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+14
-76
@@ -6,7 +6,7 @@ orbs:
|
||||
|
||||
defaults: &defaults
|
||||
docker:
|
||||
- image: cimg/node:20.19.0
|
||||
- image: cimg/node:20.18.1
|
||||
environment:
|
||||
TERM: xterm
|
||||
QUICK_BUILD: true
|
||||
@@ -15,13 +15,22 @@ defaults: &defaults
|
||||
commands:
|
||||
install_bun:
|
||||
steps:
|
||||
- restore_cache:
|
||||
keys:
|
||||
- bun-cache-v2-{{ arch }}-latest
|
||||
- run:
|
||||
name: Install Bun
|
||||
command: |
|
||||
curl -fsSL https://bun.sh/install | bash -s "bun-v1.2.23"
|
||||
if [ ! -d "$HOME/.bun" ]; then
|
||||
curl -fsSL https://bun.sh/install | bash
|
||||
fi
|
||||
echo 'export BUN_INSTALL="$HOME/.bun"' >> $BASH_ENV
|
||||
echo 'export PATH="$BUN_INSTALL/bin:$PATH"' >> $BASH_ENV
|
||||
source $BASH_ENV
|
||||
- save_cache:
|
||||
key: bun-cache-v2-{{ arch }}-latest
|
||||
paths:
|
||||
- ~/.bun
|
||||
|
||||
jobs:
|
||||
UNIT_TESTS:
|
||||
@@ -344,74 +353,12 @@ jobs:
|
||||
name: Export Display Variable
|
||||
command: export DISPLAY=:99
|
||||
- cypress/install:
|
||||
install-command: yarn install --frozen-lockfile --no-save
|
||||
install-command: bun install --no-save
|
||||
package-manager: yarn
|
||||
- cypress/run-tests:
|
||||
cypress-command: |
|
||||
npx wait-on@latest http://localhost:3000 && cd platform/app && npx cypress run --record --parallel
|
||||
start-command: yarn run test:data && yarn run test:e2e:serve
|
||||
|
||||
SECURITY_AUDIT:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
steps:
|
||||
- install_bun
|
||||
- checkout
|
||||
- run:
|
||||
name: 'Security Audit - High Risk Vulnerabilities'
|
||||
command: |
|
||||
git fetch origin master 2>/dev/null || true
|
||||
BASE_REF=$(git merge-base HEAD origin/master 2>/dev/null)
|
||||
if [[ -z "$BASE_REF" ]]; then
|
||||
echo "Could not determine base ref (e.g. shallow clone or no origin/master), skipping security audit."
|
||||
exit 0
|
||||
fi
|
||||
CHANGED_FILES=$(git diff --name-only origin/master...HEAD 2>/dev/null || echo "")
|
||||
if ! echo "$CHANGED_FILES" | grep -qx 'bun.lock'; then
|
||||
echo "⏭️ bun.lock unchanged - skipping security audit."
|
||||
exit 0
|
||||
fi
|
||||
echo "🔍 bun.lock changed - running bun audit for security vulnerabilities..."
|
||||
echo "Checking for HIGH-RISK vulnerabilities..."
|
||||
|
||||
# Define ignored vulnerabilities with comments
|
||||
IGNORED_VULNS=(
|
||||
"GHSA-3ppc-4f35-3m26" # CVE-2026-26996 - minimatch via itk-wasm and glob is safe because it does NOT use the CLI
|
||||
# CVE-2026-26996 - minimatch via other packages are strictly for building and CI/CD purposes; no user supplied expressions are passed to minimatch
|
||||
"GHSA-7r86-cg39-jmmj" # CVE-2026-27903 - minimatch same as above
|
||||
"GHSA-23c5-xmqv-rm74" # CVE-2026-27904 - minimatch same as above
|
||||
"GHSA-c2c7-rcm5-vvqj" # CVE-2026-33671 - picomatch is generally used for development and CI/CD purposes
|
||||
)
|
||||
|
||||
# Build ignore flags
|
||||
IGNORE_FLAGS=""
|
||||
for vuln in "${IGNORED_VULNS[@]}"; do
|
||||
IGNORE_FLAGS="$IGNORE_FLAGS --ignore=$vuln"
|
||||
done
|
||||
|
||||
if bun audit $IGNORE_FLAGS --audit-level high; then
|
||||
echo "✅ No high-risk vulnerabilities found"
|
||||
echo "🎉 Security audit passed!"
|
||||
exit 0
|
||||
else
|
||||
echo ""
|
||||
echo "❌ HIGH-RISK VULNERABILITIES DETECTED!"
|
||||
echo "======================================"
|
||||
echo ""
|
||||
echo "🔧 To fix these issues:"
|
||||
echo " 1. Run: bun audit"
|
||||
echo " 2. Review the vulnerability details"
|
||||
echo " 3. Update affected packages to secure versions"
|
||||
echo " 4. Test your changes"
|
||||
echo " 5. Re-run: bun audit --audit-level high"
|
||||
echo ""
|
||||
echo "📋 Full audit report:"
|
||||
|
||||
bun audit $IGNORE_FLAGS --audit-level low || true
|
||||
|
||||
echo ""
|
||||
echo "❌ This build cannot proceed until high-risk vulnerabilities are resolved."
|
||||
exit 1
|
||||
fi
|
||||
start-command: bun run test:data && bun run test:e2e:serve
|
||||
|
||||
DOCKER_MULTIARCH_MANIFEST:
|
||||
<<: *defaults
|
||||
@@ -502,10 +449,6 @@ workflows:
|
||||
- CYPRESS:
|
||||
name: 'Cypress Tests'
|
||||
context: cypress
|
||||
- SECURITY_AUDIT:
|
||||
filters:
|
||||
branches:
|
||||
ignore: master
|
||||
|
||||
# viewer-dev.ohif.org
|
||||
DEPLOY_MASTER:
|
||||
@@ -514,13 +457,8 @@ workflows:
|
||||
filters:
|
||||
branches:
|
||||
only: master
|
||||
# - HOLD_FOR_APPROVAL:
|
||||
# type: approval
|
||||
# requires:
|
||||
# - BUILD
|
||||
- NPM_PUBLISH:
|
||||
requires:
|
||||
# - HOLD_FOR_APPROVAL
|
||||
- BUILD
|
||||
- DOCKER_BETA_PUBLISH:
|
||||
requires:
|
||||
|
||||
@@ -2,8 +2,6 @@ version: 2
|
||||
enable-beta-ecosystems: true
|
||||
updates:
|
||||
- package-ecosystem: 'bun'
|
||||
# Disable all pull requests for bun version updates.
|
||||
open-pull-requests-limit: 0
|
||||
directory: '/'
|
||||
schedule:
|
||||
interval: 'daily'
|
||||
@@ -12,8 +10,6 @@ updates:
|
||||
prefix: 'chore'
|
||||
include: 'scope'
|
||||
- package-ecosystem: 'npm'
|
||||
# Disable all pull requests for npm version updates.
|
||||
open-pull-requests-limit: 0
|
||||
directory: '/'
|
||||
schedule:
|
||||
interval: 'daily'
|
||||
|
||||
@@ -51,29 +51,28 @@ body:
|
||||
validations:
|
||||
required: true
|
||||
|
||||
- type: textarea
|
||||
id: system_info
|
||||
- type: input
|
||||
id: os
|
||||
attributes:
|
||||
label: 'System Information'
|
||||
description: 'Please run the following command in your terminal and paste the output:'
|
||||
placeholder: |
|
||||
Run: npx envinfo --system --binaries --browsers
|
||||
|
||||
Then paste the output here. It should look something like:
|
||||
|
||||
System:
|
||||
OS: Windows 10 10.0.19042
|
||||
CPU: (8) x64 Intel(R) Core(TM) i7-9750H CPU @ 2.60GHz
|
||||
Memory: 15.89 GB / 31.74 GB
|
||||
Shell: 1.0.0 - C:\WINDOWS\System32\WindowsPowerShell\v1.0\powershell.exe
|
||||
Binaries:
|
||||
Node: 20.18.1 - C:\Program Files\nodejs\node.EXE
|
||||
Yarn: 1.22.22 - C:\Users\user\AppData\Roaming\npm\yarn.CMD
|
||||
npm: 10.8.2 - C:\Program Files\nodejs\npm.CMD
|
||||
Browsers:
|
||||
Chrome: 83.0.4103.116
|
||||
Edge: Spartan (44.19041.1266.0), Chromium (83.0.478.58)
|
||||
Firefox: 77.0.1
|
||||
label: 'OS'
|
||||
description: 'Your operating system.'
|
||||
placeholder: 'e.g., Windows 10, macOS 10.15.4'
|
||||
validations:
|
||||
required: true
|
||||
- type: input
|
||||
id: node-version
|
||||
attributes:
|
||||
label: 'Node version'
|
||||
description: 'Your Node.js version.'
|
||||
placeholder: 'e.g., 20.18.1'
|
||||
validations:
|
||||
required: true
|
||||
- type: input
|
||||
id: browser
|
||||
attributes:
|
||||
label: 'Browser'
|
||||
description: 'Your browser.'
|
||||
placeholder: 'e.g., Chrome 83.0.4103.116, Firefox 77.0.1, Safari 13.1.1'
|
||||
validations:
|
||||
required: true
|
||||
|
||||
|
||||
@@ -1,110 +0,0 @@
|
||||
name: Build and Deploy Docs
|
||||
|
||||
on:
|
||||
push:
|
||||
branches: [master]
|
||||
|
||||
env:
|
||||
ACTIONS_STEP_DEBUG: true
|
||||
|
||||
concurrency:
|
||||
group: ${{ github.workflow }}-${{ github.ref }}
|
||||
cancel-in-progress: true
|
||||
|
||||
jobs:
|
||||
build-and-deploy-docs:
|
||||
timeout-minutes: 60
|
||||
runs-on: ubuntu-latest
|
||||
# Need permissions to read actions and pull requests
|
||||
permissions:
|
||||
actions: read
|
||||
contents: read
|
||||
pull-requests: read
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: oven-sh/setup-bun@v2
|
||||
with:
|
||||
bun-version: 1.2.23
|
||||
- uses: actions/setup-node@v4
|
||||
with:
|
||||
node-version: 20 # Or your desired Node version
|
||||
|
||||
- name: Install root dependencies
|
||||
run: bun install --frozen-lockfile
|
||||
|
||||
# Removed Playwright tests and coverage generation steps
|
||||
|
||||
- name: Find PR and associated workflow run
|
||||
id: find_pr_run
|
||||
env:
|
||||
GH_TOKEN: ${{ github.token }}
|
||||
MERGE_COMMIT_SHA: ${{ github.sha }}
|
||||
run: |
|
||||
# Find the PR associated with the merge commit SHA
|
||||
# Note: This relies on the merge commit being directly pushed to main
|
||||
PR_DATA=$(gh pr list --state merged --search "$MERGE_COMMIT_SHA" --json number,headRefOid --jq '.[0]')
|
||||
if [ -z "$PR_DATA" ]; then
|
||||
echo "Could not find merged PR for commit $MERGE_COMMIT_SHA."
|
||||
# Decide how to handle - fail, or maybe generate coverage now?
|
||||
# For now, let's fail.
|
||||
exit 1
|
||||
fi
|
||||
PR_HEAD_SHA=$(echo "$PR_DATA" | jq -r '.headRefOid')
|
||||
PR_NUMBER=$(echo "$PR_DATA" | jq -r '.number')
|
||||
echo "Found PR Number: $PR_NUMBER"
|
||||
echo "Found PR Head SHA: $PR_HEAD_SHA"
|
||||
|
||||
# Find the latest workflow run ID for the playwright workflow on the PR head commit
|
||||
# Uses the workflow file name 'playwright.yml'
|
||||
# Remove the --status success flag to find any run
|
||||
RUN_ID=$(gh run list --workflow playwright.yml --commit "$PR_HEAD_SHA" --event pull_request --json databaseId --jq '.[0].databaseId')
|
||||
|
||||
if [ -z "$RUN_ID" ]; then
|
||||
echo "Could not find any 'playwright.yml' run for PR $PR_NUMBER (Head SHA: $PR_HEAD_SHA)."
|
||||
# Decide how to handle - maybe try finding the artifact from the merge commit run if that exists?
|
||||
# For now, let's fail.
|
||||
exit 1
|
||||
fi
|
||||
echo "Found Run ID: $RUN_ID"
|
||||
echo "run_id=$RUN_ID" >> $GITHUB_OUTPUT
|
||||
|
||||
- name: Download coverage artifact from PR run
|
||||
env:
|
||||
GH_TOKEN: ${{ github.token }}
|
||||
run: |
|
||||
mkdir -p ./coverage-artifact
|
||||
gh run download ${{ steps.find_pr_run.outputs.run_id }} -n coverage-report-pr --dir ./coverage-artifact
|
||||
# Check if download was successful (e.g., check if files exist)
|
||||
if [ ! -f ./coverage-artifact/base.css ]; then
|
||||
echo "Failed to download or find expected files in artifact 'coverage-report-pr' from run ${{ steps.find_pr_run.outputs.run_id }}."
|
||||
exit 1
|
||||
fi
|
||||
echo "Artifact downloaded successfully."
|
||||
|
||||
- name: Install docs dependencies
|
||||
run: cd platform/docs && bun install
|
||||
|
||||
- name: Copy coverage to docs static directory
|
||||
run: |
|
||||
# Copy files from the downloaded artifact directory
|
||||
mkdir -p platform/docs/static/coverage
|
||||
cp -r ./coverage-artifact/* platform/docs/static/coverage/
|
||||
# Copy specific asset files from the downloaded artifact root to static root
|
||||
cp ./coverage-artifact/base.css platform/docs/static/
|
||||
cp ./coverage-artifact/block-navigation.js platform/docs/static/
|
||||
cp ./coverage-artifact/prettify.css platform/docs/static/
|
||||
cp ./coverage-artifact/prettify.js platform/docs/static/
|
||||
cp ./coverage-artifact/favicon.png platform/docs/static/
|
||||
cp ./coverage-artifact/sort-arrow-sprite.png platform/docs/static/
|
||||
cp ./coverage-artifact/sorter.js platform/docs/static/
|
||||
|
||||
- name: Build docs
|
||||
run: cd platform/docs && bun run build
|
||||
|
||||
- name: Deploy to Netlify
|
||||
run: |
|
||||
cd platform/docs
|
||||
npx netlify-cli deploy --dir=./build --prod
|
||||
env:
|
||||
NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
|
||||
NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
|
||||
@@ -1,98 +0,0 @@
|
||||
# For most projects, this workflow file will not need changing; you simply need
|
||||
# to commit it to your repository.
|
||||
#
|
||||
# You may wish to alter this file to override the set of languages analyzed,
|
||||
# or to provide custom queries or build logic.
|
||||
#
|
||||
# ******** NOTE ********
|
||||
# We have attempted to detect the languages in your repository. Please check
|
||||
# the `language` matrix defined below to confirm you have the correct set of
|
||||
# supported CodeQL languages.
|
||||
#
|
||||
name: "CodeQL Advanced"
|
||||
|
||||
on:
|
||||
pull_request:
|
||||
branches: [ "main" ]
|
||||
schedule:
|
||||
- cron: '15 1 * * 5'
|
||||
|
||||
jobs:
|
||||
analyze:
|
||||
name: Analyze (${{ matrix.language }})
|
||||
# Runner size impacts CodeQL analysis time. To learn more, please see:
|
||||
# - https://gh.io/recommended-hardware-resources-for-running-codeql
|
||||
# - https://gh.io/supported-runners-and-hardware-resources
|
||||
# - https://gh.io/using-larger-runners (GitHub.com only)
|
||||
# Consider using larger runners or machines with greater resources for possible analysis time improvements.
|
||||
runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
|
||||
permissions:
|
||||
# required for all workflows
|
||||
security-events: write
|
||||
|
||||
# required to fetch internal or private CodeQL packs
|
||||
packages: read
|
||||
|
||||
# only required for workflows in private repositories
|
||||
actions: read
|
||||
contents: read
|
||||
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
include:
|
||||
- language: actions
|
||||
build-mode: none
|
||||
- language: javascript-typescript
|
||||
build-mode: none
|
||||
# CodeQL supports the following values keywords for 'language': 'actions', 'c-cpp', 'csharp', 'go', 'java-kotlin', 'javascript-typescript', 'python', 'ruby', 'swift'
|
||||
# Use `c-cpp` to analyze code written in C, C++ or both
|
||||
# Use 'java-kotlin' to analyze code written in Java, Kotlin or both
|
||||
# Use 'javascript-typescript' to analyze code written in JavaScript, TypeScript or both
|
||||
# To learn more about changing the languages that are analyzed or customizing the build mode for your analysis,
|
||||
# see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/customizing-your-advanced-setup-for-code-scanning.
|
||||
# If you are analyzing a compiled language, you can modify the 'build-mode' for that language to customize how
|
||||
# your codebase is analyzed, see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages
|
||||
steps:
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v4
|
||||
|
||||
# Add any setup steps before running the `github/codeql-action/init` action.
|
||||
# This includes steps like installing compilers or runtimes (`actions/setup-node`
|
||||
# or others). This is typically only required for manual builds.
|
||||
# - name: Setup runtime (example)
|
||||
# uses: actions/setup-example@v1
|
||||
|
||||
# Initializes the CodeQL tools for scanning.
|
||||
- name: Initialize CodeQL
|
||||
uses: github/codeql-action/init@v3
|
||||
with:
|
||||
languages: ${{ matrix.language }}
|
||||
build-mode: ${{ matrix.build-mode }}
|
||||
# If you wish to specify custom queries, you can do so here or in a config file.
|
||||
# By default, queries listed here will override any specified in a config file.
|
||||
# Prefix the list here with "+" to use these queries and those in the config file.
|
||||
|
||||
# For more details on CodeQL's query packs, refer to: https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
|
||||
# queries: security-extended,security-and-quality
|
||||
|
||||
# If the analyze step fails for one of the languages you are analyzing with
|
||||
# "We were unable to automatically build your code", modify the matrix above
|
||||
# to set the build mode to "manual" for that language. Then modify this step
|
||||
# to build your code.
|
||||
# ℹ️ Command-line programs to run using the OS shell.
|
||||
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
|
||||
- if: matrix.build-mode == 'manual'
|
||||
shell: bash
|
||||
run: |
|
||||
echo 'If you are using a "manual" build mode for one or more of the' \
|
||||
'languages you are analyzing, replace this with the commands to build' \
|
||||
'your code, for example:'
|
||||
echo ' make bootstrap'
|
||||
echo ' make release'
|
||||
exit 1
|
||||
|
||||
- name: Perform CodeQL Analysis
|
||||
uses: github/codeql-action/analyze@v3
|
||||
with:
|
||||
category: "/language:${{matrix.language}}"
|
||||
@@ -1,209 +1,75 @@
|
||||
name: Playwright Tests
|
||||
on:
|
||||
push:
|
||||
branches: [main, master]
|
||||
pull_request:
|
||||
branches: [master, release/*]
|
||||
workflow_dispatch:
|
||||
inputs:
|
||||
cs3d_ref:
|
||||
description: >-
|
||||
CS3D branch (e.g. main, origin:feat/foo) or version (e.g. 4.18.2, 4.19+, 4.x). Only used
|
||||
when ohif-integration label is present or via workflow_dispatch.
|
||||
required: false
|
||||
default: '4.19+'
|
||||
|
||||
permissions:
|
||||
contents: read
|
||||
pull-requests: read
|
||||
issues: read
|
||||
|
||||
concurrency:
|
||||
group: ${{ github.workflow }}-${{ github.ref }}
|
||||
cancel-in-progress: true
|
||||
|
||||
branches: [main, master]
|
||||
jobs:
|
||||
playwright-tests:
|
||||
timeout-minutes: 120
|
||||
runs-on: self-hosted
|
||||
timeout-minutes: 60
|
||||
runs-on: ubuntu-latest
|
||||
container:
|
||||
image: mcr.microsoft.com/playwright:v1.51.1-noble
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
node-version: [20]
|
||||
shardIndex: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10]
|
||||
shardTotal: [10]
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- name: Install unzip
|
||||
run: apt-get update && apt-get install -y unzip
|
||||
- uses: oven-sh/setup-bun@v2
|
||||
with:
|
||||
bun-version: 1.2.23
|
||||
- uses: actions/setup-node@v4
|
||||
with:
|
||||
node-version: ${{ matrix.node-version }}
|
||||
- name: Install Yarn
|
||||
run: npm install -g yarn@1.22.22
|
||||
|
||||
# ── CS3D integration: detect label and ref type ──────────────────────
|
||||
- name: Check for CS3D integration label
|
||||
id: cs3d-check
|
||||
run: bash .scripts/ci/cs3d-check-integration.sh
|
||||
env:
|
||||
GH_TOKEN: ${{ github.token }}
|
||||
EVENT_NAME: ${{ github.event_name }}
|
||||
CS3D_REF_INPUT: ${{ github.event.inputs.cs3d_ref || '4.19+' }}
|
||||
REPO: ${{ github.repository }}
|
||||
PR_NUMBER: ${{ github.event.pull_request.number }}
|
||||
|
||||
- name: Detect CS3D ref type
|
||||
id: cs3d-ref
|
||||
if: steps.cs3d-check.outputs.enabled == 'true'
|
||||
run: |
|
||||
REF="${CS3D_REF}"
|
||||
if [[ "$REF" =~ ^[0-9]+\.[0-9x]+\+?(\.[0-9x]+)?(-[a-zA-Z0-9._]+)?$ ]]; then
|
||||
echo "type=version" >> "$GITHUB_OUTPUT"
|
||||
RESOLVED=$(node .scripts/cs3d-resolve-version.mjs "$REF")
|
||||
echo "version=$RESOLVED" >> "$GITHUB_OUTPUT"
|
||||
echo "::notice::CS3D version: $REF -> $RESOLVED"
|
||||
else
|
||||
echo "type=branch" >> "$GITHUB_OUTPUT"
|
||||
echo "::notice::CS3D branch: $REF"
|
||||
fi
|
||||
env:
|
||||
CS3D_REF: ${{ steps.cs3d-check.outputs.cs3d_ref }}
|
||||
|
||||
# ── CS3D branch path: clone and build before OHIF install ───────────
|
||||
- name: Clone CS3D
|
||||
if: steps.cs3d-check.outputs.enabled == 'true' && steps.cs3d-ref.outputs.type == 'branch'
|
||||
run: |
|
||||
REF="${CS3D_REF}"
|
||||
if [[ "$REF" == *:* ]]; then
|
||||
REPO="https://github.com/${REF%%:*}/cornerstone3D.git"
|
||||
BRANCH="${REF#*:}"
|
||||
else
|
||||
REPO="https://github.com/cornerstonejs/cornerstone3D.git"
|
||||
BRANCH="$REF"
|
||||
fi
|
||||
echo "::notice::Cloning CS3D from $REPO branch $BRANCH"
|
||||
git clone --depth 1 --branch "$BRANCH" "$REPO" libs/@cornerstonejs
|
||||
env:
|
||||
CS3D_REF: ${{ steps.cs3d-check.outputs.cs3d_ref }}
|
||||
|
||||
- name: Install & Build CS3D
|
||||
if: steps.cs3d-check.outputs.enabled == 'true' && steps.cs3d-ref.outputs.type == 'branch'
|
||||
working-directory: libs/@cornerstonejs
|
||||
run: bun install --frozen-lockfile && bun run build:esm
|
||||
|
||||
# ── Common: install OHIF dependencies ───────────────────────────────
|
||||
node-version: 20
|
||||
- name: Install dependencies
|
||||
run: bun install --frozen-lockfile
|
||||
|
||||
# ── CS3D branch path: link packages after OHIF install ──────────────
|
||||
- name: Link CS3D packages
|
||||
if: steps.cs3d-check.outputs.enabled == 'true' && steps.cs3d-ref.outputs.type == 'branch'
|
||||
working-directory: libs/@cornerstonejs
|
||||
run: node scripts/link-ohif-cornerstone-node-modules.mjs "$GITHUB_WORKSPACE"
|
||||
|
||||
# ── CS3D version path: update versions after OHIF install ───────────
|
||||
- name: Set CS3D version
|
||||
if: steps.cs3d-check.outputs.enabled == 'true' && steps.cs3d-ref.outputs.type == 'version'
|
||||
run: |
|
||||
node .scripts/cs3d-set-version.mjs "${CS3D_VERSION}"
|
||||
bun install --config=./bunfig.update-lockfile.toml
|
||||
env:
|
||||
CS3D_VERSION: ${{ steps.cs3d-ref.outputs.version }}
|
||||
|
||||
# ── Common: run tests ───────────────────────────────────────────────
|
||||
- name: Install Playwright browsers
|
||||
run: npx playwright install
|
||||
- name: Set up Git safe directory
|
||||
run: git config --global --add safe.directory /__w/Viewers/Viewers
|
||||
- name: Run Playwright tests
|
||||
run: |
|
||||
export NODE_OPTIONS="--max_old_space_size=10192"
|
||||
bun run test:e2e:coverage
|
||||
NODE_OPTIONS="--max_old_space_size=8192" TEST_ENV=true bun x playwright test --shard=${{ matrix.shardIndex }}/${{ matrix.shardTotal }}
|
||||
|
||||
# ── Common: collect test results and coverage ───────────────────────
|
||||
- name: Create directory of test results
|
||||
if: ${{ !cancelled() }}
|
||||
run: |
|
||||
mkdir -p packaged-test-results
|
||||
cp -r ./tests/test-results packaged-test-results/ || true
|
||||
cp ./tests/playwright-report.json packaged-test-results/ || true
|
||||
- name: Upload directory of test results artifact
|
||||
- name: Upload blob report to GitHub Actions Artifacts
|
||||
if: ${{ !cancelled() }}
|
||||
uses: actions/upload-artifact@v4
|
||||
with:
|
||||
name: playwright-results
|
||||
path: packaged-test-results/
|
||||
retention-days: 5
|
||||
- name: create the coverage report
|
||||
run: |
|
||||
bun nyc report --reporter=lcov --reporter=text
|
||||
- name: Upload the coverage report to GitHub Actions Artifacts
|
||||
if: ${{ !cancelled() }}
|
||||
uses: actions/upload-artifact@v4
|
||||
with:
|
||||
name: coverage-report-pr
|
||||
path: coverage
|
||||
retention-days: 3
|
||||
name: blob-report-${{ matrix.shardIndex }}
|
||||
path: blob-report
|
||||
retention-days: 1
|
||||
|
||||
# ── CS3D: build and deploy preview to Netlify ───────────────────────
|
||||
- name: Log build context (OHIF/CS3D branch and version for build diagnosis)
|
||||
if: steps.cs3d-check.outputs.enabled == 'true'
|
||||
run: |
|
||||
if [[ "$CS3D_REF_TYPE" == "branch" ]]; then
|
||||
echo "::notice::Build type: ohif-downstream | OHIF: ${{ github.repository }}@${{ github.ref }} (${{ github.sha }}) | CS3D: branch ${{ steps.cs3d-check.outputs.cs3d_ref }}"
|
||||
else
|
||||
echo "::notice::Build type: ohif-upstream | OHIF: ${{ github.repository }}@${{ github.ref }} (${{ github.sha }}) | CS3D: version ${{ steps.cs3d-ref.outputs.version }}"
|
||||
fi
|
||||
node .scripts/log-build-context.mjs
|
||||
env:
|
||||
BUILD_TYPE: ${{ steps.cs3d-ref.outputs.type == 'branch' && 'ohif-downstream' || 'ohif-upstream' }}
|
||||
CS3D_REF_TYPE: ${{ steps.cs3d-ref.outputs.type }}
|
||||
|
||||
- name: Build OHIF viewer (CS3D preview)
|
||||
if: steps.cs3d-check.outputs.enabled == 'true'
|
||||
run: bun run build:ci
|
||||
|
||||
- name: Deploy CS3D preview to Netlify
|
||||
if: steps.cs3d-check.outputs.enabled == 'true'
|
||||
run: |
|
||||
RESULT=$(npx netlify-cli deploy --dir=platform/app/dist --alias="cs3d-pr-${PR_NUM}" --json --filter=@ohif/app) || {
|
||||
echo "::error::Netlify deploy command failed"
|
||||
exit 1
|
||||
}
|
||||
URL=$(echo "$RESULT" | jq -r '.deploy_url')
|
||||
if [[ -z "$URL" || "$URL" == "null" ]]; then
|
||||
echo "::error::Netlify deploy did not return a valid URL"
|
||||
echo "$RESULT"
|
||||
exit 1
|
||||
fi
|
||||
echo "::notice::CS3D preview deployed: $URL"
|
||||
env:
|
||||
NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
|
||||
NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
|
||||
PR_NUM: ${{ github.event.pull_request.number || 'manual' }}
|
||||
|
||||
# ── CS3D: log results ───────────────────────────────────────────────
|
||||
- name: Log CS3D build used
|
||||
if: steps.cs3d-check.outputs.enabled == 'true'
|
||||
run: |
|
||||
if [[ "$CS3D_REF_TYPE" == "branch" ]]; then
|
||||
echo "::notice::CS3D integration PASSED with branch ${CS3D_REF} (linked from libs/@cornerstonejs)"
|
||||
else
|
||||
echo "::notice::CS3D integration PASSED with @cornerstonejs/*@${CS3D_VERSION}"
|
||||
fi
|
||||
env:
|
||||
CS3D_REF_TYPE: ${{ steps.cs3d-ref.outputs.type }}
|
||||
CS3D_REF: ${{ steps.cs3d-check.outputs.cs3d_ref }}
|
||||
CS3D_VERSION: ${{ steps.cs3d-ref.outputs.version }}
|
||||
|
||||
# ── Separate job: block merge when using a CS3D branch ─────────────
|
||||
cs3d-branch-merge-guard:
|
||||
name: "CS3D Branch Merge Guard"
|
||||
merge-reports:
|
||||
if: ${{ !cancelled() }}
|
||||
needs: [playwright-tests]
|
||||
runs-on: ubuntu-latest
|
||||
timeout-minutes: 5
|
||||
container:
|
||||
image: mcr.microsoft.com/playwright:v1.48.1-focal
|
||||
steps:
|
||||
- name: Install unzip
|
||||
run: apt-get update && apt-get install -y unzip
|
||||
- uses: oven-sh/setup-bun@v2
|
||||
- uses: actions/checkout@v4
|
||||
- name: Check for CS3D branch usage
|
||||
run: bash .scripts/ci/cs3d-branch-merge-guard.sh
|
||||
env:
|
||||
GH_TOKEN: ${{ github.token }}
|
||||
EVENT_NAME: ${{ github.event_name }}
|
||||
CS3D_REF_INPUT: ${{ github.event.inputs.cs3d_ref || '4.19+' }}
|
||||
REPO: ${{ github.repository }}
|
||||
PR_NUMBER: ${{ github.event.pull_request.number }}
|
||||
- uses: actions/setup-node@v4
|
||||
with:
|
||||
node-version: 20
|
||||
- name: Install dependencies
|
||||
run: bun install --frozen-lockfile
|
||||
- name: Set up Git safe directory
|
||||
run: git config --global --add safe.directory /__w/Viewers/Viewers
|
||||
- name: Download blob reports from GitHub Actions Artifacts
|
||||
uses: actions/download-artifact@v4
|
||||
with:
|
||||
path: all-blob-reports
|
||||
pattern: blob-report-*
|
||||
merge-multiple: true
|
||||
|
||||
- name: Merge into HTML Report
|
||||
run: bun x playwright merge-reports --reporter html ./all-blob-reports
|
||||
|
||||
- name: Upload HTML report
|
||||
uses: actions/upload-artifact@v4
|
||||
with:
|
||||
name: html-report--attempt-${{ github.run_attempt }}
|
||||
path: playwright-report
|
||||
retention-days: 14
|
||||
+1
-16
@@ -1,7 +1,7 @@
|
||||
# Packages
|
||||
node_modules
|
||||
.cursor/
|
||||
.nyc_output/
|
||||
|
||||
# Output
|
||||
build
|
||||
dist
|
||||
@@ -13,7 +13,6 @@ coverage/
|
||||
.yarn/
|
||||
.nx/
|
||||
addOns/yarn.lock
|
||||
playwright-report/
|
||||
|
||||
# YALC (for Erik)
|
||||
.yalc
|
||||
@@ -58,17 +57,3 @@ tests/test-results/
|
||||
tests/playwright-report/
|
||||
/blob-report/
|
||||
/playwright/.cache/
|
||||
|
||||
**/.claude/settings.local.json
|
||||
|
||||
# cornerstone3D local linking
|
||||
libs/
|
||||
|
||||
# Backup files
|
||||
*~
|
||||
|
||||
# cornerstone3D local linking
|
||||
libs/
|
||||
link-cs3d.js
|
||||
unlink-cs3d.js
|
||||
auth.json
|
||||
@@ -19,7 +19,7 @@ echo 'Web application built and copied'
|
||||
|
||||
# Build && Move Docusaurus Output (for the docs themselves)
|
||||
cd platform/docs
|
||||
yarn install --frozen-lockfile
|
||||
yarn install
|
||||
yarn run build
|
||||
cd ../..
|
||||
mkdir -p ./.netlify/www/docs
|
||||
|
||||
@@ -10,6 +10,6 @@
|
||||
"deploy": "netlify deploy --prod --dir ./../platform/app/dist"
|
||||
},
|
||||
"devDependencies": {
|
||||
"netlify-cli": "2.21.0"
|
||||
"netlify-cli": "^2.21.0"
|
||||
}
|
||||
}
|
||||
-24
@@ -1,24 +0,0 @@
|
||||
{
|
||||
"extends": "@istanbuljs/nyc-config-typescript",
|
||||
"instrument": true,
|
||||
"sourceMap": true,
|
||||
"cache": false,
|
||||
"all": true,
|
||||
"include": [
|
||||
"platform/*/src/**/*.ts",
|
||||
"platform/*/src/**/*.js",
|
||||
"extensions/*/src/**/*.ts",
|
||||
"extensions/*/src/**/*.js",
|
||||
"modes/*/src/**/*.ts",
|
||||
"modes/*/src/**/*.js"
|
||||
],
|
||||
"exclude": [
|
||||
"**/*.spec.ts",
|
||||
"**/*.test.ts",
|
||||
"**/test/**",
|
||||
"**/tests/**",
|
||||
"**/examples/**",
|
||||
"**/stories/**",
|
||||
"platform/docs/**"
|
||||
]
|
||||
}
|
||||
@@ -1,42 +0,0 @@
|
||||
#!/usr/bin/env bash
|
||||
# CS3D branch merge guard: blocks merge when tests ran against a CS3D branch (not a version).
|
||||
# Exits 0 when merge is allowed or guard is skipped; exits 1 when merge must be blocked.
|
||||
#
|
||||
# Required env: GH_TOKEN, EVENT_NAME, REPO, PR_NUMBER
|
||||
# Optional env: CS3D_REF_INPUT (for workflow_dispatch, default 4.19+)
|
||||
|
||||
set -e
|
||||
|
||||
if [[ "$EVENT_NAME" == "workflow_dispatch" ]]; then
|
||||
echo "::notice::workflow_dispatch — no merge to block, skipping guard."
|
||||
exit 0
|
||||
elif [[ "$EVENT_NAME" == "pull_request" ]]; then
|
||||
LABELS=$(gh api "repos/${REPO}/issues/${PR_NUMBER}/labels" --jq '.[].name')
|
||||
if echo "$LABELS" | grep -q "ohif-integration"; then
|
||||
ENABLED=true
|
||||
CS3D_REF=$(gh api "repos/${REPO}/pulls/${PR_NUMBER}" --jq '.body' \
|
||||
| sed -n 's/^[[:space:]]*CS3D_REF:[[:space:]]*\([^[:space:]]*\).*/\1/p' | head -1)
|
||||
if [[ -z "$CS3D_REF" ]]; then
|
||||
CS3D_REF="4.19+"
|
||||
fi
|
||||
else
|
||||
ENABLED=false
|
||||
fi
|
||||
else
|
||||
ENABLED=false
|
||||
fi
|
||||
|
||||
if [[ "$ENABLED" != "true" ]]; then
|
||||
echo "::notice::No ohif-integration label — skipping merge guard."
|
||||
exit 0
|
||||
fi
|
||||
|
||||
# Check if the ref is a branch (not a version)
|
||||
if [[ "$CS3D_REF" =~ ^[0-9]+\.[0-9x]+\+?(\.[0-9x]+)?(-[a-zA-Z0-9._]+)?$ ]]; then
|
||||
echo "::notice::CS3D ref '$CS3D_REF' is a version — merge allowed."
|
||||
exit 0
|
||||
fi
|
||||
|
||||
echo "::error::Tests ran against CS3D branch '${CS3D_REF}' — this build cannot be merged."
|
||||
echo "::error::Re-run with a published CS3D version (e.g. 4.19+) before merging."
|
||||
exit 1
|
||||
@@ -1,29 +0,0 @@
|
||||
#!/usr/bin/env bash
|
||||
# CS3D integration check: detects ohif-integration label and parses CS3D_REF.
|
||||
# Writes to GITHUB_OUTPUT: enabled (true|false), cs3d_ref (when enabled).
|
||||
#
|
||||
# Required env: GH_TOKEN, EVENT_NAME, REPO, PR_NUMBER, GITHUB_OUTPUT
|
||||
# Optional env: CS3D_REF_INPUT (for workflow_dispatch, default 4.19+)
|
||||
|
||||
set -e
|
||||
|
||||
if [[ "$EVENT_NAME" == "workflow_dispatch" ]]; then
|
||||
echo "enabled=true" >> "$GITHUB_OUTPUT"
|
||||
echo "cs3d_ref=${CS3D_REF_INPUT:-4.19+}" >> "$GITHUB_OUTPUT"
|
||||
elif [[ "$EVENT_NAME" == "pull_request" ]]; then
|
||||
LABELS=$(gh api "repos/${REPO}/issues/${PR_NUMBER}/labels" --jq '.[].name')
|
||||
if echo "$LABELS" | grep -q "ohif-integration"; then
|
||||
echo "enabled=true" >> "$GITHUB_OUTPUT"
|
||||
REF=$(gh api "repos/${REPO}/pulls/${PR_NUMBER}" --jq '.body' \
|
||||
| sed -n 's/^[[:space:]]*CS3D_REF:[[:space:]]*\([^[:space:]]*\).*/\1/p' | head -1)
|
||||
if [[ -z "$REF" ]]; then
|
||||
REF="4.19+"
|
||||
fi
|
||||
echo "cs3d_ref=${REF}" >> "$GITHUB_OUTPUT"
|
||||
echo "::notice::CS3D ref from PR body: ${REF}"
|
||||
else
|
||||
echo "enabled=false" >> "$GITHUB_OUTPUT"
|
||||
fi
|
||||
else
|
||||
echo "enabled=false" >> "$GITHUB_OUTPUT"
|
||||
fi
|
||||
@@ -1,55 +0,0 @@
|
||||
import fs from 'node:fs';
|
||||
import path from 'node:path';
|
||||
import { execSync } from 'node:child_process';
|
||||
|
||||
const workflowPath = path.resolve(
|
||||
process.cwd(),
|
||||
'libs',
|
||||
'@cornerstonejs',
|
||||
'.github',
|
||||
'workflows',
|
||||
'ohif-downstream.yml'
|
||||
);
|
||||
|
||||
if (!fs.existsSync(workflowPath)) {
|
||||
console.error(`[cs3d:check] Workflow file not found: ${workflowPath}`);
|
||||
process.exit(1);
|
||||
}
|
||||
|
||||
const workflowText = fs.readFileSync(workflowPath, 'utf8');
|
||||
const ohifRefMatch = workflowText.match(/^\s*OHIF_REF:\s*["']?([^"'\r\n]+)["']?\s*$/m);
|
||||
|
||||
if (!ohifRefMatch) {
|
||||
console.error('[cs3d:check] Could not find OHIF_REF in ohif-downstream workflow.');
|
||||
process.exit(1);
|
||||
}
|
||||
|
||||
const expectedBranch = ohifRefMatch[1].trim();
|
||||
let currentBranch = '';
|
||||
|
||||
try {
|
||||
currentBranch = execSync('git rev-parse --abbrev-ref HEAD', {
|
||||
cwd: process.cwd(),
|
||||
encoding: 'utf8',
|
||||
}).trim();
|
||||
} catch (error) {
|
||||
console.error('[cs3d:check] Failed to determine current git branch.');
|
||||
process.exit(1);
|
||||
}
|
||||
|
||||
if (currentBranch !== expectedBranch) {
|
||||
console.error(
|
||||
`[cs3d:check] Branch mismatch: current='${currentBranch}', expected='${expectedBranch}' from ${path.relative(
|
||||
process.cwd(),
|
||||
workflowPath
|
||||
)}`
|
||||
);
|
||||
process.exit(1);
|
||||
}
|
||||
|
||||
console.log(
|
||||
`[cs3d:check] OK: current branch '${currentBranch}' matches OHIF_REF in ${path.relative(
|
||||
process.cwd(),
|
||||
workflowPath
|
||||
)}`
|
||||
);
|
||||
@@ -1,63 +0,0 @@
|
||||
#!/usr/bin/env node
|
||||
|
||||
/**
|
||||
* Resolves a version pattern to a concrete npm version of @cornerstonejs/core.
|
||||
*
|
||||
* Patterns:
|
||||
* 4.18.2 -> 4.18.2 (exact, returned as-is)
|
||||
* 4.18.2-beta.3 -> 4.18.2-beta.3 (exact prerelease)
|
||||
* 4.x -> latest 4.* from npm
|
||||
* 4.17.x -> latest 4.17.* from npm
|
||||
* 4.19+ -> latest >=4.19.0 <5.0.0-0 from npm (4.19 and later, same major)
|
||||
*
|
||||
* Prints the resolved version to stdout.
|
||||
*/
|
||||
|
||||
import { execSync } from 'child_process';
|
||||
|
||||
const pattern = process.argv[2];
|
||||
if (!pattern) {
|
||||
console.error('Usage: cs3d-resolve-version.mjs <pattern>');
|
||||
console.error(' e.g. 4.x, 4.17.x, 4.19+, 4.18.2, 4.18.2-beta.3');
|
||||
process.exit(1);
|
||||
}
|
||||
|
||||
// Exact version (no wildcard or range) — pass through unchanged
|
||||
if (!pattern.includes('x') && !pattern.endsWith('+')) {
|
||||
console.log(pattern);
|
||||
process.exit(0);
|
||||
}
|
||||
|
||||
// Convert "M.m+" to npm semver range ">=M.m.0 <(M+1).0.0-0"
|
||||
let npmRange = pattern;
|
||||
const plusMatch = pattern.match(/^(\d+)\.(\d+)\+$/);
|
||||
if (plusMatch) {
|
||||
const major = Number(plusMatch[1]);
|
||||
const minor = Number(plusMatch[2]);
|
||||
npmRange = `>=${major}.${minor}.0 <${major + 1}.0.0-0`;
|
||||
}
|
||||
|
||||
try {
|
||||
// Let npm resolve the range: @package@<range> → concrete version
|
||||
const raw = execSync(`npm view @cornerstonejs/core@"${npmRange}" version --json`, {
|
||||
encoding: 'utf8',
|
||||
timeout: 30_000,
|
||||
});
|
||||
|
||||
const resolved = JSON.parse(raw);
|
||||
if (!resolved) {
|
||||
console.error(`npm returned no version when resolving @cornerstonejs/core@${npmRange}`);
|
||||
process.exit(1);
|
||||
}
|
||||
|
||||
// npm may return an array of versions for ranges; pick the latest (last) one
|
||||
const version = Array.isArray(resolved) ? resolved[resolved.length - 1] : resolved;
|
||||
console.log(version);
|
||||
} catch (err) {
|
||||
const message =
|
||||
(err && (err.stderr?.toString() || err.message || String(err))) ||
|
||||
`Unknown error resolving @cornerstonejs/core@${pattern}`;
|
||||
console.error(`Failed to resolve @cornerstonejs/core version for pattern "${pattern}":`);
|
||||
console.error(message);
|
||||
process.exit(1);
|
||||
}
|
||||
@@ -1,130 +0,0 @@
|
||||
#!/usr/bin/env node
|
||||
|
||||
/**
|
||||
* Updates all @cornerstonejs/* package versions across the OHIF workspace.
