|
||||
formatters: { formatDate: formatDICOMDate },
|
||||
@@ -305,9 +223,10 @@ function CustomizableViewportOverlay({
|
||||
|
||||
return (
|
||||
<>
|
||||
{items.map((item, index) => (
|
||||
{customization.map((item, index) => (
|
||||
<div key={`${keyPrefix}_${index}`}>
|
||||
{(!item?.condition || item.condition(props)) && _renderOverlayItem(item, props) || null}
|
||||
{((!item?.condition || item.condition(props)) && _renderOverlayItem(item, props)) ||
|
||||
null}
|
||||
</div>
|
||||
))}
|
||||
</>
|
||||
@@ -316,7 +235,6 @@ function CustomizableViewportOverlay({
|
||||
[_renderOverlayItem]
|
||||
);
|
||||
|
||||
|
||||
return (
|
||||
<ViewportOverlay
|
||||
topLeft={getContent(topLeftCustomization, 'topLeftOverlayItem')}
|
||||
@@ -335,7 +253,9 @@ function getDisplaySets(viewportData, displaySetService) {
|
||||
if (!viewportData?.data?.length) {
|
||||
return null;
|
||||
}
|
||||
const displaySets = viewportData.data.map(datum => displaySetService.getDisplaySetByUID(datum.displaySetInstanceUID)).filter(it => !!it);
|
||||
const displaySets = viewportData.data
|
||||
.map(datum => displaySetService.getDisplaySetByUID(datum.displaySetInstanceUID))
|
||||
.filter(it => !!it);
|
||||
if (!displaySets.length) {
|
||||
return null;
|
||||
}
|
||||
@@ -382,7 +302,6 @@ function _getInstanceNumberFromStack(viewportData, imageIndex) {
|
||||
return parseInt(instanceNumber);
|
||||
}
|
||||
|
||||
|
||||
// Since volume viewports can be in any view direction, they can render
|
||||
// a reconstructed image which don't have imageIds; therefore, no instance and instanceNumber
|
||||
// Here we check if viewport is in the acquisition direction and if so, we get the instanceNumber
|
||||
@@ -400,6 +319,11 @@ function _getInstanceNumberFromVolume(
|
||||
|
||||
// Todo: support fusion of acquisition plane which has instanceNumber
|
||||
const { volume } = volumes[0];
|
||||
|
||||
if (!volume) {
|
||||
return;
|
||||
}
|
||||
|
||||
const { direction, imageIds } = volume;
|
||||
|
||||
const cornerstoneViewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
@@ -443,9 +367,10 @@ function OverlayItem(props) {
|
||||
style={{ color, background }}
|
||||
title={title}
|
||||
>
|
||||
{label ? (<span className="mr-1 shrink-0">{label}</span>) : null}
|
||||
<span className="ml-1 mr-2 shrink-0">{value}</span>
|
||||
</div>);
|
||||
{label ? <span className="mr-1 shrink-0">{label}</span> : null}
|
||||
<span className="ml-0 mr-2 shrink-0">{value}</span>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
@@ -462,10 +387,10 @@ function VOIOverlayItem({ voi, customization }: OverlayItemProps) {
|
||||
className="overlay-item flex flex-row"
|
||||
style={{ color: customization?.color }}
|
||||
>
|
||||
<span className="mr-1 shrink-0">W:</span>
|
||||
<span className="ml-1 mr-2 shrink-0">{windowWidth.toFixed(0)}</span>
|
||||
<span className="mr-1 shrink-0">L:</span>
|
||||
<span className="ml-1 shrink-0">{windowCenter.toFixed(0)}</span>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.67]">W:</span>
|
||||
<span className="mr-2.5 shrink-0">{windowWidth.toFixed(0)}</span>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.67]">L:</span>
|
||||
<span className="shrink-0">{windowCenter.toFixed(0)}</span>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
@@ -479,7 +404,7 @@ function ZoomOverlayItem({ scale, customization }: OverlayItemProps) {
|
||||
className="overlay-item flex flex-row"
|
||||
style={{ color: (customization && customization.color) || undefined }}