|
||||
*
|
||||
* Usage: node .scripts/cs3d-set-version.mjs <version>
|
||||
*
|
||||
* Only updates the 8 main CS3D packages (not codec packages):
|
||||
* adapters, ai, core, dicom-image-loader, labelmap-interpolation,
|
||||
* nifti-volume-loader, polymorphic-segmentation, tools
|
||||
*/
|
||||
|
||||
import { readFileSync, writeFileSync, existsSync, readdirSync } from 'fs';
|
||||
import { resolve, dirname, join } from 'path';
|
||||
import { fileURLToPath } from 'url';
|
||||
|
||||
const __dirname = dirname(fileURLToPath(import.meta.url));
|
||||
const rootDir = resolve(__dirname, '..');
|
||||
|
||||
const version = process.argv[2];
|
||||
if (!version) {
|
||||
console.error('Usage: cs3d-set-version.mjs <version>');
|
||||
console.error(' e.g. 4.18.2, 4.19.0-beta.1');
|
||||
process.exit(1);
|
||||
}
|
||||
|
||||
// The 8 CS3D packages that are built from source (not codecs)
|
||||
const CS3D_PACKAGES = [
|
||||
'@cornerstonejs/adapters',
|
||||
'@cornerstonejs/ai',
|
||||
'@cornerstonejs/core',
|
||||
'@cornerstonejs/dicom-image-loader',
|
||||
'@cornerstonejs/labelmap-interpolation',
|
||||
'@cornerstonejs/nifti-volume-loader',
|
||||
'@cornerstonejs/polymorphic-segmentation',
|
||||
'@cornerstonejs/tools',
|
||||
];
|
||||
|
||||
// Read root package.json to get workspace globs
|
||||
const rootPkgPath = resolve(rootDir, 'package.json');
|
||||
const rootPkg = JSON.parse(readFileSync(rootPkgPath, 'utf8'));
|
||||
const workspaceGlobs = rootPkg.workspaces?.packages || rootPkg.workspaces || [];
|
||||
|
||||
// Collect all package.json paths from workspace globs
|
||||
function findWorkspacePackageJsons() {
|
||||
const paths = [rootPkgPath]; // include root
|
||||
|
||||
for (const pattern of workspaceGlobs) {
|
||||
const parts = pattern.split('/');
|
||||
let searchDir = rootDir;
|
||||
let hasWildcard = false;
|
||||
|
||||
for (const part of parts) {
|
||||
if (part === '*') {
|
||||
hasWildcard = true;
|
||||
break;
|
||||
}
|
||||
searchDir = join(searchDir, part);
|
||||
}
|
||||
|
||||
if (hasWildcard) {
|
||||
try {
|
||||
const entries = readdirSync(searchDir, { withFileTypes: true });
|
||||
for (const entry of entries) {
|
||||
if (entry.isDirectory()) {
|
||||
const pkgJson = join(searchDir, entry.name, 'package.json');
|
||||
if (existsSync(pkgJson)) {
|
||||
paths.push(pkgJson);
|
||||
}
|
||||
}
|
||||
}
|
||||
} catch {
|
||||
// directory doesn't exist, skip
|
||||
}
|
||||
} else {
|
||||
const pkgJson = join(rootDir, pattern, 'package.json');
|
||||
if (existsSync(pkgJson)) {
|
||||
paths.push(pkgJson);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return paths;
|
||||
}
|
||||
|
||||
// Update a dependencies object, returning count of changes
|
||||
function updateDeps(deps, targetVersion) {
|
||||
let count = 0;
|
||||
if (!deps) return count;
|
||||
for (const pkg of CS3D_PACKAGES) {
|
||||
if (pkg in deps && deps[pkg] !== targetVersion) {
|
||||
deps[pkg] = targetVersion;
|
||||
count++;
|
||||
}
|
||||
}
|
||||
return count;
|
||||
}
|
||||
|
||||
const pkgPaths = findWorkspacePackageJsons();
|
||||
let totalChanges = 0;
|
||||
|
||||
for (const pkgPath of pkgPaths) {
|
||||
const content = readFileSync(pkgPath, 'utf8');
|
||||
const pkg = JSON.parse(content);
|
||||
let changes = 0;
|
||||
|
||||
changes += updateDeps(pkg.dependencies, version);
|
||||
changes += updateDeps(pkg.devDependencies, version);
|
||||
changes += updateDeps(pkg.peerDependencies, version);
|
||||
changes += updateDeps(pkg.resolutions, version);
|
||||
|
||||
if (changes > 0) {
|
||||
// Preserve original formatting (detect indent)
|
||||
const indent = content.match(/^(\s+)/m)?.[1] || ' ';
|
||||
writeFileSync(pkgPath, JSON.stringify(pkg, null, indent) + '\n');
|
||||
const rel = pkgPath.replace(rootDir + '/', '').replace(rootDir + '\\', '');
|
||||
console.log(` Updated ${rel} (${changes} packages)`);
|
||||
totalChanges += changes;
|
||||
}
|
||||
}
|
||||
|
||||
console.log(
|
||||
`\nDone: ${totalChanges} version(s) updated to ${version} across ${pkgPaths.length} package files.`
|
||||
);
|
||||
console.log(
|
||||
'This step changes package.json; the following install must not use a frozen Bun lockfile ' +
|
||||
'(OHIF+CS3D combined “version” CI does: `bun install --config=./bunfig.update-lockfile.toml`). ' +
|
||||
'Other installs stay frozen. Locally after this script, use that bun command and/or ' +
|
||||
'`bun run install:update-lockfile` when you intend to commit lockfile updates.\n'
|
||||
);
|
||||
@@ -1,108 +0,0 @@
|
||||
#!/usr/bin/env node
|
||||
/**
|
||||
* Logs build context (OHIF branch/version, CS3D source) for diagnosing build issues on GitHub.
|
||||
* Run from repo root. Used by version.mjs and can be invoked from CI workflows.
|
||||
*/
|
||||
import { execa } from 'execa';
|
||||
import fs from 'fs/promises';
|
||||
import path from 'path';
|
||||
import { fileURLToPath } from 'url';
|
||||
|
||||
const __dirname = path.dirname(fileURLToPath(import.meta.url));
|
||||
const REPO_ROOT = path.resolve(__dirname, '..');
|
||||
|
||||
function log(msg) {
|
||||
console.log(`[build-context] ${msg}`);
|
||||
}
|
||||
|
||||
async function detectCs3dSource() {
|
||||
const libsCs3d = path.join(REPO_ROOT, 'libs/@cornerstonejs');
|
||||
const coreInNodeModules = path.join(REPO_ROOT, 'node_modules/@cornerstonejs/core');
|
||||
|
||||
try {
|
||||
const libsExists = await fs.access(libsCs3d).then(() => true).catch(() => false);
|
||||
if (!libsExists) {
|
||||
return { source: 'npm', detail: 'published @cornerstonejs packages (no libs/@cornerstonejs)' };
|
||||
}
|
||||
|
||||
const coreStat = await fs.lstat(coreInNodeModules).catch(() => null);
|
||||
const isSymlink = coreStat?.isSymbolicLink();
|
||||
if (isSymlink) {
|
||||
const target = await fs.readlink(coreInNodeModules);
|
||||
return { source: 'integrated', detail: `linked from libs/@cornerstonejs (→ ${target})` };
|
||||
}
|
||||
|
||||
return { source: 'npm', detail: 'published @cornerstonejs packages (libs exists but not linked)' };
|
||||
} catch {
|
||||
return { source: 'unknown', detail: 'could not detect' };
|
||||
}
|
||||
}
|
||||
|
||||
async function getCs3dVersion() {
|
||||
try {
|
||||
const corePkg = path.join(REPO_ROOT, 'node_modules/@cornerstonejs/core/package.json');
|
||||
const pkg = JSON.parse(await fs.readFile(corePkg, 'utf-8'));
|
||||
return pkg.version || 'unknown';
|
||||
} catch {
|
||||
return 'unknown';
|
||||
}
|
||||
}
|
||||
|
||||
async function getCs3dBranchFromLibs() {
|
||||
try {
|
||||
const libsCs3d = path.join(REPO_ROOT, 'libs/@cornerstonejs');
|
||||
const { stdout } = await execa('git', ['rev-parse', '--abbrev-ref', 'HEAD'], {
|
||||
cwd: libsCs3d,
|
||||
});
|
||||
return stdout;
|
||||
} catch {
|
||||
return null;
|
||||
}
|
||||
}
|
||||
|
||||
async function run() {
|
||||
const inCI = process.env.GITHUB_ACTIONS === 'true';
|
||||
const buildType = inCI ? (process.env.BUILD_TYPE || 'ohif-upstream') : 'local';
|
||||
|
||||
log('═══════════════════════════════════════════════════════════════');
|
||||
log('Build context (for diagnosing GitHub build issues)');
|
||||
log('═══════════════════════════════════════════════════════════════');
|
||||
|
||||
if (inCI) {
|
||||
log(`Build type: ${process.env.BUILD_TYPE || 'ohif-upstream'}`);
|
||||
log(`GitHub repo: ${process.env.GITHUB_REPOSITORY || 'unknown'}`);
|
||||
log(`GitHub ref: ${process.env.GITHUB_REF || 'unknown'}`);
|
||||
log(`GitHub SHA: ${process.env.GITHUB_SHA || 'unknown'}`);
|
||||
log(`Workflow: ${process.env.GITHUB_WORKFLOW || 'unknown'}`);
|
||||
}
|
||||
|
||||
try {
|
||||
const { stdout: branch } = await execa('git', ['rev-parse', '--abbrev-ref', 'HEAD'], {
|
||||
cwd: REPO_ROOT,
|
||||
});
|
||||
const { stdout: sha } = await execa('git', ['rev-parse', '--short', 'HEAD'], {
|
||||
cwd: REPO_ROOT,
|
||||
});
|
||||
log(`OHIF branch: ${branch} (${sha})`);
|
||||
} catch {
|
||||
log('OHIF branch: (not a git repo or error)');
|
||||
}
|
||||
|
||||
const cs3d = await detectCs3dSource();
|
||||
log(`CS3D source: ${cs3d.source} — ${cs3d.detail}`);
|
||||
|
||||
if (cs3d.source === 'integrated') {
|
||||
const branch = await getCs3dBranchFromLibs();
|
||||
if (branch) log(`CS3D branch (libs/@cornerstonejs): ${branch}`);
|
||||
} else {
|
||||
const ver = await getCs3dVersion();
|
||||
log(`CS3D version (@cornerstonejs/core): ${ver}`);
|
||||
}
|
||||
|
||||
log('═══════════════════════════════════════════════════════════════');
|
||||
}
|
||||
|
||||
run().catch((err) => {
|
||||
console.error('[build-context] Error:', err.message);
|
||||
process.exitCode = 1;
|
||||
});
|
||||
Vendored
+1
-4
@@ -82,7 +82,6 @@
|
||||
"Reslices",
|
||||
"roadmap",
|
||||
"ROADMAPS",
|
||||
"rtstruct",
|
||||
"Segmentations",
|
||||
"semibold",
|
||||
"sitk",
|
||||
@@ -110,8 +109,6 @@
|
||||
"wado",
|
||||
"wadors",
|
||||
"wadouri",
|
||||
"workerpool",
|
||||
"Colorbar",
|
||||
"Colorbars"
|
||||
"workerpool"
|
||||
]
|
||||
}
|
||||
+10
-25
@@ -26,7 +26,6 @@ const ReactRefreshWebpackPlugin = require('@pmmmwh/react-refresh-webpack-plugin'
|
||||
const NODE_ENV = process.env.NODE_ENV;
|
||||
const QUICK_BUILD = process.env.QUICK_BUILD;
|
||||
const BUILD_NUM = process.env.CIRCLE_BUILD_NUM || '0';
|
||||
const IS_COVERAGE = process.env.COVERAGE === 'true';
|
||||
|
||||
// read from ../version.txt
|
||||
const VERSION_NUMBER = fs.readFileSync(path.join(__dirname, '../version.txt'), 'utf8') || '';
|
||||
@@ -101,30 +100,14 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
...(isProdBuild
|
||||
? []
|
||||
: [
|
||||
...(IS_COVERAGE
|
||||
? [
|
||||
{
|
||||
test: /\.[jt]sx?$/,
|
||||
exclude: /node_modules/,
|
||||
use: {
|
||||
loader: 'babel-loader',
|
||||
options: {
|
||||
presets: ['@babel/preset-typescript', '@babel/preset-react'],
|
||||
plugins: ['istanbul'],
|
||||
},
|
||||
},
|
||||
},
|
||||
]
|
||||
: [
|
||||
{
|
||||
test: /\.[jt]sx?$/,
|
||||
exclude: /node_modules/,
|
||||
loader: 'babel-loader',
|
||||
options: {
|
||||
plugins: isProdBuild ? [] : ['react-refresh/babel'],
|
||||
},
|
||||
},
|
||||
]),
|
||||
{
|
||||
test: /\.[jt]sx?$/,
|
||||
exclude: /node_modules/,
|
||||
loader: 'babel-loader',
|
||||
options: {
|
||||
plugins: isProdBuild ? [] : ['react-refresh/babel'],
|
||||
},
|
||||
},
|
||||
]),
|
||||
{
|
||||
test: /\.svg?$/,
|
||||
@@ -201,6 +184,8 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
'@hooks': path.resolve(__dirname, '../platform/app/src/hooks'),
|
||||
'@routes': path.resolve(__dirname, '../platform/app/src/routes'),
|
||||
'@state': path.resolve(__dirname, '../platform/app/src/state'),
|
||||
'dicom-microscopy-viewer':
|
||||
'dicom-microscopy-viewer/dist/dynamic-import/dicomMicroscopyViewer.min.js',
|
||||
},
|
||||
// Which directories to search when resolving modules
|
||||
modules: [
|
||||
|
||||
+4
-3265
File diff suppressed because it is too large.
Load diff
+3
-4
@@ -49,8 +49,8 @@ RUN apt-get update && apt-get install -y build-essential python3
|
||||
|
||||
RUN mkdir /usr/src/app
|
||||
WORKDIR /usr/src/app
|
||||
RUN npm install -g bun@1.2.23
|
||||
RUN npm install -g lerna@7.4.2
|
||||
RUN npm install -g bun
|
||||
# RUN npm install -g lerna@7.4.2
|
||||
ENV PATH=/usr/src/app/node_modules/.bin:$PATH
|
||||
|
||||
# Do an initial install and then a final install
|
||||
@@ -60,7 +60,6 @@ COPY --parents ./addOns/package.json ./addOns/*/*/package.json ./extensions/*/pa
|
||||
|
||||
RUN bun pm cache rm
|
||||
RUN bun install
|
||||
RUN bun add ajv@8.12.0
|
||||
# Copy the local directory
|
||||
COPY --link --exclude=yarn.lock --exclude=package.json --exclude=Dockerfile . .
|
||||
|
||||
@@ -99,7 +98,7 @@ COPY --from=builder /usr/src/app/platform/app/dist/dicom-microscopy-viewer /usr/
|
||||
# In entrypoint.sh, app-config.js might be overwritten, so chmod it to be writeable.
|
||||
# The nginx user cannot chmod it, so change to root.
|
||||
USER root
|
||||
RUN chown -R nginx:nginx /usr/share/nginx/html && chmod -R 777 /usr/share/nginx/html
|
||||
RUN chown -R nginx:nginx /usr/share/nginx/html
|
||||
USER nginx
|
||||
ENTRYPOINT ["/usr/src/entrypoint.sh"]
|
||||
CMD ["nginx", "-g", "daemon off;"]
|
||||
@@ -49,12 +49,11 @@ provided by the <a href="https://ohif.org/">Open Health Imaging Foundation (OHIF
|
||||
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-4d.webp?raw=true" alt="4D" width="350"/> | 4D | [Demo](https://viewer.ohif.org/dynamic-volume?StudyInstanceUIDs=2.25.232704420736447710317909004159492840763) |
|
||||
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-video.webp?raw=true" alt="VIDEO" width="350"/> | Video | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=2.25.96975534054447904995905761963464388233) |
|
||||
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/microscopy.webp?raw=true" alt="microscopy" width="350"/> | Slide Microscopy | [Demo](https://viewer.ohif.org/microscopy?StudyInstanceUIDs=2.25.141277760791347900862109212450152067508) |
|
||||
| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-ecg.webp?raw=true" alt="ECG" width="350"/> | ECG Waveform | [Demo](https://viewer-dev.ohif.org/viewer?StudyInstanceUIDs=2.25.209974489360710696739324151261716440238) |
|
||||
|
||||
## About
|
||||
|
||||
The OHIF Viewer can retrieve
|
||||
and load images from most sources and formats, render sets in 2D, 3D, and
|
||||
and load images from most sources and formats; render sets in 2D, 3D, and
|
||||
reconstructed representations; allows for the manipulation, annotation, and
|
||||
serialization of observations; supports internationalization, OpenID Connect,
|
||||
offline use, hotkeys, and many more features.
|
||||
@@ -77,7 +76,7 @@ contributions of individuals, research groups, and commercial organizations.
|
||||
After more than 8-years of integrating with many companies and organizations,
|
||||
The OHIF Viewer has been rebuilt from the ground up to better address the
|
||||
varying workflow and configuration needs of its many users. All of the Viewer's
|
||||
core features are built using its own extension system. The same extensibility
|
||||
core features are built using it's own extension system. The same extensibility
|
||||
that allows us to offer:
|
||||
|
||||
- 2D and 3D medical image viewing
|
||||
@@ -105,6 +104,7 @@ For commercial support, academic collaborations, and answers to common
|
||||
questions; please use [Get Support](https://ohif.org/get-support/) to contact
|
||||
us.
|
||||
|
||||
|
||||
## Developing
|
||||
|
||||
### Branches
|
||||
@@ -147,14 +147,7 @@ Here is a schematic representation of our development workflow:
|
||||
3. Navigate to the cloned project's directory
|
||||
4. Add this repo as a `remote` named `upstream`
|
||||
- `git remote add upstream https://github.com/OHIF/Viewers.git`
|
||||
5. `yarn install --frozen-lockfile` to restore dependencies and link projects
|
||||
|
||||
:::danger
|
||||
In general run `yarn install` with the `--frozen-lockfile` flag to help avoid
|
||||
supply chain attacks by enforcing reproducible dependencies. That is, if the
|
||||
`yarn.lock` file is clean and does NOT reference compromised packages, then
|
||||
no compromised packages should land on your machine by using this flag.
|
||||
:::
|
||||
5. `yarn install` to restore dependencies and link projects
|
||||
|
||||
#### To Develop
|
||||
|
||||
@@ -165,67 +158,9 @@ _From this repository's root directory:_
|
||||
yarn config set workspaces-experimental true
|
||||
|
||||
# Restore dependencies
|
||||
yarn install --frozen-lockfile
|
||||
yarn install
|
||||
```
|
||||
|
||||
### Cornerstone3D Integration Testing
|
||||
|
||||
OHIF's Playwright end-to-end tests can run against a **CS3D branch** or a
|
||||
**published CS3D version**, allowing changes that span both repositories to be
|
||||
validated together before merging.
|
||||
|
||||
#### Setting up an integration build
|
||||
|
||||
1. Add the **`ohif-integration`** label to your OHIF pull request.
|
||||
2. In the PR body, add a line specifying the CS3D ref:
|
||||
```
|
||||
CS3D_REF: feat/my-feature
|
||||
```
|
||||
- **Version ref** (e.g. `4.19+`, `4.18.2`) — the workflow resolves it to an
|
||||
exact published version and swaps the CS3D dependency via npm.
|
||||
- **Branch ref** (e.g. `main`, `cornerstonejs:feat/foo`) — the workflow
|
||||
clones the branch, builds CS3D from source with `bun run build:esm`, and
|
||||
symlinks the built packages into OHIF's `node_modules`.
|
||||
- For forks, use the `<owner>:<branch>` format
|
||||
(e.g. `myGithubUser:feat/foo`).
|
||||
- If no `CS3D_REF` is specified, the default is `4.19+`.
|
||||
3. The workflow can also be triggered manually via **workflow_dispatch** with a
|
||||
`cs3d_ref` input.
|
||||
|
||||
#### What happens in CI
|
||||
|
||||
The [Playwright workflow](.github/workflows/playwright.yml) runs two jobs:
|
||||
|
||||
| Job | Purpose |
|
||||
|-----|---------|
|
||||
| **Playwright Tests** | Builds OHIF (with CS3D linked or version-swapped), runs the full Playwright suite, uploads test results and coverage, and deploys a Netlify preview when `ohif-integration` is active. |
|
||||
| **CS3D Branch Merge Guard** | A lightweight check that **fails** when the `ohif-integration` label is present and `CS3D_REF` points to a branch (not a version). This prevents merging while still letting the Playwright tests show green so you can see whether the code actually works. |
|
||||
|
||||
#### Testing changes that span both repos
|
||||
|
||||
If a feature requires changes in both Cornerstone3D and OHIF:
|
||||
|
||||
1. Create your feature branch in CS3D and push it.
|
||||
2. Create a matching branch in OHIF.
|
||||
3. Add the `ohif-integration` label to the OHIF pull request.
|
||||
4. In the PR body, add: `CS3D_REF: <your-cs3d-branch>`.
|
||||
5. Playwright tests will build CS3D from source, link it, and run the full
|
||||
suite. The merge guard will block merge until you switch to a published
|
||||
version — but you can see the test results and the preview deploy while
|
||||
iterating.
|
||||
6. Once the CS3D side is merged and published, update the PR body to reference
|
||||
the published version (e.g. `CS3D_REF: 4.19+`). The tests will run against
|
||||
the registry version and the merge guard will pass.
|
||||
|
||||
#### Preview deploys
|
||||
|
||||
When `ohif-integration` is active, the Playwright workflow also builds the OHIF
|
||||
viewer and deploys it to Netlify as a preview. This gives you a live URL to
|
||||
manually test the combined CS3D + OHIF changes without running anything locally.
|
||||
|
||||
For details on linking CS3D locally for development, see the
|
||||
[Cornerstone3D README](libs/@cornerstonejs/README.md#local-development-linking--unlinking).
|
||||
|
||||
## Commands
|
||||
|
||||
These commands are available from the root directory. Each project directory
|
||||
|
||||
+3
-2542
File diff suppressed because it is too large.
Load diff
+76
-70
@@ -1,7 +1,7 @@
|
||||
{
|
||||
"name": "@externals/devDependencies",
|
||||
"description": "External dev dependencies - put dev build dependencies here",
|
||||
"version": "3.13.0-beta.63",
|
||||
"version": "3.10.2",
|
||||
"license": "MIT",
|
||||
"private": true,
|
||||
"engines": {
|
||||
@@ -9,81 +9,87 @@
|
||||
"yarn": ">=1.19.1"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "7.28.2",
|
||||
"@kitware/vtk.js": "34.15.1",
|
||||
"clsx": "2.1.1",
|
||||
"core-js": "3.45.1",
|
||||
"moment": "2.30.1"
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"clsx": "^2.1.1",
|
||||
"core-js": "^3.2.1",
|
||||
"moment": "^2.30.1"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"react": "18.3.1",
|
||||
"react-dom": "18.3.1"
|
||||
"react": "^18.3.1",
|
||||
"react-dom": "^18.3.1"
|
||||
},
|
||||
"devDependencies": {
|
||||
"@pmmmwh/react-refresh-webpack-plugin": "0.5.17",
|
||||
"@rsbuild/core": "1.5.1",
|
||||
"@rsbuild/plugin-node-polyfill": "1.4.2",
|
||||
"@rsbuild/plugin-react": "1.4.0",
|
||||
"@svgr/webpack": "8.1.0",
|
||||
"@swc/helpers": "0.5.17",
|
||||
"@types/jest": "27.5.2",
|
||||
"@typescript-eslint/eslint-plugin": "8.56.0",
|
||||
"@typescript-eslint/parser": "8.56.0",
|
||||
"autoprefixer": "10.4.21",
|
||||
"babel-loader": "8.4.1",
|
||||
"clean-webpack-plugin": "3.0.0",
|
||||
"copy-webpack-plugin": "9.1.0",
|
||||
"cross-env": "7.0.3",
|
||||
"css-loader": "6.11.0",
|
||||
"dotenv": "8.6.0",
|
||||
"eslint": "9.39.3",
|
||||
"eslint-config-prettier": "7.2.0",
|
||||
"eslint-config-react-app": "7.0.1",
|
||||
"eslint-plugin-cypress": "2.15.2",
|
||||
"eslint-plugin-import": "2.32.0",
|
||||
"eslint-plugin-jsx-a11y": "6.10.2",
|
||||
"eslint-plugin-node": "11.1.0",
|
||||
"eslint-plugin-prettier": "5.5.1",
|
||||
"eslint-plugin-promise": "7.2.1",
|
||||
"eslint-plugin-react": "7.37.5",
|
||||
"eslint-plugin-react-hooks": "7.0.1",
|
||||
"eslint-plugin-tsdoc": "0.2.17",
|
||||
"execa": "8.0.1",
|
||||
"extract-css-chunks-webpack-plugin": "4.10.0",
|
||||
"html-webpack-plugin": "5.6.3",
|
||||
"husky": "3.1.0",
|
||||
"jest": "29.7.0",
|
||||
"jest-canvas-mock": "2.5.2",
|
||||
"jest-environment-jsdom": "29.7.0",
|
||||
"jest-junit": "6.4.0",
|
||||
"lerna": "9.0.4",
|
||||
"lint-staged": "9.5.0",
|
||||
"mini-css-extract-plugin": "2.9.2",
|
||||
"optimize-css-assets-webpack-plugin": "6.0.1",
|
||||
"postcss": "8.5.6",
|
||||
"postcss-import": "14.1.0",
|
||||
"postcss-loader": "6.2.1",
|
||||
"postcss-preset-env": "7.8.3",
|
||||
"prettier": "3.6.2",
|
||||
"prettier-plugin-tailwindcss": "0.6.9",
|
||||
"react-refresh": "0.14.2",
|
||||
"semver": "7.7.2",
|
||||
"serve": "14.2.5",
|
||||
"shader-loader": "1.3.1",
|
||||
"shx": "0.3.4",
|
||||
"source-map-loader": "4.0.2",
|
||||
"style-loader": "1.3.0",
|
||||
"terser-webpack-plugin": "5.3.14",
|
||||
"@pmmmwh/react-refresh-webpack-plugin": "^0.5.15",
|
||||
"@rsbuild/core": "^1.1.13",
|
||||
"@rsbuild/plugin-node-polyfill": "1.2.0",
|
||||
"@rsbuild/plugin-react": "^1.1.0",
|
||||
"@svgr/webpack": "^8.1.0",
|
||||
"@swc/helpers": "^0.5.15",
|
||||
"@types/jest": "^27.5.0",
|
||||
"@typescript-eslint/eslint-plugin": "^6.3.0",
|
||||
"@typescript-eslint/parser": "^6.3.0",
|
||||
"autoprefixer": "^10.4.4",
|
||||
"babel-eslint": "9.x",
|
||||
"babel-loader": "^8.2.4",
|
||||
"babel-plugin-module-resolver": "^5.0.0",
|
||||
"clean-webpack-plugin": "^3.0.0",
|
||||
"copy-webpack-plugin": "^9.0.1",
|
||||
"cross-env": "^5.2.0",
|
||||
"css-loader": "^6.8.1",
|
||||
"dotenv": "^8.1.0",
|
||||
"eslint": "^8.39.0",
|
||||
"eslint-config-prettier": "^7.2.0",
|
||||
"eslint-config-react-app": "^6.0.0",
|
||||
"eslint-plugin-cypress": "^2.12.1",
|
||||
"eslint-plugin-flowtype": "^7.0.0",
|
||||
"eslint-plugin-import": "^2.26.0",
|
||||
"eslint-plugin-jsx-a11y": "^6.5.1",
|
||||
"eslint-plugin-node": "^11.1.0",
|
||||
"eslint-plugin-prettier": "^5.0.0",
|
||||
"eslint-plugin-promise": "^5.2.0",
|
||||
"eslint-plugin-react": "^7.29.4",
|
||||
"eslint-plugin-react-hooks": "^4.4.0",
|
||||
"eslint-plugin-tsdoc": "^0.2.11",
|
||||
"eslint-webpack-plugin": "^2.5.3",
|
||||
"execa": "^8.0.1",
|
||||
"extract-css-chunks-webpack-plugin": "^4.5.4",
|
||||
"html-webpack-plugin": "^5.3.2",
|
||||
"husky": "^3.0.0",
|
||||
"jest": "^29.5.0",
|
||||
"jest-canvas-mock": "^2.1.0",
|
||||
"jest-environment-jsdom": "^29.5.0",
|
||||
"jest-junit": "^6.4.0",
|
||||
"lerna": "^7.2.0",
|
||||
"lint-staged": "^9.0.2",
|
||||
"mini-css-extract-plugin": "^2.1.0",
|
||||
"optimize-css-assets-webpack-plugin": "^6.0.1",
|
||||
"postcss": "^8.3.5",
|
||||
"postcss-import": "^14.0.2",
|
||||
"postcss-loader": "^6.1.1",
|
||||
"postcss-preset-env": "^7.4.3",
|
||||
"prettier": "^3.0.3",
|
||||
"prettier-plugin-tailwindcss": "^0.5.4",
|
||||
"react-refresh": "^0.14.2",
|
||||
"semver": "^7.5.1",
|
||||
"serve": "^14.2.4",
|
||||
"shader-loader": "^1.3.1",
|
||||
"shx": "^0.3.3",
|
||||
"source-map-loader": "^4.0.1",
|
||||
"style-loader": "^1.0.0",
|
||||
"stylus": "^0.59.0",
|
||||
"stylus-loader": "^7.1.3",
|
||||
"terser-webpack-plugin": "^5.1.4",
|
||||
"typescript": "5.5.4",
|
||||
"unused-webpack-plugin": "2.4.0",
|
||||
"webpack": "5.105.0",
|
||||
"webpack-bundle-analyzer": "4.10.2",
|
||||
"webpack-cli": "5.1.4",
|
||||
"webpack-dev-server": "5.2.2",
|
||||
"webpack-hot-middleware": "2.26.1",
|
||||
"webpack-merge": "5.10.0",
|
||||
"workbox-webpack-plugin": "6.6.1",
|
||||
"worker-loader": "3.0.8"
|
||||
"webpack": "5.94.0",
|
||||
"webpack-bundle-analyzer": "^4.8.0",
|
||||
"webpack-cli": "^4.7.2",
|
||||
"webpack-dev-server": "4.7.3",
|
||||
"webpack-hot-middleware": "^2.25.0",
|
||||
"webpack-merge": "^5.7.3",
|
||||
"workbox-webpack-plugin": "^6.1.5",
|
||||
"worker-loader": "^3.0.8"
|
||||
},
|
||||
"scripts": {
|
||||
"build": "Included as direct dependency"
|
||||
|
||||
+3
-2524
File diff suppressed because it is too large.
Load diff
+2
-2
@@ -1,9 +1,9 @@
|
||||
{
|
||||
"name": "@externals/dicom-microscopy-viewer",
|
||||
"description": "External reference to dicom-microscopy-viewer",
|
||||
"version": "3.13.0-beta.63",
|
||||
"version": "3.10.2",
|
||||
"license": "MIT",
|
||||
"dependencies": {
|
||||
"dicom-microscopy-viewer": "0.48.17"
|
||||
"dicom-microscopy-viewer": "^0.46.1"
|
||||
}
|
||||
}
|
||||
+23
-22
@@ -21,30 +21,31 @@
|
||||
"preinstall": "cd .. && node preinstall.js"
|
||||
},
|
||||
"devDependencies": {
|
||||
"@babel/core": "7.28.0",
|
||||
"@babel/plugin-transform-class-properties": "7.27.1",
|
||||
"@babel/plugin-transform-object-rest-spread": "7.28.0",
|
||||
"@babel/plugin-transform-private-methods": "7.27.1",
|
||||
"@babel/plugin-transform-private-property-in-object": "7.27.1",
|
||||
"@babel/plugin-syntax-dynamic-import": "7.8.3",
|
||||
"@babel/plugin-transform-arrow-functions": "7.27.1",
|
||||
"@babel/plugin-transform-regenerator": "7.28.1",
|
||||
"@babel/plugin-transform-runtime": "7.28.0",
|
||||
"@babel/plugin-transform-typescript": "7.28.0",
|
||||
"@babel/preset-env": "7.28.0",
|
||||
"@babel/preset-react": "7.27.1",
|
||||
"@babel/preset-typescript": "7.27.1"
|
||||
"@babel/core": "7.24.7",
|
||||
"@babel/plugin-proposal-class-properties": "^7.16.7",
|
||||
"@babel/plugin-proposal-object-rest-spread": "^7.17.3",
|
||||
"@babel/plugin-proposal-private-methods": "^7.18.6",
|
||||
"@babel/plugin-proposal-private-property-in-object": "^7.21.11",
|
||||
"@babel/plugin-syntax-dynamic-import": "^7.8.3",
|
||||
"@babel/plugin-transform-arrow-functions": "^7.16.7",
|
||||
"@babel/plugin-transform-regenerator": "^7.16.7",
|
||||
"@babel/plugin-transform-runtime": "7.24.7",
|
||||
"@babel/plugin-transform-typescript": "^7.13.0",
|
||||
"@babel/preset-env": "7.24.7",
|
||||
"@babel/preset-react": "^7.16.7",
|
||||
"@babel/preset-typescript": "^7.13.0"
|
||||
},
|
||||
"resolutions": {
|
||||
"**/@babel/runtime": "7.28.2",
|
||||
"**/@babel/runtime": "^7.20.13",
|
||||
"commander": "8.3.0",
|
||||
"dcmjs": "0.49.4",
|
||||
"dicomweb-client": "0.10.4",
|
||||
"nth-check": "2.1.1",
|
||||
"trim-newlines": "5.0.0",
|
||||
"glob-parent": "6.0.2",
|
||||
"trim": "1.0.1",
|
||||
"package-json": "8.1.1",
|
||||
"typescript": "5.5.4"
|
||||
"dcmjs": "0.38.0",
|
||||
"dicomweb-client": ">=0.10.4",
|
||||
"nth-check": "^2.1.1",
|
||||
"trim-newlines": "^5.0.0",
|
||||
"glob-parent": "^6.0.2",
|
||||
"trim": "^1.0.0",
|
||||
"package-json": "^8.1.0",
|
||||
"typescript": "5.5.4",
|
||||
"sharp": "^0.32.6"
|
||||
}
|
||||
}
|
||||
+4
-9
@@ -3,10 +3,10 @@ module.exports = {
|
||||
babelrcRoots: ['./platform/*', './extensions/*', './modes/*'],
|
||||
presets: ['@babel/preset-env', '@babel/preset-react', '@babel/preset-typescript'],
|
||||
plugins: [
|
||||
['@babel/plugin-transform-class-properties', { loose: true }],
|
||||
['@babel/plugin-proposal-class-properties', { loose: true }],
|
||||
'@babel/plugin-transform-typescript',
|
||||
['@babel/plugin-transform-private-property-in-object', { loose: true }],
|
||||
['@babel/plugin-transform-private-methods', { loose: true }],
|
||||
['@babel/plugin-proposal-private-property-in-object', { loose: true }],
|
||||
['@babel/plugin-proposal-private-methods', { loose: true }],
|
||||
'@babel/plugin-transform-class-static-block',
|
||||
],
|
||||
env: {
|
||||
@@ -18,24 +18,19 @@ module.exports = {
|
||||
{
|
||||
modules: 'commonjs',
|
||||
debug: false,
|
||||
targets: { node: 'current' },
|
||||
bugfixes: true,
|
||||
},
|
||||
],
|
||||
'@babel/preset-react',
|
||||
'@babel/preset-typescript',
|
||||
],
|
||||
plugins: [
|
||||
'babel-plugin-istanbul',
|
||||
'@babel/plugin-transform-object-rest-spread',
|
||||
'@babel/plugin-proposal-object-rest-spread',
|
||||
'@babel/plugin-syntax-dynamic-import',
|
||||
'@babel/plugin-transform-regenerator',
|
||||
'@babel/transform-destructuring',
|
||||
'@babel/plugin-transform-runtime',
|
||||
'@babel/plugin-transform-typescript',
|
||||
'@babel/plugin-transform-class-static-block',
|
||||
'@babel/plugin-transform-for-of',
|
||||
['babel-plugin-transform-import-meta', { module: 'ES6' }],
|
||||
],
|
||||
},
|
||||
production: {
|
||||
|
||||
@@ -1,2 +0,0 @@
|
||||
[install]
|
||||
frozenLockfile = true
|
||||
@@ -1,2 +0,0 @@
|
||||
[install]
|
||||
frozenLockfile = false
|
||||
+1
-1
@@ -1 +1 @@
|
||||
f3cca21e49729fbf4bab85aa1de64b9dcfebd0ce
|
||||
36813e0c2f1ea48953714e8e48aff6e9d4516449
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,5 +1,5 @@
|
||||
module.exports = {
|
||||
plugins: ['@babel/plugin-transform-class-properties'],
|
||||
plugins: ['@babel/plugin-proposal-class-properties'],
|
||||
env: {
|
||||
test: {
|
||||
presets: [
|
||||
@@ -15,7 +15,7 @@ module.exports = {
|
||||
'@babel/preset-react',
|
||||
],
|
||||
plugins: [
|
||||
'@babel/plugin-transform-object-rest-spread',
|
||||
'@babel/plugin-proposal-object-rest-spread',
|
||||
'@babel/plugin-syntax-dynamic-import',
|
||||
'@babel/plugin-transform-regenerator',
|
||||
'@babel/plugin-transform-runtime',
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-pmap",
|
||||
"version": "3.13.0-beta.63",
|
||||
"version": "3.10.2",
|
||||
"description": "DICOM Parametric Map read workflow",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -33,21 +33,22 @@
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.13.0-beta.63",
|
||||
"@ohif/extension-cornerstone": "3.13.0-beta.63",
|
||||
"@ohif/extension-default": "3.13.0-beta.63",
|
||||
"@ohif/i18n": "3.13.0-beta.63",
|
||||
"prop-types": "15.8.1",
|
||||
"react": "18.3.1",
|
||||
"react-dom": "18.3.1",
|
||||
"react-i18next": "12.3.1",
|
||||
"react-router": "6.30.3",
|
||||
"react-router-dom": "6.30.3"
|
||||
"@ohif/core": "3.10.2",
|
||||
"@ohif/extension-cornerstone": "3.10.2",
|
||||
"@ohif/extension-default": "3.10.2",
|
||||
"@ohif/i18n": "3.10.2",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^18.3.1",
|
||||
"react-dom": "^18.3.1",
|
||||
"react-i18next": "^12.2.2",
|
||||
"react-router": "^6.8.1",
|
||||
"react-router-dom": "^6.8.1"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "7.28.2",
|
||||
"@cornerstonejs/adapters": "4.21.7",
|
||||
"@cornerstonejs/core": "4.21.7",
|
||||
"@kitware/vtk.js": "34.15.1"
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^3.11.6",
|
||||
"@cornerstonejs/core": "^3.11.6",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"react-color": "^2.19.3"
|
||||
}
|
||||
}
|
||||
@@ -1,9 +1,10 @@
|
||||
import { utils, Types as OhifTypes } from '@ohif/core';
|
||||
import i18n from '@ohif/i18n';
|
||||
import { utils } from '@ohif/core';
|
||||
import { metaData, cache, utilities as csUtils, volumeLoader } from '@cornerstonejs/core';
|
||||
import { adaptersPMAP } from '@cornerstonejs/adapters';
|
||||
import { SOPClassHandlerId } from './id';
|
||||
import { dicomLoaderService, VOLUME_LOADER_SCHEME } from '@ohif/extension-cornerstone';
|
||||
import { dicomLoaderService } from '@ohif/extension-cornerstone';
|
||||
|
||||
const VOLUME_LOADER_SCHEME = 'cornerstoneStreamingImageVolume';
|
||||
const sopClassUids = ['1.2.840.10008.5.1.4.1.1.30'];
|
||||
|
||||
function _getDisplaySetsFromSeries(
|
||||
@@ -56,8 +57,7 @@ function _getDisplaySetsFromSeries(
|
||||
wadoRoot,
|
||||
wadoUriRoot,
|
||||
wadoUri,
|
||||
supportsWindowLevel: true,
|
||||
label: SeriesDescription || `${i18n.t('Series')} ${SeriesNumber} - ${i18n.t('PMAP')}`,
|
||||
isOverlayDisplaySet: true,
|
||||
};
|
||||
|
||||
const referencedSeriesSequence = instance.ReferencedSeriesSequence;
|
||||
@@ -227,8 +227,7 @@ async function _loadParametricMap({ displaySet, headers }: withAppTypes) {
|
||||
return derivedVolume;
|
||||
}
|
||||
|
||||
function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams) {
|
||||
const { servicesManager, extensionManager } = params;
|
||||
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
|
||||
const getDisplaySetsFromSeries = instances => {
|
||||
return _getDisplaySetsFromSeries(instances, servicesManager, extensionManager);
|
||||
};
|
||||
|
||||
@@ -1,10 +1,16 @@
|
||||
import PropTypes from 'prop-types';
|
||||
import React, { useCallback, useEffect, useRef, useState } from 'react';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import { OHIFCornerstoneViewport } from '@ohif/extension-cornerstone';
|
||||
|
||||
function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
const { displaySets, children, viewportOptions, displaySetOptions, servicesManager } = props;
|
||||
const {
|
||||
displaySets,
|
||||
children,
|
||||
viewportOptions,
|
||||
displaySetOptions,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
} = props;
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
const { displaySetService, segmentationService, uiNotificationService, customizationService } =
|
||||
servicesManager.services;
|
||||
@@ -53,6 +59,9 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
|
||||
const getCornerstoneViewport = useCallback(() => {
|
||||
const { displaySet: referencedDisplaySet } = referencedDisplaySetRef.current;
|
||||
const { component: Component } = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.viewportModule.cornerstone'
|
||||
);
|
||||
|
||||
displaySetOptions.unshift({});
|
||||
const [pmapDisplaySetOptions] = displaySetOptions;
|
||||
@@ -84,7 +93,7 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
});
|
||||
|
||||
return (
|
||||
<OHIFCornerstoneViewport
|
||||
<Component
|
||||
{...props}
|
||||
// Referenced + PMAP displaySets must be passed as parameter in this order
|
||||
displaySets={[referencedDisplaySet, pmapDisplaySet]}
|
||||
@@ -95,16 +104,15 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
presentationIds: viewportOptions.presentationIds,
|
||||
}}
|
||||
displaySetOptions={[{}, pmapDisplaySetOptions]}
|
||||
/>
|
||||
></Component>
|
||||
);
|
||||
}, [
|
||||
extensionManager,
|
||||
displaySetOptions,
|
||||
props,
|
||||
pmapDisplaySet,
|
||||
viewportOptions.orientation,
|
||||
viewportOptions.viewportId,
|
||||
viewportOptions.presentationIds,
|
||||
uiNotificationService,
|
||||
]);
|
||||
|
||||
// Cleanup the PMAP viewport when the viewport is destroyed
|
||||
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,5 +1,5 @@
|
||||
module.exports = {
|
||||
plugins: ['@babel/plugin-transform-class-properties'],
|
||||
plugins: ['@babel/plugin-proposal-class-properties'],
|
||||
env: {
|
||||
test: {
|
||||
presets: [
|
||||
@@ -15,7 +15,7 @@ module.exports = {
|
||||
'@babel/preset-react',
|
||||
],
|
||||
plugins: [
|
||||
'@babel/plugin-transform-object-rest-spread',
|
||||
'@babel/plugin-proposal-object-rest-spread',
|
||||
'@babel/plugin-syntax-dynamic-import',
|
||||
'@babel/plugin-transform-regenerator',
|
||||
'@babel/plugin-transform-runtime',
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-rt",
|
||||
"version": "3.13.0-beta.63",
|
||||
"version": "3.10.2",
|
||||
"description": "DICOM RT read workflow",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -33,18 +33,19 @@
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.13.0-beta.63",
|
||||
"@ohif/extension-cornerstone": "3.13.0-beta.63",
|
||||
"@ohif/extension-default": "3.13.0-beta.63",
|
||||
"@ohif/i18n": "3.13.0-beta.63",
|
||||
"prop-types": "15.8.1",
|
||||
"react": "18.3.1",
|
||||
"react-dom": "18.3.1",
|
||||
"react-i18next": "12.3.1",
|
||||
"react-router": "6.30.3",
|
||||
"react-router-dom": "6.30.3"
|
||||
"@ohif/core": "3.10.2",
|
||||
"@ohif/extension-cornerstone": "3.10.2",
|
||||
"@ohif/extension-default": "3.10.2",
|
||||
"@ohif/i18n": "3.10.2",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^18.3.1",
|
||||
"react-dom": "^18.3.1",
|
||||
"react-i18next": "^10.11.0",
|
||||
"react-router": "^6.23.1",
|
||||
"react-router-dom": "^6.23.1"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "7.28.2"
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"react-color": "^2.19.3"
|
||||
}
|
||||
}
|
||||
@@ -27,7 +27,7 @@ const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
// it will be in the correct position zoom and pan
|
||||
commandsManager.runCommand('updateStoredPositionPresentation', {
|
||||
viewportId,
|
||||
displaySetInstanceUIDs: [referencedDisplaySet.displaySetInstanceUID],
|
||||
displaySetInstanceUID: referencedDisplaySet.displaySetInstanceUID,
|
||||
});
|
||||
|
||||
viewportGridService.setDisplaySetsForViewport({
|
||||
|
||||
@@ -1,13 +1,9 @@
|
||||
import { utils, Types as OhifTypes } from '@ohif/core';
|
||||
import i18n from '@ohif/i18n';
|
||||
import { segmentation as cstSegmentation } from '@cornerstonejs/tools';
|
||||
import { utils } from '@ohif/core';
|
||||
|
||||
import { SOPClassHandlerId } from './id';
|
||||
import loadRTStruct from './loadRTStruct';
|
||||
|
||||
const { sopClassDictionary } = utils;
|
||||
|
||||
const sopClassUids = [sopClassDictionary.RTStructureSetStorage];
|
||||
const sopClassUids = ['1.2.840.10008.5.1.4.1.1.481.3'];
|
||||
|
||||
const loadPromises = {};
|
||||
|
||||
@@ -16,47 +12,34 @@ function _getDisplaySetsFromSeries(
|
||||
servicesManager: AppTypes.ServicesManager,
|
||||
extensionManager
|
||||
) {
|
||||
utils.sortStudyInstances(instances);
|
||||
// Choose the LAST instance in the list as the most recently created one.
|
||||
const instance = instances[instances.length - 1];
|
||||
const instance = instances[0];
|
||||
|
||||
const {
|
||||
StudyInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
SOPInstanceUID,
|
||||
SeriesDescription = '',
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
StructureSetDate,
|
||||
StructureSetTime,
|
||||
SOPClassUID,
|
||||
wadoRoot,
|
||||
wadoUri,
|
||||
wadoUriRoot,
|
||||
imageId: predecessorImageId,
|
||||
} = instance;
|
||||
|
||||
const displaySet = {
|
||||
Modality: 'RTSTRUCT',
|
||||
loading: false,
|
||||
isReconstructable: false,
|
||||
isReconstructable: false, // by default for now since it is a volumetric SEG currently
|
||||
displaySetInstanceUID: utils.guid(),
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
/**
|
||||
* The "SeriesDate" for a display set is really the display set date, which
|
||||
* should be the date of the instance being used, which will be the structure
|
||||
* set date in this case.
|
||||
*/
|
||||
SeriesDate: StructureSetDate || SeriesDate,
|
||||
SeriesTime: StructureSetTime || SeriesTime,
|
||||
SeriesDate,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
SOPClassHandlerId,
|
||||
SOPClassUID,
|
||||
FrameOfReferenceUID: null,
|
||||
referencedImages: null,
|
||||
referencedSeriesInstanceUID: null,
|
||||
referencedDisplaySetInstanceUID: null,
|
||||
@@ -66,20 +49,14 @@ function _getDisplaySetsFromSeries(
|
||||
structureSet: null,
|
||||
sopClassUids,
|
||||
instance,
|
||||
instances,
|
||||
predecessorImageId,
|
||||
wadoRoot,
|
||||
wadoUriRoot,
|
||||
wadoUri,
|
||||
isOverlayDisplaySet: true,
|
||||
label: SeriesDescription || `${i18n.t('Series')} ${SeriesNumber} - ${i18n.t('RTSTRUCT')}`,
|
||||
};
|
||||
|
||||
let referencedSeriesSequence = instance.ReferencedSeriesSequence;
|
||||
if (
|
||||
instance.ReferencedFrameOfReferenceSequence?.RTReferencedStudySequence &&
|
||||
!instance.ReferencedSeriesSequence
|
||||
) {
|
||||
if (instance.ReferencedFrameOfReferenceSequence && !instance.ReferencedSeriesSequence) {
|
||||
instance.ReferencedSeriesSequence = _deriveReferencedSeriesSequenceFromFrameOfReferenceSequence(
|
||||
instance.ReferencedFrameOfReferenceSequence
|
||||
);
|
||||
@@ -87,8 +64,7 @@ function _getDisplaySetsFromSeries(
|
||||
}
|
||||
|
||||
if (!referencedSeriesSequence) {
|
||||
console.error('ReferencedSeriesSequence is missing for the RTSTRUCT');
|
||||
return;
|
||||
throw new Error('ReferencedSeriesSequence is missing for the RTSTRUCT');
|
||||
}
|
||||
|
||||
const referencedSeries = referencedSeriesSequence[0];
|
||||
@@ -96,17 +72,10 @@ function _getDisplaySetsFromSeries(
|
||||
displaySet.referencedImages = instance.ReferencedSeriesSequence.ReferencedInstanceSequence;
|
||||
displaySet.referencedSeriesInstanceUID = referencedSeries.SeriesInstanceUID;
|
||||
|
||||
displaySet.FrameOfReferenceUID =
|
||||
instance.ReferencedFrameOfReferenceSequence?.[0]?.FrameOfReferenceUID;
|
||||
|
||||
const { displaySetService } = servicesManager.services;
|
||||
const referencedDisplaySets =
|
||||
displaySetService.getDisplaySetsForReferences(referencedSeriesSequence);
|
||||
if (referencedDisplaySets?.length > 1) {
|
||||
console.warn(
|
||||
'Reference applies to more than 1 display set for Contours, applying only to first display set'
|
||||
);
|
||||
}
|
||||
const referencedDisplaySets = displaySetService.getDisplaySetsForSeries(
|
||||
displaySet.referencedSeriesInstanceUID
|
||||
);
|
||||
|
||||
if (!referencedDisplaySets || referencedDisplaySets.length === 0) {
|
||||
// Instead of throwing error, subscribe to display sets added
|
||||
@@ -116,39 +85,27 @@ function _getDisplaySetsFromSeries(
|
||||
const addedDisplaySet = displaySetsAdded[0];
|
||||
if (addedDisplaySet.SeriesInstanceUID === displaySet.referencedSeriesInstanceUID) {
|
||||
displaySet.referencedDisplaySetInstanceUID = addedDisplaySet.displaySetInstanceUID;
|
||||
displaySet.isReconstructable = addedDisplaySet.isReconstructable;
|
||||
displaySet.FrameOfReferenceUID = addedDisplaySet.FrameOfReferenceUID;
|
||||
unsubscribe();
|
||||
}
|
||||
}
|
||||
);
|
||||
} else {
|
||||
const [referencedDisplaySet] = referencedDisplaySets;
|
||||
const referencedDisplaySet = referencedDisplaySets[0];
|
||||
displaySet.referencedDisplaySetInstanceUID = referencedDisplaySet.displaySetInstanceUID;
|
||||
displaySet.isReconstructable = referencedDisplaySet.isReconstructable;
|
||||
displaySet.FrameOfReferenceUID = referencedDisplaySet.FrameOfReferenceUID;
|
||||
}
|
||||
|
||||
displaySet.load = ({ headers, createSegmentation = true }) =>
|
||||
_load(displaySet, servicesManager, extensionManager, headers, createSegmentation);
|
||||
displaySet.load = ({ headers }) => _load(displaySet, servicesManager, extensionManager, headers);
|
||||
|
||||
return [displaySet];
|
||||
}
|
||||
|
||||
function _load(
|
||||
rtDisplaySet,
|
||||
servicesManager: AppTypes.ServicesManager,
|
||||
extensionManager,
|
||||
headers,
|
||||
createSegmentation = true
|
||||
) {
|
||||
function _load(rtDisplaySet, servicesManager: AppTypes.ServicesManager, extensionManager, headers) {
|
||||
const { SOPInstanceUID } = rtDisplaySet;
|
||||
const { segmentationService } = servicesManager.services;
|
||||
|
||||
if (
|
||||
(rtDisplaySet.loading || rtDisplaySet.isLoaded) &&
|
||||
loadPromises[SOPInstanceUID] &&
|
||||
_segmentationExists(rtDisplaySet)
|
||||
_segmentationExistsInCache(rtDisplaySet, segmentationService)
|
||||
) {
|
||||
return loadPromises[SOPInstanceUID];
|
||||
}
|
||||
@@ -157,23 +114,23 @@ function _load(
|
||||
|
||||
// We don't want to fire multiple loads, so we'll wait for the first to finish
|
||||
// and also return the same promise to any other callers.
|
||||
loadPromises[SOPInstanceUID] = new Promise<void>(async (resolve, reject) => {
|
||||
try {
|
||||
if (!rtDisplaySet.structureSet) {
|
||||
const structureSet = await loadRTStruct(extensionManager, rtDisplaySet, headers);
|
||||
rtDisplaySet.structureSet = structureSet;
|
||||
}
|
||||
loadPromises[SOPInstanceUID] = new Promise(async (resolve, reject) => {
|
||||
if (!rtDisplaySet.structureSet) {
|
||||
const structureSet = await loadRTStruct(extensionManager, rtDisplaySet, headers);
|
||||
|
||||
if (createSegmentation) {
|
||||
await segmentationService.createSegmentationForRTDisplaySet(rtDisplaySet);
|
||||
}
|
||||
|
||||
resolve();
|
||||
} catch (error) {
|
||||
reject(error);
|
||||
} finally {
|
||||
rtDisplaySet.loading = false;
|
||||
rtDisplaySet.structureSet = structureSet;
|
||||
}
|
||||
|
||||
segmentationService
|
||||
.createSegmentationForRTDisplaySet(rtDisplaySet)
|
||||
.then(() => {
|
||||
rtDisplaySet.loading = false;
|
||||
resolve();
|
||||
})
|
||||
.catch(error => {
|
||||
rtDisplaySet.loading = false;
|
||||
reject(error);
|
||||
});
|
||||
});
|
||||
|
||||
return loadPromises[SOPInstanceUID];
|
||||
@@ -214,13 +171,20 @@ function _deriveReferencedSeriesSequenceFromFrameOfReferenceSequence(
|
||||
return ReferencedSeriesSequence;
|
||||
}
|
||||
|
||||
function _segmentationExists(segDisplaySet) {
|
||||
return !!cstSegmentation.state.getSegmentation(segDisplaySet.displaySetInstanceUID);
|
||||
function _segmentationExistsInCache(
|
||||
rtDisplaySet,
|
||||
segmentationService: AppTypes.SegmentationService
|
||||
) {
|
||||
// Todo: fix this
|
||||
return false;
|
||||
// This should be abstracted with the CornerstoneCacheService
|
||||
const rtContourId = rtDisplaySet.displaySetInstanceUID;
|
||||
const contour = segmentationService.getContour(rtContourId);
|
||||
|
||||
return contour !== undefined;
|
||||
}
|
||||
|
||||
function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams) {
|
||||
const { servicesManager, extensionManager } = params;
|
||||
|
||||
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
|
||||
return [
|
||||
{
|
||||
name: 'dicom-rt',
|
||||
|
||||
@@ -2,34 +2,9 @@ import dcmjs from 'dcmjs';
|
||||
const { DicomMessage, DicomMetaDictionary } = dcmjs.data;
|
||||
const dicomlab2RGB = dcmjs.data.Colors.dicomlab2RGB;
|
||||
|
||||
/**
|
||||
* Checks and loads contour data for RT Structure Set, handling both inline and bulk data URIs.
|
||||
* Processes ROIContourSequence to extract contour data and resolve any bulk data references.
|
||||
*
|
||||
* @async
|
||||
* @function checkAndLoadContourData
|
||||
* @param {Object} params - Parameters object
|
||||
* @param {Object} params.instance - Initial RT Structure instance
|
||||
* @param {Object} params.dataSource - Data source for retrieving bulk data
|
||||
* @param {Object} params.extensionManager - OHIF extension manager
|
||||
* @param {Object} params.rtStructDisplaySet - RT Structure display set
|
||||
* @param {Object} params.headers - HTTP headers for requests
|
||||
* @returns {Promise<Object>} Promise that resolves to the processed RT Structure instance with loaded contour data
|
||||
* @throws {Promise<string>} Rejects with error message if instance is invalid or data retrieval fails
|
||||
*/
|
||||
async function checkAndLoadContourData({
|
||||
instance: initialInstance,
|
||||
dataSource,
|
||||
extensionManager,
|
||||
rtStructDisplaySet,
|
||||
headers,
|
||||
}) {
|
||||
let instance = initialInstance;
|
||||
async function checkAndLoadContourData(instance, datasource) {
|
||||
if (!instance || !instance.ROIContourSequence) {
|
||||
instance = await getRTStructInstance({ extensionManager, rtStructDisplaySet, headers });
|
||||
if (!instance || !instance.ROIContourSequence) {
|
||||
return Promise.reject('Invalid instance object or ROIContourSequence');
|
||||
}
|
||||
return Promise.reject('Invalid instance object or ROIContourSequence');
|
||||
}
|
||||
|
||||
const promisesMap = new Map();
|
||||
@@ -55,11 +30,11 @@ async function checkAndLoadContourData({
|
||||
} else if (contourData && contourData.BulkDataURI) {
|
||||
const bulkDataURI = contourData.BulkDataURI;
|
||||
|
||||
if (!dataSource || !dataSource.retrieve || !dataSource.retrieve.bulkDataURI) {
|
||||
return Promise.reject('Invalid dataSource object or retrieve function');
|
||||
if (!datasource || !datasource.retrieve || !datasource.retrieve.bulkDataURI) {
|
||||
return Promise.reject('Invalid datasource object or retrieve function');
|
||||
}
|
||||
|
||||
const bulkDataPromise = dataSource.retrieve.bulkDataURI({
|
||||
const bulkDataPromise = datasource.retrieve.bulkDataURI({
|
||||
BulkDataURI: bulkDataURI,
|
||||
StudyInstanceUID: instance.StudyInstanceUID,
|
||||
SeriesInstanceUID: instance.SeriesInstanceUID,
|
||||
@@ -69,40 +44,6 @@ async function checkAndLoadContourData({
|
||||
promisesMap.has(referencedROINumber)
|
||||
? promisesMap.get(referencedROINumber).push(bulkDataPromise)
|
||||
: promisesMap.set(referencedROINumber, [bulkDataPromise]);
|
||||
} else if (contourData && contourData.InlineBinary) {
|
||||
// Contour data is still in binary format, conversion needed
|
||||
const base64String = contourData.InlineBinary;
|
||||
const decodedText = atob(base64String);
|
||||
|
||||
const rawValues = decodedText.split('\\');
|
||||
|
||||
const result = [];
|
||||
|
||||
// Ensure strictly that we have a full set of 3 coordinates
|
||||
if (rawValues.length % 3 !== 0) {
|
||||
return Promise.reject('ContourData raw values not divisible by 3');
|
||||
}
|
||||
|
||||
for (let i = 0; i < rawValues.length; i += 3) {
|
||||
if (i + 2 < rawValues.length) {
|
||||
const x = parseFloat(rawValues[i]);
|
||||
const y = parseFloat(rawValues[i + 1]);
|
||||
const z = parseFloat(rawValues[i + 2]);
|
||||
|
||||
// Only push if all three are valid numbers (filters out trailing empty splits)
|
||||
if (!isNaN(x) && !isNaN(y) && !isNaN(z)) {
|
||||
result.push(x);
|
||||
result.push(y);
|
||||
result.push(z);
|
||||
} else {
|
||||
return Promise.reject('Error parsing contourData from InlineBinary format');
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
promisesMap.has(referencedROINumber)
|
||||
? promisesMap.get(referencedROINumber).push(result)
|
||||
: promisesMap.set(referencedROINumber, [result]);
|
||||
} else {
|
||||
return Promise.reject(`Invalid ContourData: ${contourData}`);
|
||||
}
|
||||
@@ -123,12 +64,9 @@ async function checkAndLoadContourData({
|
||||
ROIContour.ContourSequence.forEach((Contour, index) => {
|
||||
const promise = resolvedPromises[index];
|
||||
if (promise.status === 'fulfilled') {
|
||||
if (
|
||||
Array.isArray(promise.value) &&
|
||||
promise.value.every(it => Number.isFinite(Number(it)))
|
||||
) {
|
||||
if (Array.isArray(promise.value) && promise.value.every(Number.isFinite)) {
|
||||
// If promise.value is already an array of numbers, use it directly
|
||||
Contour.ContourData = promise.value.map(Number);
|
||||
Contour.ContourData = promise.value;
|
||||
} else {
|
||||
// If the resolved promise value is a byte array (Blob), it needs to be decoded
|
||||
const uint8Array = new Uint8Array(promise.value);
|
||||
@@ -149,74 +87,35 @@ async function checkAndLoadContourData({
|
||||
console.error(error);
|
||||
}
|
||||
});
|
||||
|
||||
return instance;
|
||||
}
|
||||
|
||||
/**
|
||||
* Retrieves and parses RT Structure Set instance from DICOM data.
|
||||
* Uses the cornerstone utility module to load DICOM data and converts it to a naturalized dataset.
|
||||
*
|
||||
* @async
|
||||
* @function getRTStructInstance
|
||||
* @param {Object} params - Parameters object
|
||||
* @param {Object} params.extensionManager - OHIF extension manager
|
||||
* @param {Object} params.rtStructDisplaySet - RT Structure display set
|
||||
* @param {Object} params.headers - HTTP headers for requests
|
||||
* @returns {Promise<Object>} Promise that resolves to the parsed RT Structure dataset
|
||||
*/
|
||||
const getRTStructInstance = async ({ extensionManager, rtStructDisplaySet, headers }) => {
|
||||
export default async function loadRTStruct(extensionManager, rtStructDisplaySet, headers) {
|
||||
const utilityModule = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.utilityModule.common'
|
||||
);
|
||||
const { dicomLoaderService } = utilityModule.exports;
|
||||
const segArrayBuffer = await dicomLoaderService.findDicomDataPromise(
|
||||
rtStructDisplaySet,
|
||||
null,
|
||||
headers
|
||||
);
|
||||
const dicomData = DicomMessage.readFile(segArrayBuffer);
|
||||
const rtStructDataset = DicomMetaDictionary.naturalizeDataset(dicomData.dict);
|
||||
rtStructDataset._meta = DicomMetaDictionary.namifyDataset(dicomData.meta);
|
||||
return rtStructDataset;
|
||||
};
|
||||
|
||||
/**
|
||||
* Main function to load and process RT Structure Set data.
|
||||
* Creates a structure set object with ROI contours, metadata, and visualization properties.
|
||||
* Handles both bulk data URI and inline contour data scenarios.
|
||||
*
|
||||
* @async
|
||||
* @function loadRTStruct
|
||||
* @param {Object} extensionManager - OHIF extension manager
|
||||
* @param {Object} rtStructDisplaySet - RT Structure display set to process
|
||||
* @param {Object} headers - HTTP headers for data requests
|
||||
* @returns {Promise<Object>} Promise that resolves to a structure set object containing:
|
||||
* - StructureSetLabel: Label of the structure set
|
||||
* - SeriesInstanceUID: Series instance UID
|
||||
* - ROIContours: Array of ROI contour data with points and metadata
|
||||
* - visible: Visibility state
|
||||
* - ReferencedSOPInstanceUIDsSet: Set of referenced SOP instance UIDs
|
||||
*/
|
||||
export default async function loadRTStruct(extensionManager, rtStructDisplaySet, headers) {
|
||||
const dataSource = extensionManager.getActiveDataSource()[0];
|
||||
const { bulkDataURI } = dataSource.getConfig?.() || {};
|
||||
|
||||
const { dicomLoaderService } = utilityModule.exports;
|
||||
|
||||
// Set here is loading is asynchronous.
|
||||
// If this function throws its set back to false.
|
||||
rtStructDisplaySet.isLoaded = true;
|
||||
let instance = rtStructDisplaySet.instance;
|
||||
|
||||
if (!bulkDataURI || !bulkDataURI.enabled) {
|
||||
instance = await getRTStructInstance({ extensionManager, rtStructDisplaySet, headers });
|
||||
} else {
|
||||
instance = await checkAndLoadContourData({
|
||||
instance,
|
||||
dataSource,
|
||||
extensionManager,
|
||||
const segArrayBuffer = await dicomLoaderService.findDicomDataPromise(
|
||||
rtStructDisplaySet,
|
||||
headers,
|
||||
});
|
||||
null,
|
||||
headers
|
||||
);
|
||||
|
||||
const dicomData = DicomMessage.readFile(segArrayBuffer);
|
||||
const rtStructDataset = DicomMetaDictionary.naturalizeDataset(dicomData.dict);
|
||||
rtStructDataset._meta = DicomMetaDictionary.namifyDataset(dicomData.meta);
|
||||
instance = rtStructDataset;
|
||||
} else {
|
||||
await checkAndLoadContourData(instance, dataSource);
|
||||
}
|
||||
|
||||
const { StructureSetROISequence, ROIContourSequence, RTROIObservationsSequence } = instance;
|
||||
@@ -233,16 +132,21 @@ export default async function loadRTStruct(extensionManager, rtStructDisplaySet,
|
||||
for (let i = 0; i < ROIContourSequence.length; i++) {
|
||||
const ROIContour = ROIContourSequence[i];
|
||||
const { ContourSequence } = ROIContour;
|
||||
|
||||
if (!ContourSequence) {
|
||||
continue;
|
||||
}
|
||||
|
||||
const isSupported = false;
|
||||
|
||||
const ContourSequenceArray = _toArray(ContourSequence);
|
||||
|
||||
const contourPoints = [];
|
||||
for (const ContourSequenceItem of ContourSequenceArray) {
|
||||
for (let c = 0; c < ContourSequenceArray.length; c++) {
|
||||
const { ContourData, NumberOfContourPoints, ContourGeometricType, ContourImageSequence } =
|
||||
ContourSequenceItem;
|
||||
ContourSequenceArray[c];
|
||||
|
||||
let isSupported = false;
|
||||
|
||||
const points = [];
|
||||
for (let p = 0; p < NumberOfContourPoints * 3; p += 3) {
|
||||
@@ -253,18 +157,22 @@ export default async function loadRTStruct(extensionManager, rtStructDisplaySet,
|
||||
});
|
||||
}
|
||||
|
||||
const supportedContourTypesMap = new Map([
|
||||
['CLOSED_PLANAR', false],
|
||||
['OPEN_NONPLANAR', false],
|
||||
['OPEN_PLANAR', false],
|
||||
['POINT', true],
|
||||
]);
|
||||
switch (ContourGeometricType) {
|
||||
case 'CLOSED_PLANAR':
|
||||
case 'OPEN_PLANAR':
|
||||
case 'POINT':
|
||||
isSupported = true;
|
||||
|
||||
break;
|
||||
default:
|
||||
continue;
|
||||
}
|
||||
|
||||
contourPoints.push({
|
||||
numberOfPoints: NumberOfContourPoints,
|
||||
points,
|
||||
type: ContourGeometricType,
|
||||
isSupported: supportedContourTypesMap.get(ContourGeometricType) ?? false,
|
||||
isSupported,
|
||||
});
|
||||
|
||||
if (ContourImageSequence?.ReferencedSOPInstanceUID) {
|
||||
@@ -279,30 +187,20 @@ export default async function loadRTStruct(extensionManager, rtStructDisplaySet,
|
||||
StructureSetROISequence,
|
||||
RTROIObservationsSequence,
|
||||
ROIContour,
|
||||
contourPoints
|
||||
contourPoints,
|
||||
isSupported
|
||||
);
|
||||
}
|
||||
return structureSet;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets metadata for ROI contour data and adds it to the structure set.
|
||||
* Extracts ROI information from StructureSetROISequence and RTROIObservationsSequence,
|
||||
* then creates a complete ROI contour data object with visualization properties.
|
||||
*
|
||||
* @function _setROIContourMetadata
|
||||
* @param {Object} structureSet - The structure set object to add ROI contour to
|
||||
* @param {Array} StructureSetROISequence - Array of structure set ROI definitions
|
||||
* @param {Array} RTROIObservationsSequence - Array of RT ROI observations
|
||||
* @param {Object} ROIContour - ROI contour object containing contour data
|
||||
* @param {Array} contourPoints - Array of processed contour points
|
||||
*/
|
||||
function _setROIContourMetadata(
|
||||
structureSet,
|
||||
StructureSetROISequence,
|
||||
RTROIObservationsSequence,
|
||||
ROIContour,
|
||||
contourPoints
|
||||
contourPoints,
|
||||
isSupported
|
||||
) {
|
||||
const StructureSetROI = StructureSetROISequence.find(
|
||||
structureSetROI => structureSetROI.ROINumber === ROIContour.ReferencedROINumber
|
||||
@@ -313,9 +211,9 @@ function _setROIContourMetadata(
|
||||
ROIName: StructureSetROI.ROIName,
|
||||
ROIGenerationAlgorithm: StructureSetROI.ROIGenerationAlgorithm,
|
||||
ROIDescription: StructureSetROI.ROIDescription,
|
||||
isSupported,
|
||||
contourPoints,
|
||||
visible: true,
|
||||
colorArray: [],
|
||||
};
|
||||
|
||||
_setROIContourDataColor(ROIContour, ROIContourData);
|
||||
@@ -332,14 +230,6 @@ function _setROIContourMetadata(
|
||||
structureSet.ROIContours.push(ROIContourData);
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets the display color for ROI contour data.
|
||||
* Uses ROIDisplayColor if available, otherwise converts RecommendedDisplayCIELabValue to RGB.
|
||||
*
|
||||
* @function _setROIContourDataColor
|
||||
* @param {Object} ROIContour - ROI contour object containing color information
|
||||
* @param {Object} ROIContourData - ROI contour data object to set color on
|
||||
*/
|
||||
function _setROIContourDataColor(ROIContour, ROIContourData) {
|
||||
let { ROIDisplayColor, RecommendedDisplayCIELabValue } = ROIContour;
|
||||
|
||||
@@ -353,15 +243,6 @@ function _setROIContourDataColor(ROIContour, ROIContourData) {
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets RT ROI observations metadata for ROI contour data.
|
||||
* Finds matching RTROIObservations by ROINumber and adds observation details to contour data.
|
||||
*
|
||||
* @function _setROIContourRTROIObservations
|
||||
* @param {Object} ROIContourData - ROI contour data object to add observations to
|
||||
* @param {Array} RTROIObservationsSequence - Array of RT ROI observations
|
||||
* @param {number} ROINumber - ROI number to match observations
|
||||
*/
|
||||
function _setROIContourRTROIObservations(ROIContourData, RTROIObservationsSequence, ROINumber) {
|
||||
const RTROIObservations = RTROIObservationsSequence.find(
|
||||
RTROIObservations => RTROIObservations.ReferencedROINumber === ROINumber
|
||||
@@ -381,14 +262,6 @@ function _setROIContourRTROIObservations(ROIContourData, RTROIObservationsSequen
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Converts a single object or array to an array.
|
||||
* Utility function to ensure consistent array handling for DICOM sequences.
|
||||
*
|
||||
* @function _toArray
|
||||
* @param {*} objOrArray - Object or array to convert
|
||||
* @returns {Array} Array containing the input (if already array) or wrapped in array
|
||||
*/
|
||||
function _toArray(objOrArray) {
|
||||
return Array.isArray(objOrArray) ? objOrArray : [objOrArray];
|
||||
}
|
||||
@@ -1,4 +1,8 @@
|
||||
import { utils, Types } from '@ohif/extension-cornerstone';
|
||||
const RESPONSE = {
|
||||
NO_NEVER: -1,
|
||||
CANCEL: 0,
|
||||
HYDRATE_SEG: 5,
|
||||
};
|
||||
|
||||
function promptHydrateRT({
|
||||
servicesManager,
|
||||
@@ -6,20 +10,74 @@ function promptHydrateRT({
|
||||
viewportId,
|
||||
preHydrateCallbacks,
|
||||
hydrateRTDisplaySet,
|
||||
}: {
|
||||
servicesManager: AppTypes.ServicesManager;
|
||||
rtDisplaySet: AppTypes.DisplaySet;
|
||||
viewportId: string;
|
||||
preHydrateCallbacks?: Types.HydrationCallback[];
|
||||
hydrateRTDisplaySet: Types.HydrationCallback;
|
||||
}) {
|
||||
return utils.promptHydrationDialog({
|
||||
servicesManager,
|
||||
viewportId,
|
||||
displaySet: rtDisplaySet,
|
||||
preHydrateCallbacks,
|
||||
hydrateCallback: hydrateRTDisplaySet,
|
||||
type: 'RTSTRUCT',
|
||||
}: withAppTypes) {
|
||||
const { uiViewportDialogService, customizationService } = servicesManager.services;
|
||||
const extensionManager = servicesManager._extensionManager;
|
||||
const appConfig = extensionManager._appConfig;
|
||||
return new Promise(async function (resolve, reject) {
|
||||
const promptResult = appConfig?.disableConfirmationPrompts
|
||||
? RESPONSE.HYDRATE_SEG
|
||||
: await _askHydrate(uiViewportDialogService, customizationService, viewportId);
|
||||
|
||||
if (promptResult === RESPONSE.HYDRATE_SEG) {
|
||||
preHydrateCallbacks?.forEach(callback => {
|
||||
callback();
|
||||
});
|
||||
|
||||
const isHydrated = await hydrateRTDisplaySet({
|
||||
rtDisplaySet,
|
||||
viewportId,
|
||||
servicesManager,
|
||||
});
|
||||
|
||||
resolve(isHydrated);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
function _askHydrate(
|
||||
uiViewportDialogService: AppTypes.UIViewportDialogService,
|
||||
customizationService: AppTypes.CustomizationService,
|
||||
viewportId
|
||||
) {
|
||||
return new Promise(function (resolve, reject) {
|
||||
const message = customizationService.getCustomization('viewportNotification.hydrateRTMessage');
|
||||
const actions = [
|
||||
{
|
||||
id: 'no-hydrate',
|
||||
type: 'secondary',
|
||||
text: 'No',
|
||||
value: RESPONSE.CANCEL,
|
||||
},
|
||||
{
|
||||
id: 'yes-hydrate',
|
||||
type: 'primary',
|
||||
text: 'Yes',
|
||||
value: RESPONSE.HYDRATE_SEG,
|
||||
},
|
||||
];
|
||||
const onSubmit = result => {
|
||||
uiViewportDialogService.hide();
|
||||
resolve(result);
|
||||
};
|
||||
|
||||
uiViewportDialogService.show({
|
||||
id: 'promptHydrateRT',
|
||||
viewportId,
|
||||
type: 'info',
|
||||
message,
|
||||
actions,
|
||||
onSubmit,
|
||||
onOutsideClick: () => {
|
||||
uiViewportDialogService.hide();
|
||||
resolve(RESPONSE.CANCEL);
|
||||
},
|
||||
onKeyPress: event => {
|
||||
if (event.key === 'Enter') {
|
||||
onSubmit(RESPONSE.HYDRATE_SEG);
|
||||
}
|
||||
},
|
||||
});
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
@@ -1,27 +1,35 @@
|
||||
import React, { Component, useCallback, useEffect, useRef, useState } from 'react';
|
||||
import React, { useCallback, useEffect, useRef, useState } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { ViewportActionArrows } from '@ohif/ui-next';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import {
|
||||
utils,
|
||||
usePositionPresentationStore,
|
||||
OHIFCornerstoneViewport,
|
||||
} from '@ohif/extension-cornerstone';
|
||||
import { utils } from '@ohif/extension-cornerstone';
|
||||
|
||||
import promptHydrateRT from '../utils/promptHydrateRT';
|
||||
import _getStatusComponent from './_getStatusComponent';
|
||||
|
||||
import createRTToolGroupAndAddTools from '../utils/initRTToolGroup';
|
||||
import { useSystem } from '@ohif/core/src';
|
||||
import { usePositionPresentationStore } from '@ohif/extension-cornerstone';
|
||||
|
||||
const RT_TOOLGROUP_BASE_NAME = 'RTToolGroup';
|
||||
|
||||
function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
const { servicesManager, commandsManager } = useSystem();
|
||||
const { children, displaySets, viewportOptions } = props as {
|
||||
children: React.ReactNode;
|
||||
displaySets: AppTypes.DisplaySet[];
|
||||
viewportOptions: AppTypes.ViewportOptions;
|
||||
};
|
||||
const {
|
||||
children,
|
||||
displaySets,
|
||||
viewportOptions,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
commandsManager,
|
||||
} = props;
|
||||
|
||||
const { displaySetService, toolGroupService, segmentationService, customizationService } =
|
||||
servicesManager.services;
|
||||
const {
|
||||
displaySetService,
|
||||
toolGroupService,
|
||||
segmentationService,
|
||||
uiNotificationService,
|
||||
customizationService,
|
||||
viewportActionCornersService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
|
||||
@@ -38,34 +46,31 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
|
||||
const rtDisplaySet = displaySets[0];
|
||||
|
||||
const [{ viewports, activeViewportId }, viewportGridService] = useViewportGrid();
|
||||
const [viewportGrid, viewportGridService] = useViewportGrid();
|
||||
|
||||
// States
|
||||
const selectedSegmentObjectIndex: number = 0;
|
||||
const { setPositionPresentation } = usePositionPresentationStore();
|
||||
|
||||
// Hydration means that the RT is opened and segments are loaded into the
|
||||
// segmentation panel, and RT is also rendered on any viewport that is in the
|
||||
// same frameOfReferenceUID as the referencedSeriesUID of the RT. However,
|
||||
// loading basically means RT loading over network and bit unpacking of the
|
||||
// RT data.
|
||||
const [isHydrated, setIsHydrated] = useState(rtDisplaySet.isHydrated);
|
||||
const [rtIsLoading, setRtIsLoading] = useState(!rtDisplaySet.isLoaded);
|
||||
const [element, setElement] = useState(null);
|
||||
const [processingProgress, setProcessingProgress] = useState({
|
||||
percentComplete: null,
|
||||
totalSegments: null,
|
||||
});
|
||||
|
||||
// refs
|
||||
const referencedDisplaySetRef = useRef(null);
|
||||
|
||||
const { viewports, activeViewportId } = viewportGrid;
|
||||
|
||||
const referencedDisplaySetInstanceUID = rtDisplaySet.referencedDisplaySetInstanceUID;
|
||||
// If the referencedDisplaySetInstanceUID is not found, it means the RTStruct series is being
|
||||
// launched without its corresponding referenced display set (e.g., the RTStruct series is launched using
|
||||
// series launch /mode?StudyInstanceUIDs=&SeriesInstanceUID).
|
||||
// In such cases, we attempt to handle this scenario gracefully by
|
||||
// invoking a custom handler. Ideally, if a user tries to launch a series that isn't viewable,
|
||||
// (eg.: we can prompt them with an explanation and provide a link to the full study).
|
||||
if (!referencedDisplaySetInstanceUID) {
|
||||
const missingReferenceDisplaySetHandler = customizationService.getCustomization(
|
||||
'missingReferenceDisplaySetHandler'
|
||||
);
|
||||
const { handled } = missingReferenceDisplaySetHandler();
|
||||
if (handled) {
|
||||
return;
|
||||
}
|
||||
}
|
||||
const referencedDisplaySet = displaySetService.getDisplaySetByUID(
|
||||
referencedDisplaySetInstanceUID
|
||||
);
|
||||
@@ -75,35 +80,104 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
displaySet: referencedDisplaySet,
|
||||
metadata: referencedDisplaySetMetadata,
|
||||
};
|
||||
/**
|
||||
* OnElementEnabled callback which is called after the cornerstoneExtension
|
||||
* has enabled the element. Note: we delegate all the image rendering to
|
||||
* cornerstoneExtension, so we don't need to do anything here regarding
|
||||
* the image rendering, element enabling etc.