|
||||
>
|
||||
<span className="mr-1 shrink-0">Zoom:</span>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.67]">Zoom:</span>
|
||||
<span>{scale.toFixed(2)}x</span>
|
||||
</div>
|
||||
);
|
||||
@@ -503,7 +428,7 @@ function InstanceNumberOverlayItem({
|
||||
<span>
|
||||
{instanceNumber !== undefined && instanceNumber !== null ? (
|
||||
<>
|
||||
<span className="mr-1 shrink-0">I:</span>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.67]">I:</span>
|
||||
<span>{`${instanceNumber} (${imageIndex + 1}/${numberOfSlices})`}</span>
|
||||
</>
|
||||
) : (
|
||||
@@ -522,4 +447,4 @@ CustomizableViewportOverlay.propTypes = {
|
||||
|
||||
export default CustomizableViewportOverlay;
|
||||
|
||||
export { CustomizableViewportOverlay, CornerstoneOverlay };
|
||||
export { CustomizableViewportOverlay };
|
||||
@@ -1,8 +1,7 @@
|
||||
import React, { useEffect } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { Enums, VolumeViewport3D } from '@cornerstonejs/core';
|
||||
import { utilities as csToolsUtils } from '@cornerstonejs/tools';
|
||||
import { ImageScrollbar } from '@ohif/ui';
|
||||
import { Enums, VolumeViewport3D, utilities as csUtils } from '@cornerstonejs/core';
|
||||
import { ImageScrollbar } from '@ohif/ui-next';
|
||||
|
||||
function CornerstoneImageScrollbar({
|
||||
viewportData,
|
||||
@@ -12,7 +11,9 @@ function CornerstoneImageScrollbar({
|
||||
setImageSliceData,
|
||||
scrollbarHeight,
|
||||
servicesManager,
|
||||
}: withAppTypes) {
|
||||
}: withAppTypes<{
|
||||
element: HTMLElement;
|
||||
}>) {
|
||||
const { cineService, cornerstoneViewportService } = servicesManager.services;
|
||||
|
||||
const onImageScrollbarChange = (imageIndex, viewportId) => {
|
||||
@@ -26,7 +27,7 @@ function CornerstoneImageScrollbar({
|
||||
cineService.setCine({ id: viewportId, isPlaying: false });
|
||||
}
|
||||
|
||||
csToolsUtils.jumpToSlice(viewport.element, {
|
||||
csUtils.jumpToSlice(viewport.element, {
|
||||
imageIndex,
|
||||
debounceLoading: true,
|
||||
});
|
||||
@@ -43,13 +44,17 @@ function CornerstoneImageScrollbar({
|
||||
return;
|
||||
}
|
||||
|
||||
const imageIndex = viewport.getCurrentImageIdIndex();
|
||||
const numberOfSlices = viewport.getNumberOfSlices();
|
||||
try {
|
||||
const imageIndex = viewport.getCurrentImageIdIndex();
|
||||
const numberOfSlices = viewport.getNumberOfSlices();
|
||||
|
||||
setImageSliceData({
|
||||
imageIndex: imageIndex,
|
||||
numberOfSlices,
|
||||
});
|
||||
setImageSliceData({
|
||||
imageIndex: imageIndex,
|
||||
numberOfSlices,
|
||||
});
|
||||
} catch (error) {
|
||||
console.warn(error);
|
||||
}
|
||||
}, [viewportId, viewportData]);
|
||||
|
||||
useEffect(() => {
|
||||
@@ -64,7 +69,9 @@ function CornerstoneImageScrollbar({
|
||||
|
||||
const updateIndex = event => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
if(!viewport || viewport instanceof VolumeViewport3D) return
|
||||
if (!viewport || viewport instanceof VolumeViewport3D) {
|
||||
return;
|
||||
}
|
||||
const { imageIndex, newImageIdIndex = imageIndex } = event.detail;
|
||||
const numberOfSlices = viewport.getNumberOfSlices();
|
||||
// find the index of imageId in the imageIds
|
||||
|
||||
@@ -3,19 +3,18 @@
|
||||
--marker-height: 100px;
|
||||
--scrollbar-width: 20px;
|
||||
pointer-events: none;
|
||||
font-size: 15px;
|
||||
line-height: 18px;
|
||||
}
|
||||
.ViewportOrientationMarkers .orientation-marker {
|
||||
position: absolute;
|
||||
}
|
||||
.ViewportOrientationMarkers .top-mid {
|
||||
top: 0.6rem;
|
||||
top: 0.38rem;
|
||||
left: 50%;
|
||||
}
|
||||
.ViewportOrientationMarkers .left-mid {
|
||||
top: 47%;
|
||||
left: 5px;
|
||||
left: 0.38rem;
|
||||
}
|
||||
.ViewportOrientationMarkers .right-mid {
|
||||
top: 47%;
|
||||
|
||||
@@ -1,14 +1,7 @@
|
||||
import React, { useEffect, useState, useMemo } from 'react';
|
||||
import classNames from 'classnames';
|
||||
import {
|
||||
metaData,
|
||||
Enums,
|
||||
Types,
|
||||
getEnabledElement,
|
||||
utilities as csUtils,
|
||||
} from '@cornerstonejs/core';
|
||||
import { metaData, Enums, Types, getEnabledElement } from '@cornerstonejs/core';
|
||||
import { utilities } from '@cornerstonejs/tools';
|
||||
import PropTypes from 'prop-types';
|
||||
import { vec3 } from 'gl-matrix';
|
||||
|
||||
import './ViewportOrientationMarkers.css';
|
||||
@@ -31,8 +24,9 @@ function ViewportOrientationMarkers({
|
||||
|
||||
useEffect(() => {
|
||||
const cameraModifiedListener = (evt: Types.EventTypes.CameraModifiedEvent) => {
|
||||
const { rotation, previousCamera, camera } = evt.detail;
|
||||
const { previousCamera, camera } = evt.detail;
|
||||
|
||||
const { rotation } = camera;
|
||||
if (rotation !== undefined) {
|
||||
setRotation(rotation);
|
||||
}
|
||||
@@ -74,7 +68,12 @@ function ViewportOrientationMarkers({
|
||||
return false;
|
||||
}
|
||||
|
||||
({ rowCosines, columnCosines, isDefaultValueSetForColumnCosine, isDefaultValueSetForColumnCosine } = metaData.get('imagePlaneModule', imageId) || {});
|
||||
({
|
||||
rowCosines,
|
||||
columnCosines,
|
||||
isDefaultValueSetForColumnCosine,
|
||||
isDefaultValueSetForColumnCosine,
|
||||
} = metaData.get('imagePlaneModule', imageId) || {});
|
||||
} else {
|
||||
if (!element || !getEnabledElement(element)) {
|
||||
return '';
|
||||
@@ -90,7 +89,13 @@ function ViewportOrientationMarkers({
|
||||
rowCosines = viewRight;
|
||||
}
|
||||
|
||||
if (!rowCosines || !columnCosines || rotation === undefined || isDefaultValueSetForRowCosine || isDefaultValueSetForColumnCosine) {
|
||||
if (
|
||||
!rowCosines ||
|
||||
!columnCosines ||
|
||||
rotation === undefined ||
|
||||
isDefaultValueSetForRowCosine ||
|
||||
isDefaultValueSetForColumnCosine
|
||||
) {
|
||||
return '';
|
||||
}
|
||||
|
||||
@@ -114,8 +119,8 @@ function ViewportOrientationMarkers({
|
||||
className={classNames(
|
||||
'overlay-text',
|
||||
`${m}-mid orientation-marker`,
|
||||
'text-aqua-pale',
|
||||
'text-[13px]',
|
||||
'text-highlight/65',
|
||||
'text-base',
|
||||
'leading-5'
|
||||
)}
|
||||
key={`${m}-mid orientation-marker`}
|
||||
|
||||
@@ -52,31 +52,6 @@ export function formatDICOMTime(time, strFormat = 'HH:mm:ss') {
|
||||
return moment(time, 'HH:mm:ss').format(strFormat);
|
||||
}
|
||||
|
||||
/**
|
||||
* Formats a patient name for display purposes
|
||||
*
|
||||
* @param {string} name
|
||||
* @returns {string} formatted name.
|
||||
*/
|
||||
export function formatPN(name) {
|
||||
if (!name) {
|
||||
return '';
|
||||
}
|
||||
if (typeof name === 'object') {
|
||||
name = name.Alphabetic;
|
||||
if (!name) {
|
||||
return '';
|
||||
}
|
||||
}
|
||||
|
||||
const cleaned = name
|
||||
.split('^')
|
||||
.filter(s => !!s)
|
||||
.join(', ')
|
||||
.trim();
|
||||
return cleaned === ',' || cleaned === '' ? '' : cleaned;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets compression type
|
||||
*
|
||||
|
||||
File diff suppressed because it is too large.