|
||||
*/
|
||||
const onElementEnabled = evt => {
|
||||
setElement(evt.detail.element);
|
||||
};
|
||||
|
||||
const onElementDisabled = () => {
|
||||
setElement(null);
|
||||
};
|
||||
|
||||
const storePresentationState = useCallback(() => {
|
||||
viewportGrid?.viewports.forEach(({ viewportId }) => {
|
||||
commandsManager.runCommand('storePresentation', {
|
||||
viewportId,
|
||||
});
|
||||
});
|
||||
}, [viewportGrid]);
|
||||
|
||||
const hydrateRTDisplaySet = useCallback(
|
||||
({ rtDisplaySet, viewportId }) => {
|
||||
commandsManager.runCommand('hydrateRTSDisplaySet', {
|
||||
displaySet: rtDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
},
|
||||
[commandsManager]
|
||||
);
|
||||
|
||||
const getCornerstoneViewport = useCallback(() => {
|
||||
const { component: Component } = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.viewportModule.cornerstone'
|
||||
);
|
||||
|
||||
const { displaySet: referencedDisplaySet } = referencedDisplaySetRef.current;
|
||||
|
||||
// Todo: jump to the center of the first segment
|
||||
return (
|
||||
<Component
|
||||
{...props}
|
||||
displaySets={[referencedDisplaySet, rtDisplaySet]}
|
||||
viewportOptions={{
|
||||
viewportType: 'stack',
|
||||
toolGroupId: toolGroupId,
|
||||
orientation: viewportOptions.orientation,
|
||||
viewportId: viewportOptions.viewportId,
|
||||
presentationIds: viewportOptions.presentationIds,
|
||||
}}
|
||||
onElementEnabled={evt => {
|
||||
props.onElementEnabled?.(evt);
|
||||
onElementEnabled(evt);
|
||||
}}
|
||||
onElementDisabled={onElementDisabled}
|
||||
></Component>
|
||||
);
|
||||
}, [viewportId, rtDisplaySet, toolGroupId]);
|
||||
|
||||
const onSegmentChange = useCallback(
|
||||
direction => {
|
||||
utils.handleSegmentChange({
|
||||
direction,
|
||||
segDisplaySet: rtDisplaySet,
|
||||
viewportId,
|
||||
selectedSegmentObjectIndex,
|
||||
segmentationService,
|
||||
});
|
||||
},
|
||||
[selectedSegmentObjectIndex]
|
||||
);
|
||||
|
||||
useEffect(() => {
|
||||
if (rtIsLoading) {
|
||||
return;
|
||||
}
|
||||
|
||||
// if not active viewport, return
|
||||
if (viewportId !== activeViewportId) {
|
||||
return;
|
||||
}
|
||||
|
||||
promptHydrateRT({
|
||||
servicesManager,
|
||||
viewportId,
|
||||
rtDisplaySet,
|
||||
hydrateRTDisplaySet: async () => {
|
||||
return commandsManager.runCommand('hydrateSecondaryDisplaySet', {
|
||||
displaySet: rtDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
},
|
||||
preHydrateCallbacks: [storePresentationState],
|
||||
hydrateRTDisplaySet,
|
||||
}).then(isHydrated => {
|
||||
if (isHydrated) {
|
||||
setIsHydrated(true);
|
||||
}
|
||||
});
|
||||
}, [servicesManager, viewportId, rtDisplaySet, rtIsLoading, commandsManager, activeViewportId]);
|
||||
}, [servicesManager, viewportId, rtDisplaySet, rtIsLoading]);
|
||||
|
||||
useEffect(() => {
|
||||
// I'm not sure what is this, since in RT we support Overlapping segments
|
||||
// via contours
|
||||
const { unsubscribe } = segmentationService.subscribe(
|
||||
segmentationService.EVENTS.SEGMENTATION_LOADING_COMPLETE,
|
||||
evt => {
|
||||
if (evt.rtDisplaySet?.displaySetInstanceUID === rtDisplaySet.displaySetInstanceUID) {
|
||||
if (evt.rtDisplaySet.displaySetInstanceUID === rtDisplaySet.displaySetInstanceUID) {
|
||||
setRtIsLoading(false);
|
||||
}
|
||||
|
||||
@@ -119,6 +193,14 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
viewPresentation: {},
|
||||
});
|
||||
}
|
||||
|
||||
if (evt.overlappingSegments) {
|
||||
uiNotificationService.show({
|
||||
title: 'Overlapping Segments',
|
||||
message: 'Overlapping segments detected which is not currently supported',
|
||||
type: 'warning',
|
||||
});
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
@@ -128,7 +210,7 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
}, [rtDisplaySet]);
|
||||
|
||||
useEffect(() => {
|
||||
const segmentLoadingSubscription = segmentationService.subscribe(
|
||||
const { unsubscribe } = segmentationService.subscribe(
|
||||
segmentationService.EVENTS.SEGMENT_LOADING_COMPLETE,
|
||||
({ percentComplete, numSegments }) => {
|
||||
setProcessingProgress({
|
||||
@@ -138,7 +220,16 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
}
|
||||
);
|
||||
|
||||
const displaySetsRemovedSubscription = displaySetService.subscribe(
|
||||
return () => {
|
||||
unsubscribe();
|
||||
};
|
||||
}, [rtDisplaySet]);
|
||||
|
||||
/**
|
||||
Cleanup the SEG viewport when the viewport is destroyed
|
||||
*/
|
||||
useEffect(() => {
|
||||
const onDisplaySetsRemovedSubscription = displaySetService.subscribe(
|
||||
displaySetService.EVENTS.DISPLAY_SETS_REMOVED,
|
||||
({ displaySetInstanceUIDs }) => {
|
||||
const activeViewport = viewports.get(activeViewportId);
|
||||
@@ -152,10 +243,9 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
);
|
||||
|
||||
return () => {
|
||||
segmentLoadingSubscription.unsubscribe();
|
||||
displaySetsRemovedSubscription.unsubscribe();
|
||||
onDisplaySetsRemovedSubscription.unsubscribe();
|
||||
};
|
||||
}, [rtDisplaySet, displaySetService, viewports, activeViewportId, viewportGridService]);
|
||||
}, []);
|
||||
|
||||
useEffect(() => {
|
||||
let toolGroup = toolGroupService.getToolGroup(toolGroupId);
|
||||
@@ -168,34 +258,39 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
|
||||
return () => {
|
||||
// remove the segmentation representations if seg displayset changed
|
||||
segmentationService.removeRepresentationsFromViewport(viewportId);
|
||||
referencedDisplaySetRef.current = null;
|
||||
segmentationService.removeSegmentationRepresentations(viewportId);
|
||||
|
||||
toolGroupService.destroyToolGroup(toolGroupId);
|
||||
};
|
||||
}, []);
|
||||
|
||||
const getCornerstoneViewport = useCallback(() => {
|
||||
const { displaySet: referencedDisplaySet } = referencedDisplaySetRef.current;
|
||||
useEffect(() => {
|
||||
setIsHydrated(rtDisplaySet.isHydrated);
|
||||
|
||||
// Todo: jump to the center of the first segment
|
||||
return (
|
||||
<OHIFCornerstoneViewport
|
||||
{...props}
|
||||
displaySets={[referencedDisplaySet, rtDisplaySet]}
|
||||
viewportOptions={{
|
||||
viewportType: viewportOptions.viewportType,
|
||||
toolGroupId: toolGroupId,
|
||||
orientation: viewportOptions.orientation,
|
||||
viewportId: viewportOptions.viewportId,
|
||||
presentationIds: viewportOptions.presentationIds,
|
||||
}}
|
||||
onElementEnabled={evt => {
|
||||
props.onElementEnabled?.(evt);
|
||||
}}
|
||||
/>
|
||||
);
|
||||
}, [viewportId, rtDisplaySet, toolGroupId]);
|
||||
return () => {
|
||||
// remove the segmentation representations if seg displayset changed
|
||||
segmentationService.removeSegmentationRepresentations(viewportId);
|
||||
referencedDisplaySetRef.current = null;
|
||||
};
|
||||
}, [rtDisplaySet]);
|
||||
|
||||
const onStatusClick = useCallback(async () => {
|
||||
// Before hydrating a RT and make it added to all viewports in the grid
|
||||
// that share the same frameOfReferenceUID, we need to store the viewport grid
|
||||
// presentation state, so that we can restore it after hydrating the RT. This is
|
||||
// required if the user has changed the viewport (other viewport than RT viewport)
|
||||
// presentation state (w/l and invert) and then opens the RT. If we don't store
|
||||
// the presentation state, the viewport will be reset to the default presentation
|
||||
storePresentationState();
|
||||
const isHydrated = await hydrateRTDisplaySet({
|
||||
rtDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
|
||||
setIsHydrated(isHydrated);
|
||||
}, [hydrateRTDisplaySet, rtDisplaySet, storePresentationState, viewportId]);
|
||||
|
||||
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
let childrenWithProps = null;
|
||||
|
||||
if (
|
||||
@@ -218,6 +313,43 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
});
|
||||
}
|
||||
|
||||
useEffect(() => {
|
||||
viewportActionCornersService.addComponents([
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportStatusComponent',
|
||||
component: _getStatusComponent({
|
||||
isHydrated,
|
||||
onStatusClick,
|
||||
}),
|
||||
indexPriority: -100,
|
||||
location: viewportActionCornersService.LOCATIONS.topLeft,
|
||||
},
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportActionArrowsComponent',
|
||||
component: (
|
||||
<ViewportActionArrows
|
||||
key="actionArrows"
|
||||
onArrowsClick={onSegmentChange}
|
||||
className={
|
||||
viewportId === activeViewportId ? 'visible' : 'invisible group-hover/pane:visible'
|
||||
}
|
||||
></ViewportActionArrows>
|
||||
),
|
||||
indexPriority: 0,
|
||||
location: viewportActionCornersService.LOCATIONS.topRight,
|
||||
},
|
||||
]);
|
||||
}, [
|
||||
activeViewportId,
|
||||
isHydrated,
|
||||
onSegmentChange,
|
||||
onStatusClick,
|
||||
viewportActionCornersService,
|
||||
viewportId,
|
||||
]);
|
||||
|
||||
return (
|
||||
<>
|
||||
<div className="relative flex h-full w-full flex-row overflow-hidden">
|
||||
|
||||
@@ -0,0 +1,59 @@
|
||||
import React from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { ViewportActionButton } from '@ohif/ui-next';
|
||||
import { Icons, Tooltip, TooltipTrigger, TooltipContent } from '@ohif/ui-next';
|
||||
|
||||
export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
let ToolTipMessage = null;
|
||||
let StatusIcon = null;
|
||||
|
||||
switch (isHydrated) {
|
||||
case true:
|
||||
StatusIcon = () => <Icons.ByName name="status-alert" />;
|
||||
ToolTipMessage = () => <div>This Segmentation is loaded in the segmentation panel</div>;
|
||||
break;
|
||||
case false:
|
||||
StatusIcon = () => (
|
||||
<Icons.ByName
|
||||
className="text-muted-foreground h-4 w-4"
|
||||
name="status-untracked"
|
||||
/>
|
||||
);
|
||||
ToolTipMessage = () => <div>Click LOAD to load RTSTRUCT.</div>;
|
||||
}
|
||||
|
||||
const StatusArea = () => {
|
||||
const { t } = useTranslation('Common');
|
||||
const loadStr = t('LOAD');
|
||||
|
||||
return (
|
||||
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
|
||||
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
|
||||
<StatusIcon />
|
||||
<span className="ml-1">RTSTRUCT</span>
|
||||
</div>
|
||||
{!isHydrated && (
|
||||
<ViewportActionButton onInteraction={onStatusClick}>{loadStr}</ViewportActionButton>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
{ToolTipMessage && (
|
||||
<Tooltip>
|
||||
<TooltipTrigger asChild>
|
||||
<span>
|
||||
<StatusArea />
|
||||
</span>
|
||||
</TooltipTrigger>
|
||||
<TooltipContent side="bottom">
|
||||
<ToolTipMessage />
|
||||
</TooltipContent>
|
||||
</Tooltip>
|
||||
)}
|
||||
{!ToolTipMessage && <StatusArea />}
|
||||
</>
|
||||
);
|
||||
}
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,5 +1,5 @@
|
||||
module.exports = {
|
||||
plugins: ['@babel/plugin-transform-class-properties'],
|
||||
plugins: ['@babel/plugin-proposal-class-properties'],
|
||||
env: {
|
||||
test: {
|
||||
presets: [
|
||||
@@ -15,7 +15,7 @@ module.exports = {
|
||||
'@babel/preset-react',
|
||||
],
|
||||
plugins: [
|
||||
'@babel/plugin-transform-object-rest-spread',
|
||||
'@babel/plugin-proposal-object-rest-spread',
|
||||
'@babel/plugin-syntax-dynamic-import',
|
||||
'@babel/plugin-transform-regenerator',
|
||||
'@babel/plugin-transform-runtime',
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-seg",
|
||||
"version": "3.13.0-beta.63",
|
||||
"version": "3.10.2",
|
||||
"description": "DICOM SEG read workflow",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -33,21 +33,22 @@
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.13.0-beta.63",
|
||||
"@ohif/extension-cornerstone": "3.13.0-beta.63",
|
||||
"@ohif/extension-default": "3.13.0-beta.63",
|
||||
"@ohif/i18n": "3.13.0-beta.63",
|
||||
"prop-types": "15.8.1",
|
||||
"react": "18.3.1",
|
||||
"react-dom": "18.3.1",
|
||||
"react-i18next": "12.3.1",
|
||||
"react-router": "6.30.3",
|
||||
"react-router-dom": "6.30.3"
|
||||
"@ohif/core": "3.10.2",
|
||||
"@ohif/extension-cornerstone": "3.10.2",
|
||||
"@ohif/extension-default": "3.10.2",
|
||||
"@ohif/i18n": "3.10.2",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^18.3.1",
|
||||
"react-dom": "^18.3.1",
|
||||
"react-i18next": "^12.2.2",
|
||||
"react-router": "^6.23.1",
|
||||
"react-router-dom": "^6.23.1"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "7.28.2",
|
||||
"@cornerstonejs/adapters": "4.21.7",
|
||||
"@cornerstonejs/core": "4.21.7",
|
||||
"@kitware/vtk.js": "34.15.1"
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^3.11.6",
|
||||
"@cornerstonejs/core": "^3.11.6",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"react-color": "^2.19.3"
|
||||
}
|
||||
}
|
||||
@@ -1,12 +1,15 @@
|
||||
import dcmjs from 'dcmjs';
|
||||
import { classes, Types, utils } from '@ohif/core';
|
||||
import { classes, Types } from '@ohif/core';
|
||||
import { cache, metaData } from '@cornerstonejs/core';
|
||||
import { segmentation as cornerstoneToolsSegmentation } from '@cornerstonejs/tools';
|
||||
import { adaptersRT, adaptersSEG } from '@cornerstonejs/adapters';
|
||||
import { createReportDialogPrompt, useUIStateStore } from '@ohif/extension-default';
|
||||
import { adaptersRT, helpers, adaptersSEG } from '@cornerstonejs/adapters';
|
||||
import { createReportDialogPrompt } from '@ohif/extension-default';
|
||||
import { DicomMetadataStore } from '@ohif/core';
|
||||
|
||||
import PROMPT_RESPONSES from '../../default/src/utils/_shared/PROMPT_RESPONSES';
|
||||
|
||||
const { datasetToBlob } = dcmjs.data;
|
||||
|
||||
const getTargetViewport = ({ viewportId, viewportGridService }) => {
|
||||
const { viewports, activeViewportId } = viewportGridService.getState();
|
||||
const targetViewportId = viewportId || activeViewportId;
|
||||
@@ -24,17 +27,17 @@ const {
|
||||
|
||||
const {
|
||||
Cornerstone3D: {
|
||||
RTSS: { generateRTSSFromRepresentation },
|
||||
RTSS: { generateRTSSFromSegmentations },
|
||||
},
|
||||
} = adaptersRT;
|
||||
|
||||
const { downloadDICOMData } = helpers;
|
||||
|
||||
const commandsModule = ({
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
commandsManager,
|
||||
}: Types.Extensions.ExtensionParams): Types.Extensions.CommandsModule => {
|
||||
const { segmentationService, displaySetService, viewportGridService } =
|
||||
const { segmentationService, displaySetService, viewportGridService, toolGroupService } =
|
||||
servicesManager.services as AppTypes.Services;
|
||||
|
||||
const actions = {
|
||||
@@ -89,7 +92,6 @@ const commandsModule = ({
|
||||
*/
|
||||
generateSegmentation: ({ segmentationId, options = {} }) => {
|
||||
const segmentation = cornerstoneToolsSegmentation.state.getSegmentation(segmentationId);
|
||||
const predecessorImageId = options.predecessorImageId ?? segmentation.predecessorImageId;
|
||||
|
||||
const { imageIds } = segmentation.representationData.Labelmap;
|
||||
|
||||
@@ -171,10 +173,12 @@ const commandsModule = ({
|
||||
labelmap3D.metadata[segmentIndex] = segmentMetadata;
|
||||
});
|
||||
|
||||
const generatedSegmentation = generateSegmentation(referencedImages, labelmap3D, metaData, {
|
||||
predecessorImageId,
|
||||
...options,
|
||||
});
|
||||
const generatedSegmentation = generateSegmentation(
|
||||
referencedImages,
|
||||
labelmap3D,
|
||||
metaData,
|
||||
options
|
||||
);
|
||||
|
||||
return generatedSegmentation;
|
||||
},
|
||||
@@ -193,11 +197,8 @@ const commandsModule = ({
|
||||
const generatedSegmentation = actions.generateSegmentation({
|
||||
segmentationId,
|
||||
});
|
||||
const storeFn = commandsManager.runCommand('createStoreFunction', {
|
||||
dataSource: 'download',
|
||||
defaultFileName: `${segmentationInOHIF.label}.dcm`,
|
||||
});
|
||||
storeFn(generatedSegmentation.dataset);
|
||||
|
||||
downloadDICOMData(generatedSegmentation.dataset, `${segmentationInOHIF.label}`);
|
||||
},
|
||||
/**
|
||||
* Stores a segmentation based on the provided segmentationId into a specified data source.
|
||||
@@ -211,84 +212,67 @@ const commandsModule = ({
|
||||
* @returns {Object|void} Returns the naturalized report if successfully stored,
|
||||
* otherwise throws an error.
|
||||
*/
|
||||
storeSegmentation: async ({ segmentationId, dataSource, modality = 'SEG' }) => {
|
||||
storeSegmentation: async ({ segmentationId, dataSource }) => {
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
if (!segmentation) {
|
||||
throw new Error('No segmentation found');
|
||||
}
|
||||
|
||||
const { label, predecessorImageId } = segmentation;
|
||||
const { label } = segmentation;
|
||||
const defaultDataSource = dataSource ?? extensionManager.getActiveDataSource();
|
||||
|
||||
const {
|
||||
value: reportName,
|
||||
dataSourceName,
|
||||
series,
|
||||
priorSeriesNumber,
|
||||
dataSourceName: selectedDataSource,
|
||||
action,
|
||||
} = await createReportDialogPrompt({
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
predecessorImageId,
|
||||
title: 'Store Segmentation',
|
||||
modality,
|
||||
enableDownload: true,
|
||||
});
|
||||
|
||||
if (action !== PROMPT_RESPONSES.CREATE_REPORT) {
|
||||
return;
|
||||
}
|
||||
if (action === PROMPT_RESPONSES.CREATE_REPORT) {
|
||||
try {
|
||||
const selectedDataSourceConfig = selectedDataSource
|
||||
? extensionManager.getDataSources(selectedDataSource)[0]
|
||||
: defaultDataSource;
|
||||
|
||||
const defaultFileName =
|
||||
modality === 'RTSTRUCT'
|
||||
? `rtss-${segmentationId}.dcm`
|
||||
: `${label || 'segmentation'}.dcm`;
|
||||
const generatedData = actions.generateSegmentation({
|
||||
segmentationId,
|
||||
options: {
|
||||
SeriesDescription: reportName || label || 'Research Derived Series',
|
||||
},
|
||||
});
|
||||
|
||||
const storeFn = commandsManager.runCommand('createStoreFunction', {
|
||||
dataSource: dataSourceName,
|
||||
defaultFileName,
|
||||
});
|
||||
if (!generatedData || !generatedData.dataset) {
|
||||
throw new Error('Error during segmentation generation');
|
||||
}
|
||||
|
||||
if (!storeFn) {
|
||||
throw new Error(`No valid store for dataSource: ${dataSourceName}`);
|
||||
}
|
||||
const { dataset: naturalizedReport } = generatedData;
|
||||
|
||||
try {
|
||||
const args = {
|
||||
segmentationId,
|
||||
options: {
|
||||
SeriesDescription: series ? undefined : reportName || label || 'Contour Series',
|
||||
SeriesNumber: series ? undefined : 1 + priorSeriesNumber,
|
||||
predecessorImageId: series,
|
||||
},
|
||||
};
|
||||
const generatedDataAsync =
|
||||
(modality === 'SEG' && actions.generateSegmentation(args)) ||
|
||||
(modality === 'RTSTRUCT' && actions.generateContour(args));
|
||||
const generatedData = await generatedDataAsync;
|
||||
await selectedDataSourceConfig.store.dicom(naturalizedReport);
|
||||
|
||||
if (!generatedData?.dataset) {
|
||||
throw new Error('Error during segmentation generation');
|
||||
// add the information for where we stored it to the instance as well
|
||||
naturalizedReport.wadoRoot = selectedDataSourceConfig.getConfig().wadoRoot;
|
||||
|
||||
DicomMetadataStore.addInstances([naturalizedReport], true);
|
||||
|
||||
return naturalizedReport;
|
||||
} catch (error) {
|
||||
console.debug('Error storing segmentation:', error);
|
||||
throw error;
|
||||
}
|
||||
|
||||
const { dataset: naturalizedReport } = generatedData;
|
||||
|
||||
// DCMJS assigns a dummy study id during creation, and this can cause problems, so clearing it out
|
||||
if (naturalizedReport.StudyID === 'No Study ID') {
|
||||
naturalizedReport.StudyID = '';
|
||||
}
|
||||
|
||||
await storeFn(naturalizedReport, {});
|
||||
|
||||
return naturalizedReport;
|
||||
} catch (error) {
|
||||
console.debug('Error storing segmentation:', error);
|
||||
throw error;
|
||||
}
|
||||
},
|
||||
|
||||
generateContour: async args => {
|
||||
const { segmentationId, options } = args;
|
||||
/**
|
||||
* Converts segmentations into RTSS for download.
|
||||
* This sample function retrieves all segentations and passes to
|
||||
* cornerstone tool adapter to convert to DICOM RTSS format. It then
|
||||
* converts dataset to downloadable blob.
|
||||
*
|
||||
*/
|
||||
downloadRTSS: async ({ segmentationId }) => {
|
||||
const segmentations = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
// inject colors to the segmentIndex
|
||||
@@ -298,51 +282,45 @@ const commandsModule = ({
|
||||
segment.color = segmentationService.getSegmentColor(
|
||||
firstRepresentation.viewportId,
|
||||
segmentationId,
|
||||
Number(segmentIndex)
|
||||
segmentIndex
|
||||
);
|
||||
});
|
||||
const predecessorImageId = options?.predecessorImageId ?? segmentations.predecessorImageId;
|
||||
const dataset = await generateRTSSFromRepresentation(segmentations, {
|
||||
predecessorImageId,
|
||||
...options,
|
||||
});
|
||||
return { dataset };
|
||||
},
|
||||
|
||||
/**
|
||||
* Downloads an RTSS instance from a segmentation or contour
|
||||
* representation.
|
||||
*/
|
||||
downloadRTSS: async args => {
|
||||
const { dataset } = await actions.generateContour(args);
|
||||
const { InstanceNumber: instanceNumber = 1, SeriesInstanceUID: seriesUID } = dataset;
|
||||
const storeFn = commandsManager.runCommand('createStoreFunction', {
|
||||
dataSource: 'download',
|
||||
defaultFileName: `rtss-${seriesUID}-${instanceNumber}.dcm`,
|
||||
});
|
||||
await storeFn(dataset);
|
||||
},
|
||||
const RTSS = await generateRTSSFromSegmentations(
|
||||
segmentations,
|
||||
classes.MetadataProvider,
|
||||
DicomMetadataStore
|
||||
);
|
||||
|
||||
toggleActiveSegmentationUtility: ({ itemId: buttonId }) => {
|
||||
const { uiState, setUIState } = useUIStateStore.getState();
|
||||
const isButtonActive = uiState['activeSegmentationUtility'] === buttonId;
|
||||
console.log('toggleActiveSegmentationUtility', isButtonActive, buttonId);
|
||||
// if the button is active, clear the active segmentation utility
|
||||
if (isButtonActive) {
|
||||
setUIState('activeSegmentationUtility', null);
|
||||
} else {
|
||||
setUIState('activeSegmentationUtility', buttonId);
|
||||
try {
|
||||
const reportBlob = datasetToBlob(RTSS);
|
||||
|
||||
//Create a URL for the binary.
|
||||
const objectUrl = URL.createObjectURL(reportBlob);
|
||||
window.location.assign(objectUrl);
|
||||
} catch (e) {
|
||||
console.warn(e);
|
||||
}
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
loadSegmentationsForViewport: actions.loadSegmentationsForViewport,
|
||||
generateSegmentation: actions.generateSegmentation,
|
||||
downloadSegmentation: actions.downloadSegmentation,
|
||||
storeSegmentation: actions.storeSegmentation,
|
||||
downloadRTSS: actions.downloadRTSS,
|
||||
toggleActiveSegmentationUtility: actions.toggleActiveSegmentationUtility,
|
||||
loadSegmentationsForViewport: {
|
||||
commandFn: actions.loadSegmentationsForViewport,
|
||||
},
|
||||
|
||||
generateSegmentation: {
|
||||
commandFn: actions.generateSegmentation,
|
||||
},
|
||||
downloadSegmentation: {
|
||||
commandFn: actions.downloadSegmentation,
|
||||
},
|
||||
storeSegmentation: {
|
||||
commandFn: actions.storeSegmentation,
|
||||
},
|
||||
downloadRTSS: {
|
||||
commandFn: actions.downloadRTSS,
|
||||
},
|
||||
};
|
||||
|
||||
return {
|
||||
|
||||
@@ -1,246 +0,0 @@
|
||||
import React, { useCallback, useEffect, useState } from 'react';
|
||||
import { useRunCommand, useSystem } from '@ohif/core';
|
||||
import { useActiveViewportSegmentationRepresentations } from '@ohif/extension-cornerstone';
|
||||
import {
|
||||
Button,
|
||||
cn,
|
||||
Input,
|
||||
Label,
|
||||
Select,
|
||||
SelectContent,
|
||||
SelectItem,
|
||||
SelectTrigger,
|
||||
SelectValue,
|
||||
Separator,
|
||||
Switch,
|
||||
Tabs,
|
||||
TabsList,
|
||||
TabsTrigger,
|
||||
} from '@ohif/ui-next';
|
||||
import { Icons } from '@ohif/ui-next';
|
||||
import { contourSegmentation } from '@cornerstonejs/tools/utilities';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { Segment } from '@cornerstonejs/tools/types';
|
||||
|
||||
const { LogicalOperation } = contourSegmentation;
|
||||
const options = [
|
||||
{
|
||||
value: 'merge',
|
||||
logicalOperation: LogicalOperation.Union,
|
||||
label: 'Merge',
|
||||
icon: 'actions-combine-merge',
|
||||
helperIcon: 'helper-combine-merge',
|
||||
},
|
||||
{
|
||||
value: 'intersect',
|
||||
logicalOperation: LogicalOperation.Intersect,
|
||||
label: 'Intersect',
|
||||
icon: 'actions-combine-intersect',
|
||||
helperIcon: 'helper-combine-intersect',
|
||||
},
|
||||
{
|
||||
value: 'subtract',
|
||||
logicalOperation: LogicalOperation.Subtract,
|
||||
label: 'Subtract',
|
||||
icon: 'actions-combine-subtract',
|
||||
helperIcon: 'helper-combine-subtract',
|
||||
},
|
||||
];
|
||||
|
||||
// Shared component for segment selection
|
||||
function SegmentSelector({
|
||||
label,
|
||||
value,
|
||||
onValueChange,
|
||||
segments,
|
||||
placeholder = 'Select a segment',
|
||||
}: {
|
||||
label: string;
|
||||
value: string;
|
||||
onValueChange: (value: string) => void;
|
||||
segments: Segment[];
|
||||
placeholder?: string;
|
||||
}) {
|
||||
const { t } = useTranslation('SegmentationPanel');
|
||||
return (
|
||||
<div className="flex justify-between gap-6">
|
||||
<div>{label}</div>
|
||||
<Select
|
||||
key={`select-segment-${label}`}
|
||||
onValueChange={onValueChange}
|
||||
value={value}
|
||||
>
|
||||
<SelectTrigger className="overflow-hidden">
|
||||
<SelectValue placeholder={t(placeholder)} />
|
||||
</SelectTrigger>
|
||||
<SelectContent>
|
||||
{segments.map(segment => (
|
||||
<SelectItem
|
||||
key={segment.segmentIndex}
|
||||
value={segment.segmentIndex.toString()}
|
||||
>
|
||||
{segment.label}
|
||||
</SelectItem>
|
||||
))}
|
||||
</SelectContent>
|
||||
</Select>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
function LogicalContourOperationOptions() {
|
||||
const { servicesManager } = useSystem();
|
||||
const { segmentationService } = servicesManager.services;
|
||||
const { t } = useTranslation('SegmentationPanel');
|
||||
const { segmentationsWithRepresentations } = useActiveViewportSegmentationRepresentations();
|
||||
|
||||
const activeRepresentation = segmentationsWithRepresentations?.find(
|
||||
({ representation }) => representation?.active
|
||||
);
|
||||
|
||||
const segments = activeRepresentation
|
||||
? Object.values(activeRepresentation.segmentation.segments)
|
||||
: [];
|
||||
|
||||
// Calculate the next available segment index
|
||||
const nextSegmentIndex = activeRepresentation
|
||||
? segmentationService.getNextAvailableSegmentIndex(
|
||||
activeRepresentation.segmentation.segmentationId
|
||||
)
|
||||
: 1;
|
||||
|
||||
const activeSegment = segments.find(segment => segment.active);
|
||||
|
||||
const activeSegmentIndex = activeSegment?.segmentIndex || 0;
|
||||
|
||||
const [operation, setOperation] = useState(options[0]);
|
||||
const [segmentA, setSegmentA] = useState<string>(activeSegmentIndex?.toString() || '');
|
||||
const [segmentB, setSegmentB] = useState<string>('');
|
||||
const [createNewSegment, setCreateNewSegment] = useState<boolean>(false);
|
||||
const [newSegmentName, setNewSegmentName] = useState<string>('');
|
||||
|
||||
useEffect(() => {
|
||||
setSegmentA(activeSegmentIndex?.toString() || null);
|
||||
}, [activeSegmentIndex]);
|
||||
|
||||
useEffect(() => {
|
||||
setNewSegmentName(`Segment ${nextSegmentIndex}`);
|
||||
}, [nextSegmentIndex]);
|
||||
|
||||
const runCommand = useRunCommand();
|
||||
|
||||
const applyLogicalContourOperation = useCallback(() => {
|
||||
let resultSegmentIndex = segmentA;
|
||||
if (createNewSegment) {
|
||||
resultSegmentIndex = nextSegmentIndex.toString();
|
||||
runCommand('addSegment', {
|
||||
segmentationId: activeRepresentation.segmentation.segmentationId,
|
||||
config: {
|
||||
label: newSegmentName,
|
||||
segmentIndex: nextSegmentIndex,
|
||||
},
|
||||
});
|
||||
}
|
||||
runCommand('applyLogicalContourOperation', {
|
||||
segmentAInfo: {
|
||||
segmentationId: activeRepresentation.segmentation.segmentationId,
|
||||
segmentIndex: parseInt(segmentA),
|
||||
},
|
||||
segmentBInfo: {
|
||||
segmentationId: activeRepresentation.segmentation.segmentationId,
|
||||
segmentIndex: parseInt(segmentB),
|
||||
},
|
||||
resultSegmentInfo: {
|
||||
segmentationId: activeRepresentation.segmentation.segmentationId,
|
||||
segmentIndex: parseInt(resultSegmentIndex),
|
||||
},
|
||||
logicalOperation: operation.logicalOperation,
|
||||
});
|
||||
}, [
|
||||
activeRepresentation?.segmentation?.segmentationId,
|
||||
createNewSegment,
|
||||
newSegmentName,
|
||||
nextSegmentIndex,
|
||||
operation.logicalOperation,
|
||||
runCommand,
|
||||
segmentA,
|
||||
segmentB,
|
||||
]);
|
||||
|
||||
return (
|
||||
<div className="flex w-[245px] flex-col gap-4">
|
||||
<div className="flex items-start justify-between">
|
||||
<div className="flex w-auto flex-col items-center gap-2 text-base font-normal leading-none">
|
||||
<Tabs value={operation.value}>
|
||||
<TabsList className="inline-flex space-x-1">
|
||||
{options.map(option => {
|
||||
const { value, icon } = option;
|
||||
return (
|
||||
<TabsTrigger
|
||||
value={value}
|
||||
key={`logical-contour-operation-${value}`}
|
||||
onClick={() => setOperation(option)}
|
||||
>
|
||||
<Icons.ByName name={icon}></Icons.ByName>
|
||||
</TabsTrigger>
|
||||
);
|
||||
})}
|
||||
</TabsList>
|
||||
</Tabs>
|
||||
<div>{t(operation.label)}</div>
|
||||
</div>
|
||||
<div className="bg-muted flex h-[62px] w-[88px] items-center justify-center rounded-lg">
|
||||
<Icons.ByName name={operation.helperIcon}></Icons.ByName>
|
||||
</div>
|
||||
</div>
|
||||
<SegmentSelector
|
||||
label="A"
|
||||
value={segmentA}
|
||||
onValueChange={setSegmentA}
|
||||
segments={segments}
|
||||
/>
|
||||
<SegmentSelector
|
||||
label="B"
|
||||
value={segmentB}
|
||||
onValueChange={setSegmentB}
|
||||
segments={segments}
|
||||
/>
|
||||
<div className="flex justify-end pl-[34px]">
|
||||
<Button
|
||||
className="border-primary/60 grow border"
|
||||
variant="ghost"
|
||||
onClick={() => {
|
||||
applyLogicalContourOperation();
|
||||
}}
|
||||
>
|
||||
{t(operation.label)}
|
||||
</Button>
|
||||
</div>
|
||||
<Separator className="bg-input mt-2 h-[1px]" />
|
||||
<div className="flex flex-col gap-2">
|
||||
<div className="flex items-center justify-start gap-2">
|
||||
<Switch
|
||||
id="logical-contour-operations-create-new-segment-switch"
|
||||
onCheckedChange={setCreateNewSegment}
|
||||
></Switch>
|
||||
<Label htmlFor="logical-contour-operations-create-new-segment-switch">
|
||||
{t('Create a new segment')}
|
||||
</Label>
|
||||
</div>
|
||||
<div className="pl-9">
|
||||
<Input
|
||||
className={cn(createNewSegment ? 'visible' : 'hidden')}
|
||||
disabled={!createNewSegment}
|
||||
id="logical-contour-operations-create-new-segment-input"
|
||||
type="text"
|
||||
placeholder={t('New segment name')}
|
||||
value={newSegmentName}
|
||||
onChange={e => setNewSegmentName(e.target.value)}
|
||||
/>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
export default LogicalContourOperationOptions;
|
||||
@@ -1,73 +0,0 @@
|
||||
import React, { useState } from 'react';
|
||||
import { Button, Input, Label, Separator } from '@ohif/ui-next';
|
||||
import { useRunCommand } from '@ohif/core';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
|
||||
function SimplifyContourOptions() {
|
||||
const [areaThreshold, setAreaThreshold] = useState(10);
|
||||
|
||||
const runCommand = useRunCommand();
|
||||
const { t } = useTranslation('SegmentationPanel');
|
||||
|
||||
return (
|
||||
<div className="flex w-auto w-[252px] flex-col gap-[8px] text-base font-normal leading-none">
|
||||
<div className="flex w-auto flex-col gap-[10px] text-base font-normal leading-none">
|
||||
<div>{t('Fill contour holes')}</div>
|
||||
<Button
|
||||
className="border-primary/60 border"
|
||||
variant="ghost"
|
||||
onClick={() => {
|
||||
runCommand('removeContourHoles');
|
||||
}}
|
||||
>
|
||||
{t('Fill Holes')}
|
||||
</Button>
|
||||
<Separator className="bg-input mt-[20px] h-[1px]" />
|
||||
</div>
|
||||
<div className="flex w-auto flex-col gap-[10px] text-base font-normal leading-none">
|
||||
<div>{t('Remove Small Contours')}</div>
|
||||
<div className="flex items-center gap-2 self-end">
|
||||
<Label
|
||||
htmlFor="simplify-contour-options"
|
||||
className="text-muted-foreground"
|
||||
>
|
||||
{t('Area Threshold')}
|
||||
</Label>
|
||||
<Input
|
||||
id="simplify-contour-options"
|
||||
className="w-20"
|
||||
type="number"
|
||||
value={areaThreshold}
|
||||
onChange={e => setAreaThreshold(Number(e.target.value))}
|
||||
/>
|
||||
</div>
|
||||
<Button
|
||||
className="border-primary/60 border"
|
||||
variant="ghost"
|
||||
onClick={() => {
|
||||
runCommand('removeSmallContours', {
|
||||
areaThreshold,
|
||||
});
|
||||
}}
|
||||
>
|
||||
{t('Remove Small Contours')}
|
||||
</Button>
|
||||
<Separator className="bg-input mt-[20px] h-[1px]" />
|
||||
</div>
|
||||
<div className="flex w-auto flex-col gap-[10px] text-base font-normal leading-none">
|
||||
<div>{t('Create New Segment from Holes')}</div>
|
||||
<Button
|
||||
className="border-primary/60 border"
|
||||
variant="ghost"
|
||||
onClick={() => {
|
||||
runCommand('convertContourHoles');
|
||||
}}
|
||||
>
|
||||
{t('Create New Segment')}
|
||||
</Button>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
export default SimplifyContourOptions;
|
||||
@@ -1,41 +0,0 @@
|
||||
import React from 'react';
|
||||
import { Button, Separator } from '@ohif/ui-next';
|
||||
import { useRunCommand } from '@ohif/core';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
|
||||
function SmoothContoursOptions() {
|
||||
const runCommand = useRunCommand();
|
||||
const { t } = useTranslation('SegmentationPanel');
|
||||
|
||||
return (
|
||||
<div className="flex w-auto w-[245px] flex-col gap-[8px] text-base font-normal leading-none">
|
||||
<div className="flex w-auto flex-col gap-[10px] text-base font-normal leading-none">
|
||||
<div>{t('Smooth all edges')}</div>
|
||||
<Button
|
||||
className="border-primary/60 border"
|
||||
variant="ghost"
|
||||
onClick={() => {
|
||||
runCommand('smoothContours');
|
||||
}}
|
||||
>
|
||||
{t('Smooth Edges')}
|
||||
</Button>
|
||||
<Separator className="bg-input mt-[20px] h-[1px]" />
|
||||
</div>
|
||||
<div className="flex w-auto flex-col gap-[10px] text-base font-normal leading-none">
|
||||
<div>{t('Remove extra points')}</div>
|
||||
<Button
|
||||
className="border-primary/60 border"
|
||||
variant="ghost"
|
||||
onClick={() => {
|
||||
runCommand('decimateContours');
|
||||
}}
|
||||
>
|
||||
{t('Remove Points')}
|
||||
</Button>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
export default SmoothContoursOptions;
|
||||
@@ -1,13 +1,12 @@
|
||||
import { utils, Types as OhifTypes } from '@ohif/core';
|
||||
import i18n from '@ohif/i18n';
|
||||
import { metaData, eventTarget } from '@cornerstonejs/core';
|
||||
import { utils } from '@ohif/core';
|
||||
import { metaData, triggerEvent, eventTarget } from '@cornerstonejs/core';
|
||||
import { CONSTANTS, segmentation as cstSegmentation } from '@cornerstonejs/tools';
|
||||
import { adaptersSEG, Enums } from '@cornerstonejs/adapters';
|
||||
|
||||
import { SOPClassHandlerId } from './id';
|
||||
import { dicomlabToRGB } from './utils/dicomlabToRGB';
|
||||
|
||||
const sopClassUids = ['1.2.840.10008.5.1.4.1.1.66.4', '1.2.840.10008.5.1.4.1.1.66.7'];
|
||||
const sopClassUids = ['1.2.840.10008.5.1.4.1.1.66.4'];
|
||||
|
||||
const loadPromises = {};
|
||||
|
||||
@@ -16,41 +15,34 @@ function _getDisplaySetsFromSeries(
|
||||
servicesManager: AppTypes.ServicesManager,
|
||||
extensionManager
|
||||
) {
|
||||
utils.sortStudyInstances(instances);
|
||||
|
||||
// Choose the LAST instance in the list as the most recently created one.
|
||||
const instance = instances[instances.length - 1];
|
||||
const instance = instances[0];
|
||||
|
||||
const {
|
||||
StudyInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
SOPInstanceUID,
|
||||
SeriesDescription = '',
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
SeriesDate,
|
||||
StructureSetDate,
|
||||
SOPClassUID,
|
||||
FrameOfReferenceUID,
|
||||
wadoRoot,
|
||||
wadoUri,
|
||||
wadoUriRoot,
|
||||
imageId: predecessorImageId,
|
||||
} = instance;
|
||||
|
||||
const displaySet = {
|
||||
Modality: 'SEG',
|
||||
loading: false,
|
||||
isReconstructable: false,
|
||||
isReconstructable: true, // by default for now since it is a volumetric SEG currently
|
||||
displaySetInstanceUID: utils.guid(),
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
SeriesDate: SeriesDate || StructureSetDate || '',
|
||||
SeriesDate,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
SOPClassHandlerId,
|
||||
SOPClassUID,
|
||||
FrameOfReferenceUID,
|
||||
referencedImages: null,
|
||||
referencedSeriesInstanceUID: null,
|
||||
referencedDisplaySetInstanceUID: null,
|
||||
@@ -60,13 +52,11 @@ function _getDisplaySetsFromSeries(
|
||||
segments: {},
|
||||
sopClassUids,
|
||||
instance,
|
||||
predecessorImageId,
|
||||
instances: [instance],
|
||||
wadoRoot,
|
||||
wadoUriRoot,
|
||||
wadoUri,
|
||||
isOverlayDisplaySet: true,
|
||||
label: SeriesDescription || `${i18n.t('Series')} ${SeriesNumber} - ${i18n.t('SEG')}`,
|
||||
};
|
||||
|
||||
const referencedSeriesSequence = instance.ReferencedSeriesSequence;
|
||||
@@ -81,16 +71,10 @@ function _getDisplaySetsFromSeries(
|
||||
displaySet.referencedImages = instance.ReferencedSeriesSequence.ReferencedInstanceSequence;
|
||||
displaySet.referencedSeriesInstanceUID = referencedSeries.SeriesInstanceUID;
|
||||
const { displaySetService } = servicesManager.services;
|
||||
const referencedDisplaySets = displaySetService.getDisplaySetsForReferences(
|
||||
instance.ReferencedSeriesSequence
|
||||
const referencedDisplaySets = displaySetService.getDisplaySetsForSeries(
|
||||
displaySet.referencedSeriesInstanceUID
|
||||
);
|
||||
|
||||
if (referencedDisplaySets?.length > 1) {
|
||||
console.warn(
|
||||
'Segmentation does not currently handle references to multiple series, defaulting to first series'
|
||||
);
|
||||
}
|
||||
|
||||
const referencedDisplaySet = referencedDisplaySets[0];
|
||||
|
||||
if (!referencedDisplaySet) {
|
||||
@@ -105,16 +89,12 @@ function _getDisplaySetsFromSeries(
|
||||
const addedDisplaySet = displaySetsAdded[0];
|
||||
if (addedDisplaySet.SeriesInstanceUID === displaySet.referencedSeriesInstanceUID) {
|
||||
displaySet.referencedDisplaySetInstanceUID = addedDisplaySet.displaySetInstanceUID;
|
||||
displaySet.isReconstructable = addedDisplaySet.isReconstructable;
|
||||
displaySet.FrameOfReferenceUID = addedDisplaySet.FrameOfReferenceUID;
|
||||
unsubscribe();
|
||||
}
|
||||
}
|
||||
);
|
||||
} else {
|
||||
displaySet.referencedDisplaySetInstanceUID = referencedDisplaySet.displaySetInstanceUID;
|
||||
displaySet.isReconstructable = referencedDisplaySet.isReconstructable;
|
||||
displaySet.FrameOfReferenceUID = referencedDisplaySet.FrameOfReferenceUID;
|
||||
}
|
||||
|
||||
displaySet.load = async ({ headers }) =>
|
||||
@@ -252,8 +232,7 @@ function _segmentationExists(segDisplaySet) {
|
||||
return cstSegmentation.state.getSegmentation(segDisplaySet.displaySetInstanceUID);
|
||||
}
|
||||
|
||||
function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams) {
|
||||
const { servicesManager, extensionManager } = params;
|
||||
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
|
||||
const getDisplaySetsFromSeries = instances => {
|
||||
return _getDisplaySetsFromSeries(instances, servicesManager, extensionManager);
|
||||
};
|
||||
|
||||
@@ -1,35 +1,6 @@
|
||||
import { utilities as cstUtils } from '@cornerstonejs/tools';
|
||||
import i18n from '@ohif/i18n';
|
||||
import { useUIStateStore } from '@ohif/extension-default';
|
||||
|
||||
import LogicalContourOperationsOptions from './components/LogicalContourOperationsOptions';
|
||||
import SimplifyContourOptions from './components/SimplifyContourOptions';
|
||||
import SmoothContoursOptions from './components/SmoothContoursOptions';
|
||||
|
||||
export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
const { segmentationService, toolbarService, toolGroupService } = servicesManager.services;
|
||||
return [
|
||||
{
|
||||
name: 'cornerstone.SimplifyContourOptions',
|
||||
defaultComponent: SimplifyContourOptions,
|
||||
},
|
||||
{
|
||||
name: 'cornerstone.LogicalContourOperationsOptions',
|
||||
defaultComponent: LogicalContourOperationsOptions,
|
||||
},
|
||||
{
|
||||
name: 'cornerstone.SmoothContoursOptions',
|
||||
defaultComponent: SmoothContoursOptions,
|
||||
},
|
||||
{
|
||||
name: 'cornerstone.isActiveSegmentationUtility',
|
||||
evaluate: ({ button }) => {
|
||||
const { uiState } = useUIStateStore.getState();
|
||||
return {
|
||||
isActive: uiState[`activeSegmentationUtility`] === button.id,
|
||||
};
|
||||
},
|
||||
},
|
||||
{
|
||||
name: 'evaluate.cornerstone.hasSegmentation',
|
||||
evaluate: ({ viewportId }) => {
|
||||
@@ -39,30 +10,6 @@ export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
};
|
||||
},
|
||||
},
|
||||
{
|
||||
name: 'evaluate.cornerstone.hasSegmentationOfType',
|
||||
evaluate: ({ viewportId, segmentationRepresentationType }) => {
|
||||
const segmentations = segmentationService.getSegmentationRepresentations(viewportId);
|
||||
|
||||
if (!segmentations?.length) {
|
||||
return {
|
||||
disabled: true,
|
||||
disabledText: i18n.t('SegmentationPanel:No segmentations available'),
|
||||
};
|
||||
}
|
||||
|
||||
if (
|
||||
!segmentations.some(segmentation =>
|
||||
Boolean(segmentation.type === segmentationRepresentationType)
|
||||
)
|
||||
) {
|
||||
return {
|
||||
disabled: true,
|
||||
disabledText: `No ${segmentationRepresentationType} segmentations available`,
|
||||
};
|
||||
}
|
||||
},
|
||||
},
|
||||
{
|
||||
name: 'evaluate.cornerstone.segmentation',
|
||||
evaluate: ({ viewportId, button, toolNames, disabledText }) => {
|
||||
@@ -74,7 +21,7 @@ export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
if (!segmentations?.length) {
|
||||
return {
|
||||
disabled: true,
|
||||
disabledText: disabledText ?? i18n.t('SegmentationPanel:No segmentations available'),
|
||||
disabledText: disabledText ?? 'No segmentations available',
|
||||
};
|
||||
}
|
||||
|
||||
@@ -82,7 +29,7 @@ export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
if (!Object.keys(activeSegmentation.segments).length) {
|
||||
return {
|
||||
disabled: true,
|
||||
disabledText: i18n.t('SegmentationPanel:Add segment to enable this tool'),
|
||||
disabledText: 'Add segment to enable this tool',
|
||||
};
|
||||
}
|
||||
|
||||
@@ -91,7 +38,7 @@ export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
if (!toolGroup) {
|
||||
return {
|
||||
disabled: true,
|
||||
disabledText: disabledText ?? i18n.t('SegmentationPanel:Not available on the current viewport'),
|
||||
disabledText: disabledText ?? 'Not available on the current viewport',
|
||||
};
|
||||
}
|
||||
|
||||
@@ -107,7 +54,7 @@ export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
if (!toolGroup.hasTool(toolName) && !toolNames) {
|
||||
return {
|
||||
disabled: true,
|
||||
disabledText: disabledText ?? i18n.t('SegmentationPanel:Not available on the current viewport'),
|
||||
disabledText: disabledText ?? 'Not available on the current viewport',
|
||||
};
|
||||
}
|
||||
|
||||
@@ -121,23 +68,5 @@ export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
};
|
||||
},
|
||||
},
|
||||
{
|
||||
name: 'evaluate.cornerstone.segmentation.synchronizeDrawingRadius',
|
||||
evaluate: ({ button, radiusOptionId }) => {
|
||||
const toolGroupIds = toolGroupService.getToolGroupIds();
|
||||
if (!toolGroupIds?.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
for (const toolGroupId of toolGroupIds) {
|
||||
const brushSize = cstUtils.segmentation.getBrushSizeForToolGroup(toolGroupId);
|
||||
|
||||
if (brushSize) {
|
||||
const option = toolbarService.getOptionById(button, radiusOptionId);
|
||||
option.value = brushSize;
|
||||
}
|
||||
}
|
||||
},
|
||||
},
|
||||
];
|
||||
}
|
||||
@@ -1,14 +1,7 @@
|
||||
function createSEGToolGroupAndAddTools({
|
||||
commandsManager,
|
||||
toolGroupService,
|
||||
customizationService,
|
||||
toolGroupId,
|
||||
}) {
|
||||
function createSEGToolGroupAndAddTools(ToolGroupService, customizationService, toolGroupId) {
|
||||
const tools = customizationService.getCustomization('cornerstone.overlayViewportTools');
|
||||
|
||||
const updatedTools = commandsManager.run('initializeSegmentLabelTool', { tools });
|
||||
|
||||
return toolGroupService.createToolGroupAndAddTools(toolGroupId, updatedTools);
|
||||
return ToolGroupService.createToolGroupAndAddTools(toolGroupId, tools);
|
||||
}
|
||||
|
||||
export default createSEGToolGroupAndAddTools;
|
||||
@@ -1,4 +1,8 @@
|
||||
import { utils, Types } from '@ohif/extension-cornerstone';
|
||||
const RESPONSE = {
|
||||
NO_NEVER: -1,
|
||||
CANCEL: 0,
|
||||
HYDRATE_SEG: 5,
|
||||
};
|
||||
|
||||
function promptHydrateSEG({
|
||||
servicesManager,
|
||||
@@ -6,20 +10,75 @@ function promptHydrateSEG({
|
||||
viewportId,
|
||||
preHydrateCallbacks,
|
||||
hydrateCallback,
|
||||
}: {
|
||||
servicesManager: AppTypes.ServicesManager;
|
||||
segDisplaySet: AppTypes.DisplaySet;
|
||||
viewportId: string;
|
||||
preHydrateCallbacks?: Types.HydrationCallback[];
|
||||
hydrateCallback: Types.HydrationCallback;
|
||||
}) {
|
||||
return utils.promptHydrationDialog({
|
||||
servicesManager,
|
||||
viewportId,
|
||||
displaySet: segDisplaySet as AppTypes.DisplaySet,
|
||||
preHydrateCallbacks,
|
||||
hydrateCallback,
|
||||
type: 'SEG',
|
||||
}: withAppTypes) {
|
||||
const { uiViewportDialogService, customizationService } = servicesManager.services;
|
||||
const extensionManager = servicesManager._extensionManager;
|
||||
const appConfig = extensionManager._appConfig;
|
||||
|
||||
return new Promise(async function (resolve, reject) {
|
||||
const promptResult = appConfig?.disableConfirmationPrompts
|
||||
? RESPONSE.HYDRATE_SEG
|
||||
: await _askHydrate(uiViewportDialogService, customizationService, viewportId);
|
||||
|
||||
if (promptResult === RESPONSE.HYDRATE_SEG) {
|
||||
preHydrateCallbacks?.forEach(callback => {
|
||||
callback();
|
||||
});
|
||||
|
||||
window.setTimeout(async () => {
|
||||
const isHydrated = await hydrateCallback({
|
||||
segDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
|
||||
resolve(isHydrated);
|
||||
}, 0);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
function _askHydrate(
|
||||
uiViewportDialogService: AppTypes.UIViewportDialogService,
|
||||
customizationService: AppTypes.CustomizationService,
|
||||
viewportId
|
||||
) {
|
||||
return new Promise(function (resolve, reject) {
|
||||
const message = customizationService.getCustomization('viewportNotification.hydrateSEGMessage');
|
||||
const actions = [
|
||||
{
|
||||
id: 'no-hydrate',
|
||||
type: 'secondary',
|
||||
text: 'No',
|
||||
value: RESPONSE.CANCEL,
|
||||
},
|
||||
{
|
||||
id: 'yes-hydrate',
|
||||
type: 'primary',
|
||||
text: 'Yes',
|
||||
value: RESPONSE.HYDRATE_SEG,
|
||||
},
|
||||
];
|
||||
const onSubmit = result => {
|
||||
uiViewportDialogService.hide();
|
||||
resolve(result);
|
||||
};
|
||||
|
||||
uiViewportDialogService.show({
|
||||
viewportId,
|
||||
type: 'info',
|
||||
message,
|
||||
actions,
|
||||
onSubmit,
|
||||
onOutsideClick: () => {
|
||||
uiViewportDialogService.hide();
|
||||
resolve(RESPONSE.CANCEL);
|
||||
},
|
||||
onKeyPress: event => {
|
||||
if (event.key === 'Enter') {
|
||||
onSubmit(RESPONSE.HYDRATE_SEG);
|
||||
}
|
||||
},
|
||||
});
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
@@ -1,24 +1,36 @@
|
||||
import React, { useCallback, useEffect, useRef, useState } from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { ViewportActionArrows } from '@ohif/ui-next';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import createSEGToolGroupAndAddTools from '../utils/initSEGToolGroup';
|
||||
import promptHydrateSEG from '../utils/promptHydrateSEG';
|
||||
import { usePositionPresentationStore, OHIFCornerstoneViewport } from '@ohif/extension-cornerstone';
|
||||
import _getStatusComponent from './_getStatusComponent';
|
||||
import { usePositionPresentationStore } from '@ohif/extension-cornerstone';
|
||||
import { SegmentationRepresentations } from '@cornerstonejs/tools/enums';
|
||||
import { useSystem } from '@ohif/core/src/contextProviders/SystemProvider';
|
||||
import { utils } from '@ohif/extension-cornerstone';
|
||||
|
||||
const SEG_TOOLGROUP_BASE_NAME = 'SEGToolGroup';
|
||||
|
||||
function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
const { servicesManager, commandsManager } = useSystem();
|
||||
const { children, displaySets, viewportOptions } = props as {
|
||||
children: React.ReactNode;
|
||||
displaySets: AppTypes.DisplaySet[];
|
||||
viewportOptions: AppTypes.ViewportOptions;
|
||||
};
|
||||
const {
|
||||
children,
|
||||
displaySets,
|
||||
viewportOptions,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
commandsManager,
|
||||
} = props;
|
||||
|
||||
const { t } = useTranslation('SEGViewport');
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
|
||||
const { displaySetService, toolGroupService, segmentationService, customizationService } =
|
||||
servicesManager.services;
|
||||
const {
|
||||
displaySetService,
|
||||
toolGroupService,
|
||||
segmentationService,
|
||||
customizationService,
|
||||
viewportActionCornersService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const LoadingIndicatorTotalPercent = customizationService.getCustomization(
|
||||
'ui.loadingIndicatorTotalPercent'
|
||||
@@ -35,6 +47,7 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
const [viewportGrid, viewportGridService] = useViewportGrid();
|
||||
|
||||
// States
|
||||
const selectedSegmentObjectIndex: number = 0;
|
||||
const { setPositionPresentation } = usePositionPresentationStore();
|
||||
|
||||
// Hydration means that the SEG is opened and segments are loaded into the
|
||||
@@ -42,7 +55,9 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
// same frameOfReferenceUID as the referencedSeriesUID of the SEG. However,
|
||||
// loading basically means SEG loading over network and bit unpacking of the
|
||||
// SEG data.
|
||||
const [isHydrated, setIsHydrated] = useState(segDisplaySet.isHydrated);
|
||||
const [segIsLoading, setSegIsLoading] = useState(!segDisplaySet.isLoaded);
|
||||
const [element, setElement] = useState(null);
|
||||
const [processingProgress, setProcessingProgress] = useState({
|
||||
percentComplete: null,
|
||||
totalSegments: null,
|
||||
@@ -54,32 +69,6 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
const { viewports, activeViewportId } = viewportGrid;
|
||||
|
||||
const referencedDisplaySetInstanceUID = segDisplaySet.referencedDisplaySetInstanceUID;
|
||||
// If the referencedDisplaySetInstanceUID is not found, it means the SEG series is being
|
||||
// launched without its corresponding referenced display set (e.g., the SEG series is launched using
|
||||
// series launch /mode?StudyInstanceUIDs=&SeriesInstanceUID).
|
||||
// In such cases, we attempt to handle this scenario gracefully by
|
||||
// invoking a custom handler. Ideally, if a user tries to launch a series that isn't viewable,
|
||||
// (eg.: we can prompt them with an explanation and provide a link to the full study).
|
||||
|
||||
// Additional guard: If no customization handler is registered for missing
|
||||
// referenced display sets, skip SEG rendering to avoid a viewport crash.
|
||||
if (!referencedDisplaySetInstanceUID) {
|
||||
const missingReferenceDisplaySetHandler = customizationService.getCustomization(
|
||||
'missingReferenceDisplaySetHandler'
|
||||
);
|
||||
if (typeof missingReferenceDisplaySetHandler === 'function') {
|
||||
const { handled } = missingReferenceDisplaySetHandler();
|
||||
if (handled) {
|
||||
return;
|
||||
}
|
||||
} else {
|
||||
console.log(
|
||||
"No customization 'missingReferenceDisplaySetHandler' registered. Skipping SEG rendering."
|
||||
);
|
||||
return;
|
||||
}
|
||||
}
|
||||
|
||||
const referencedDisplaySet = displaySetService.getDisplaySetByUID(
|
||||
referencedDisplaySetInstanceUID
|
||||
);
|
||||
@@ -93,10 +82,36 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
displaySet: referencedDisplaySet,
|
||||
metadata: referencedDisplaySetMetadata,
|
||||
};
|
||||
/**
|
||||
* OnElementEnabled callback which is called after the cornerstoneExtension
|
||||
* has enabled the element. Note: we delegate all the image rendering to
|
||||
* cornerstoneExtension, so we don't need to do anything here regarding
|
||||
* the image rendering, element enabling etc.
|
||||
*/
|
||||
const onElementEnabled = evt => {
|
||||
setElement(evt.detail.element);
|
||||
};
|
||||
|
||||
const onElementDisabled = () => {
|
||||
setElement(null);
|
||||
};
|
||||
|
||||
const storePresentationState = useCallback(() => {
|
||||
viewportGrid?.viewports.forEach(({ viewportId }) => {
|
||||
commandsManager.runCommand('storePresentation', {
|
||||
viewportId,
|
||||
});
|
||||
});
|
||||
}, [viewportGrid]);
|
||||
|
||||
const getCornerstoneViewport = useCallback(() => {
|
||||
const { component: Component } = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.viewportModule.cornerstone'
|
||||
);
|
||||
|
||||
// Todo: jump to the center of the first segment
|
||||
return (
|
||||
<OHIFCornerstoneViewport
|
||||
<Component
|
||||
{...props}
|
||||
displaySets={[segDisplaySet]}
|
||||
viewportOptions={{
|
||||
@@ -108,35 +123,66 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
}}
|
||||
onElementEnabled={evt => {
|
||||
props.onElementEnabled?.(evt);
|
||||
onElementEnabled(evt);
|
||||
}}
|
||||
/>
|
||||
onElementDisabled={onElementDisabled}
|
||||
></Component>
|
||||
);
|
||||
}, [viewportId, segDisplaySet, toolGroupId, props, viewportOptions]);
|
||||
}, [viewportId, segDisplaySet, toolGroupId]);
|
||||
|
||||
const onSegmentChange = useCallback(
|
||||
direction => {
|
||||
utils.handleSegmentChange({
|
||||
direction,
|
||||
segDisplaySet: segDisplaySet,
|
||||
viewportId,
|
||||
selectedSegmentObjectIndex,
|
||||
segmentationService,
|
||||
});
|
||||
},
|
||||
[selectedSegmentObjectIndex]
|
||||
);
|
||||
|
||||
const hydrateSEG = useCallback(() => {
|
||||
// update the previously stored segmentationPresentation with the new viewportId
|
||||
// presentation so that when we put the referencedDisplaySet back in the viewport
|
||||
// it will have the correct segmentation representation hydrated
|
||||
commandsManager.runCommand('updateStoredSegmentationPresentation', {
|
||||
displaySet: segDisplaySet,
|
||||
type: SegmentationRepresentations.Labelmap,
|
||||
});
|
||||
|
||||
// update the previously stored positionPresentation with the new viewportId
|
||||
// presentation so that when we put the referencedDisplaySet back in the viewport
|
||||
// it will be in the correct position zoom and pan
|
||||
commandsManager.runCommand('updateStoredPositionPresentation', {
|
||||
viewportId,
|
||||
displaySetInstanceUID: referencedDisplaySet.displaySetInstanceUID,
|
||||
});
|
||||
|
||||
commandsManager.runCommand('loadSegmentationDisplaySetsForViewport', {
|
||||
viewportId,
|
||||
displaySetInstanceUIDs: [referencedDisplaySet.displaySetInstanceUID],
|
||||
});
|
||||
}, [commandsManager, viewportId, referencedDisplaySet, segDisplaySet]);
|
||||
|
||||
useEffect(() => {
|
||||
if (segIsLoading) {
|
||||
return;
|
||||
}
|
||||
|
||||
// if not active viewport, return
|
||||
if (viewportId !== activeViewportId) {
|
||||
return;
|
||||
}
|
||||
|
||||
promptHydrateSEG({
|
||||
servicesManager,
|
||||
viewportId,
|
||||
segDisplaySet,
|
||||
hydrateCallback: async () => {
|
||||
await commandsManager.runCommand('hydrateSecondaryDisplaySet', {
|
||||
displaySet: segDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
|
||||
return true;
|
||||
},
|
||||
preHydrateCallbacks: [storePresentationState],
|
||||
hydrateCallback: hydrateSEG,
|
||||
}).then(isHydrated => {
|
||||
if (isHydrated) {
|
||||
setIsHydrated(true);
|
||||
}
|
||||
});
|
||||
}, [servicesManager, viewportId, segDisplaySet, segIsLoading, commandsManager, activeViewportId]);
|
||||
}, [servicesManager, viewportId, segDisplaySet, segIsLoading, hydrateSEG]);
|
||||
|
||||
useEffect(() => {
|
||||
// on new seg display set, remove all segmentations from all viewports
|
||||
@@ -145,7 +191,7 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
const { unsubscribe } = segmentationService.subscribe(
|
||||
segmentationService.EVENTS.SEGMENTATION_LOADING_COMPLETE,
|
||||
evt => {
|
||||
if (evt.segDisplaySet?.displaySetInstanceUID === segDisplaySet?.displaySetInstanceUID) {
|
||||
if (evt.segDisplaySet.displaySetInstanceUID === segDisplaySet.displaySetInstanceUID) {
|
||||
setSegIsLoading(false);
|
||||
}
|
||||
|
||||
@@ -225,12 +271,7 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
|
||||
// This creates a custom tool group which has the lifetime of this view
|
||||
// only, and does NOT interfere with currently displayed segmentations.
|
||||
toolGroup = createSEGToolGroupAndAddTools({
|
||||
commandsManager,
|
||||
toolGroupService,
|
||||
customizationService,
|
||||
toolGroupId,
|
||||
});
|
||||
toolGroup = createSEGToolGroupAndAddTools(toolGroupService, customizationService, toolGroupId);
|
||||
|
||||
return () => {
|
||||
// remove the segmentation representations if seg displayset changed
|
||||
@@ -242,6 +283,54 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
};
|
||||
}, []);
|
||||
|
||||
const onStatusClick = useCallback(async () => {
|
||||
// Before hydrating a SEG and make it added to all viewports in the grid
|
||||
// that share the same frameOfReferenceUID, we need to store the viewport grid
|
||||
// presentation state, so that we can restore it after hydrating the SEG. This is
|
||||
// required if the user has changed the viewport (other viewport than SEG viewport)
|
||||
// presentation state (w/l and invert) and then opens the SEG. If we don't store
|
||||
// the presentation state, the viewport will be reset to the default presentation
|
||||
storePresentationState();
|
||||
hydrateSEG();
|
||||
}, [storePresentationState, hydrateSEG]);
|
||||
|
||||
useEffect(() => {
|
||||
viewportActionCornersService.addComponents([
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportStatusComponent',
|
||||
component: _getStatusComponent({
|
||||
isHydrated,
|
||||
onStatusClick,
|
||||
}),
|
||||
indexPriority: -100,
|
||||
location: viewportActionCornersService.LOCATIONS.topLeft,
|
||||
},
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportActionArrowsComponent',
|
||||
component: (
|
||||
<ViewportActionArrows
|
||||
key="actionArrows"
|
||||
onArrowsClick={onSegmentChange}
|
||||
className={
|
||||
viewportId === activeViewportId ? 'visible' : 'invisible group-hover/pane:visible'
|
||||
}
|
||||
></ViewportActionArrows>
|
||||
),
|
||||
indexPriority: 0,
|
||||
location: viewportActionCornersService.LOCATIONS.topRight,
|
||||
},
|
||||
]);
|
||||
}, [
|
||||
activeViewportId,
|
||||
isHydrated,
|
||||
onSegmentChange,
|
||||
onStatusClick,
|
||||
viewportActionCornersService,
|
||||
viewportId,
|
||||
]);
|
||||
|
||||
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
let childrenWithProps = null;
|
||||
|
||||
|
||||
@@ -0,0 +1,59 @@
|
||||
import React from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { ViewportActionButton } from '@ohif/ui-next';
|
||||
import { Icons, Tooltip, TooltipTrigger, TooltipContent } from '@ohif/ui-next';
|
||||
|
||||
export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
let ToolTipMessage = null;
|
||||
let StatusIcon = null;
|
||||
|
||||
switch (isHydrated) {
|
||||
case true:
|
||||
StatusIcon = () => <Icons.ByName name="status-alert" />;
|
||||
ToolTipMessage = () => <div>This Segmentation is loaded in the segmentation panel</div>;
|
||||
break;
|
||||
case false:
|
||||
StatusIcon = () => (
|
||||
<Icons.ByName
|
||||
className="text-muted-foreground h-4 w-4"
|
||||
name="status-untracked"
|
||||
/>
|
||||
);
|
||||
ToolTipMessage = () => <div>Click LOAD to load segmentation.</div>;
|
||||
}
|
||||
|
||||
const StatusArea = () => {
|
||||
const { t } = useTranslation('Common');
|
||||
const loadStr = t('LOAD');
|
||||
|
||||
return (
|
||||
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
|
||||
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
|
||||
<StatusIcon />
|
||||
<span className="ml-1">SEG</span>
|
||||
</div>
|
||||
{!isHydrated && (
|
||||
<ViewportActionButton onInteraction={onStatusClick}>{loadStr}</ViewportActionButton>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
{ToolTipMessage && (
|
||||
<Tooltip>
|
||||
<TooltipTrigger asChild>
|
||||
<span>
|
||||
<StatusArea />
|
||||
</span>
|
||||
</TooltipTrigger>
|
||||
<TooltipContent side="bottom">
|
||||
<ToolTipMessage />
|
||||
</TooltipContent>
|
||||
</Tooltip>
|
||||
)}
|
||||
{!ToolTipMessage && <StatusArea />}
|
||||
</>
|
||||
);
|
||||
}
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-sr",
|
||||
"version": "3.13.0-beta.63",
|
||||
"version": "3.10.2",
|
||||
"description": "OHIF extension for an SR Cornerstone Viewport",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -34,21 +34,21 @@
|
||||
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.13.0-beta.63",
|
||||
"@ohif/extension-cornerstone": "3.13.0-beta.63",
|
||||
"@ohif/extension-measurement-tracking": "3.13.0-beta.63",
|
||||
"@ohif/ui": "3.13.0-beta.63",
|
||||
"dcmjs": "0.49.4",
|
||||
"dicom-parser": "1.8.21",
|
||||
"hammerjs": "2.0.8",
|
||||
"prop-types": "15.8.1",
|
||||
"react": "18.3.1"
|
||||
"@ohif/core": "3.10.2",
|
||||
"@ohif/extension-cornerstone": "3.10.2",
|
||||
"@ohif/extension-measurement-tracking": "3.10.2",
|
||||
"@ohif/ui": "3.10.2",
|
||||
"dcmjs": "*",
|
||||
"dicom-parser": "^1.8.9",
|
||||
"hammerjs": "^2.0.8",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^18.3.1"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "7.28.2",
|
||||
"@cornerstonejs/adapters": "4.21.7",
|
||||
"@cornerstonejs/core": "4.21.7",
|
||||
"@cornerstonejs/tools": "4.21.7",
|
||||
"classnames": "2.5.1"
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^3.11.6",
|
||||
"@cornerstonejs/core": "^3.11.6",
|
||||
"@cornerstonejs/tools": "^3.11.6",
|
||||
"classnames": "^2.3.2"
|
||||
}
|
||||
}
|
||||
@@ -1,6 +1,7 @@
|
||||
import { metaData } from '@cornerstonejs/core';
|
||||
import { metaData, utilities } from '@cornerstonejs/core';
|
||||
|
||||
import OHIF from '@ohif/core';
|
||||
import OHIF, { DicomMetadataStore } from '@ohif/core';
|
||||
import dcmjs from 'dcmjs';
|
||||
import { adaptersSR } from '@cornerstonejs/adapters';
|
||||
|
||||
import getFilteredCornerstoneToolState from './utils/getFilteredCornerstoneToolState';
|
||||
@@ -31,7 +32,12 @@ const _generateReport = (measurementData, additionalFindingTypes, options: Optio
|
||||
additionalFindingTypes
|
||||
);
|
||||
|
||||
const report = MeasurementReport.generateReport(filteredToolState, metaData, options);
|
||||
const report = MeasurementReport.generateReport(
|
||||
filteredToolState,
|
||||
metaData,
|
||||
utilities.worldToImageCoords,
|
||||
options
|
||||
);
|
||||
|
||||
const { dataset } = report;
|
||||
|
||||
@@ -41,12 +47,14 @@ const _generateReport = (measurementData, additionalFindingTypes, options: Optio
|
||||
dataset.SpecificCharacterSet = 'ISO_IR 192';
|
||||
}
|
||||
|
||||
dataset.InstanceNumber = options.InstanceNumber ?? 1;
|
||||
|
||||
return dataset;
|
||||
};
|
||||
|
||||
const commandsModule = (props: withAppTypes) => {
|
||||
const { servicesManager, extensionManager, commandsManager } = props;
|
||||
const { customizationService } = servicesManager.services;
|
||||
const { customizationService, viewportGridService, displaySetService } = servicesManager.services;
|
||||
|
||||
const actions = {
|
||||
changeColorMeasurement: ({ uid }) => {
|
||||
@@ -72,8 +80,25 @@ const commandsModule = (props: withAppTypes) => {
|
||||
/**
|
||||
*
|
||||
* @param measurementData An array of measurements from the measurements service
|
||||
* @param additionalFindingTypes toolTypes that should be stored with labels as Findings
|
||||
* @param options Naturalized DICOM JSON headers to merge into the displaySet.
|
||||
* as opposed to Finding Sites.
|
||||
* that you wish to serialize.
|
||||
* @param dataSource The data source name ('download', 'copyToClipboard', or a named data source).
|
||||
*/
|
||||
downloadReport: ({ measurementData, additionalFindingTypes, options = {} }) => {
|
||||
const srDataset = _generateReport(measurementData, additionalFindingTypes, options);
|
||||
const reportBlob = dcmjs.data.datasetToBlob(srDataset);
|
||||
|
||||
//Create a URL for the binary.
|
||||
const objectUrl = URL.createObjectURL(reportBlob);
|
||||
window.location.assign(objectUrl);
|
||||
},
|
||||
|
||||
/**
|
||||
*
|
||||
* @param measurementData An array of measurements from the measurements service
|
||||
* that you wish to serialize.
|
||||
* @param dataSource The dataSource that you wish to use to persist the data.
|
||||
* @param additionalFindingTypes toolTypes that should be stored with labels as Findings
|
||||
* @param options Naturalized DICOM JSON headers to merge into the displaySet.
|
||||
* @return The naturalized report
|
||||
@@ -84,44 +109,44 @@ const commandsModule = (props: withAppTypes) => {
|
||||
additionalFindingTypes,
|
||||
options = {},
|
||||
}) => {
|
||||
// Use the @cornerstonejs adapter for converting to/from DICOM
|
||||
// But it is good enough for now whilst we only have cornerstone as a datasource.
|
||||
log.info('[DICOMSR] storeMeasurements');
|
||||
|
||||
const storeFn = commandsManager.runCommand('createStoreFunction', {
|
||||
dataSource,
|
||||
defaultFileName: 'dicom-sr.dcm',
|
||||
});
|
||||
|
||||
if (!storeFn) {
|
||||
log.error('[DICOMSR] No valid store for dataSource:', dataSource);
|
||||
if (!dataSource || !dataSource.store || !dataSource.store.dicom) {
|
||||
log.error('[DICOMSR] datasource has no dataSource.store.dicom endpoint!');
|
||||
return Promise.reject({});
|
||||
}
|
||||
|
||||
try {
|
||||
const naturalizedReport = _generateReport(
|
||||
measurementData,
|
||||
additionalFindingTypes,
|
||||
options
|
||||
);
|
||||
const naturalizedReport = _generateReport(measurementData, additionalFindingTypes, options);
|
||||
|
||||
const { ContentSequence } = naturalizedReport;
|
||||
const { StudyInstanceUID, ContentSequence } = naturalizedReport;
|
||||
// The content sequence has 5 or more elements, of which
|
||||
// the `[4]` element contains the annotation data, so this is
|
||||
// checking that there is some annotation data present.
|
||||
if (!ContentSequence?.[4]?.ContentSequence?.length) {
|
||||
if (!ContentSequence?.[4].ContentSequence?.length) {
|
||||
console.log('naturalizedReport missing imaging content', naturalizedReport);
|
||||
throw new Error('Invalid report, no content');
|
||||
}
|
||||
if (!naturalizedReport.SOPClassUID) {
|
||||
throw new Error('No sop class uid');
|
||||
}
|
||||
|
||||
const onBeforeDicomStore = customizationService.getCustomization('onBeforeDicomStore');
|
||||
|
||||
let dicomDict;
|
||||
if (typeof onBeforeDicomStore === 'function') {
|
||||
dicomDict = onBeforeDicomStore({ dicomDict, measurementData, naturalizedReport });
|
||||
}
|
||||
|
||||
await storeFn(naturalizedReport, { measurementData, dicomDict });
|
||||
await dataSource.store.dicom(naturalizedReport, null, dicomDict);
|
||||
|
||||
if (StudyInstanceUID) {
|
||||
dataSource.deleteStudyMetadataPromise(StudyInstanceUID);
|
||||
}
|
||||
|
||||
// The "Mode" route listens for DicomMetadataStore changes
|
||||
// When a new instance is added, it listens and
|
||||
// automatically calls makeDisplaySets
|
||||
DicomMetadataStore.addInstances([naturalizedReport], true);
|
||||
|
||||
return naturalizedReport;
|
||||
} catch (error) {
|
||||
@@ -135,17 +160,36 @@ const commandsModule = (props: withAppTypes) => {
|
||||
* Loads measurements by hydrating and loading the SR for the given display set instance UID
|
||||
* and displays it in the active viewport.
|
||||
*/
|
||||
hydrateStructuredReport: ({ displaySetInstanceUID }) => {
|
||||
return hydrateStructuredReport(
|
||||
loadSRMeasurements: ({ displaySetInstanceUID }) => {
|
||||
const { SeriesInstanceUIDs } = hydrateStructuredReport(
|
||||
{ servicesManager, extensionManager, commandsManager },
|
||||
displaySetInstanceUID
|
||||
);
|
||||
|
||||
const displaySets = displaySetService.getDisplaySetsForSeries(SeriesInstanceUIDs[0]);
|
||||
if (displaySets.length) {
|
||||
commandsManager.run('setDisplaySetsForViewports', {
|
||||
viewportsToUpdate: [
|
||||
{
|
||||
viewportId: viewportGridService.getActiveViewportId(),
|
||||
displaySetInstanceUIDs: [displaySets[0].displaySetInstanceUID],
|
||||
},
|
||||
],
|
||||
});
|
||||
}
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
storeMeasurements: actions.storeMeasurements,
|
||||
hydrateStructuredReport: actions.hydrateStructuredReport,
|
||||
downloadReport: {
|
||||
commandFn: actions.downloadReport,
|
||||
},
|
||||
storeMeasurements: {
|
||||
commandFn: actions.storeMeasurements,
|
||||
},
|
||||
loadSRMeasurements: {
|
||||
commandFn: actions.loadSRMeasurements,
|
||||
},
|
||||
};
|
||||
|
||||
return {
|
||||
|
||||
+243
-19
@@ -1,24 +1,25 @@
|
||||
import PropTypes from 'prop-types';
|
||||
import React, { useCallback, useEffect, useState } from 'react';
|
||||
import React, { useCallback, useContext, useEffect, useState } from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { ExtensionManager, useToolbar } from '@ohif/core';
|
||||
|
||||
import { setTrackingUniqueIdentifiersForElement } from '../tools/modules/dicomSRModule';
|
||||
|
||||
import { ViewportActionArrows } from '@ohif/ui-next';
|
||||
import createReferencedImageDisplaySet from '../utils/createReferencedImageDisplaySet';
|
||||
import { usePositionPresentationStore, OHIFCornerstoneViewport } from '@ohif/extension-cornerstone';
|
||||
import { usePositionPresentationStore } from '@ohif/extension-cornerstone';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import { useSystem } from '@ohif/core/src/contextProviders/SystemProvider';
|
||||
import { Icons, Tooltip, TooltipTrigger, TooltipContent } from '@ohif/ui-next';
|
||||
|
||||
const MEASUREMENT_TRACKING_EXTENSION_ID = '@ohif/extension-measurement-tracking';
|
||||
|
||||
const SR_TOOLGROUP_BASE_NAME = 'SRToolGroup';
|
||||
|
||||
function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
const { servicesManager } = useSystem();
|
||||
const { children, dataSource, displaySets, viewportOptions } = props as {
|
||||
children: React.ReactNode;
|
||||
dataSource: unknown;
|
||||
displaySets: AppTypes.DisplaySet[];
|
||||
viewportOptions: AppTypes.ViewportOptions;
|
||||
};
|
||||
function OHIFCornerstoneSRMeasurementViewport(props: withAppTypes) {
|
||||
const { children, dataSource, displaySets, viewportOptions, servicesManager, extensionManager } =
|
||||
props;
|
||||
|
||||
const { displaySetService } = servicesManager.services;
|
||||
const { displaySetService, viewportActionCornersService } = servicesManager.services;
|
||||
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
|
||||
@@ -33,11 +34,40 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
|
||||
const [viewportGrid, viewportGridService] = useViewportGrid();
|
||||
const [measurementSelected, setMeasurementSelected] = useState(0);
|
||||
const [measurementCount, setMeasurementCount] = useState(1);
|
||||
const [activeImageDisplaySetData, setActiveImageDisplaySetData] = useState(null);
|
||||
const [referencedDisplaySetMetadata, setReferencedDisplaySetMetadata] = useState(null);
|
||||
const [element, setElement] = useState(null);
|
||||
const { viewports, activeViewportId } = viewportGrid;
|
||||
|
||||
const { t } = useTranslation('Common');
|
||||
|
||||
// Optional hook into tracking extension, if present.
|
||||
let trackedMeasurements;
|
||||
|
||||
const hasMeasurementTrackingExtension = extensionManager.registeredExtensionIds.includes(
|
||||
MEASUREMENT_TRACKING_EXTENSION_ID
|
||||
);
|
||||
|
||||
if (hasMeasurementTrackingExtension) {
|
||||
const contextModule = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-measurement-tracking.contextModule.TrackedMeasurementsContext'
|
||||
);
|
||||
|
||||
const tracked = useContext(contextModule.context);
|
||||
trackedMeasurements = tracked?.[0];
|
||||
}
|
||||
|
||||
/**
|
||||
* Todo: what is this, not sure what it does regarding the react aspect,
|
||||
* it is updating a local variable? which is not state.
|
||||
*/
|
||||
const [isLocked, setIsLocked] = useState(trackedMeasurements?.context?.trackedSeries?.length > 0);
|
||||
/**
|
||||
* Store the tracking identifiers per viewport in order to be able to
|
||||
* show the SR measurements on the referenced image on the correct viewport,
|
||||
* when multiple viewports are used.
|
||||
*/
|
||||
const setTrackingIdentifiers = useCallback(
|
||||
measurementSelected => {
|
||||
const { measurements } = srDisplaySet;
|
||||
@@ -63,12 +93,22 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
|
||||
const updateViewport = useCallback(
|
||||
newMeasurementSelected => {
|
||||
const { StudyInstanceUID, displaySetInstanceUID } = srDisplaySet;
|
||||
const { StudyInstanceUID, displaySetInstanceUID, sopClassUids } = srDisplaySet;
|
||||
|
||||
if (!StudyInstanceUID || !displaySetInstanceUID) {
|
||||
return;
|
||||
}
|
||||
|
||||
if (sopClassUids && sopClassUids.length > 1) {
|
||||
// Todo: what happens if there are multiple SOP Classes? Why we are
|
||||
// not throwing an error?
|
||||
console.warn('More than one SOPClassUID in the same series is not yet supported.');
|
||||
}
|
||||
|
||||
// if (!srDisplaySet.measurements || !srDisplaySet.measurements.length) {
|
||||
// return;
|
||||
// }
|
||||
|
||||
_getViewportReferencedDisplaySetData(
|
||||
srDisplaySet,
|
||||
newMeasurementSelected,
|
||||
@@ -86,7 +126,7 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
const { presentationIds } = viewportOptions;
|
||||
const measurement = srDisplaySet.measurements[newMeasurementSelected];
|
||||
setPositionPresentation(presentationIds.positionPresentationId, {
|
||||
viewReference: measurement.viewReference || {
|
||||
viewReference: {
|
||||
referencedImageId: measurement.imageId,
|
||||
},
|
||||
});
|
||||
@@ -100,6 +140,10 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
return null;
|
||||
}
|
||||
|
||||
const { component: Component } = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.viewportModule.cornerstone'
|
||||
);
|
||||
|
||||
const { measurements } = srDisplaySet;
|
||||
const measurement = measurements[measurementSelected];
|
||||
|
||||
@@ -108,7 +152,7 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
}
|
||||
|
||||
return (
|
||||
<OHIFCornerstoneViewport
|
||||
<Component
|
||||
{...props}
|
||||
// should be passed second since we don't want SR displaySet to
|
||||
// override the activeImageDisplaySetData
|
||||
@@ -132,10 +176,27 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
onElementEnabled(evt);
|
||||
}}
|
||||
isJumpToMeasurementDisabled={true}
|
||||
/>
|
||||
></Component>
|
||||
);
|
||||
}, [activeImageDisplaySetData, viewportId, measurementSelected]);
|
||||
|
||||
const onMeasurementChange = useCallback(
|
||||
direction => {
|
||||
let newMeasurementSelected = measurementSelected;
|
||||
|
||||
newMeasurementSelected += direction;
|
||||
if (newMeasurementSelected >= measurementCount) {
|
||||
newMeasurementSelected = 0;
|
||||
} else if (newMeasurementSelected < 0) {
|
||||
newMeasurementSelected = measurementCount - 1;
|
||||
}
|
||||
|
||||
setTrackingIdentifiers(newMeasurementSelected);
|
||||
updateViewport(newMeasurementSelected);
|
||||
},
|
||||
[measurementSelected, measurementCount, updateViewport, setTrackingIdentifiers]
|
||||
);
|
||||
|
||||
/**
|
||||
Cleanup the SR viewport when the viewport is destroyed
|
||||
*/
|
||||
@@ -170,6 +231,8 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
if (!srDisplaySet.isLoaded) {
|
||||
await srDisplaySet.load();
|
||||
}
|
||||
const numMeasurements = srDisplaySet.measurements.length;
|
||||
setMeasurementCount(numMeasurements);
|
||||
updateViewport(measurementSelected);
|
||||
};
|
||||
loadSR();
|
||||
@@ -192,6 +255,42 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
updateSR();
|
||||
}, [measurementSelected, element, setTrackingIdentifiers, srDisplaySet]);
|
||||
|
||||
useEffect(() => {
|
||||
setIsLocked(trackedMeasurements?.context?.trackedSeries?.length > 0);
|
||||
}, [trackedMeasurements]);
|
||||
|
||||
useEffect(() => {
|
||||
viewportActionCornersService.addComponents([
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportStatusComponent',
|
||||
component: _getStatusComponent({
|
||||
srDisplaySet,
|
||||
viewportId,
|
||||
isRehydratable: srDisplaySet.isRehydratable,
|
||||
isLocked,
|
||||
t,
|
||||
servicesManager,
|
||||
}),
|
||||
indexPriority: -100,
|
||||
location: viewportActionCornersService.LOCATIONS.topLeft,
|
||||
},
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportActionArrowsComponent',
|
||||
index: 0,
|
||||
component: (
|
||||
<ViewportActionArrows
|
||||
key="actionArrows"
|
||||
onArrowsClick={onMeasurementChange}
|
||||
></ViewportActionArrows>
|
||||
),
|
||||
indexPriority: 0,
|
||||
location: viewportActionCornersService.LOCATIONS.topRight,
|
||||
},
|
||||
]);
|
||||
}, [isLocked, onMeasurementChange, srDisplaySet, t, viewportActionCornersService, viewportId]);
|
||||
|
||||
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
let childrenWithProps = null;
|
||||
|
||||
@@ -228,6 +327,8 @@ OHIFCornerstoneSRMeasurementViewport.propTypes = {
|
||||
children: PropTypes.node,
|
||||
viewportLabel: PropTypes.string,
|
||||
viewportOptions: PropTypes.object,
|
||||
servicesManager: PropTypes.object.isRequired,
|
||||
extensionManager: PropTypes.instanceOf(ExtensionManager).isRequired,
|
||||
};
|
||||
|
||||
async function _getViewportReferencedDisplaySetData(
|
||||
@@ -252,9 +353,6 @@ async function _getViewportReferencedDisplaySetData(
|
||||
}
|
||||
|
||||
const referencedDisplaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
|
||||
if (!referencedDisplaySet?.images) {
|
||||
return { referencedDisplaySetMetadata: null, referencedDisplaySet: null };
|
||||
}
|
||||
|
||||
const image0 = referencedDisplaySet.images[0];
|
||||
const referencedDisplaySetMetadata = {
|
||||
@@ -274,4 +372,130 @@ async function _getViewportReferencedDisplaySetData(
|
||||
return { referencedDisplaySetMetadata, referencedDisplaySet };
|
||||
}
|
||||
|
||||
function _getStatusComponent({
|
||||
srDisplaySet,
|
||||
viewportId,
|
||||
isRehydratable,
|
||||
isLocked,
|
||||
t,
|
||||
servicesManager,
|
||||
}) {
|
||||
const loadStr = t('LOAD');
|
||||
|
||||
// 1 - Incompatible
|
||||
// 2 - Locked
|
||||
// 3 - Rehydratable / Open
|
||||
const state = isRehydratable && !isLocked ? 3 : isRehydratable && isLocked ? 2 : 1;
|
||||
let ToolTipMessage = null;
|
||||
let StatusIcon = null;
|
||||
|
||||
switch (state) {
|
||||
case 1:
|
||||
StatusIcon = () => (
|
||||
<Icons.ByName
|
||||
name="status-alert"
|
||||
className="h-4 w-4"
|
||||
/>
|
||||
);
|
||||
|
||||
ToolTipMessage = () => (
|
||||
<div>
|
||||
This structured report is not compatible
|
||||
<br />
|
||||
with this application.
|
||||
</div>
|
||||
);
|
||||
break;
|
||||
case 2:
|
||||
StatusIcon = () => (
|
||||
<Icons.ByName
|
||||
name="status-locked"
|
||||
className="h-4 w-4"
|
||||
/>
|
||||
);
|
||||
|
||||
ToolTipMessage = () => (
|
||||
<div>
|
||||
This structured report is currently read-only
|
||||
<br />
|
||||
because you are tracking measurements in
|
||||
<br />
|
||||
another viewport.
|
||||
</div>
|
||||
);
|
||||
break;
|
||||
case 3:
|
||||
StatusIcon = () => (
|
||||
<Icons.ByName
|
||||
className="text-muted-foreground h-4 w-4"
|
||||
name="status-untracked"
|
||||
/>
|
||||
);
|
||||
|
||||
ToolTipMessage = () => <div>{`Click ${loadStr} to restore measurements.`}</div>;
|
||||
}
|
||||
|
||||
const StatusArea = () => {
|
||||
const { toolbarButtons: loadSRMeasurementsButtons, onInteraction } = useToolbar({
|
||||
servicesManager,
|
||||
buttonSection: 'loadSRMeasurements',
|
||||
});
|
||||
|
||||
const commandOptions = {
|
||||
displaySetInstanceUID: srDisplaySet.displaySetInstanceUID,
|
||||
viewportId,
|
||||
};
|
||||
|
||||
return (
|
||||
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
|
||||
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
|
||||
<StatusIcon className="h-4 w-4" />
|
||||
<span className="ml-1">SR</span>
|
||||
</div>
|
||||
{state === 3 && (
|
||||
<>
|
||||
{loadSRMeasurementsButtons.map(toolDef => {
|
||||
if (!toolDef) {
|
||||
return null;
|
||||
}
|
||||
const { id, Component, componentProps } = toolDef;
|
||||
const tool = (
|
||||
<Component
|
||||
key={id}
|
||||
id={id}
|
||||
onInteraction={args => onInteraction({ ...args, ...commandOptions })}
|
||||
{...componentProps}
|
||||
/>
|
||||
);
|
||||
|
||||
return <div key={id}>{tool}</div>;
|
||||
})}
|
||||
</>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
{ToolTipMessage && (
|
||||
<Tooltip>
|
||||
<TooltipTrigger asChild>
|
||||
<span>
|
||||
<StatusArea />
|
||||
</span>
|
||||
</TooltipTrigger>
|
||||
<TooltipContent
|
||||
side="bottom"
|
||||
align="start"
|
||||
>
|
||||
<ToolTipMessage />
|
||||
</TooltipContent>
|
||||
</Tooltip>
|
||||
)}
|
||||
{!ToolTipMessage && <StatusArea />}
|
||||
</>
|
||||
);
|
||||
}
|
||||
|
||||
export default OHIFCornerstoneSRMeasurementViewport;
|
||||
@@ -9,7 +9,7 @@ function OHIFCornerstoneSRTextViewport(props: withAppTypes) {
|
||||
const instance = displaySet.instances[0];
|
||||
|
||||
return (
|
||||
<div className="text-foreground relative flex h-full w-full flex-col overflow-auto p-4">
|
||||
<div className="relative flex h-full w-full flex-col overflow-auto p-4 text-white">
|
||||
<div>
|
||||
{/* The root level is always a container */}
|
||||
<OHIFCornerstoneSRContainer container={instance} />
|
||||
|
||||
@@ -1,5 +1,4 @@
|
||||
import { utils, classes, DisplaySetService, Types as OhifTypes } from '@ohif/core';
|
||||
import i18n from '@ohif/i18n';
|
||||
import { utils, classes, DisplaySetService, Types } from '@ohif/core';
|
||||
import { Enums as CSExtensionEnums } from '@ohif/extension-cornerstone';
|
||||
import { adaptersSR } from '@cornerstonejs/adapters';
|
||||
|
||||
@@ -15,14 +14,10 @@ import { CodeNameCodeSequenceValues, CodingSchemeDesignators } from './enums';
|
||||
|
||||
const { sopClassDictionary } = utils;
|
||||
const { CORNERSTONE_3D_TOOLS_SOURCE_NAME, CORNERSTONE_3D_TOOLS_SOURCE_VERSION } = CSExtensionEnums;
|
||||
const { MetadataProvider: metadataProvider } = classes;
|
||||
const {
|
||||
TEXT_ANNOTATION_POSITION,
|
||||
COMMENT_CODE,
|
||||
CodeScheme: Cornerstone3DCodeScheme,
|
||||
} = adaptersSR.Cornerstone3D;
|
||||
const { ImageSet, MetadataProvider: metadataProvider } = classes;
|
||||
const { CodeScheme: Cornerstone3DCodeScheme } = adaptersSR.Cornerstone3D;
|
||||
|
||||
type InstanceMetadata = OhifTypes.InstanceMetadata;
|
||||
type InstanceMetadata = Types.InstanceMetadata;
|
||||
|
||||
/**
|
||||
* TODO
|
||||
@@ -35,7 +30,6 @@ const sopClassUids = [
|
||||
sopClassDictionary.BasicTextSR,
|
||||
sopClassDictionary.EnhancedSR,
|
||||
sopClassDictionary.ComprehensiveSR,
|
||||
sopClassDictionary.Comprehensive3DSR,
|
||||
];
|
||||
|
||||
const validateSameStudyUID = (uid: string, instances): void => {
|
||||
@@ -54,7 +48,7 @@ const validateSameStudyUID = (uid: string, instances): void => {
|
||||
* @param instances is a list of instances from THIS series that are not
|
||||
* in this DICOM SR Display Set already.