Load diff
@@ -0,0 +1,195 @@
|
||||
import React from 'react';
|
||||
import { useSystem } from '@ohif/core';
|
||||
import { Accordion, AccordionContent, AccordionItem, AccordionTrigger } from '@ohif/ui-next';
|
||||
import { ChevronDownIcon } from '@radix-ui/react-icons';
|
||||
|
||||
export type AccordionGrouping = {
|
||||
[name: string]: unknown;
|
||||
};
|
||||
|
||||
export type AccordionGroupProps = {
|
||||
grouping: AccordionGrouping;
|
||||
};
|
||||
|
||||
/**
|
||||
* Searches for the required type from the provided allChildren list and
|
||||
* renders them.
|
||||
*/
|
||||
export const CloneChildren = props => {
|
||||
const { group, allChildren, children, childType, defaultTypes } = props;
|
||||
|
||||
const subType = group?.subType;
|
||||
|
||||
for (const child of allChildren) {
|
||||
if (subType && child.props?.subType !== subType) {
|
||||
continue;
|
||||
}
|
||||
if (childType && child.type === childType) {
|
||||
return React.cloneElement(child, { ...props, children: child.props.children });
|
||||
}
|
||||
if (defaultTypes?.indexOf(child.type) === -1) {
|
||||
return childType({ ...props, children: child });
|
||||
}
|
||||
}
|
||||
|
||||
if (!children) {
|
||||
throw new Error(`No children defined for ${props.name} CloneChildren in group ${group?.name}`);
|
||||
}
|
||||
return React.cloneElement(children, props);
|
||||
};
|
||||
|
||||
/** Used to exclude defaults */
|
||||
const DEFAULT_TYPES = [GroupAccordion, Content, Trigger];
|
||||
|
||||
/**
|
||||
* An AccordionGroup is a component that splits a set of items into different
|
||||
* groups according to a set of grouping rules. It then puts the groups
|
||||
* into a set of accordion folds selected from the body of the accordion group,
|
||||
* looking for matching trigger/content sections according to the type definition
|
||||
* in the group with first one found being used.
|
||||
*
|
||||
* This design allows for easy customization of the component by declaring grouping
|
||||
* functions with default grouping setups and then only overriding the specific
|
||||
* children needing to be changed. See the PanelMeasurement for some example
|
||||
* possibilities of how to modify the default grouping, or the test-extension
|
||||
* measurements panel for a practical, working example.
|
||||
*/
|
||||
export function AccordionGroup(props) {
|
||||
const { grouping, items, children, sourceChildren, type } = props;
|
||||
const childProps = useSystem();
|
||||
let defaultValue = props.defaultValue;
|
||||
const groups = grouping.groupingFunction(items, grouping, childProps);
|
||||
|
||||
if (!defaultValue) {
|
||||
const defaultGroup = groups.values().find(group => group.isSelected);
|
||||
defaultValue = defaultGroup?.key || defaultGroup?.title;
|
||||
}
|
||||
|
||||
const valueArr =
|
||||
(Array.isArray(defaultValue) && defaultValue) || (defaultValue && [defaultValue]) || [];
|
||||
const sourceChildrenArr = sourceChildren ? React.Children.toArray(sourceChildren) : [];
|
||||
const childrenArr = children ? React.Children.toArray(children) : [];
|
||||
const allChildren = sourceChildrenArr.concat(childrenArr);
|
||||
|
||||
return (
|
||||
<CloneChildren
|
||||
allChildren={allChildren}
|
||||
groups={groups}
|
||||
childType={GroupAccordion}
|
||||
grouping={grouping}
|
||||
defaultValue={valueArr}
|
||||
name={'grouping ' + grouping.name}
|
||||
>
|
||||
<DefaultAccordion name="DefaultAccordion" />
|
||||
</CloneChildren>
|
||||
);
|
||||
}
|
||||
|
||||
function DefaultAccordion(props) {