|
||||
*/
|
||||
function addInstances(instances: InstanceMetadata[], _displaySetService: DisplaySetService) {
|
||||
function addInstances(instances: InstanceMetadata[], displaySetService: DisplaySetService) {
|
||||
this.instances.push(...instances);
|
||||
utils.sortStudyInstances(this.instances);
|
||||
// The last instance is the newest one, so is the one most interesting.
|
||||
@@ -69,10 +63,9 @@ function addInstances(instances: InstanceMetadata[], _displaySetService: Display
|
||||
* DICOM SR SOP Class Handler
|
||||
* For all referenced images in the TID 1500/300 sections, add an image to the
|
||||
* display.
|
||||
* @param {InstanceMetadata[]} instances - A set of instances all from the same series
|
||||
* @param {AppTypes.ServicesManager} servicesManager - The services that can be used for creating
|
||||
* @param {AppTypes.ExtensionManager} extensionManager - The extension manager
|
||||
* @returns {Types.DisplaySet[]} The list of display sets created for the given instances object
|
||||
* @param instances is a set of instances all from the same series
|
||||
* @param servicesManager is the services that can be used for creating
|
||||
* @returns The list of display sets created for the given instances object
|
||||
*/
|
||||
function _getDisplaySetsFromSeries(
|
||||
instances,
|
||||
@@ -100,7 +93,6 @@ function _getDisplaySetsFromSeries(
|
||||
SeriesTime,
|
||||
ConceptNameCodeSequence,
|
||||
SOPClassUID,
|
||||
imageId: predecessorImageId,
|
||||
} = instance;
|
||||
validateSameStudyUID(instance.StudyInstanceUID, instances);
|
||||
|
||||
@@ -129,9 +121,7 @@ function _getDisplaySetsFromSeries(
|
||||
isImagingMeasurementReport,
|
||||
sopClassUids,
|
||||
instance,
|
||||
predecessorImageId,
|
||||
addInstances,
|
||||
label: SeriesDescription || `${i18n.t('Series')} ${SeriesNumber} - ${i18n.t('SR')}`,
|
||||
};
|
||||
|
||||
displaySet.load = () => _load(displaySet, servicesManager, extensionManager);
|
||||
@@ -146,7 +136,7 @@ function _getDisplaySetsFromSeries(
|
||||
* @param extensionManager - The extension manager containing data sources.
|
||||
*/
|
||||
async function _load(
|
||||
srDisplaySet: OhifTypes.DisplaySet,
|
||||
srDisplaySet: Types.DisplaySet,
|
||||
servicesManager: AppTypes.ServicesManager,
|
||||
extensionManager: AppTypes.ExtensionManager
|
||||
) {
|
||||
@@ -186,10 +176,6 @@ async function _load(
|
||||
srDisplaySet.referencedImages = [];
|
||||
srDisplaySet.measurements = [];
|
||||
}
|
||||
const { predecessorImageId } = srDisplaySet;
|
||||
for (const measurement of srDisplaySet.measurements) {
|
||||
measurement.predecessorImageId = predecessorImageId;
|
||||
}
|
||||
|
||||
const mappings = measurementService.getSourceMappings(
|
||||
CORNERSTONE_3D_TOOLS_SOURCE_NAME,
|
||||
@@ -200,13 +186,8 @@ async function _load(
|
||||
srDisplaySet.isRehydratable = isRehydratable(srDisplaySet, mappings);
|
||||
srDisplaySet.isLoaded = true;
|
||||
|
||||
/** Check currently added displaySets and add measurements if the sources exist.
|
||||
* Walk the SR's study first in default series order (not load order) so SCOORD3D
|
||||
* FrameOfReference matching picks a stable series when several share FOR. */
|
||||
const displaySetsForSRPass = utils.sortDisplaySetsCopy(displaySetService.activeDisplaySets, {
|
||||
studyInstanceUIDFirst: srDisplaySet.StudyInstanceUID,
|
||||
});
|
||||
displaySetsForSRPass.forEach(activeDisplaySet => {
|
||||
/** Check currently added displaySets and add measurements if the sources exist */
|
||||
displaySetService.activeDisplaySets.forEach(activeDisplaySet => {
|
||||
_checkIfCanAddMeasurementsToDisplaySet(
|
||||
srDisplaySet,
|
||||
activeDisplaySet,
|
||||
@@ -233,15 +214,17 @@ async function _load(
|
||||
});
|
||||
}
|
||||
|
||||
function _measurementBelongsToDisplaySet({ measurement, displaySet }) {
|
||||
return (
|
||||
measurement.coords[0].ReferencedFrameOfReferenceSequence === displaySet.FrameOfReferenceUID
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Checks if measurements can be added to a display set.
|
||||
*
|
||||
* @param srDisplaySet - The source display set containing measurements.
|
||||
* @param newDisplaySet - The new display set to check if measurements can be added.
|
||||
* @param dataSource - The data source used to retrieve image IDs.
|
||||
* @param servicesManager - The services manager.
|
||||
*/
|
||||
function _checkIfCanAddMeasurementsToDisplaySet(
|
||||
srDisplaySet: OhifTypes.DisplaySet,
|
||||
newDisplaySet: OhifTypes.DisplaySet,
|
||||
srDisplaySet,
|
||||
newDisplaySet,
|
||||
dataSource,
|
||||
servicesManager: AppTypes.ServicesManager
|
||||
) {
|
||||
@@ -251,10 +234,18 @@ function _checkIfCanAddMeasurementsToDisplaySet(
|
||||
measurement => measurement.loaded === false
|
||||
);
|
||||
|
||||
if (!unloadedMeasurements.length || newDisplaySet.unsupported) {
|
||||
if (
|
||||
unloadedMeasurements.length === 0 ||
|
||||
!(newDisplaySet instanceof ImageSet) ||
|
||||
newDisplaySet.unsupported
|
||||
) {
|
||||
return;
|
||||
}
|
||||
|
||||
// const { sopClassUids } = newDisplaySet;
|
||||
// Create a Set for faster lookups
|
||||
// const sopClassUidSet = new Set(sopClassUids);
|
||||
|
||||
// Create a Map to efficiently look up ImageIds by SOPInstanceUID and frame number
|
||||
const imageIdMap = new Map<string, string>();
|
||||
const imageIds = dataSource.getImageIdsForDisplaySet(newDisplaySet);
|
||||
@@ -273,7 +264,6 @@ function _checkIfCanAddMeasurementsToDisplaySet(
|
||||
|
||||
for (let j = unloadedMeasurements.length - 1; j >= 0; j--) {
|
||||
let measurement = unloadedMeasurements[j];
|
||||
const is3DMeasurement = measurement.coords?.[0]?.ValueType === 'SCOORD3D';
|
||||
|
||||
const onBeforeSRAddMeasurement = customizationService.getCustomization(
|
||||
'onBeforeSRAddMeasurement'
|
||||
@@ -288,15 +278,9 @@ function _checkIfCanAddMeasurementsToDisplaySet(
|
||||
}
|
||||
|
||||
// if it is 3d SR we can just add the SR annotation
|
||||
if (
|
||||
is3DSR &&
|
||||
is3DMeasurement &&
|
||||
_measurementBelongsToDisplaySet({ measurement, displaySet: newDisplaySet })
|
||||
) {
|
||||
addSRAnnotation({ measurement, displaySet: newDisplaySet });
|
||||
if (is3DSR) {
|
||||
addSRAnnotation(measurement, null, null);
|
||||
measurement.loaded = true;
|
||||
measurement.displaySetInstanceUID = newDisplaySet.displaySetInstanceUID;
|
||||
unloadedMeasurements.splice(j, 1);
|
||||
continue;
|
||||
}
|
||||
|
||||
@@ -314,12 +298,15 @@ function _checkIfCanAddMeasurementsToDisplaySet(
|
||||
imageId &&
|
||||
_measurementReferencesSOPInstanceUID(measurement, ReferencedSOPInstanceUID, frame)
|
||||
) {
|
||||
addSRAnnotation({ measurement, imageId, frameNumber: frame, displaySet: newDisplaySet });
|
||||
addSRAnnotation(measurement, imageId, frame);
|
||||
|
||||
// Update measurement properties
|
||||
measurement.loaded = true;
|
||||
measurement.imageId = imageId;
|
||||
measurement.displaySetInstanceUID = newDisplaySet.displaySetInstanceUID;
|
||||
measurement.ReferencedSOPInstanceUID = ReferencedSOPInstanceUID;
|
||||
measurement.frameNumber = frame;
|
||||
|
||||
unloadedMeasurements.splice(j, 1);
|
||||
}
|
||||
}
|
||||
@@ -327,10 +314,10 @@ function _checkIfCanAddMeasurementsToDisplaySet(
|
||||
|
||||
/**
|
||||
* Checks if a measurement references a specific SOP Instance UID.
|
||||
* @param {any} measurement - The measurement object.
|
||||
* @param {string} sopInstanceUID - The SOP Instance UID to check against.
|
||||
* @param {number} frameNumber - The frame number to check against (optional).
|
||||
* @returns {boolean} True if the measurement references the specified SOP Instance UID, false otherwise.
|
||||
* @param measurement - The measurement object.
|
||||
* @param SOPInstanceUID - The SOP Instance UID to check against.
|
||||
* @param frameNumber - The frame number to check against (optional).
|
||||
* @returns True if the measurement references the specified SOP Instance UID, false otherwise.
|
||||
*/
|
||||
function _measurementReferencesSOPInstanceUID(measurement, SOPInstanceUID, frameNumber) {
|
||||
const { coords } = measurement;
|
||||
@@ -362,11 +349,12 @@ function _measurementReferencesSOPInstanceUID(measurement, SOPInstanceUID, frame
|
||||
/**
|
||||
* Retrieves the SOP class handler module.
|
||||
*
|
||||
* @param {OhifTypes.Extensions.ExtensionParams} params - The extension parameters.
|
||||
* @returns {Array} An array containing the SOP class handler modules.
|
||||
* @param {Object} options - The options for retrieving the SOP class handler module.
|
||||
* @param {Object} options.servicesManager - The services manager.
|
||||
* @param {Object} options.extensionManager - The extension manager.
|
||||
* @returns {Array} An array containing the SOP class handler module.
|
||||
*/
|
||||
function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams) {
|
||||
const { servicesManager, extensionManager } = params;
|
||||
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
|
||||
const getDisplaySetsFromSeries = instances => {
|
||||
return _getDisplaySetsFromSeries(instances, servicesManager, extensionManager);
|
||||
};
|
||||
@@ -387,8 +375,8 @@ function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams)
|
||||
/**
|
||||
* Retrieves the measurements from the ImagingMeasurementReportContentSequence.
|
||||
*
|
||||
* @param {any[]} imagingMeasurementReportContentSequence - The ImagingMeasurementReportContentSequence array.
|
||||
* @returns {any[]} The array of measurements.
|
||||
* @param {Array} ImagingMeasurementReportContentSequence - The ImagingMeasurementReportContentSequence array.
|
||||
* @returns {Array} - The array of measurements.
|
||||
*/
|
||||
function _getMeasurements(ImagingMeasurementReportContentSequence) {
|
||||
const ImagingMeasurements = ImagingMeasurementReportContentSequence.find(
|
||||
@@ -426,8 +414,8 @@ function _getMeasurements(ImagingMeasurementReportContentSequence) {
|
||||
/**
|
||||
* Retrieves merged content sequences by tracking unique identifiers.
|
||||
*
|
||||
* @param {any[]} measurementGroups - The measurement groups.
|
||||
* @returns {Object} The merged content sequences by tracking unique identifiers.
|
||||
* @param {Array} MeasurementGroups - The measurement groups.
|
||||
* @returns {Object} - The merged content sequences by tracking unique identifiers.
|
||||
*/
|
||||
function _getMergedContentSequencesByTrackingUniqueIdentifiers(MeasurementGroups) {
|
||||
const mergedContentSequencesByTrackingUniqueIdentifiers = {};
|
||||
@@ -474,11 +462,15 @@ function _getMergedContentSequencesByTrackingUniqueIdentifiers(MeasurementGroups
|
||||
* it calls the _processTID1410Measurement function.
|
||||
* Otherwise, it calls the _processNonGeometricallyDefinedMeasurement function.
|
||||
*
|
||||
* @param {any[]} mergedContentSequence - The merged content sequence to process.
|
||||
* @returns {any} The processed measurement result.
|
||||
* @param {Array<Object>} mergedContentSequence - The merged content sequence to process.
|
||||
* @returns {any} - The processed measurement result.
|
||||
*/
|
||||
function _processMeasurement(mergedContentSequence) {
|
||||
if (mergedContentSequence.some(group => isScoordOr3d(group) && !isTextPosition(group))) {
|
||||
if (
|
||||
mergedContentSequence.some(
|
||||
group => group.ValueType === 'SCOORD' || group.ValueType === 'SCOORD3D'
|
||||
)
|
||||
) {
|
||||
return _processTID1410Measurement(mergedContentSequence);
|
||||
}
|
||||
|
||||
@@ -490,8 +482,8 @@ function _processMeasurement(mergedContentSequence) {
|
||||
* TID 1410 style measurements have a SCOORD or SCOORD3D at the top level,
|
||||
* and non-geometric representations where each NUM has "INFERRED FROM" SCOORD/SCOORD3D.
|
||||
*
|
||||
* @param {any[]} mergedContentSequence - The merged content sequence containing the measurements.
|
||||
* @returns {any} The measurement object containing the loaded status, labels, coordinates, tracking unique identifier, and tracking identifier.
|
||||
* @param mergedContentSequence - The merged content sequence containing the measurements.
|
||||
* @returns The measurement object containing the loaded status, labels, coordinates, tracking unique identifier, and tracking identifier.
|
||||
*/
|
||||
function _processTID1410Measurement(mergedContentSequence) {
|
||||
// Need to deal with TID 1410 style measurements, which will have a SCOORD or SCOORD3D at the top level,
|
||||
@@ -516,25 +508,12 @@ function _processTID1410Measurement(mergedContentSequence) {
|
||||
|
||||
const NUMContentItems = mergedContentSequence.filter(group => group.ValueType === 'NUM');
|
||||
|
||||
const { ConceptNameCodeSequence: conceptNameItem } = graphicItem;
|
||||
const { CodeValue: graphicValue, CodingSchemeDesignator: graphicDesignator } = conceptNameItem;
|
||||
const graphicCode = `${graphicDesignator}:${graphicValue}`;
|
||||
|
||||
const pointDataItem = _getCoordsFromSCOORDOrSCOORD3D(graphicItem);
|
||||
const is3DMeasurement = pointDataItem.ValueType === 'SCOORD3D';
|
||||
const pointLength = is3DMeasurement ? 3 : 2;
|
||||
const pointsLength = pointDataItem.GraphicData.length / pointLength;
|
||||
|
||||
const measurement = {
|
||||
loaded: false,
|
||||
labels: [],
|
||||
coords: [pointDataItem],
|
||||
coords: [_getCoordsFromSCOORDOrSCOORD3D(graphicItem)],
|
||||
TrackingUniqueIdentifier: UIDREFContentItem.UID,
|
||||
TrackingIdentifier: TrackingIdentifierContentItem.TextValue,
|
||||
graphicCode,
|
||||
is3DMeasurement,
|
||||
pointsLength,
|
||||
graphicType: pointDataItem.GraphicType,
|
||||
};
|
||||
|
||||
NUMContentItems.forEach(item => {
|
||||
@@ -564,8 +543,8 @@ function _processTID1410Measurement(mergedContentSequence) {
|
||||
/**
|
||||
* Processes the non-geometrically defined measurement from the merged content sequence.
|
||||
*
|
||||
* @param {any[]} mergedContentSequence The merged content sequence containing the measurement data.
|
||||
* @returns {any} The processed measurement object.
|
||||
* @param mergedContentSequence The merged content sequence containing the measurement data.
|
||||
* @returns The processed measurement object.
|
||||
*/
|
||||
function _processNonGeometricallyDefinedMeasurement(mergedContentSequence) {
|
||||
const NUMContentItems = mergedContentSequence.filter(group => group.ValueType === 'NUM');
|
||||
@@ -585,12 +564,6 @@ function _processNonGeometricallyDefinedMeasurement(mergedContentSequence) {
|
||||
item.ConceptNameCodeSequence.CodeValue === CodeNameCodeSequenceValues.FindingSite
|
||||
);
|
||||
|
||||
const commentSites = mergedContentSequence.filter(
|
||||
item =>
|
||||
item.ConceptNameCodeSequence.CodingSchemeDesignator === COMMENT_CODE.schemeDesignator &&
|
||||
item.ConceptNameCodeSequence.CodeValue === COMMENT_CODE.value
|
||||
);
|
||||
|
||||
const measurement = {
|
||||
loaded: false,
|
||||
labels: [],
|
||||
@@ -599,14 +572,6 @@ function _processNonGeometricallyDefinedMeasurement(mergedContentSequence) {
|
||||
TrackingIdentifier: TrackingIdentifierContentItem.TextValue,
|
||||
};
|
||||
|
||||
if (commentSites) {
|
||||
for (const group of commentSites) {
|
||||
if (group.TextValue) {
|
||||
measurement.labels.push({ label: group.TextValue, value: '' });
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (
|
||||
finding &&
|
||||
CodingSchemeDesignators.CornerstoneCodeSchemes.includes(
|
||||
@@ -642,39 +607,15 @@ function _processNonGeometricallyDefinedMeasurement(mergedContentSequence) {
|
||||
NUMContentItems.forEach(item => {
|
||||
const { ConceptNameCodeSequence, ContentSequence, MeasuredValueSequence } = item;
|
||||
|
||||
// Handle spatial reference ONLY if ContentSequence exists.
|
||||
// ContentSequence may be a scalar SCOORD or an array when additional named
|
||||
// SCOORDs (e.g. control points) are nested alongside the primary geometry.
|
||||
// Pick the primary geometry entry: prefer the SCOORD without a
|
||||
// ConceptNameCodeSequence (plain polyline), falling back to the first SCOORD.
|
||||
if (ContentSequence) {
|
||||
const scoordItem = Array.isArray(ContentSequence)
|
||||
? (ContentSequence.find(
|
||||
cs =>
|
||||
(cs.ValueType === 'SCOORD' || cs.ValueType === 'SCOORD3D') &&
|
||||
!cs.ConceptNameCodeSequence
|
||||
) ?? ContentSequence.find(cs => cs.ValueType === 'SCOORD' || cs.ValueType === 'SCOORD3D'))
|
||||
: ContentSequence;
|
||||
const { ValueType } = ContentSequence;
|
||||
if (!ValueType === 'SCOORD') {
|
||||
console.warn(`Graphic ${ValueType} not currently supported, skipping annotation.`);
|
||||
return;
|
||||
}
|
||||
|
||||
if (!scoordItem) {
|
||||
console.warn(
|
||||
'ContentSequence array contains no SCOORD or SCOORD3D entry, skipping annotation.'
|
||||
);
|
||||
return;
|
||||
}
|
||||
|
||||
const { ValueType } = scoordItem;
|
||||
|
||||
if (ValueType !== 'SCOORD' && ValueType !== 'SCOORD3D') {
|
||||
console.warn(`Graphic ${ValueType} not currently supported, skipping annotation.`);
|
||||
return;
|
||||
}
|
||||
|
||||
const coords = _getCoordsFromSCOORDOrSCOORD3D(scoordItem);
|
||||
|
||||
if (coords) {
|
||||
measurement.coords.push(coords);
|
||||
}
|
||||
const coords = _getCoordsFromSCOORDOrSCOORD3D(ContentSequence);
|
||||
if (coords) {
|
||||
measurement.coords.push(coords);
|
||||
}
|
||||
|
||||
if (MeasuredValueSequence) {
|
||||
@@ -689,8 +630,8 @@ function _processNonGeometricallyDefinedMeasurement(mergedContentSequence) {
|
||||
|
||||
/**
|
||||
* Extracts coordinates from a graphic item of type SCOORD or SCOORD3D.
|
||||
* @param {any} graphicItem - The graphic item containing the coordinates.
|
||||
* @returns {any} The extracted coordinates.
|
||||
* @param {object} graphicItem - The graphic item containing the coordinates.
|
||||
* @returns {object} - The extracted coordinates.
|
||||
*/
|
||||
const _getCoordsFromSCOORDOrSCOORD3D = graphicItem => {
|
||||
const { ValueType, GraphicType, GraphicData } = graphicItem;
|
||||
@@ -704,9 +645,9 @@ const _getCoordsFromSCOORDOrSCOORD3D = graphicItem => {
|
||||
|
||||
/**
|
||||
* Retrieves the label and value from the provided ConceptNameCodeSequence and MeasuredValueSequence.
|
||||
* @param {any} conceptNameCodeSequence - The ConceptNameCodeSequence object.
|
||||
* @param {any} measuredValueSequence - The MeasuredValueSequence object.
|
||||
* @returns {Object} An object containing the label and value.
|
||||
* @param {Object} ConceptNameCodeSequence - The ConceptNameCodeSequence object.
|
||||
* @param {Object} MeasuredValueSequence - The MeasuredValueSequence object.
|
||||
* @returns {Object} - An object containing the label and value.
|
||||
* The label represents the CodeMeaning from the ConceptNameCodeSequence.
|
||||
* The value represents the formatted NumericValue and CodeValue from the MeasuredValueSequence.
|
||||
* Example: { label: 'Long Axis', value: '31.00 mm' }
|
||||
@@ -725,8 +666,8 @@ function _getLabelFromMeasuredValueSequence(ConceptNameCodeSequence, MeasuredVal
|
||||
/**
|
||||
* Retrieves a list of referenced images from the Imaging Measurement Report Content Sequence.
|
||||
*
|
||||
* @param {any[]} imagingMeasurementReportContentSequence - The Imaging Measurement Report Content Sequence.
|
||||
* @returns {any[]} The list of referenced images.
|
||||
* @param {Array} ImagingMeasurementReportContentSequence - The Imaging Measurement Report Content Sequence.
|
||||
* @returns {Array} - The list of referenced images.
|
||||
*/
|
||||
function _getReferencedImagesList(ImagingMeasurementReportContentSequence) {
|
||||
const ImageLibrary = ImagingMeasurementReportContentSequence.find(
|
||||
@@ -773,7 +714,7 @@ function _getReferencedImagesList(ImagingMeasurementReportContentSequence) {
|
||||
* Otherwise, the sequence is wrapped in an array and returned.
|
||||
*
|
||||
* @param {any} sequence - The DICOM sequence to convert.
|
||||
* @returns {any[]} The converted array.
|
||||
* @returns {any[]} - The converted array.
|
||||
*/
|
||||
function _getSequenceAsArray(sequence) {
|
||||
if (!sequence) {
|
||||
@@ -782,17 +723,4 @@ function _getSequenceAsArray(sequence) {
|
||||
return Array.isArray(sequence) ? sequence : [sequence];
|
||||
}
|
||||
|
||||
function isScoordOr3d(group) {
|
||||
return group.ValueType === 'SCOORD' || group.ValueType === 'SCOORD3D';
|
||||
}
|
||||
|
||||
function isTextPosition(group) {
|
||||
const concept = group.ConceptNameCodeSequence[0];
|
||||
return (
|
||||
concept &&
|
||||
concept.CodeValue === TEXT_ANNOTATION_POSITION.value &&
|
||||
concept.CodingSchemeDesignator === TEXT_ANNOTATION_POSITION.schemeDesignator
|
||||
);
|
||||
}
|
||||
|
||||
export default getSopClassHandlerModule;
|
||||
@@ -9,13 +9,19 @@ import {
|
||||
LengthTool,
|
||||
PlanarFreehandROITool,
|
||||
RectangleROITool,
|
||||
utilities as csToolsUtils,
|
||||
} from '@cornerstonejs/tools';
|
||||
import { Types } from '@ohif/core';
|
||||
|
||||
import { Types, MeasurementService } from '@ohif/core';
|
||||
import { StackViewport, utilities as csUtils } from '@cornerstonejs/core';
|
||||
import { Enums as CSExtensionEnums } from '@ohif/extension-cornerstone';
|
||||
import DICOMSRDisplayTool from './tools/DICOMSRDisplayTool';
|
||||
import SCOORD3DPointTool from './tools/SCOORD3DPointTool';
|
||||
import SRSCOOR3DProbeMapper from './utils/SRSCOOR3DProbeMapper';
|
||||
import addToolInstance from './utils/addToolInstance';
|
||||
import toolNames from './tools/toolNames';
|
||||
|
||||
const { CORNERSTONE_3D_TOOLS_SOURCE_NAME, CORNERSTONE_3D_TOOLS_SOURCE_VERSION } = CSExtensionEnums;
|
||||
|
||||
/**
|
||||
* @param {object} configuration
|
||||
*/
|
||||
@@ -23,6 +29,8 @@ export default function init({
|
||||
configuration = {},
|
||||
servicesManager,
|
||||
}: Types.Extensions.ExtensionParams): void {
|
||||
const { measurementService, cornerstoneViewportService } = servicesManager.services;
|
||||
|
||||
addToolInstance(toolNames.DICOMSRDisplay, DICOMSRDisplayTool);
|
||||
addToolInstance(toolNames.SRLength, LengthTool);
|
||||
addToolInstance(toolNames.SRBidirectional, BidirectionalTool);
|
||||
@@ -32,10 +40,26 @@ export default function init({
|
||||
addToolInstance(toolNames.SRAngle, AngleTool);
|
||||
addToolInstance(toolNames.SRPlanarFreehandROI, PlanarFreehandROITool);
|
||||
addToolInstance(toolNames.SRRectangleROI, RectangleROITool);
|
||||
addToolInstance(toolNames.SRSCOORD3DPoint, SCOORD3DPointTool);
|
||||
|
||||
// TODO - fix the SR display of Cobb Angle, as it joins the two lines
|
||||
addToolInstance(toolNames.SRCobbAngle, CobbAngleTool);
|
||||
|
||||
const csTools3DVer1MeasurementSource = measurementService.getSource(
|
||||
CORNERSTONE_3D_TOOLS_SOURCE_NAME,
|
||||
CORNERSTONE_3D_TOOLS_SOURCE_VERSION
|
||||
);
|
||||
|
||||
const { POINT } = measurementService.VALUE_TYPES;
|
||||
|
||||
measurementService.addMapping(
|
||||
csTools3DVer1MeasurementSource,
|
||||
'SRSCOORD3DPoint',
|
||||
POINT,
|
||||
SRSCOOR3DProbeMapper.toAnnotation,
|
||||
SRSCOOR3DProbeMapper.toMeasurement
|
||||
);
|
||||
|
||||
// Modify annotation tools to use dashed lines on SR
|
||||
const dashedLine = {
|
||||
lineDash: '4,4',
|
||||
|
||||
@@ -1,7 +1,11 @@
|
||||
import React from 'react';
|
||||
|
||||
import { SOPClassHandlerId, SOPClassHandlerId3D } from './id';
|
||||
import { ViewportActionButton } from '@ohif/ui-next';
|
||||
import i18n from '@ohif/i18n';
|
||||
|
||||
export default function onModeEnter({ servicesManager }) {
|
||||
const { displaySetService } = servicesManager.services;
|
||||
const { displaySetService, toolbarService } = servicesManager.services;
|
||||
const displaySetCache = displaySetService.getDisplaySetCache();
|
||||
|
||||
const srDisplaySets = [...displaySetCache.values()].filter(
|
||||
@@ -12,4 +16,24 @@ export default function onModeEnter({ servicesManager }) {
|
||||
// New mode route, allow SRs to be hydrated again
|
||||
ds.isHydrated = false;
|
||||
});
|
||||
|
||||
toolbarService.addButtons([
|
||||
{
|
||||
// A base/default button for loading measurements. It is added to the toolbar below.
|
||||
// Customizations to this button can be made in the mode or by another extension.
|
||||
// For example, the button label can be changed and/or the command to clear
|
||||
// the measurements can be dropped.
|
||||
id: 'loadSRMeasurements',
|
||||
component: props => (
|
||||
<ViewportActionButton {...props}>{i18n.t('Common:LOAD')}</ViewportActionButton>
|
||||
),
|
||||
props: {
|
||||
commands: ['clearMeasurements', 'loadSRMeasurements'],
|
||||
},
|
||||
},
|
||||
]);
|
||||
|
||||
// The toolbar used in the viewport's status bar. Modes and extensions can further customize
|
||||
// it to optionally add other buttons.
|
||||
toolbarService.createButtonSection('loadSRMeasurements', ['loadSRMeasurements']);
|
||||
}
|
||||
@@ -0,0 +1,203 @@
|
||||
import { Types, metaData, utilities as csUtils } from '@cornerstonejs/core';
|
||||
import {
|
||||
annotation,
|
||||
drawing,
|
||||
utilities,
|
||||
Types as cs3DToolsTypes,
|
||||
AnnotationDisplayTool,
|
||||
} from '@cornerstonejs/tools';
|
||||
import toolNames from './toolNames';
|
||||
import { Annotation } from '@cornerstonejs/tools/dist/types/types';
|
||||
|
||||
export default class SCOORD3DPointTool extends AnnotationDisplayTool {
|
||||
static toolName = toolNames.SRSCOORD3DPoint;
|
||||
|
||||
constructor(
|
||||
toolProps = {},
|
||||
defaultToolProps = {
|
||||
configuration: {},
|
||||
}
|
||||
) {
|
||||
super(toolProps, defaultToolProps);
|
||||
}
|
||||
|
||||
_getTextBoxLinesFromLabels(labels) {
|
||||
// TODO -> max 5 for now (label + shortAxis + longAxis), need a generic solution for this!
|
||||
|
||||
const labelLength = Math.min(labels.length, 5);
|
||||
const lines = [];
|
||||
|
||||
return lines;
|
||||
}
|
||||
|
||||
// This tool should not inherit from AnnotationTool and we should not need
|
||||
// to add the following lines.
|
||||
isPointNearTool = () => null;
|
||||
getHandleNearImagePoint = () => null;
|
||||
|
||||
renderAnnotation = (enabledElement: Types.IEnabledElement, svgDrawingHelper: any): void => {
|
||||
const { viewport } = enabledElement;
|
||||
const { element } = viewport;
|
||||
|
||||
const annotations = annotation.state.getAnnotations(this.getToolName(), element);
|
||||
|
||||
// Todo: We don't need this anymore, filtering happens in triggerAnnotationRender
|
||||
if (!annotations?.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
// Filter toolData to only render the data for the active SR.
|
||||
const filteredAnnotations = annotations;
|
||||
if (!viewport._actors?.size) {
|
||||
return;
|
||||
}
|
||||
|
||||
const styleSpecifier: cs3DToolsTypes.AnnotationStyle.StyleSpecifier = {
|
||||
toolGroupId: this.toolGroupId,
|
||||
toolName: this.getToolName(),
|
||||
viewportId: enabledElement.viewport.id,
|
||||
};
|
||||
|
||||
for (let i = 0; i < filteredAnnotations.length; i++) {
|
||||
const annotation = filteredAnnotations[i];
|
||||
|
||||
const annotationUID = annotation.annotationUID;
|
||||
const { renderableData } = annotation.data;
|
||||
const { POINT: points } = renderableData;
|
||||
|
||||
styleSpecifier.annotationUID = annotationUID;
|
||||
|
||||
const lineWidth = this.getStyle('lineWidth', styleSpecifier, annotation);
|
||||
const lineDash = this.getStyle('lineDash', styleSpecifier, annotation);
|
||||
const color = this.getStyle('color', styleSpecifier, annotation);
|
||||
|
||||
const options = {
|
||||
color,
|
||||
lineDash,
|
||||
lineWidth,
|
||||
};
|
||||
|
||||
const point = points[0][0];
|
||||
|
||||
// check if viewport can render it
|
||||
const viewable = viewport.isReferenceViewable(
|
||||
{ FrameOfReferenceUID: annotation.metadata.FrameOfReferenceUID, cameraFocalPoint: point },
|
||||
{ asNearbyProjection: true }
|
||||
);
|
||||
|
||||
if (!viewable) {
|
||||
continue;
|
||||
}
|
||||
|
||||
// render the point
|
||||
const arrowPointCanvas = viewport.worldToCanvas(point);
|
||||
// Todo: configure this
|
||||
const arrowEndCanvas = [arrowPointCanvas[0] + 20, arrowPointCanvas[1] + 20];
|
||||
const canvasCoordinates = [arrowPointCanvas, arrowEndCanvas];
|
||||
|
||||
drawing.drawArrow(
|
||||
svgDrawingHelper,
|
||||
annotationUID,
|
||||
'1',
|
||||
canvasCoordinates[1],
|
||||
canvasCoordinates[0],
|
||||
{
|
||||
color: options.color,
|
||||
width: options.lineWidth,
|
||||
}
|
||||
);
|
||||
|
||||
this.renderTextBox(
|
||||
svgDrawingHelper,
|
||||
viewport,
|
||||
canvasCoordinates,
|
||||
annotation,
|
||||
styleSpecifier,
|
||||
options
|
||||
);
|
||||
}
|
||||
};
|
||||
|
||||
renderTextBox(
|
||||
svgDrawingHelper,
|
||||
viewport,
|
||||
canvasCoordinates,
|
||||
annotation,
|
||||
styleSpecifier,
|
||||
options = {}
|
||||
) {
|
||||
if (!canvasCoordinates || !annotation) {
|
||||
return;
|
||||
}
|
||||
|
||||
const { annotationUID, data = {} } = annotation;
|
||||
const { labels } = data;
|
||||
|
||||
const textLines = [];
|
||||
|
||||
for (const label of labels) {
|
||||
// make this generic
|
||||
// fix this
|
||||
if (label.label === '363698007') {
|
||||
textLines.push(`Finding Site: ${label.value}`);
|
||||
}
|
||||
}
|
||||
|
||||
const { color } = options;
|
||||
|
||||
const adaptedCanvasCoordinates = canvasCoordinates;
|
||||
// adapt coordinates if there is an adapter
|
||||
const canvasTextBoxCoords = utilities.drawing.getTextBoxCoordsCanvas(adaptedCanvasCoordinates);
|
||||
|
||||
if (!annotation.data?.handles?.textBox?.worldPosition) {
|
||||
annotation.data.handles.textBox.worldPosition = viewport.canvasToWorld(canvasTextBoxCoords);
|
||||
}
|
||||
|
||||
const textBoxPosition = viewport.worldToCanvas(annotation.data.handles.textBox.worldPosition);
|
||||
|
||||
const textBoxUID = '1';
|
||||
const textBoxOptions = this.getLinkedTextBoxStyle(styleSpecifier, annotation);
|
||||
|
||||
const boundingBox = drawing.drawLinkedTextBox(
|
||||
svgDrawingHelper,
|
||||
annotationUID,
|
||||
textBoxUID,
|
||||
textLines,
|
||||
textBoxPosition,
|
||||
canvasCoordinates,
|
||||
{},
|
||||
{
|
||||
...textBoxOptions,
|
||||
color,
|
||||
}
|
||||
);
|
||||
|
||||
const { x: left, y: top, width, height } = boundingBox;
|
||||
|
||||
annotation.data.handles.textBox.worldBoundingBox = {
|
||||
topLeft: viewport.canvasToWorld([left, top]),
|
||||
topRight: viewport.canvasToWorld([left + width, top]),
|
||||
bottomLeft: viewport.canvasToWorld([left, top + height]),
|
||||
bottomRight: viewport.canvasToWorld([left + width, top + height]),
|
||||
};
|
||||
}
|
||||
|
||||
public getLinkedTextBoxStyle(
|
||||
specifications: cs3DToolsTypes.AnnotationStyle.StyleSpecifier,
|
||||
annotation?: Annotation
|
||||
): Record<string, unknown> {
|
||||
// Todo: this function can be used to set different styles for different toolMode
|
||||
// for the textBox.
|
||||
|
||||
return {
|
||||
visibility: this.getStyle('textBoxVisibility', specifications, annotation),
|
||||
fontFamily: this.getStyle('textBoxFontFamily', specifications, annotation),
|
||||
fontSize: this.getStyle('textBoxFontSize', specifications, annotation),
|
||||
color: this.getStyle('textBoxColor', specifications, annotation),
|
||||
shadow: this.getStyle('textBoxShadow', specifications, annotation),
|
||||
background: this.getStyle('textBoxBackground', specifications, annotation),
|
||||
lineWidth: this.getStyle('textBoxLinkLineWidth', specifications, annotation),
|
||||
lineDash: this.getStyle('textBoxLinkLineDash', specifications, annotation),
|
||||
};
|
||||
}
|
||||
}
|
||||
@@ -9,6 +9,7 @@ const toolNames = {
|
||||
SRCobbAngle: 'SRCobbAngle',
|
||||
SRRectangleROI: 'SRRectangleROI',
|
||||
SRPlanarFreehandROI: 'SRPlanarFreehandROI',
|
||||
SRSCOORD3DPoint: 'SRSCOORD3DPoint',
|
||||
};
|
||||
|
||||
export default toolNames;
|
||||
@@ -0,0 +1,62 @@
|
||||
const SRSCOOR3DProbe = {
|
||||
toAnnotation: measurement => {},
|
||||
|
||||
/**
|
||||
* Maps cornerstone annotation event data to measurement service format.
|
||||
*
|
||||
* @param {Object} cornerstone Cornerstone event data
|
||||
* @return {Measurement} Measurement instance
|
||||
*/
|
||||
toMeasurement: (
|
||||
csToolsEventDetail,
|
||||
displaySetService,
|
||||
CornerstoneViewportService,
|
||||
getValueTypeFromToolType,
|
||||
customizationService
|
||||
) => {
|
||||
const { annotation } = csToolsEventDetail;
|
||||
const { metadata, data, annotationUID } = annotation;
|
||||
|
||||
if (!metadata || !data) {
|
||||
console.warn('Probe tool: Missing metadata or data');
|
||||
return null;
|
||||
}
|
||||
|
||||
const { toolName } = metadata;
|
||||
const { points } = data.handles;
|
||||
|
||||
const displayText = getDisplayText(annotation);
|
||||
return {
|
||||
uid: annotationUID,
|
||||
points,
|
||||
metadata,
|
||||
toolName: metadata.toolName,
|
||||
label: data.label,
|
||||
displayText: displayText,
|
||||
data: data.cachedStats,
|
||||
type: getValueTypeFromToolType?.(toolName) ?? null,
|
||||
};
|
||||
},
|
||||
};
|
||||
|
||||
function getDisplayText(annotation) {
|
||||
const { data } = annotation;
|
||||
|
||||
if (!data) {
|
||||
return [''];
|
||||
}
|
||||
const { labels } = data;
|
||||
|
||||
const displayText = [];
|
||||
|
||||
for (const label of labels) {
|
||||
// make this generic
|
||||
if (label.label === '33636980076') {
|
||||
displayText.push(`Finding Site: ${label.value}`);
|
||||
}
|
||||
}
|
||||
|
||||
return displayText;
|
||||
}
|
||||
|
||||
export default SRSCOOR3DProbe;
|
||||
@@ -1,59 +1,11 @@
|
||||
import { Types, annotation } from '@cornerstonejs/tools';
|
||||
import { metaData } from '@cornerstonejs/core';
|
||||
import { adaptersSR } from '@cornerstonejs/adapters';
|
||||
|
||||
import getRenderableData from './getRenderableData';
|
||||
import toolNames from '../tools/toolNames';
|
||||
|
||||
const { MeasurementReport } = adaptersSR.Cornerstone3D;
|
||||
|
||||
/**
|
||||
* Adds a DICOM SR (Structured Report) annotation to the annotation manager.
|
||||
* This function processes measurement data from DICOM SR and converts it into
|
||||
* a format suitable for display in the Cornerstone3D viewer.
|
||||
*
|
||||
* @param {Object} params - The parameters object
|
||||
* @param {Object} params.measurement - The DICOM SR measurement data containing coordinates, labels, and metadata
|
||||
* @param {Array} params.measurement.coords - Array of coordinate objects with GraphicType, ValueType, and other properties
|
||||
* @param {string} params.measurement.TrackingUniqueIdentifier - Unique identifier for the measurement
|
||||
* @param {string} params.measurement.TrackingIdentifier - Tracking identifier for adapter lookup
|
||||
* @param {Array} [params.measurement.labels] - Optional array of label objects
|
||||
* @param {string} [params.measurement.displayText] - Optional display text for the annotation
|
||||
* @param {Object} [params.measurement.textBox] - Optional text box configuration
|
||||
* @param {string|null} [params.imageId] - Optional image ID for the referenced image (defaults to null)
|
||||
* @param {number|null} [params.frameNumber] - Optional frame number for multi-frame images (defaults to null)
|
||||
* @param {Object} params.displaySet - The display set containing the image
|
||||
* @param {string} params.displaySet.displaySetInstanceUID - Unique identifier for the display set
|
||||
* @returns {void}
|
||||
*
|
||||
* @example
|
||||
* ```typescript
|
||||
* addSRAnnotation({
|
||||
* measurement: {
|
||||
* TrackingUniqueIdentifier: '1.2.3.4.5',
|
||||
* TrackingIdentifier: 'POINT',
|
||||
* coords: [{
|
||||
* GraphicType: 'POINT',
|
||||
* ValueType: 'SCOORD',
|
||||
* // ... other coordinate properties
|
||||
* }],
|
||||
* labels: [{ value: 'Measurement Point' }],
|
||||
* displayText: 'Point measurement'
|
||||
* },
|
||||
* imageId: 'wadouri:file://path/to/image.dcm', // Optional
|
||||
* frameNumber: 0, // Optional
|
||||
* displaySet: { displaySetInstanceUID: '1.2.3.4' }
|
||||
* });
|
||||
* ```
|
||||
*/
|
||||
export default function addSRAnnotation({ measurement, imageId = null, frameNumber = null, displaySet }) {
|
||||
/** @type {string} The tool name to use for the annotation, defaults to DICOMSRDisplay */
|
||||
export default function addSRAnnotation(measurement, imageId, frameNumber) {
|
||||
let toolName = toolNames.DICOMSRDisplay;
|
||||
|
||||
/**
|
||||
* @type {Object} Renderable data organized by graphic type
|
||||
* Groups coordinate data by GraphicType for efficient rendering
|
||||
*/
|
||||
const renderableData = measurement.coords.reduce((acc, coordProps) => {
|
||||
acc[coordProps.GraphicType] = acc[coordProps.GraphicType] || [];
|
||||
acc[coordProps.GraphicType].push(getRenderableData({ ...coordProps, imageId }));
|
||||
@@ -64,58 +16,32 @@ export default function addSRAnnotation({ measurement, imageId = null, frameNumb
|
||||
const { ValueType: valueType, GraphicType: graphicType } = measurement.coords[0];
|
||||
const graphicTypePoints = renderableData[graphicType];
|
||||
|
||||
/**
|
||||
* TODO: Read the tool name from the DICOM SR identification type in the future.