|
||||
const { groups, defaultValue, grouping, allChildren, asChild } = props;
|
||||
if (!allChildren || !groups) {
|
||||
return null;
|
||||
}
|
||||
|
||||
if (Boolean(asChild)) {
|
||||
return React.cloneElement(props.children, props);
|
||||
}
|
||||
|
||||
return (
|
||||
<Accordion
|
||||
type={grouping.type || 'multiple'}
|
||||
className="text-white"
|
||||
defaultValue={defaultValue}
|
||||
>
|
||||
{[...groups.entries()].map(([key, group]) => {
|
||||
return (
|
||||
<AccordionItem
|
||||
key={group.key + '-i'}
|
||||
value={group.key}
|
||||
>
|
||||
<CloneChildren
|
||||
allChildren={allChildren}
|
||||
group={group}
|
||||
childType={Trigger}
|
||||
name="AccordionGroup.Trigger"
|
||||
/>
|
||||
<CloneChildren
|
||||
allChildren={allChildren}
|
||||
group={group}
|
||||
childType={Content}
|
||||
defaultTypes={DEFAULT_TYPES}
|
||||
name="AccordionGroup.Content"
|
||||
/>
|
||||
</AccordionItem>
|
||||
);
|
||||
})}
|
||||
</Accordion>
|
||||
);
|
||||
}
|
||||
|
||||
function GroupAccordion(props) {
|
||||
const { groups, children } = props;
|
||||
if (!groups) {
|
||||
return null;
|
||||
}
|
||||
return [...groups.values()].map(group =>
|
||||
React.cloneElement(children, {
|
||||
...props,
|
||||
children: children.props.children,
|
||||
group,
|
||||
...group,
|
||||
key: group.title,
|
||||
})
|
||||
);
|
||||
}
|
||||
|
||||
function Content(props) {
|
||||
const { children, asChild, ...childProps } = props;
|
||||
const { group } = props;
|
||||
Object.assign(childProps, group);
|
||||
|
||||
if (!group) {
|
||||
return null;
|
||||
}
|
||||
if (asChild) {
|
||||
return React.cloneElement(children, { ...group, ...props, children: children.props.children });
|
||||
}
|
||||
return (
|
||||
<AccordionContent>
|
||||
{React.cloneElement(children, { ...group, ...props, children: children.props.children })}
|
||||
</AccordionContent>
|
||||
);
|
||||
}
|
||||
|
||||
function Trigger(props) {
|
||||
const { children, asChild, ...childProps } = props;
|
||||
const { group } = props;
|
||||
Object.assign(childProps, group);
|
||||
|
||||
if (!group) {
|
||||
return null;
|
||||
}
|
||||
if (asChild) {
|
||||
return React.cloneElement(children, childProps);
|
||||
}
|
||||
return (
|
||||
<AccordionTrigger
|
||||
value={group.value}
|
||||
asChild={true}
|
||||
>
|
||||
<div>
|
||||
{React.cloneElement(children, childProps)}
|
||||
<ChevronDownIcon
|
||||
key="chevronDown"
|
||||
className="text-primary h-4 w-4 shrink-0 transition-transform duration-200"
|
||||
/>
|
||||
</div>
|
||||
</AccordionTrigger>
|
||||
);
|
||||
}
|
||||
|
||||
AccordionGroup.Content = Content;
|
||||
AccordionGroup.Trigger = Trigger;
|
||||
AccordionGroup.Accordion = GroupAccordion;
|
||||
|
||||
export default AccordionGroup;
|
||||
@@ -0,0 +1,4 @@
|
||||
export * from './AccordionGroup';
|
||||
import AccordionGroup from './AccordionGroup';
|
||||
|
||||
export default AccordionGroup;
|
||||
+1
-1
@@ -1,6 +1,6 @@
|
||||
import React, { ReactElement } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { useViewportGrid } from '@ohif/ui';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import ViewportWindowLevel from '../ViewportWindowLevel/ViewportWindowLevel';
|
||||
|
||||
const ActiveViewportWindowLevel = ({ servicesManager }: withAppTypes): ReactElement => {
|
||||
|
||||
@@ -1,7 +1,6 @@
|
||||
import React, { useCallback, useEffect, useState, useRef } from 'react';
|
||||
import { CinePlayer, useCine } from '@ohif/ui';
|
||||
import { useCine } from '@ohif/ui-next';
|
||||
import { Enums, eventTarget, cache } from '@cornerstonejs/core';
|
||||
import { Enums as StreamingEnums } from '@cornerstonejs/streaming-image-volume-loader';
|
||||
import { useAppConfig } from '@state';
|
||||
|
||||
function WrappedCinePlayer({
|
||||
@@ -54,13 +53,13 @@ function WrappedCinePlayer({
|
||||
// check if the displaySet is dynamic and set the dynamic info
|
||||
if (displaySet.isDynamicVolume) {
|
||||
const { dynamicVolumeInfo } = displaySet;
|
||||
const numTimePoints = dynamicVolumeInfo.timePoints.length;
|
||||
const numDimensionGroups = dynamicVolumeInfo.timePoints.length;
|
||||
const label = dynamicVolumeInfo.splittingTag;
|
||||
const timePointIndex = dynamicVolumeInfo.timePointIndex || 0;
|
||||
const dimensionGroupNumber = dynamicVolumeInfo.dimensionGroupNumber || 1;
|
||||
setDynamicInfo({
|
||||
volumeId: displaySet.displaySetInstanceUID,
|
||||
timePointIndex,
|
||||
numTimePoints,
|
||||
dimensionGroupNumber,
|
||||
numDimensionGroups,
|
||||
label,
|
||||
});
|
||||
} else {
|
||||
@@ -101,7 +100,7 @@ function WrappedCinePlayer({
|
||||
return;
|
||||
}
|
||||
|
||||
eventTarget.addEventListener(Enums.Events.STACK_VIEWPORT_NEW_STACK, newDisplaySetHandler);
|
||||
enabledVPElement.addEventListener(Enums.Events.VIEWPORT_NEW_IMAGE_SET, newDisplaySetHandler);
|
||||
// this doesn't makes sense that we are listening to this event on viewport element
|
||||
enabledVPElement.addEventListener(
|
||||
Enums.Events.VOLUME_VIEWPORT_NEW_VOLUME,
|
||||
@@ -111,7 +110,10 @@ function WrappedCinePlayer({
|
||||
return () => {
|
||||
cineService.setCine({ id: viewportId, isPlaying: false });
|
||||
|
||||
eventTarget.removeEventListener(Enums.Events.STACK_VIEWPORT_NEW_STACK, newDisplaySetHandler);
|
||||
enabledVPElement.removeEventListener(
|
||||
Enums.Events.VIEWPORT_NEW_IMAGE_SET,
|
||||
newDisplaySetHandler
|
||||
);
|
||||
enabledVPElement.removeEventListener(
|
||||
Enums.Events.VOLUME_VIEWPORT_NEW_VOLUME,
|
||||
newDisplaySetHandler
|
||||
@@ -158,8 +160,7 @@ function RenderCinePlayer({
|
||||
dynamicInfo: dynamicInfoProp,
|
||||
customizationService,
|
||||
}) {
|
||||
const { component: CinePlayerComponent = CinePlayer } =
|
||||
customizationService.get('cinePlayer') ?? {};
|
||||
const CinePlayerComponent = customizationService.getCustomization('cinePlayer');
|
||||
|
||||
const [dynamicInfo, setDynamicInfo] = useState(dynamicInfoProp);
|
||||
|
||||
@@ -175,20 +176,20 @@ function RenderCinePlayer({
|
||||
return;
|
||||
}
|
||||
|
||||
const handleTimePointIndexChange = evt => {
|
||||
const { volumeId, timePointIndex, numTimePoints, splittingTag } = evt.detail;
|
||||
setDynamicInfo({ volumeId, timePointIndex, numTimePoints, label: splittingTag });
|
||||
const handleDimensionGroupChange = evt => {
|
||||
const { volumeId, dimensionGroupNumber, numDimensionGroups, splittingTag } = evt.detail;
|
||||
setDynamicInfo({ volumeId, dimensionGroupNumber, numDimensionGroups, label: splittingTag });
|
||||
};
|
||||
|
||||
eventTarget.addEventListener(
|
||||
StreamingEnums.Events.DYNAMIC_VOLUME_TIME_POINT_INDEX_CHANGED,
|
||||
handleTimePointIndexChange
|
||||
Enums.Events.DYNAMIC_VOLUME_DIMENSION_GROUP_CHANGED,
|
||||
handleDimensionGroupChange
|
||||
);
|
||||
|
||||
return () => {
|
||||
eventTarget.removeEventListener(
|
||||
StreamingEnums.Events.DYNAMIC_VOLUME_TIME_POINT_INDEX_CHANGED,
|
||||
handleTimePointIndexChange
|
||||
Enums.Events.DYNAMIC_VOLUME_DIMENSION_GROUP_CHANGED,
|
||||
handleDimensionGroupChange
|
||||
);
|
||||
};