|
||||
*/
|
||||
/** TODO: Read the tool name from the DICOM SR identification type in the future. */
|
||||
let frameOfReferenceUID = null;
|
||||
let planeRestriction = null;
|
||||
|
||||
/**
|
||||
* Store the view reference for use in initial navigation
|
||||
*/
|
||||
if (imageId) {
|
||||
const imagePlaneModule = metaData.get('imagePlaneModule', imageId);
|
||||
frameOfReferenceUID = imagePlaneModule?.frameOfReferenceUID;
|
||||
}
|
||||
|
||||
/**
|
||||
* Store the view reference for use in initial navigation
|
||||
*/
|
||||
if (valueType === 'SCOORD3D') {
|
||||
toolName = toolNames.SRSCOORD3DPoint;
|
||||
|
||||
// get the ReferencedFrameOfReferenceUID from the measurement
|
||||
frameOfReferenceUID = measurement.coords[0].ReferencedFrameOfReferenceSequence;
|
||||
planeRestriction = {
|
||||
FrameOfReferenceUID: frameOfReferenceUID,
|
||||
point: graphicTypePoints[0][0],
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
* Store the view reference for use in initial navigation
|
||||
*/
|
||||
measurement.viewReference = {
|
||||
planeRestriction,
|
||||
FrameOfReferenceUID: frameOfReferenceUID,
|
||||
referencedImageId: imageId,
|
||||
};
|
||||
|
||||
/**
|
||||
* @type {Types.Annotation} The annotation object to be added to the annotation manager
|
||||
* Contains all necessary metadata and data for rendering the DICOM SR measurement
|
||||
*/
|
||||
const SRAnnotation: Types.Annotation = {
|
||||
annotationUID: TrackingUniqueIdentifier,
|
||||
highlighted: false,
|
||||
isLocked: false,
|
||||
isPreview: toolName === toolNames.DICOMSRDisplay,
|
||||
invalidated: false,
|
||||
metadata: {
|
||||
toolName,
|
||||
planeRestriction,
|
||||
valueType,
|
||||
graphicType,
|
||||
FrameOfReferenceUID: frameOfReferenceUID,
|
||||
referencedImageId: imageId,
|
||||
displaySetInstanceUID: displaySet.displaySetInstanceUID,
|
||||
},
|
||||
data: {
|
||||
label: measurement.labels?.[0]?.value || undefined,
|
||||
@@ -133,11 +59,9 @@ export default function addSRAnnotation({ measurement, imageId = null, frameNumb
|
||||
};
|
||||
|
||||
/**
|
||||
* Add the annotation to the annotation state manager.
|
||||
* Note: Using annotation.state.addAnnotation() instead of annotationManager.addAnnotation()
|
||||
* because the latter was not triggering annotation_added events properly.
|
||||
*
|
||||
* @param {Types.Annotation} SRAnnotation - The annotation to add
|
||||
* const annotationManager = annotation.annotationState.getAnnotationManager();
|
||||
* was not triggering annotation_added events.
|
||||
*/
|
||||
annotation.state.addAnnotation(SRAnnotation);
|
||||
console.debug('Adding SR annotation:', SRAnnotation);
|
||||
}
|
||||
@@ -1,11 +1,17 @@
|
||||
import OHIF from '@ohif/core';
|
||||
import { annotation } from '@cornerstonejs/tools';
|
||||
import { NO_IMAGE_ID } from '@cornerstonejs/adapters';
|
||||
const { log } = OHIF;
|
||||
|
||||
function getFilteredCornerstoneToolState(measurementData, additionalFindingTypes) {
|
||||
const filteredToolState = {};
|
||||
|
||||
function addToFilteredToolState(annotation, toolType) {
|
||||
const imageId = annotation.metadata?.referencedImageId ?? NO_IMAGE_ID;
|
||||
if (!annotation.metadata?.referencedImageId) {
|
||||
log.warn(`[DICOMSR] No referencedImageId found for ${toolType} ${annotation.id}`);
|
||||
return;
|
||||
}
|
||||
|
||||
const imageId = annotation.metadata.referencedImageId;
|
||||
|
||||
if (!filteredToolState[imageId]) {
|
||||
filteredToolState[imageId] = {};
|
||||
|
||||
@@ -11,11 +11,7 @@ const { CodeScheme: Cornerstone3DCodeScheme } = adaptersSR.Cornerstone3D;
|
||||
* @returns {string} The extracted label.
|
||||
*/
|
||||
export default function getLabelFromDCMJSImportedToolData(toolData) {
|
||||
const { findingSites = [], finding, annotation } = toolData;
|
||||
|
||||
if (annotation.data.label) {
|
||||
return annotation.data.label;
|
||||
}
|
||||
const { findingSites = [], finding } = toolData;
|
||||
|
||||
let freeTextLabel = findingSites.find(
|
||||
fs => fs.CodeValue === Cornerstone3DCodeScheme.codeValues.CORNERSTONEFREETEXT
|
||||
|
||||
@@ -36,14 +36,6 @@ function getRenderableData({ GraphicType, GraphicData, ValueType, imageId }) {
|
||||
ValueType,
|
||||
imageId,
|
||||
});
|
||||
|
||||
if (!imageId) {
|
||||
// without the image id it's not possible to perform the calculations below
|
||||
// these calculations also do not seem to be needed, since everything works
|
||||
// just fine when we skip them. At least for SCOORD3D annotations.
|
||||
return pointsWorld;
|
||||
}
|
||||
|
||||
// We do not have an explicit draw circle svg helper in Cornerstone3D at
|
||||
// this time, but we can use the ellipse svg helper to draw a circle, so
|
||||
// here we reshape the data for that purpose.
|
||||
@@ -98,13 +90,6 @@ function getRenderableData({ GraphicType, GraphicData, ValueType, imageId }) {
|
||||
imageId,
|
||||
});
|
||||
|
||||
if (!imageId) {
|
||||
// without the image id it's not possible to perform the calculations below
|
||||
// these calculations also do not seem to be needed, since everything works
|
||||
// just fine when we skip them. At least for SCOORD3D annotations.
|
||||
return pointsWorld;
|
||||
}
|
||||
|
||||
const majorAxisStart = vec3.fromValues(...pointsWorld[0]);
|
||||
const majorAxisEnd = vec3.fromValues(...pointsWorld[1]);
|
||||
const minorAxisStart = vec3.fromValues(...pointsWorld[2]);
|
||||
|
||||
@@ -1,16 +1,15 @@
|
||||
import { utilities, metaData, type Types } from '@cornerstonejs/core';
|
||||
import { utilities, metaData } from '@cornerstonejs/core';
|
||||
import OHIF, { DicomMetadataStore } from '@ohif/core';
|
||||
import { vec3 } from 'gl-matrix';
|
||||
|
||||
import getLabelFromDCMJSImportedToolData from './getLabelFromDCMJSImportedToolData';
|
||||
import { adaptersSR } from '@cornerstonejs/adapters';
|
||||
import { annotation as CsAnnotation, type Types as ToolTypes } from '@cornerstonejs/tools';
|
||||
import { annotation as CsAnnotation } from '@cornerstonejs/tools';
|
||||
import { Enums as CSExtensionEnums } from '@ohif/extension-cornerstone';
|
||||
|
||||
const { locking } = CsAnnotation;
|
||||
const { guid } = OHIF.utils;
|
||||
const { MeasurementReport } = adaptersSR.Cornerstone3D;
|
||||
const { MeasurementReport, CORNERSTONE_3D_TAG } = adaptersSR.Cornerstone3D;
|
||||
const { CORNERSTONE_3D_TOOLS_SOURCE_NAME, CORNERSTONE_3D_TOOLS_SOURCE_VERSION } = CSExtensionEnums;
|
||||
const supportedLegacyCornerstoneTags = ['cornerstoneTools@^4.0.0'];
|
||||
|
||||
const convertCode = (codingValues, code) => {
|
||||
if (!code || code.CodingSchemeDesignator === 'CORNERSTONEJS') {
|
||||
@@ -38,10 +37,8 @@ const convertSites = (codingValues, sites) => {
|
||||
};
|
||||
|
||||
/**
|
||||
* Hydrates a structured report
|
||||
* Handles 2d and 3d hydration from SCOORD and SCOORD3D points
|
||||
* For 3D hydration, chooses a volume display set to display with
|
||||
* FOr 2D hydration, chooses the (first) display set containing the referenced image.
|
||||
* Hydrates a structured report, for default viewports.
|
||||
*
|
||||
*/
|
||||
export default function hydrateStructuredReport(
|
||||
{ servicesManager, extensionManager, commandsManager }: withAppTypes,
|
||||
@@ -54,11 +51,6 @@ export default function hydrateStructuredReport(
|
||||
const disableEditing = customizationService.getCustomization('panelMeasurement.disableEditing');
|
||||
|
||||
const displaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
|
||||
const {
|
||||
StudyInstanceUID: studyUID,
|
||||
SeriesInstanceUID: seriesUID,
|
||||
instance: { SOPInstanceUID: sopUID },
|
||||
} = displaySet;
|
||||
|
||||
// TODO -> We should define a strict versioning somewhere.
|
||||
const mappings = measurementService.getSourceMappings(
|
||||
@@ -72,23 +64,31 @@ export default function hydrateStructuredReport(
|
||||
);
|
||||
}
|
||||
|
||||
const instance = DicomMetadataStore.getInstance(studyUID, seriesUID, sopUID);
|
||||
const instance = DicomMetadataStore.getInstance(
|
||||
displaySet.StudyInstanceUID,
|
||||
displaySet.SeriesInstanceUID,
|
||||
displaySet.SOPInstanceUID
|
||||
);
|
||||
|
||||
const sopInstanceUIDToImageId = {};
|
||||
const imageIdsForToolState = {};
|
||||
|
||||
displaySet.measurements.forEach(measurement => {
|
||||
const { ReferencedSOPInstanceUID, imageId, frameNumber = 1 } = measurement;
|
||||
const key = `${ReferencedSOPInstanceUID}:${frameNumber}`;
|
||||
const { ReferencedSOPInstanceUID, imageId, frameNumber } = measurement;
|
||||
|
||||
if (imageId && !sopInstanceUIDToImageId[key]) {
|
||||
sopInstanceUIDToImageId[key] = imageId;
|
||||
if (!sopInstanceUIDToImageId[ReferencedSOPInstanceUID]) {
|
||||
sopInstanceUIDToImageId[ReferencedSOPInstanceUID] = imageId;
|
||||
imageIdsForToolState[ReferencedSOPInstanceUID] = [];
|
||||
}
|
||||
if (!imageIdsForToolState[ReferencedSOPInstanceUID][frameNumber]) {
|
||||
imageIdsForToolState[ReferencedSOPInstanceUID][frameNumber] = imageId;
|
||||
}
|
||||
});
|
||||
|
||||
// Mapping of legacy datasets is now directly handled by adapters module
|
||||
const datasetToUse = instance;
|
||||
|
||||
// Use CS3D adapters to generate toolState.
|
||||
// Use dcmjs to generate toolState.
|
||||
let storedMeasurementByAnnotationType = MeasurementReport.generateToolState(
|
||||
datasetToUse,
|
||||
// NOTE: we need to pass in the imageIds to dcmjs since the we use them
|
||||
@@ -96,6 +96,7 @@ export default function hydrateStructuredReport(
|
||||
// that measurements were added to the display set are the same order as
|
||||
// the measurementGroups in the instance.
|
||||
sopInstanceUIDToImageId,
|
||||
utilities.imageToWorldCoords,
|
||||
metaData
|
||||
);
|
||||
|
||||
@@ -118,17 +119,40 @@ export default function hydrateStructuredReport(
|
||||
}
|
||||
});
|
||||
|
||||
// Set the series touched as tracked.
|
||||
const imageIds = [];
|
||||
|
||||
// TODO: notification if no hydratable?
|
||||
Object.keys(hydratableMeasurementsInSR).forEach(annotationType => {
|
||||
const toolDataForAnnotationType = hydratableMeasurementsInSR[annotationType];
|
||||
|
||||
toolDataForAnnotationType.forEach(toolData => {
|
||||
// Add the measurement to toolState
|
||||
// dcmjs and Cornerstone3D has structural defect in supporting multi-frame
|
||||
// files, and looking up the imageId from sopInstanceUIDToImageId results
|
||||
// in the wrong value.
|
||||
const frameNumber = (toolData.annotation.data && toolData.annotation.data.frameNumber) || 1;
|
||||
const imageId =
|
||||
imageIdsForToolState[toolData.sopInstanceUid][frameNumber] ||
|
||||
sopInstanceUIDToImageId[toolData.sopInstanceUid];
|
||||
|
||||
if (!imageIds.includes(imageId)) {
|
||||
imageIds.push(imageId);
|
||||
}
|
||||
});
|
||||
});
|
||||
|
||||
let targetStudyInstanceUID;
|
||||
const SeriesInstanceUIDs = [];
|
||||
|
||||
// Set the series touched as tracked.
|
||||
const imageIds = getImageIds(hydratableMeasurementsInSR, sopInstanceUIDToImageId);
|
||||
|
||||
for (const imageId of imageIds) {
|
||||
for (let i = 0; i < imageIds.length; i++) {
|
||||
const imageId = imageIds[i];
|
||||
const { SeriesInstanceUID, StudyInstanceUID } = metaData.get('instance', imageId);
|
||||
|
||||
if (!SeriesInstanceUIDs.includes(SeriesInstanceUID)) {
|
||||
SeriesInstanceUIDs.push(SeriesInstanceUID);
|
||||
}
|
||||
|
||||
if (!targetStudyInstanceUID) {
|
||||
targetStudyInstanceUID = StudyInstanceUID;
|
||||
} else if (targetStudyInstanceUID !== StudyInstanceUID) {
|
||||
@@ -136,79 +160,38 @@ export default function hydrateStructuredReport(
|
||||
}
|
||||
}
|
||||
|
||||
// For 3d annotations there are no image IDs,
|
||||
// so we need to find the display sets by frame of reference to get the SeriesInstanceUIDs
|
||||
const frameOfReferenceUIDs = getFrameOfReferenceUIDs(
|
||||
hydratableMeasurementsInSR,
|
||||
sopInstanceUIDToImageId
|
||||
);
|
||||
|
||||
for (const FrameOfReferenceUID of frameOfReferenceUIDs) {
|
||||
const displaySetsFOR = displaySetService.getDisplaySetsBy(
|
||||
ds => ds.FrameOfReferenceUID === FrameOfReferenceUID && !ds.isDerivedDisplaySet
|
||||
);
|
||||
const ds = chooseDisplaySet(displaySetsFOR, FrameOfReferenceUID);
|
||||
if (!ds) {
|
||||
continue;
|
||||
}
|
||||
if (!SeriesInstanceUIDs.includes(ds.SeriesInstanceUID)) {
|
||||
SeriesInstanceUIDs.push(ds.SeriesInstanceUID);
|
||||
}
|
||||
if (!targetStudyInstanceUID) {
|
||||
targetStudyInstanceUID = ds.StudyInstanceUID;
|
||||
} else if (targetStudyInstanceUID !== ds.StudyInstanceUID) {
|
||||
console.warn('NO SUPPORT FOR SRs THAT HAVE MEASUREMENTS FROM MULTIPLE STUDIES.');
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets reference data for what frame of reference and the referenced
|
||||
* image id, or for 3d measurements, the volumeId to apply this annotation to.
|
||||
*/
|
||||
function getReferenceData(toolData): ToolTypes.AnnotationMetadata {
|
||||
// Add the measurement to toolState
|
||||
// dcmjs and Cornerstone3D has structural defect in supporting multi-frame
|
||||
// files, and looking up the imageId from sopInstanceUIDToImageId results
|
||||
// in the wrong value.
|
||||
const frameNumber = (toolData.annotation.data && toolData.annotation.data.frameNumber) || 1;
|
||||
const imageId = sopInstanceUIDToImageId[`${toolData.sopInstanceUid}:${frameNumber}`];
|
||||
|
||||
if (!imageId) {
|
||||
return getReferenceData3D(toolData, servicesManager);
|
||||
}
|
||||
|
||||
const instance = metaData.get('instance', imageId);
|
||||
const {
|
||||
FrameOfReferenceUID,
|
||||
// SOPInstanceUID,
|
||||
// SeriesInstanceUID,
|
||||
// StudyInstanceUID,
|
||||
} = instance;
|
||||
|
||||
return {
|
||||
referencedImageId: imageId,
|
||||
FrameOfReferenceUID,
|
||||
};
|
||||
}
|
||||
|
||||
Object.keys(hydratableMeasurementsInSR).forEach(annotationType => {
|
||||
const toolDataForAnnotationType = hydratableMeasurementsInSR[annotationType];
|
||||
|
||||
toolDataForAnnotationType.forEach(toolData => {
|
||||
// Add the measurement to toolState
|
||||
// dcmjs and Cornerstone3D has structural defect in supporting multi-frame
|
||||
// files, and looking up the imageId from sopInstanceUIDToImageId results
|
||||
// in the wrong value.
|
||||
const frameNumber = (toolData.annotation.data && toolData.annotation.data.frameNumber) || 1;
|
||||
const imageId =
|
||||
imageIdsForToolState[toolData.sopInstanceUid][frameNumber] ||
|
||||
sopInstanceUIDToImageId[toolData.sopInstanceUid];
|
||||
|
||||
toolData.uid = guid();
|
||||
const referenceData = getReferenceData(toolData);
|
||||
const { referencedImageId } = referenceData;
|
||||
|
||||
const instance = metaData.get('instance', imageId);
|
||||
const {
|
||||
FrameOfReferenceUID,
|
||||
// SOPInstanceUID,
|
||||
// SeriesInstanceUID,
|
||||
// StudyInstanceUID,
|
||||
} = instance;
|
||||
|
||||
const annotation = {
|
||||
annotationUID: toolData.annotation.annotationUID,
|
||||
data: toolData.annotation.data,
|
||||
predecessorImageId: toolData.predecessorImageId,
|
||||
metadata: {
|
||||
...referenceData,
|
||||
toolName: annotationType,
|
||||
referencedImageId: imageId,
|
||||
FrameOfReferenceUID,
|
||||
},
|
||||
};
|
||||
utilities.updatePlaneRestriction(annotation.data.handles.points, annotation.metadata);
|
||||
|
||||
const source = measurementService.getSource(
|
||||
CORNERSTONE_3D_TOOLS_SOURCE_NAME,
|
||||
@@ -242,8 +225,8 @@ export default function hydrateStructuredReport(
|
||||
locking.setAnnotationLocked(newAnnotationUID, true);
|
||||
}
|
||||
|
||||
if (referencedImageId && !imageIds.includes(referencedImageId)) {
|
||||
imageIds.push(referencedImageId);
|
||||
if (!imageIds.includes(imageId)) {
|
||||
imageIds.push(imageId);
|
||||
}
|
||||
});
|
||||
});
|
||||
@@ -255,141 +238,3 @@ export default function hydrateStructuredReport(
|
||||
SeriesInstanceUIDs,
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets the unique imageIds from hydratable measurements that have an imageId reference
|
||||
* (i.e., 2D/SCOORD annotations).
|
||||
*/
|
||||
function getImageIds(hydratableMeasurementsInSR, sopInstanceUIDToImageId): string[] {
|
||||
const imageIds: string[] = [];
|
||||
Object.keys(hydratableMeasurementsInSR).forEach(annotationType => {
|
||||
const toolDataForAnnotationType = hydratableMeasurementsInSR[annotationType];
|
||||
|
||||
toolDataForAnnotationType.forEach(toolData => {
|
||||
// Add the measurement to toolState
|
||||
// dcmjs and Cornerstone3D has structural defect in supporting multi-frame
|
||||
// files, and looking up the imageId from sopInstanceUIDToImageId results
|
||||
// in the wrong value.
|
||||
const frameNumber = toolData.annotation.data?.frameNumber || 1;
|
||||
const imageId = sopInstanceUIDToImageId[`${toolData.sopInstanceUid}:${frameNumber}`];
|
||||
|
||||
if (imageId && !imageIds.includes(imageId)) {
|
||||
imageIds.push(imageId);
|
||||
}
|
||||
});
|
||||
});
|
||||
return imageIds;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets the unique FrameOfReferenceUIDs from hydratable measurements that have no imageId reference
|
||||
* (i.e., 3D/SCOORD3D annotations). This excludes annotations handled by the getImageIds function.
|
||||
*/
|
||||
function getFrameOfReferenceUIDs(hydratableMeasurementsInSR, sopInstanceUIDToImageId): string[] {
|
||||
const frameOfReferenceUIDs: string[] = [];
|
||||
|
||||
Object.keys(hydratableMeasurementsInSR).forEach(annotationType => {
|
||||
const toolDataForAnnotationType = hydratableMeasurementsInSR[annotationType];
|
||||
toolDataForAnnotationType.forEach(toolData => {
|
||||
const frameNumber = toolData.annotation.data?.frameNumber || 1;
|
||||
const imageId = sopInstanceUIDToImageId[`${toolData.sopInstanceUid}:${frameNumber}`];
|
||||
|
||||
if (!imageId) {
|
||||
const { FrameOfReferenceUID } = toolData.annotation.metadata;
|
||||
if (FrameOfReferenceUID && !frameOfReferenceUIDs.includes(FrameOfReferenceUID)) {
|
||||
frameOfReferenceUIDs.push(FrameOfReferenceUID);
|
||||
}
|
||||
}
|
||||
});
|
||||
});
|
||||
return frameOfReferenceUIDs;
|
||||
}
|
||||
|
||||
/**
|
||||
* For 3d annotations, there are often several display sets which could
|
||||
* be used to display the annotation. Choose the first annotation with the
|
||||
* same frame of reference that is reconstructable, or the first display set
|
||||
* otherwise.
|
||||
*/
|
||||
function chooseDisplaySet(displaySets, reference) {
|
||||
if (!displaySets?.length) {
|
||||
console.warn('No display set found for', reference);
|
||||
return;
|
||||
}
|
||||
if (displaySets.length === 1) {
|
||||
return displaySets[0];
|
||||
}
|
||||
const volumeDs = displaySets.find(ds => ds.isReconstructable);
|
||||
if (volumeDs) {
|
||||
return volumeDs;
|
||||
}
|
||||
return displaySets[0];
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets the additional reference data appropriate for a 3d reference.
|
||||
* This will choose a volume id, frame of reference and a plane restriction.
|
||||
*/
|
||||
function getReferenceData3D(toolData, servicesManager: Types.ServicesManager) {
|
||||
const { FrameOfReferenceUID } = toolData.annotation.metadata;
|
||||
const { points } = toolData.annotation.data.handles;
|
||||
const { displaySetService } = servicesManager.services;
|
||||
const displaySetsFOR = displaySetService.getDisplaySetsBy(
|
||||
ds => ds.FrameOfReferenceUID === FrameOfReferenceUID
|
||||
);
|
||||
if (!displaySetsFOR.length || !points?.length) {
|
||||
return {
|
||||
FrameOfReferenceUID,
|
||||
};
|
||||
}
|
||||
const ds = chooseDisplaySet(displaySetsFOR, toolData.annotation);
|
||||
const cameraView = chooseCameraView(ds, points);
|
||||
|
||||
const viewReference = {
|
||||
...cameraView,
|
||||
volumeId: ds.displaySetInstanceUID,
|
||||
FrameOfReferenceUID,
|
||||
};
|
||||
utilities.updatePlaneRestriction(points, viewReference);
|
||||
return viewReference;
|
||||
}
|
||||
|
||||
/**
|
||||
* Chooses a possible camera view - right now this is fairly basic,
|
||||
* just setting the unknowns to null.
|
||||
*/
|
||||
function chooseCameraView(_ds, points) {
|
||||
const selectedPoints = choosePoints(points);
|
||||
const cameraFocalPoint = <Point3>centerOf(selectedPoints);
|
||||
// These are sufficient to be null for now and can be set on first view
|
||||
let viewPlaneNormal: Types.Point3 = null;
|
||||
let viewUp: Types.Point3 = null;
|
||||
|
||||
return {
|
||||
cameraFocalPoint,
|
||||
viewPlaneNormal,
|
||||
viewUp,
|
||||
};
|
||||
}
|
||||
|
||||
function centerOf(points) {
|
||||
const scale = 1 / points.length;
|
||||
const center = vec3.create();
|
||||
for (const point of points) {
|
||||
vec3.scaleAndAdd(center, center, point, scale);
|
||||
}
|
||||
return center;
|
||||
}
|
||||
|
||||
function choosePoints(points) {
|
||||
if (points.length === 1 || points.length === 2) {
|
||||
return points;
|
||||
}
|
||||
const firstIndex = 0;
|
||||
const secondIndex = Math.ceil(points.length / 4);
|
||||
const thirdIndex = Math.ceil(points.length / 2);
|
||||
// TODO - check if colinear, if so try to find another 3 points.
|
||||
|
||||
const newPoints = [points[firstIndex], points[secondIndex], points[thirdIndex]];
|
||||
return newPoints;
|
||||
}
|
||||
@@ -22,20 +22,13 @@ export default function isRehydratable(displaySet, mappings) {
|
||||
const { measurements } = displaySet;
|
||||
|
||||
for (let i = 0; i < measurements.length; i++) {
|
||||
const measurement = measurements[i];
|
||||
if (!measurement) {
|
||||
continue;
|
||||
}
|
||||
const { TrackingIdentifier = '', graphicType, graphicCode, pointsLength } = measurement;
|
||||
if (!TrackingIdentifier && !graphicType) {
|
||||
console.warn('No tracking identifier or graphicType for measurement ', measurement);
|
||||
const { TrackingIdentifier } = measurements[i] || {};
|
||||
if (!TrackingIdentifier) {
|
||||
console.warn('No tracking identifier for measurement ', measurements[i]);
|
||||
continue;
|
||||
}
|
||||
const adapter = MeasurementReport.getAdapterForTrackingIdentifier(TrackingIdentifier);
|
||||
const adapters = MeasurementReport.getAdaptersForTypes(graphicCode, graphicType, pointsLength);
|
||||
const hydratable =
|
||||
(adapter && mappingDefinitions.has(adapter.toolType)) ||
|
||||
(adapters && adapters.some(adapter => mappingDefinitions.has(adapter.toolType)));
|
||||
const hydratable = adapter && mappingDefinitions.has(adapter.toolType);
|
||||
|
||||
if (hydratable) {
|
||||
return true;
|
||||
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dynamic-volume",
|
||||
"version": "3.13.0-beta.63",
|
||||
"version": "3.10.2",
|
||||
"description": "OHIF extension for 4D volumes data",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -29,21 +29,21 @@
|
||||
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.13.0-beta.63",
|
||||
"@ohif/extension-cornerstone": "3.13.0-beta.63",
|
||||
"@ohif/extension-default": "3.13.0-beta.63",
|
||||
"@ohif/i18n": "3.13.0-beta.63",
|
||||
"@ohif/ui": "3.13.0-beta.63",
|
||||
"dcmjs": "0.49.4",
|
||||
"dicom-parser": "1.8.21",
|
||||
"hammerjs": "2.0.8",
|
||||
"prop-types": "15.8.1",
|
||||
"react": "18.3.1"
|
||||
"@ohif/core": "3.10.2",
|
||||
"@ohif/extension-cornerstone": "3.10.2",
|
||||
"@ohif/extension-default": "3.10.2",
|
||||
"@ohif/i18n": "3.10.2",
|
||||
"@ohif/ui": "3.10.2",
|
||||
"dcmjs": "*",
|
||||
"dicom-parser": "^1.8.21",
|
||||
"hammerjs": "^2.0.8",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^18.3.1"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "7.28.2",
|
||||
"@cornerstonejs/core": "4.21.7",
|
||||
"@cornerstonejs/tools": "4.21.7",
|
||||
"classnames": "2.5.1"
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/core": "^3.11.6",
|
||||
"@cornerstonejs/tools": "^3.11.6",
|
||||
"classnames": "^2.3.2"
|
||||
}
|
||||
}
|
||||
@@ -1,10 +1,8 @@
|
||||
import * as importedActions from './actions';
|
||||
import { utilities, Enums } from '@cornerstonejs/tools';
|
||||
import { cache } from '@cornerstonejs/core';
|
||||
import { utils } from '@ohif/core';
|
||||
|
||||
import * as importedActions from './actions';
|
||||
|
||||
const { downloadCsv } = utils;
|
||||
const LABELMAP = Enums.SegmentationRepresentations.Labelmap;
|
||||
|
||||
const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
const services = servicesManager.services;
|
||||
@@ -39,7 +37,7 @@ const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
});
|
||||
return computedDisplaySets;
|
||||
},
|
||||
exportTimeReportCSV: ({ segmentations, summaryStats }) => {
|
||||
exportTimeReportCSV: ({ segmentations, config, options, summaryStats }) => {
|
||||
const dynamic4DDisplaySet = actions.getDynamic4DDisplaySet();
|
||||
|
||||
const volumeId = dynamic4DDisplaySet?.displaySetInstanceUID;
|
||||
@@ -205,7 +203,15 @@ const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
|
||||
// Generate filename and trigger download
|
||||
const filename = `${instance.PatientID}.csv`;
|
||||
downloadCsv(csvContent, { filename });
|
||||
const blob = new Blob([csvContent], { type: 'text/csv;charset=utf-8;' });
|
||||
const link = document.createElement('a');
|
||||
const url = URL.createObjectURL(blob);
|
||||
link.setAttribute('href', url);
|
||||
link.setAttribute('download', filename);
|
||||
link.style.visibility = 'hidden';
|
||||
document.body.appendChild(link);
|
||||
link.click();
|
||||
document.body.removeChild(link);
|
||||
},
|
||||
swapDynamicWithComputedDisplaySet: ({ displaySet }) => {
|
||||
const computedDisplaySet = displaySet;
|
||||
|
||||
@@ -5,8 +5,6 @@ import { PanelSegmentation } from '@ohif/extension-cornerstone';
|
||||
import DynamicExport from './panels/DynamicExport';
|
||||
|
||||
function getPanelModule({ commandsManager, extensionManager, servicesManager, configuration }) {
|
||||
const { toolbarService } = servicesManager.services;
|
||||
|
||||
const wrappedDynamicDataPanel = () => {
|
||||
return (
|
||||
<DynamicDataPanel
|
||||
@@ -21,8 +19,8 @@ function getPanelModule({ commandsManager, extensionManager, servicesManager, co
|
||||
return (
|
||||
<>
|
||||
<Toolbox
|
||||
buttonSectionId={toolbarService.sections.dynamicToolbox}
|
||||
title="Buttons:Threshold Tools"
|
||||
buttonSectionId="dynamic-toolbox"
|
||||
title="Threshold Tools"
|
||||
/>
|
||||
<PanelSegmentation
|
||||
servicesManager={servicesManager}
|
||||
|
||||
@@ -5,7 +5,7 @@ function DynamicDataPanel({ servicesManager, commandsManager, tab }: withAppType
|
||||
return (
|
||||
<>
|
||||
<div
|
||||
className="text-foreground flex flex-col"
|
||||
className="flex flex-col text-white"
|
||||
data-cy={'dynamic-volume-panel'}
|
||||
>
|
||||
<PanelGenerateImage
|
||||
|
||||
@@ -10,7 +10,7 @@ function WorkflowPanel({ servicesManager }: { servicesManager: ServicesManager }
|
||||
return (
|
||||
<div
|
||||
data-cy={'workflow-panel'}
|
||||
className="bg-popover mb-1 px-3 py-4"
|
||||
className="bg-secondary-dark mb-1 px-3 py-4"
|
||||
>
|
||||
<div className="mb-1">Workflow</div>
|
||||
<div>
|
||||
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,13 +1,9 @@
|
||||
const base = require('../../jest.config.base.js');
|
||||
const pkg = require('./package');
|
||||
|
||||
module.exports = {
|
||||
...base,
|
||||
moduleNameMapper: {
|
||||
...base.moduleNameMapper,
|
||||
'@ohif/(.*)': '<rootDir>/../../platform/$1/src',
|
||||
'^@cornerstonejs/([^/]+)/(.*)$': '<rootDir>/../../node_modules/@cornerstonejs/$1/dist/esm/$2',
|
||||
'^@cornerstonejs/([^/]+)$': '<rootDir>/../../node_modules/@cornerstonejs/$1/dist/esm',
|
||||
},
|
||||
displayName: pkg.name,
|
||||
// rootDir: "../.."
|
||||
// testMatch: [
|
||||
// //`<rootDir>/platform/${pack.name}/**/*.spec.js`
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone",
|
||||
"version": "3.13.0-beta.63",
|
||||
"version": "3.10.2",
|
||||
"description": "OHIF extension for Cornerstone",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -31,44 +31,41 @@
|
||||
"dev:cornerstone": "yarn run dev",
|
||||
"build": "cross-env NODE_ENV=production webpack --progress --config .webpack/webpack.prod.js",
|
||||
"build:package-1": "yarn run build",
|
||||
"start": "yarn run dev",
|
||||
"test:unit": "jest --watchAll",
|
||||
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@cornerstonejs/codec-charls": "1.2.3",
|
||||
"@cornerstonejs/codec-libjpeg-turbo-8bit": "1.2.2",
|
||||
"@cornerstonejs/codec-openjpeg": "1.3.0",
|
||||
"@cornerstonejs/codec-openjph": "2.4.7",
|
||||
"@cornerstonejs/dicom-image-loader": "4.21.7",
|
||||
"@ohif/core": "3.13.0-beta.63",
|
||||
"@ohif/ui": "3.13.0-beta.63",
|
||||
"dcmjs": "0.49.4",
|
||||
"dicom-parser": "1.8.21",
|
||||
"hammerjs": "2.0.8",
|
||||
"prop-types": "15.8.1",
|
||||
"react": "18.3.1",
|
||||
"react-dom": "18.3.1",
|
||||
"react-resize-detector": "10.0.1"
|
||||
"@cornerstonejs/codec-charls": "^1.2.3",
|
||||
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
|
||||
"@cornerstonejs/codec-openjpeg": "^1.2.4",
|
||||
"@cornerstonejs/codec-openjph": "^2.4.5",
|
||||
"@cornerstonejs/dicom-image-loader": "^3.11.6",
|
||||
"@ohif/core": "3.10.2",
|
||||
"@ohif/ui": "3.10.2",
|
||||
"dcmjs": "*",
|
||||
"dicom-parser": "^1.8.21",
|
||||
"hammerjs": "^2.0.8",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^18.3.1",
|
||||
"react-dom": "^18.3.1",
|
||||
"react-resize-detector": "^10.0.1"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "7.28.2",
|
||||
"@cornerstonejs/adapters": "4.21.7",
|
||||
"@cornerstonejs/ai": "4.21.7",
|
||||
"@cornerstonejs/core": "4.21.7",
|
||||
"@cornerstonejs/labelmap-interpolation": "4.21.7",
|
||||
"@cornerstonejs/polymorphic-segmentation": "4.21.7",
|
||||
"@cornerstonejs/tools": "4.21.7",
|
||||
"@icr/polyseg-wasm": "0.4.0",
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^3.11.6",
|
||||
"@cornerstonejs/ai": "^3.11.6",
|
||||
"@cornerstonejs/core": "^3.11.6",
|
||||
"@cornerstonejs/labelmap-interpolation": "^3.11.6",
|
||||
"@cornerstonejs/polymorphic-segmentation": "^3.11.6",
|
||||
"@cornerstonejs/tools": "^3.11.6",
|
||||
"@itk-wasm/morphological-contour-interpolation": "1.1.0",
|
||||
"@kitware/vtk.js": "34.15.1",
|
||||
"html2canvas": "1.4.1",
|
||||
"immutability-helper": "3.1.1",
|
||||
"lodash.compact": "3.0.1",
|
||||
"lodash.debounce": "4.0.8",
|
||||
"lodash.flatten": "4.4.0",
|
||||
"lodash.zip": "4.2.0",
|
||||
"shader-loader": "1.3.1",
|
||||
"worker-loader": "3.0.8"
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"html2canvas": "^1.4.1",
|
||||
"lodash.compact": "^3.0.1",
|
||||
"lodash.debounce": "^4.0.8",
|
||||
"lodash.flatten": "^4.4.0",
|
||||
"lodash.merge": "^4.6.2",
|
||||
"lodash.zip": "^4.2.0",
|
||||
"shader-loader": "^1.3.1",
|
||||
"worker-loader": "^3.0.8"
|
||||
}
|
||||
}
|
||||
@@ -2,11 +2,6 @@
|
||||
width: 100%;
|
||||
height: 100%; /* MUST have `height` to prevent resize infinite loop */
|
||||
position: relative;
|
||||
/* Prevent text selection on the entire viewport wrapper */
|
||||
user-select: none;
|
||||
-webkit-user-select: none;
|
||||
-moz-user-select: none;
|
||||
-ms-user-select: none;
|
||||
}
|
||||
|
||||
.cornerstone-viewport-element {
|
||||
@@ -21,26 +16,4 @@
|
||||
/* Prevents the entire page from getting larger
|
||||
when the magnify tool is near the sides/corners of the page */
|
||||
overflow: hidden;
|
||||
|
||||
/* Prevent text selection on the viewport element */
|
||||
user-select: none;
|
||||
-webkit-user-select: none;
|
||||
-moz-user-select: none;
|
||||
-ms-user-select: none;
|
||||
}
|
||||
|
||||
/* Prevent text selection on overlay elements */
|
||||
.noselect {
|
||||
user-select: none;
|
||||
-webkit-user-select: none;
|
||||
-moz-user-select: none;
|
||||
-ms-user-select: none;
|
||||
}
|
||||
|
||||
/* Ensure all elements within viewport wrapper prevent text selection */
|
||||
.viewport-wrapper * {
|
||||
user-select: none;
|
||||
-webkit-user-select: none;
|
||||
-moz-user-select: none;
|
||||
-ms-user-select: none;
|
||||
}
|
||||
@@ -1,7 +1,9 @@
|
||||
import React, { useEffect, useRef, useCallback, useState } from 'react';
|
||||
import { useResizeDetector } from 'react-resize-detector';
|
||||
import * as cs3DTools from '@cornerstonejs/tools';
|
||||
import { Enums, eventTarget, getEnabledElement } from '@cornerstonejs/core';
|
||||
import { MeasurementService, useViewportRef } from '@ohif/core';
|
||||
import { MeasurementService } from '@ohif/core';
|
||||
import { AllInOneMenu } from '@ohif/ui-next';
|
||||
import { useViewportDialog } from '@ohif/ui-next';
|
||||
import type { Types as csTypes } from '@cornerstonejs/core';
|
||||
|
||||
@@ -13,6 +15,8 @@ import CinePlayer from '../components/CinePlayer';
|
||||
import type { Types } from '@ohif/core';
|
||||
|
||||
import OHIFViewportActionCorners from '../components/OHIFViewportActionCorners';
|
||||
import { getWindowLevelActionMenu } from '../components/WindowLevelActionMenu/getWindowLevelActionMenu';
|
||||
import { getViewportDataOverlaySettingsMenu } from '../components/ViewportDataOverlaySettingMenu';
|
||||
import { getViewportPresentations } from '../utils/presentations/getViewportPresentations';
|
||||
import { useSynchronizersStore } from '../stores/useSynchronizersStore';
|
||||
import ActiveViewportBehavior from '../utils/ActiveViewportBehavior';
|
||||
@@ -20,9 +24,6 @@ import { WITH_NAVIGATION } from '../services/ViewportService/CornerstoneViewport
|
||||
|
||||
const STACK = 'stack';
|
||||
|
||||
// Cache for viewport dimensions, persists across component remounts
|
||||
const viewportDimensions = new Map<string, { width: number; height: number }>();
|
||||
|
||||
// Todo: This should be done with expose of internal API similar to react-vtkjs-viewport
|
||||
// Then we don't need to worry about the re-renders if the props change.
|
||||
const OHIFCornerstoneViewport = React.memo(
|
||||
@@ -40,6 +41,7 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
viewportOptions,
|
||||
displaySetOptions,
|
||||
servicesManager,
|
||||
commandsManager,
|
||||
onElementEnabled,
|
||||
// eslint-disable-next-line react/prop-types
|
||||
onElementDisabled,
|
||||
@@ -81,7 +83,6 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
const [scrollbarHeight, setScrollbarHeight] = useState('100px');
|
||||
const [enabledVPElement, setEnabledVPElement] = useState(null);
|
||||
const elementRef = useRef() as React.MutableRefObject<HTMLDivElement>;
|
||||
const viewportRef = useViewportRef(viewportId);
|
||||
|
||||
const {
|
||||
displaySetService,
|
||||
@@ -91,6 +92,7 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
cornerstoneViewportService,
|
||||
segmentationService,
|
||||
cornerstoneCacheService,
|
||||
viewportActionCornersService,
|
||||
customizationService,
|
||||
measurementService,
|
||||
} = servicesManager.services;
|
||||
@@ -103,44 +105,12 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
}, [elementRef]);
|
||||
|
||||
// useCallback for onResize
|
||||
const onResize = useCallback(
|
||||
(entries: ResizeObserverEntry[]) => {
|
||||
if (elementRef.current && entries?.length) {
|
||||
const entry = entries[0];
|
||||
const { width, height } = entry.contentRect;
|
||||
|
||||
const prevDimensions = viewportDimensions.get(viewportId) || { width: 0, height: 0 };
|
||||
|
||||
// Check if dimensions actually changed and then only resize if they have changed
|
||||
const hasDimensionsChanged =
|
||||
prevDimensions.width !== width || prevDimensions.height !== height;
|
||||
|
||||
if (width > 0 && height > 0 && hasDimensionsChanged) {
|
||||
viewportDimensions.set(viewportId, { width, height });
|
||||
// Perform resize operations
|
||||
cornerstoneViewportService.resize();
|
||||
setImageScrollBarHeight();
|
||||
}
|
||||
}
|
||||
},
|
||||
[viewportId, elementRef, cornerstoneViewportService, setImageScrollBarHeight]
|
||||
);
|
||||
|
||||
useEffect(() => {
|
||||
const element = elementRef.current;
|
||||
if (!element) {
|
||||
return;
|
||||
const onResize = useCallback(() => {
|
||||
if (elementRef.current) {
|
||||
cornerstoneViewportService.resize();
|
||||
setImageScrollBarHeight();
|
||||
}
|
||||
|
||||
const resizeObserver = new ResizeObserver(onResize);
|
||||
resizeObserver.observe(element);
|
||||
|
||||
// Cleanup function
|
||||
return () => {
|
||||
resizeObserver.unobserve(element);
|
||||
resizeObserver.disconnect();
|
||||
};
|
||||
}, [onResize]);
|
||||
}, [elementRef]);
|
||||
|
||||
const cleanUpServices = useCallback(
|
||||
viewportInfo => {
|
||||
@@ -151,8 +121,16 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
syncGroupService.removeViewportFromSyncGroup(viewportId, renderingEngineId, syncGroups);
|
||||
|
||||
segmentationService.clearSegmentationRepresentations(viewportId);
|
||||
|
||||
viewportActionCornersService.clear(viewportId);
|
||||
},
|
||||
[viewportId, segmentationService, syncGroupService, toolGroupService]
|
||||
[
|
||||
viewportId,
|
||||
segmentationService,
|
||||
syncGroupService,
|
||||
toolGroupService,
|
||||
viewportActionCornersService,
|
||||
]
|
||||
);
|
||||
|
||||
const elementEnabledHandler = useCallback(
|
||||
@@ -220,7 +198,6 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
}
|
||||
|
||||
cornerstoneViewportService.disableElement(viewportId);
|
||||
viewportRef.unregister();
|
||||
|
||||
eventTarget.removeEventListener(Enums.Events.ELEMENT_ENABLED, elementEnabledHandler);
|
||||
};
|
||||
@@ -304,6 +281,79 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
loadViewportData();
|
||||
}, [viewportOptions, displaySets, dataSource]);
|
||||
|
||||
/**
|
||||
* There are two scenarios for jump to click
|
||||
* 1. Current viewports contain the displaySet that the annotation was drawn on
|
||||
* 2. Current viewports don't contain the displaySet that the annotation was drawn on
|
||||
* and we need to change the viewports displaySet for jumping.