|
||||
}, [dynamicInfo]);
|
||||
@@ -198,17 +199,17 @@ function RenderCinePlayer({
|
||||
return;
|
||||
}
|
||||
|
||||
const { volumeId, timePointIndex, numTimePoints, splittingTag } = dynamicInfo || {};
|
||||
const volume = cache.getVolume(volumeId);
|
||||
volume.timePointIndex = timePointIndex;
|
||||
const { volumeId, dimensionGroupNumber, numDimensionGroups, splittingTag } = dynamicInfo || {};
|
||||
const volume = cache.getVolume(volumeId, true);
|
||||
volume.dimensionGroupNumber = dimensionGroupNumber;
|
||||
|
||||
setDynamicInfo({ volumeId, timePointIndex, numTimePoints, label: splittingTag });
|
||||
setDynamicInfo({ volumeId, dimensionGroupNumber, numDimensionGroups, label: splittingTag });
|
||||
}, []);
|
||||
|
||||
const updateDynamicInfo = useCallback(props => {
|
||||
const { volumeId, timePointIndex } = props;
|
||||
const volume = cache.getVolume(volumeId);
|
||||
volume.timePointIndex = timePointIndex;
|
||||
const { volumeId, dimensionGroupNumber } = props;
|
||||
const volume = cache.getVolume(volumeId, true);
|
||||
volume.dimensionGroupNumber = dimensionGroupNumber;
|
||||
}, []);
|
||||
|
||||
return (
|
||||
@@ -223,6 +224,7 @@ function RenderCinePlayer({
|
||||
isPlaying: false,
|
||||
});
|
||||
cineService.setIsCineEnabled(false);
|
||||
cineService.setViewportCineClosed(viewportId);
|
||||
}}
|
||||
onPlayPauseChange={isPlaying => {
|
||||
cineService.setCine({
|
||||
@@ -242,4 +244,4 @@ function RenderCinePlayer({
|
||||
);
|
||||
}
|
||||
|
||||
export default WrappedCinePlayer;
|
||||
export default WrappedCinePlayer;
|
||||
@@ -1,6 +1,8 @@
|
||||
import React, { useCallback, useEffect, useRef, useState, ReactElement } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { Button, Icon, ProgressLoadingBar } from '@ohif/ui';
|
||||
import { useSystem } from '@ohif/core';
|
||||
import { Button } from '@ohif/ui';
|
||||
import { Icons } from '@ohif/ui-next';
|
||||
import DicomFileUploader, {
|
||||
EVENTS,
|
||||
UploadStatus,
|
||||
@@ -39,6 +41,11 @@ function DicomUploadProgress({
|
||||
dicomFileUploaderArr,
|
||||
onComplete,
|
||||
}: DicomUploadProgressProps): ReactElement {
|
||||
const { servicesManager } = useSystem();
|
||||
|
||||
const ProgressLoadingBar =
|
||||
servicesManager.services.customizationService.getCustomization('ui.progressLoadingBar');
|
||||
|
||||
const [totalUploadSize] = useState(
|
||||
dicomFileUploaderArr.reduce((acc, fileUploader) => acc + fileUploader.getFileSize(), 0)
|
||||
);
|
||||
@@ -296,7 +303,7 @@ function DicomUploadProgress({
|
||||
<span
|
||||
className={classNames(
|
||||
NO_WRAP_ELLIPSIS_CLASS_NAMES,
|
||||
'text-primary-active hover:text-primary-light active:text-aqua-pale ml-auto cursor-pointer'
|
||||
'text-primary hover:text-primary-light active:text-aqua-pale ml-auto cursor-pointer'
|
||||
)}
|
||||
onClick={cancelAllUploads}
|
||||
>
|
||||
@@ -313,10 +320,10 @@ function DicomUploadProgress({
|
||||
<div className="ml-auto flex w-6 justify-center">
|
||||
{numFails > 0 && (
|
||||
<div onClick={() => setShowFailedOnly(currentShowFailedOnly => !currentShowFailedOnly)}>
|
||||
<Icon
|
||||
<Icons.ByName
|
||||
className="cursor-pointer"
|
||||
name="icon-status-alert"
|
||||
></Icon>
|
||||
></Icons.ByName>
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
|
||||
@@ -6,7 +6,7 @@ import DicomFileUploader, {
|
||||
UploadRejection,
|
||||
UploadStatus,
|
||||
} from '../../utils/DicomFileUploader';
|
||||
import { Icon } from '@ohif/ui';
|
||||
import { Icons } from '@ohif/ui-next';
|
||||
|
||||
type DicomUploadProgressItemProps = {
|
||||
dicomFileUploader: DicomFileUploader;
|
||||
@@ -54,17 +54,17 @@ const DicomUploadProgressItem = memo(
|
||||
switch (dicomFileUploader.getStatus()) {
|
||||
case UploadStatus.Success:
|
||||
return (
|
||||
<Icon
|
||||
<Icons.ByName
|
||||
name="status-tracked"
|
||||
className="text-primary-light"
|
||||
></Icon>
|
||||
/>
|
||||
);
|
||||
case UploadStatus.InProgress:
|
||||
return <Icon name="icon-transferring"></Icon>;
|
||||
return <Icons.ByName name="icon-transferring" />;
|
||||
case UploadStatus.Failed:
|
||||
return <Icon name="icon-alert-small"></Icon>;
|
||||
return <Icons.ByName name="icon-alert-small" />;
|
||||
case UploadStatus.Cancelled:
|
||||
return <Icon name="icon-alert-outline"></Icon>;
|
||||
return <Icons.ByName name="icon-alert-outline" />;
|
||||
default:
|
||||
return <></>;
|
||||
}
|
||||
@@ -88,9 +88,8 @@ const DicomUploadProgressItem = memo(
|
||||
<div className="w-10 text-right">{percentComplete}%</div>
|
||||
)}
|
||||
<div className="ml-auto flex cursor-pointer">
|
||||
<Icon
|
||||
className="text-primary-active self-center"
|
||||
name="close"
|
||||
<Icons.Close
|
||||
className="text-primary self-center"
|
||||
onClick={cancelUpload}
|
||||
/>
|
||||
</div>
|
||||
|
||||
@@ -0,0 +1,70 @@
|
||||
import React from 'react';
|
||||
import { Accordion, AccordionContent, AccordionItem } from '@ohif/ui-next';
|
||||
|
||||
import PanelAccordionTrigger from './PanelAccordionTrigger';
|
||||
import MeasurementsMenu from './MeasurementsMenu';
|
||||
import { useSystem } from '@ohif/core';
|
||||
|
||||
export function MeasurementItem(props) {
|
||||
const { index, item } = props;
|
||||
return (
|
||||
<PanelAccordionTrigger
|
||||
count={index + 1}
|
||||
text={item.toolName || item.label || item.title}
|
||||
colorHex="#f00"
|
||||
isActive={item.isSelected}
|
||||
menu={MeasurementsMenu}
|
||||
group={{ items: [item], onClick: props.onClick }}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
export default function MeasurementAccordion(props) {
|
||||
const { items } = props;
|
||||
const system = useSystem();
|
||||
|
||||
const onClick = (e, group) => {
|
||||
const { items } = group;
|
||||
// Just jump to the first measurement in the set, and mark that one as active
|
||||
// with the set of items.
|
||||
system.commandsManager.run('jumpToMeasurement', {
|
||||
uid: items[0].uid,
|
||||
displayMeasurements: items,
|
||||
group,
|
||||
});
|
||||
};
|
||||
|
||||
return (
|
||||
<Accordion
|
||||
type="multiple"
|
||||
className="flex-shrink-0 overflow-hidden"
|
||||
>
|
||||
{items.map((item, index) => {
|
||||
const { displayText: details = {} } = item;
|
||||
return (
|
||||
<AccordionItem
|
||||
key={`measurementAccordion:${item.uid}`}
|
||||
value={item.uid}
|
||||
>
|
||||
<MeasurementItem
|
||||
item={item}
|
||||
key={`measurementItem:${item.uid}`}
|
||||
index={index}
|
||||
onClick={onClick}
|
||||
/>
|
||||
<AccordionContent key={`measurementContent:${item.uid}`}>
|
||||
<div className="ml-7 px-2 py-2">
|
||||
<div className="text-secondary-foreground flex items-center gap-1 text-base leading-normal">
|
||||
{details.primary?.length > 0 &&
|
||||
details.primary.map((detail, index) => (
|
||||
<span key={`details:${item.uid}:${index}`}>{detail}</span>
|
||||
))}
|
||||
</div>
|
||||
</div>
|
||||
</AccordionContent>
|
||||
</AccordionItem>
|
||||
);
|
||||
})}
|
||||
</Accordion>
|
||||
);
|
||||
}
|
||||
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