|
||||
* Since measurement_jump happens via events and listeners, the former case is handled
|
||||
* by the measurement_jump direct callback, but the latter case is handled first by
|
||||
* the viewportGrid to set the correct displaySet on the viewport, AND THEN we check
|
||||
* the cache for jumping to see if there is any jump queued, then we jump to the correct slice.
|
||||
*/
|
||||
useEffect(() => {
|
||||
if (isJumpToMeasurementDisabled) {
|
||||
return;
|
||||
}
|
||||
|
||||
const { unsubscribe } = measurementService.subscribe(
|
||||
MeasurementService.EVENTS.JUMP_TO_MEASUREMENT_VIEWPORT,
|
||||
event => handleJumpToMeasurement(event, elementRef, viewportId, cornerstoneViewportService)
|
||||
);
|
||||
|
||||
return () => {
|
||||
unsubscribe();
|
||||
};
|
||||
}, [displaySets, elementRef, viewportId, isJumpToMeasurementDisabled, servicesManager]);
|
||||
|
||||
// Set up the window level action menu in the viewport action corners.
|
||||
useEffect(() => {
|
||||
const windowLevelActionMenu = customizationService.getCustomization(
|
||||
'viewportActionMenu.windowLevelActionMenu'
|
||||
);
|
||||
const segmentationOverlay = customizationService.getCustomization(
|
||||
'viewportActionMenu.segmentationOverlay'
|
||||
);
|
||||
|
||||
if (windowLevelActionMenu?.enabled) {
|
||||
viewportActionCornersService.addComponent({
|
||||
viewportId,
|
||||
id: 'windowLevelActionMenu',
|
||||
component: getWindowLevelActionMenu({
|
||||
viewportId,
|
||||
element: elementRef.current,
|
||||
displaySets,
|
||||
servicesManager,
|
||||
commandsManager,
|
||||
location: windowLevelActionMenu.location,
|
||||
verticalDirection: AllInOneMenu.VerticalDirection.TopToBottom,
|
||||
horizontalDirection: AllInOneMenu.HorizontalDirection.RightToLeft,
|
||||
}),
|
||||
location: windowLevelActionMenu.location,
|
||||
});
|
||||
}
|
||||
|
||||
if (segmentationOverlay?.enabled) {
|
||||
viewportActionCornersService.addComponent({
|
||||
viewportId,
|
||||
id: 'segmentation',
|
||||
component: getViewportDataOverlaySettingsMenu({
|
||||
viewportId,
|
||||
element: elementRef.current,
|
||||
displaySets,
|
||||
servicesManager,
|
||||
commandsManager,
|
||||
location: segmentationOverlay.location,
|
||||
}),
|
||||
location: segmentationOverlay.location,
|
||||
});
|
||||
}
|
||||
}, [displaySets, viewportId, viewportActionCornersService, servicesManager, commandsManager]);
|
||||
|
||||
const { ref: resizeRef } = useResizeDetector({
|
||||
onResize,
|
||||
});
|
||||
|
||||
const Notification = customizationService.getCustomization('ui.notificationComponent');
|
||||
|
||||
return (
|
||||
@@ -314,12 +364,9 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
style={{ height: '100%', width: '100%' }}
|
||||
onContextMenu={e => e.preventDefault()}
|
||||
onMouseDown={e => e.preventDefault()}
|
||||
data-viewportid={viewportId}
|
||||
ref={el => {
|
||||
resizeRef.current = el;
|
||||
elementRef.current = el;
|
||||
if (el) {
|
||||
viewportRef.register(el);
|
||||
}
|
||||
}}
|
||||
></div>
|
||||
<CornerstoneOverlays
|
||||
@@ -361,6 +408,54 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
areEqual
|
||||
);
|
||||
|
||||
// Helper function to handle jumping to measurements
|
||||
function handleJumpToMeasurement(event, elementRef, viewportId, cornerstoneViewportService) {
|
||||
const { measurement, isConsumed } = event;
|
||||
if (!measurement || isConsumed) {
|
||||
return;
|
||||
}
|
||||
|
||||
const enabledElement = getEnabledElement(elementRef.current);
|
||||
|
||||
if (!enabledElement) {
|
||||
return;
|
||||
}
|
||||
|
||||
const viewport = enabledElement.viewport as csTypes.IStackViewport | csTypes.IVolumeViewport;
|
||||
|
||||
const { metadata, displaySetInstanceUID } = measurement;
|
||||
|
||||
const viewportDisplaySets = cornerstoneViewportService.getViewportDisplaySets(viewportId);
|
||||
|
||||
const showingDisplaySet = viewportDisplaySets.find(
|
||||
ds => ds.displaySetInstanceUID === displaySetInstanceUID
|
||||
);
|
||||
|
||||
let metadataToUse = metadata;
|
||||
// if it is not showing the displaySet we need to remove the FOR from the metadata
|
||||
if (!showingDisplaySet) {
|
||||
metadataToUse = {
|
||||
...metadata,
|
||||
FrameOfReferenceUID: undefined,
|
||||
};
|
||||
}
|
||||
|
||||
// Todo: make it work with cases where we want to define FOR based measurements too
|
||||
if (!viewport.isReferenceViewable(metadataToUse, WITH_NAVIGATION)) {
|
||||
return;
|
||||
}
|
||||
|
||||
try {
|
||||
viewport.setViewReference(metadata);
|
||||
viewport.render();
|
||||
} catch (e) {
|
||||
console.warn('Unable to apply', metadata, e);
|
||||
}
|
||||
|
||||
cs3DTools.annotation.selection.setAnnotationSelected(measurement.uid);
|
||||
event?.consume?.();
|
||||
}
|
||||
|
||||
function _rehydrateSynchronizers(viewportId: string, syncGroupService: any) {
|
||||
const { synchronizersStore } = useSynchronizersStore.getState();
|
||||
const synchronizers = synchronizersStore[viewportId];
|
||||
@@ -421,18 +516,22 @@ OHIFCornerstoneViewport.displayName = 'OHIFCornerstoneViewport';
|
||||
|
||||
function areEqual(prevProps, nextProps) {
|
||||
if (nextProps.needsRerendering) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: needsRerendering');
|
||||
return false;
|
||||
}
|
||||
|
||||
if (prevProps.displaySets.length !== nextProps.displaySets.length) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: displaySets length change');
|
||||
return false;
|
||||
}
|
||||
|
||||
if (prevProps.viewportOptions.orientation !== nextProps.viewportOptions.orientation) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: orientation change');
|
||||
return false;
|
||||
}
|
||||
|
||||
if (prevProps.viewportOptions.toolGroupId !== nextProps.viewportOptions.toolGroupId) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: toolGroupId change');
|
||||
return false;
|
||||
}
|
||||
|
||||
@@ -440,10 +539,12 @@ function areEqual(prevProps, nextProps) {
|
||||
nextProps.viewportOptions.viewportType &&
|
||||
prevProps.viewportOptions.viewportType !== nextProps.viewportOptions.viewportType
|
||||
) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: viewportType change');
|
||||
return false;
|
||||
}
|
||||
|
||||
if (nextProps.viewportOptions.needsRerendering) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: viewportOptions.needsRerendering');
|
||||
return false;
|
||||
}
|
||||
|
||||
@@ -451,6 +552,7 @@ function areEqual(prevProps, nextProps) {
|
||||
const nextDisplaySets = nextProps.displaySets;
|
||||
|
||||
if (prevDisplaySets.length !== nextDisplaySets.length) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: displaySets length mismatch');
|
||||
return false;
|
||||
}
|
||||
|
||||
@@ -463,11 +565,13 @@ function areEqual(prevProps, nextProps) {
|
||||
);
|
||||
|
||||
if (!foundDisplaySet) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: displaySet not found');
|
||||
return false;
|
||||
}
|
||||
|
||||
// check they contain the same image
|
||||
if (foundDisplaySet.images?.length !== prevDisplaySet.images?.length) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: images length mismatch');
|
||||
return false;
|
||||
}
|
||||
|
||||
@@ -475,6 +579,7 @@ function areEqual(prevProps, nextProps) {
|
||||
if (foundDisplaySet.images?.length) {
|
||||
for (let j = 0; j < foundDisplaySet.images.length; j++) {
|
||||
if (foundDisplaySet.images[j].imageId !== prevDisplaySet.images[j].imageId) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: imageId mismatch');
|
||||
return false;
|
||||
}
|
||||
}
|
||||
@@ -484,4 +589,16 @@ function areEqual(prevProps, nextProps) {
|
||||
return true;
|
||||
}
|
||||
|
||||
// Helper function to check if display sets have changed
|
||||
function haveDisplaySetsChanged(prevDisplaySets, currentDisplaySets) {
|
||||
if (prevDisplaySets.length !== currentDisplaySets.length) {
|
||||
return true;
|
||||
}
|
||||
|
||||
return currentDisplaySets.some((currentDS, index) => {
|
||||
const prevDS = prevDisplaySets[index];
|
||||
return currentDS.displaySetInstanceUID !== prevDS.displaySetInstanceUID;
|
||||
});
|
||||
}
|
||||
|
||||
export default OHIFCornerstoneViewport;
|
||||
@@ -1,14 +1,13 @@
|
||||
import React, { useEffect, useState } from 'react';
|
||||
|
||||
import ViewportImageScrollbar from './ViewportImageScrollbar';
|
||||
import ViewportSliceProgressScrollbar from './ViewportSliceProgressScrollbar/ViewportSliceProgressScrollbar';
|
||||
import CustomizableViewportOverlay from './CustomizableViewportOverlay';
|
||||
import ViewportOrientationMarkers from './ViewportOrientationMarkers';
|
||||
import ViewportImageSliceLoadingIndicator from './ViewportImageSliceLoadingIndicator';
|
||||
|
||||
function CornerstoneOverlays(props: withAppTypes) {
|
||||
const { viewportId, element, scrollbarHeight, servicesManager } = props;
|
||||
const { cornerstoneViewportService, customizationService } = servicesManager.services;
|
||||
const { cornerstoneViewportService } = servicesManager.services;
|
||||
const [imageSliceData, setImageSliceData] = useState({
|
||||
imageIndex: 0,
|
||||
numberOfSlices: 0,
|
||||
@@ -44,31 +43,17 @@ function CornerstoneOverlays(props: withAppTypes) {
|
||||
}
|
||||
}
|
||||
|
||||
const viewportScrollbarVariant = customizationService.getCustomization('viewportScrollbar.variant');
|
||||
const useProgressScrollbar = viewportScrollbarVariant !== 'legacy';
|
||||
|
||||
return (
|
||||
<div className="noselect">
|
||||
{useProgressScrollbar ? (
|
||||
<ViewportSliceProgressScrollbar
|
||||
viewportId={viewportId}
|
||||
viewportData={viewportData}
|
||||
element={element}
|
||||
imageSliceData={imageSliceData}
|
||||
setImageSliceData={setImageSliceData}
|
||||
servicesManager={servicesManager}
|
||||
/>
|
||||
) : (
|
||||
<ViewportImageScrollbar
|
||||
viewportId={viewportId}
|
||||
viewportData={viewportData}
|
||||
element={element}
|
||||
imageSliceData={imageSliceData}
|
||||
setImageSliceData={setImageSliceData}
|
||||
scrollbarHeight={scrollbarHeight}
|
||||
servicesManager={servicesManager}
|
||||
/>
|
||||
)}
|
||||
<ViewportImageScrollbar
|
||||
viewportId={viewportId}
|
||||
viewportData={viewportData}
|
||||
element={element}
|
||||
imageSliceData={imageSliceData}
|
||||
setImageSliceData={setImageSliceData}
|
||||
scrollbarHeight={scrollbarHeight}
|
||||
servicesManager={servicesManager}
|
||||
/>
|
||||
|
||||
<CustomizableViewportOverlay
|
||||
imageSliceData={imageSliceData}
|
||||
|
||||
@@ -1,17 +1,15 @@
|
||||
import React, { useCallback, useEffect, useMemo, useState } from 'react';
|
||||
import { vec3 } from 'gl-matrix';
|
||||
import PropTypes from 'prop-types';
|
||||
import { metaData, Enums, utilities, eventTarget } from '@cornerstonejs/core';
|
||||
import { Enums as csToolsEnums, UltrasoundPleuraBLineTool } from '@cornerstonejs/tools';
|
||||
import { metaData, Enums, utilities } from '@cornerstonejs/core';
|
||||
import type { ImageSliceData } from '@cornerstonejs/core/types';
|
||||
import { ViewportOverlay, formatDICOMDate } from '@ohif/ui-next';
|
||||
import { ViewportOverlay } from '@ohif/ui-next';
|
||||
import type { InstanceMetadata } from '@ohif/core/src/types';
|
||||
import { formatDICOMTime, formatNumberPrecision } from './utils';
|
||||
import { formatDICOMDate, formatDICOMTime, formatNumberPrecision } from './utils';
|
||||
import { utils } from '@ohif/core';
|
||||
import { StackViewportData, VolumeViewportData } from '../../types/CornerstoneCacheService';
|
||||
|
||||
import './CustomizableViewportOverlay.css';
|
||||
import { useViewportRendering } from '../../hooks';
|
||||
|
||||
const EPSILON = 1e-4;
|
||||
const { formatPN } = utils;
|
||||
@@ -67,9 +65,8 @@ function CustomizableViewportOverlay({
|
||||
}) {
|
||||
const { cornerstoneViewportService, customizationService, toolGroupService, displaySetService } =
|
||||
servicesManager.services;
|
||||
const [voi, setVOI] = useState({ windowCenter: null, windowWidth: null });
|
||||
const [scale, setScale] = useState(1);
|
||||
const [annotationState, setAnnotationState] = useState(0);
|
||||
const { isViewportBackgroundLight: isLight, windowLevel: voi } = useViewportRendering(viewportId);
|
||||
const { imageIndex } = imageSliceData;
|
||||
|
||||
// Historical usage defined the overlays as separate items due to lack of
|
||||
@@ -109,20 +106,30 @@ function CustomizableViewportOverlay({
|
||||
};
|
||||
}, [viewportData, viewportId, instanceNumber, cornerstoneViewportService]);
|
||||
|
||||
const annotationModified = useCallback(evt => {
|
||||
if (evt.detail.annotation.metadata.toolName === UltrasoundPleuraBLineTool.toolName) {
|
||||
// Update the annotation state to trigger a re-render
|
||||
setAnnotationState(prevState => prevState + 1);
|
||||
}
|
||||
}, []);
|
||||
|
||||
/**
|
||||
* Updating the VOI when the viewport changes its voi
|
||||
*/
|
||||
useEffect(() => {
|
||||
eventTarget.addEventListener(csToolsEnums.Events.ANNOTATION_MODIFIED, annotationModified);
|
||||
const updateVOI = eventDetail => {
|
||||
const { range } = eventDetail.detail;
|
||||
|
||||
if (!range) {
|
||||
return;
|
||||
}
|
||||
|
||||
const { lower, upper } = range;
|
||||
const { windowWidth, windowCenter } = utilities.windowLevel.toWindowLevel(lower, upper);
|
||||
|
||||
setVOI({ windowCenter, windowWidth });
|
||||
};
|
||||
|
||||
element.addEventListener(Enums.Events.VOI_MODIFIED, updateVOI);
|
||||
|
||||
return () => {
|
||||
eventTarget.removeEventListener(csToolsEnums.Events.ANNOTATION_MODIFIED, annotationModified);
|
||||
element.removeEventListener(Enums.Events.VOI_MODIFIED, updateVOI);
|
||||
};
|
||||
}, [annotationModified]);
|
||||
}, [viewportId, viewportData, voi, element]);
|
||||
|
||||
/**
|
||||
* Updating the scale when the viewport changes its zoom
|
||||
*/
|
||||
@@ -163,7 +170,6 @@ function CustomizableViewportOverlay({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
customization: item,
|
||||
isLight,
|
||||
formatters: {
|
||||
formatPN,
|
||||
formatDate: formatDICOMDate,
|
||||
@@ -200,8 +206,6 @@ function CustomizableViewportOverlay({
|
||||
voi,
|
||||
scale,
|
||||
instanceNumber,
|
||||
annotationState,
|
||||
isLight,
|
||||
]
|
||||
);
|
||||
|
||||
@@ -215,7 +219,6 @@ function CustomizableViewportOverlay({
|
||||
instanceNumber,
|
||||
viewportId,
|
||||
toolGroupService,
|
||||
isLight,
|
||||
};
|
||||
|
||||
return (
|
||||
@@ -238,8 +241,6 @@ function CustomizableViewportOverlay({
|
||||
topRight={getContent(topRightCustomization, 'topRightOverlayItem')}
|
||||
bottomLeft={getContent(bottomLeftCustomization, 'bottomLeftOverlayItem')}
|
||||
bottomRight={getContent(bottomRightCustomization, 'bottomRightOverlayItem')}
|
||||
color={isLight ? 'text-neutral-dark' : 'text-neutral-light'}
|
||||
shadowClass={isLight ? 'shadow-light' : 'shadow-dark'}
|
||||
/>
|
||||
);
|
||||
}
|
||||
@@ -367,18 +368,16 @@ function OverlayItem(props) {
|
||||
title={title}
|
||||
>
|
||||
{label ? <span className="mr-1 shrink-0">{label}</span> : null}
|
||||
<span className="ml-0 shrink-0">{value}</span>
|
||||
<span className="ml-0 mr-2 shrink-0">{value}</span>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Window Level / Center Overlay item
|
||||
* //
|
||||
*/
|
||||
function VOIOverlayItem({ voi, customization }: OverlayItemProps) {
|
||||
const { windowWidth, windowCenter } = voi;
|
||||
const { title } = customization;
|
||||
if (typeof windowCenter !== 'number' || typeof windowWidth !== 'number') {
|
||||
return null;
|
||||
}
|
||||
@@ -387,11 +386,10 @@ function VOIOverlayItem({ voi, customization }: OverlayItemProps) {
|
||||
<div
|
||||
className="overlay-item flex flex-row"
|
||||
style={{ color: customization?.color }}
|
||||
title={title}
|
||||
>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.70]">W:</span>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.67]">W:</span>
|
||||
<span className="mr-2.5 shrink-0">{windowWidth.toFixed(0)}</span>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.70]">L:</span>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.67]">L:</span>
|
||||
<span className="shrink-0">{windowCenter.toFixed(0)}</span>
|
||||
</div>
|
||||
);
|
||||
@@ -406,7 +404,7 @@ function ZoomOverlayItem({ scale, customization }: OverlayItemProps) {
|
||||
className="overlay-item flex flex-row"
|
||||
style={{ color: (customization && customization.color) || undefined }}
|
||||
>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.70]">Zoom:</span>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.67]">Zoom:</span>
|
||||
<span>{scale.toFixed(2)}x</span>
|
||||
</div>
|
||||
);
|
||||
@@ -421,18 +419,16 @@ function InstanceNumberOverlayItem({
|
||||
customization,
|
||||
}: OverlayItemProps) {
|
||||
const { imageIndex, numberOfSlices } = imageSliceData;
|
||||
const { title } = customization;
|
||||
|
||||
return (
|
||||
<div
|
||||
className="overlay-item flex flex-row"
|
||||
style={{ color: (customization && customization.color) || undefined }}
|
||||
title={title}
|
||||
>
|
||||
<span>
|
||||
{instanceNumber !== undefined && instanceNumber !== null ? (
|
||||
<>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.70]">I:</span>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.67]">I:</span>
|
||||
<span>{`${instanceNumber} (${imageIndex + 1}/${numberOfSlices})`}</span>
|
||||
</>
|
||||
) : (
|
||||
|
||||
@@ -63,7 +63,7 @@ function CornerstoneImageScrollbar({
|
||||
}
|
||||
const { viewportType } = viewportData;
|
||||
const eventId =
|
||||
(viewportType === Enums.ViewportType.STACK && Enums.Events.STACK_NEW_IMAGE) ||
|
||||
(viewportType === Enums.ViewportType.STACK && Enums.Events.STACK_VIEWPORT_SCROLL) ||
|
||||
(viewportType === Enums.ViewportType.ORTHOGRAPHIC && Enums.Events.VOLUME_NEW_IMAGE) ||
|
||||
Enums.Events.IMAGE_RENDERED;
|
||||
|
||||
@@ -72,11 +72,11 @@ function CornerstoneImageScrollbar({
|
||||
if (!viewport || viewport instanceof VolumeViewport3D) {
|
||||
return;
|
||||
}
|
||||
const { imageIndex, newImageIdIndex = imageIndex, imageIdIndex } = event.detail;
|
||||
const { imageIndex, newImageIdIndex = imageIndex } = event.detail;
|
||||
const numberOfSlices = viewport.getNumberOfSlices();
|
||||
// find the index of imageId in the imageIds
|
||||
setImageSliceData({
|
||||
imageIndex: newImageIdIndex ?? imageIdIndex,
|
||||
imageIndex: newImageIdIndex,
|
||||
numberOfSlices,
|
||||
});
|
||||
};
|
||||
|
||||
@@ -51,7 +51,7 @@ function ViewportImageSliceLoadingIndicator({ viewportData, element }) {
|
||||
<>
|
||||
<div className="absolute top-0 left-0 h-full w-full bg-black opacity-50">
|
||||
<div className="transparent flex h-full w-full items-center justify-center">
|
||||
<p className="text-highlight text-xl font-light">
|
||||
<p className="text-primary-light text-xl font-light">
|
||||
<h4>Error Loading Image</h4>
|
||||
<p>An error has occurred.</p>
|
||||
<p>{error}</p>
|
||||
@@ -68,7 +68,7 @@ function ViewportImageSliceLoadingIndicator({ viewportData, element }) {
|
||||
// interacting with the mouse, since scrolling should propagate to the viewport underneath
|
||||
<div className="pointer-events-none absolute top-0 left-0 h-full w-full bg-black opacity-50">
|
||||
<div className="transparent flex h-full w-full items-center justify-center">
|
||||
<p className="text-highlight text-xl font-light">Loading...</p>
|
||||
<p className="text-primary-light text-xl font-light">Loading...</p>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
|
||||
@@ -11,22 +11,18 @@
|
||||
.ViewportOrientationMarkers .top-mid {
|
||||
top: 0.38rem;
|
||||
left: 50%;
|
||||
transform: translateX(-50%);
|
||||
}
|
||||
.ViewportOrientationMarkers .left-mid {
|
||||
top: 50%;
|
||||
top: 47%;
|
||||
left: 0.38rem;
|
||||
transform: translateY(-50%);
|
||||
}
|
||||
.ViewportOrientationMarkers .right-mid {
|
||||
top: 50%;
|
||||
top: 47%;
|
||||
left: calc(100% - var(--marker-width) - var(--scrollbar-width));
|
||||
transform: translateY(-50%);
|
||||
}
|
||||
.ViewportOrientationMarkers .bottom-mid {
|
||||
top: calc(100% - var(--marker-height) - 0.6rem);
|
||||
left: 50%;
|
||||
transform: translateX(-50%);
|
||||
left: 47%;
|
||||
}
|
||||
.ViewportOrientationMarkers .right-mid .orientation-marker-value {
|
||||
display: flex;
|
||||
|
||||
@@ -1,11 +1,11 @@
|
||||
import React, { useEffect, useState, useMemo } from 'react';
|
||||
import classNames from 'classnames';
|
||||
import { metaData, Enums, getEnabledElement } from '@cornerstonejs/core';
|
||||
import { metaData, Enums, Types, getEnabledElement } from '@cornerstonejs/core';
|
||||
import { utilities } from '@cornerstonejs/tools';
|
||||
import { vec3 } from 'gl-matrix';
|
||||
|
||||
import './ViewportOrientationMarkers.css';
|
||||
import { useViewportRendering } from '../../hooks';
|
||||
|
||||
const { getOrientationStringLPS, invertOrientationStringLPS } = utilities.orientation;
|
||||
|
||||
function ViewportOrientationMarkers({
|
||||
@@ -16,36 +16,49 @@ function ViewportOrientationMarkers({
|
||||
servicesManager,
|
||||
orientationMarkers = ['top', 'left'],
|
||||
}: withAppTypes) {
|
||||
const [cameraModifiedTime, setCameraModifiedTime] = useState(0);
|
||||
const { isViewportBackgroundLight: isLight } = useViewportRendering(viewportId);
|
||||
// Rotation is in degrees
|
||||
const [rotation, setRotation] = useState(0);
|
||||
const [flipHorizontal, setFlipHorizontal] = useState(false);
|
||||
const [flipVertical, setFlipVertical] = useState(false);
|
||||
const { cornerstoneViewportService } = servicesManager.services;
|
||||
|
||||
useEffect(() => {
|
||||
const cameraModifiedListener = () => setCameraModifiedTime(Date.now());
|
||||
const cameraModifiedListener = (evt: Types.EventTypes.CameraModifiedEvent) => {
|
||||
const { previousCamera, camera } = evt.detail;
|
||||
|
||||
const { rotation } = camera;
|
||||
if (rotation !== undefined) {
|
||||
setRotation(rotation);
|
||||
}
|
||||
|
||||
if (
|
||||
camera.flipHorizontal !== undefined &&
|
||||
previousCamera.flipHorizontal !== camera.flipHorizontal
|
||||
) {
|
||||
setFlipHorizontal(camera.flipHorizontal);
|
||||
}
|
||||
|
||||
if (
|
||||
camera.flipVertical !== undefined &&
|
||||
previousCamera.flipVertical !== camera.flipVertical
|
||||
) {
|
||||
setFlipVertical(camera.flipVertical);
|
||||
}
|
||||
};
|
||||
|
||||
element.addEventListener(Enums.Events.CAMERA_MODIFIED, cameraModifiedListener);
|
||||
|
||||
return () => {
|
||||
element.removeEventListener(Enums.Events.CAMERA_MODIFIED, cameraModifiedListener);
|
||||
};
|
||||
}, [element]);
|
||||
}, []);
|
||||
|
||||
const markers = useMemo(() => {
|
||||
if (!viewportData || cameraModifiedTime === 0) {
|
||||
return '';
|
||||
}
|
||||
|
||||
if (!element || !getEnabledElement(element)) {
|
||||
console.log(`ViewportOrientationMarkers :: Viewport element not enabled (${viewportId})`);
|
||||
return '';
|
||||
}
|
||||
|
||||
const ohifViewport = cornerstoneViewportService.getViewportInfo(viewportId);
|
||||
|
||||
if (!ohifViewport) {
|
||||
console.log(`ViewportOrientationMarkers :: No viewport (${viewportId})`);
|
||||
if (!viewportData) {
|
||||
return '';
|
||||
}
|
||||
|
||||
let rowCosines, columnCosines, isDefaultValueSetForRowCosine, isDefaultValueSetForColumnCosine;
|
||||
if (viewportData.viewportType === 'stack') {
|
||||
const imageIndex = imageSliceData.imageIndex;
|
||||
const imageId = viewportData.data[0].imageIds?.[imageIndex];
|
||||
@@ -55,33 +68,58 @@ function ViewportOrientationMarkers({
|
||||
return false;
|
||||
}
|
||||
|
||||
const { isDefaultValueSetForRowCosine, isDefaultValueSetForColumnCosine } =
|
||||
metaData.get('imagePlaneModule', imageId) || {};
|
||||
|
||||
if (isDefaultValueSetForColumnCosine || isDefaultValueSetForRowCosine) {
|
||||
({
|
||||
rowCosines,
|
||||
columnCosines,
|
||||
isDefaultValueSetForColumnCosine,
|
||||
isDefaultValueSetForColumnCosine,
|
||||
} = metaData.get('imagePlaneModule', imageId) || {});
|
||||
} else {
|
||||
if (!element || !getEnabledElement(element)) {
|
||||
return '';
|
||||
}
|
||||
|
||||
const { viewport } = getEnabledElement(element);
|
||||
const { viewUp, viewPlaneNormal } = viewport.getCamera();
|
||||
|
||||
const viewRight = vec3.create();
|
||||
vec3.cross(viewRight, viewUp, viewPlaneNormal);
|
||||
|
||||
columnCosines = [-viewUp[0], -viewUp[1], -viewUp[2]];
|
||||
rowCosines = viewRight;
|
||||
}
|
||||
|
||||
const { viewport } = getEnabledElement(element);
|
||||
const p00 = viewport.canvasToWorld([0, 0]);
|
||||
const p10 = viewport.canvasToWorld([1, 0]);
|
||||
const p01 = viewport.canvasToWorld([0, 1]);
|
||||
const rowCosines = vec3.sub(vec3.create(), p10, p00);
|
||||
const columnCosines = vec3.sub(vec3.create(), p01, p00);
|
||||
if (
|
||||
!rowCosines ||
|
||||
!columnCosines ||
|
||||
rotation === undefined ||
|
||||
isDefaultValueSetForRowCosine ||
|
||||
isDefaultValueSetForColumnCosine
|
||||
) {
|
||||
return '';
|
||||
}
|
||||
|
||||
vec3.normalize(rowCosines, rowCosines);
|
||||
vec3.normalize(columnCosines, columnCosines);
|
||||
const markers = _getOrientationMarkers(
|
||||
rowCosines,
|
||||
columnCosines,
|
||||
rotation,
|
||||
flipVertical,
|
||||
flipHorizontal
|
||||
);
|
||||
|
||||
const markers = _getOrientationMarkers(rowCosines, columnCosines);
|
||||
const ohifViewport = cornerstoneViewportService.getViewportInfo(viewportId);
|
||||
|
||||
if (!ohifViewport) {
|
||||
console.log('ViewportOrientationMarkers::No viewport');
|
||||
return null;
|
||||
}
|
||||
|
||||
return orientationMarkers.map((m, index) => (
|
||||
<div
|
||||
className={classNames(
|
||||
'overlay-text',
|
||||
`${m}-mid orientation-marker`,
|
||||
isLight ? 'text-neutral-dark/70' : 'text-neutral-light/70',
|
||||
isLight ? 'shadow-light' : 'shadow-dark',
|
||||
'text-highlight/65',
|
||||
'text-base',
|
||||
'leading-5'
|
||||
)}
|
||||
@@ -90,7 +128,15 @@ function ViewportOrientationMarkers({
|
||||
<div className="orientation-marker-value">{markers[m]}</div>
|
||||
</div>
|
||||
));
|
||||
}, [viewportData, imageSliceData, cameraModifiedTime, orientationMarkers, element, isLight]);
|
||||
}, [
|
||||
viewportData,
|
||||
imageSliceData,
|
||||
rotation,
|
||||
flipVertical,
|
||||
flipHorizontal,
|
||||
orientationMarkers,
|
||||
element,
|
||||
]);
|
||||
|
||||
return <div className="ViewportOrientationMarkers select-none">{markers}</div>;
|
||||
}
|
||||
@@ -102,8 +148,10 @@ function ViewportOrientationMarkers({
|
||||
*
|
||||
* @param {*} rowCosines
|
||||
* @param {*} columnCosines
|
||||
* @param {*} rotation in degrees
|
||||
* @returns
|
||||
*/
|
||||
function _getOrientationMarkers(rowCosines, columnCosines) {
|
||||
function _getOrientationMarkers(rowCosines, columnCosines, rotation, flipVertical, flipHorizontal) {
|
||||
const rowString = getOrientationStringLPS(rowCosines);
|
||||
const columnString = getOrientationStringLPS(columnCosines);
|
||||
const oppositeRowString = invertOrientationStringLPS(rowString);
|
||||
@@ -116,6 +164,43 @@ function _getOrientationMarkers(rowCosines, columnCosines) {
|
||||
bottom: columnString,
|
||||
};
|
||||
|
||||
// If any vertical or horizontal flips are applied, change the orientation strings ahead of
|
||||
// the rotation applications
|
||||
if (flipVertical) {
|
||||
markers.top = invertOrientationStringLPS(markers.top);
|
||||
markers.bottom = invertOrientationStringLPS(markers.bottom);
|
||||
}
|
||||
|
||||
if (flipHorizontal) {
|
||||
markers.left = invertOrientationStringLPS(markers.left);
|
||||
markers.right = invertOrientationStringLPS(markers.right);
|
||||
}
|
||||
|
||||
// Swap the labels accordingly if the viewport has been rotated
|
||||
// This could be done in a more complex way for intermediate rotation values (e.g. 45 degrees)
|
||||
if (rotation === 90 || rotation === -270) {
|
||||
return {
|
||||
top: markers.left,
|
||||
left: invertOrientationStringLPS(markers.top),
|
||||
right: invertOrientationStringLPS(markers.bottom),
|
||||
bottom: markers.right, // left
|
||||
};
|
||||
} else if (rotation === -90 || rotation === 270) {
|
||||
return {
|
||||
top: invertOrientationStringLPS(markers.left),
|
||||
left: markers.top,
|
||||
bottom: markers.left,
|
||||
right: markers.bottom,
|
||||
};
|
||||
} else if (rotation === 180 || rotation === -180) {
|
||||
return {
|
||||
top: invertOrientationStringLPS(markers.top),
|
||||
left: invertOrientationStringLPS(markers.left),
|
||||
bottom: invertOrientationStringLPS(markers.bottom),
|
||||
right: invertOrientationStringLPS(markers.right),
|
||||
};
|
||||
}
|
||||
|
||||
return markers;
|
||||
}
|
||||
|
||||
|
||||
-200
@@ -1,200 +0,0 @@
|
||||
import React, { useMemo } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { VolumeViewport3D, utilities as csUtils } from '@cornerstonejs/core';
|
||||
import {
|
||||
SmartScrollbar,
|
||||
SmartScrollbarTrack,
|
||||
SmartScrollbarFill,
|
||||
SmartScrollbarIndicator,
|
||||
SmartScrollbarEndpoints,
|
||||
} from '@ohif/ui-next';
|
||||
import { getViewportImageIds } from './helpers';
|
||||
import {
|
||||
useLoadedSliceBytes,
|
||||
useProgressScrollbarMode,
|
||||
useViewedSliceBytes,
|
||||
useViewportSliceSync,
|
||||
} from './hooks';
|
||||
import { ViewportSliceProgressScrollbarProps } from './types';
|
||||
|
||||
function ViewportSliceProgressScrollbar({
|
||||
viewportData,
|
||||
viewportId,
|
||||
element,
|
||||
imageSliceData,
|
||||
setImageSliceData,
|
||||
servicesManager,
|
||||
}: ViewportSliceProgressScrollbarProps) {
|
||||
const { cineService, cornerstoneViewportService, customizationService, viewedDataService } =
|
||||
servicesManager.services;
|
||||
|
||||
const showLoadedEndpoints =
|
||||
customizationService.getCustomization('viewportScrollbar.showLoadedEndpoints') !== false;
|
||||
const showLoadedFill =
|
||||
customizationService.getCustomization('viewportScrollbar.showLoadedFill') !== false;
|
||||
const showViewedFill =
|
||||
customizationService.getCustomization('viewportScrollbar.showViewedFill') !== false;
|
||||
const showLoadingPattern =
|
||||
customizationService.getCustomization('viewportScrollbar.showLoadingPattern') !== false;
|
||||
const viewedDwellMsRaw = customizationService.getCustomization('viewportScrollbar.viewedDwellMs');
|
||||
const loadedBatchIntervalMsRaw = customizationService.getCustomization(
|
||||
'viewportScrollbar.loadedBatchIntervalMs'
|
||||
);
|
||||
const viewedDwellMs =
|
||||
typeof viewedDwellMsRaw === 'number' && viewedDwellMsRaw >= 0 ? viewedDwellMsRaw : 0;
|
||||
const loadedBatchIntervalMs =
|
||||
typeof loadedBatchIntervalMsRaw === 'number' && loadedBatchIntervalMsRaw >= 0
|
||||
? loadedBatchIntervalMsRaw
|
||||
: 200;
|
||||
|
||||
const { numberOfSlices, imageIndex } = imageSliceData;
|
||||
|
||||
const imageIds = useMemo(() => getViewportImageIds(viewportData), [viewportData]);
|
||||
const imageIdToIndex = useMemo(() => {
|
||||
const map = new Map<string, number>();
|
||||
for (let i = 0; i < imageIds.length; i++) {
|
||||
const imageId = imageIds[i];
|
||||
if (imageId) {
|
||||
map.set(imageId, i);
|
||||
}
|
||||
}
|
||||
return map;
|
||||
}, [imageIds]);
|
||||
|
||||
const isFullMode = useProgressScrollbarMode({
|
||||
viewportData,
|
||||
viewportId,
|
||||
element,
|
||||
cornerstoneViewportService,
|
||||
});
|
||||
|
||||
useViewportSliceSync({
|
||||
viewportData,
|
||||
viewportId,
|
||||
element,
|
||||
cornerstoneViewportService,
|
||||
setImageSliceData,
|
||||
});
|
||||
|
||||
const {
|
||||
bytes: loadedBytes,
|
||||
version: loadedVersion,
|
||||
isFull: isFullyLoaded,
|
||||
} = useLoadedSliceBytes({
|
||||
isFullMode,
|
||||
numberOfSlices,
|
||||
viewportData,
|
||||
imageIds,
|
||||
imageIdToIndex,
|
||||
loadedBatchIntervalMs,
|
||||
});
|
||||
|
||||
const { bytes: viewedBytes, version: viewedVersion } = useViewedSliceBytes({
|
||||
isFullMode,
|
||||
numberOfSlices,
|
||||
imageIndex,
|
||||
imageIds,
|
||||
imageIdToIndex,
|
||||
viewedDwellMs,
|
||||
viewedDataService,
|
||||
});
|
||||
|
||||
const onScrollbarValueChange = targetImageIndex => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
|
||||
if (!viewport || viewport instanceof VolumeViewport3D) {
|
||||
return;
|
||||
}
|
||||
|
||||
const { isCineEnabled } = cineService.getState();
|
||||
|
||||
if (isCineEnabled) {
|
||||
cineService.stopClip(element, { viewportId });
|
||||
cineService.setCine({ id: viewportId, frameRate: undefined, isPlaying: false });
|
||||
}
|
||||
|
||||
csUtils.jumpToSlice(viewport.element, {
|
||||
imageIndex: targetImageIndex,
|
||||
debounceLoading: true,
|
||||
});
|
||||
};
|
||||
|
||||
const isLoading = isFullMode && showLoadingPattern ? !isFullyLoaded : false;
|
||||
|
||||
if (!numberOfSlices || numberOfSlices <= 1) {
|
||||
return null;
|
||||
}
|
||||
|
||||
return (
|
||||
<div
|
||||
style={{
|
||||
position: 'absolute',
|
||||
right: 0,
|
||||
top: 0,
|
||||
height: '100%',
|
||||
padding: '8px 5px',
|
||||
zIndex: 10,
|
||||
}}
|
||||
>
|
||||
<div
|
||||
style={{
|
||||
position: 'relative',
|
||||
height: '100%',
|
||||
width: '11px',
|
||||
}}
|
||||
>
|
||||
<SmartScrollbar
|
||||
className="absolute inset-0"
|
||||
value={imageIndex || 0}
|
||||
total={numberOfSlices}
|
||||
onValueChange={onScrollbarValueChange}
|
||||
isLoading={isLoading}
|
||||
enableKeyboardNavigation={false}
|
||||
aria-label="Image navigation scrollbar"
|
||||
indicator={
|
||||
customizationService.getCustomization('viewportScrollbar.indicator') as
|
||||
| Record<string, unknown>
|
||||
| undefined
|
||||
}
|
||||
>
|
||||
<SmartScrollbarTrack>
|
||||
{isFullMode && showLoadedFill && (
|
||||
<SmartScrollbarFill
|
||||
marked={loadedBytes}
|
||||
version={loadedVersion}
|
||||
className="bg-neutral/25"
|
||||
loadingClassName="bg-neutral/50"
|
||||
/>
|
||||
)}
|
||||
{isFullMode && showViewedFill && (
|
||||
<SmartScrollbarFill
|
||||
marked={viewedBytes}
|
||||
version={viewedVersion}
|
||||
className="bg-primary/35"
|
||||
loadingClassName="bg-primary/35"
|
||||
/>
|
||||
)}
|
||||
</SmartScrollbarTrack>
|
||||
<SmartScrollbarIndicator />
|
||||
{isFullMode && showLoadedEndpoints && (
|
||||
<SmartScrollbarEndpoints
|
||||
marked={loadedBytes}
|
||||
version={loadedVersion}
|
||||
/>
|
||||
)}
|
||||
</SmartScrollbar>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
ViewportSliceProgressScrollbar.propTypes = {
|
||||
viewportData: PropTypes.object,
|
||||
viewportId: PropTypes.string.isRequired,
|
||||
element: PropTypes.instanceOf(Element),
|
||||
imageSliceData: PropTypes.object.isRequired,
|
||||
setImageSliceData: PropTypes.func.isRequired,
|
||||
servicesManager: PropTypes.object.isRequired,
|
||||
};
|
||||
|
||||
export default ViewportSliceProgressScrollbar;
|
||||
-40
@@ -1,40 +0,0 @@
|
||||
import { Enums, VolumeViewport3D } from '@cornerstonejs/core';
|
||||
import { ViewportData } from './types';
|
||||
|
||||
export function getImageIndexFromEvent(event): number | undefined {
|
||||
const { imageIndex, newImageIdIndex = imageIndex, imageIdIndex } = event.detail;
|
||||
return newImageIdIndex ?? imageIdIndex;
|
||||
}
|
||||
|
||||
export function getViewportImageIds(viewportData: ViewportData): string[] {
|
||||
if (!viewportData?.data?.length) {
|
||||
return [];
|
||||
}
|
||||
|
||||
const firstData = viewportData.data[0];
|
||||
const volumeImageIds = (firstData as any).volume?.imageIds as string[] | undefined;
|
||||
const datumImageIds = (firstData as any).imageIds as string[] | undefined;
|
||||
|
||||
return volumeImageIds || datumImageIds || [];
|
||||
}
|
||||
|
||||
export function isProgressFullMode(viewportData: ViewportData, viewport): boolean {
|
||||
if (!viewportData || !viewport || viewport instanceof VolumeViewport3D) {
|
||||
return false;
|
||||
}
|
||||
|
||||
if (viewportData.viewportType === Enums.ViewportType.STACK) {
|
||||
return true;
|
||||
}
|
||||
|
||||
if (viewportData.viewportType === Enums.ViewportType.ORTHOGRAPHIC) {
|
||||
return !!viewport.isInAcquisitionPlane?.();
|
||||
}
|
||||
|
||||
return false;
|
||||
}
|
||||
|
||||
export function getImageIdFromCacheEvent(event): string | undefined {
|
||||
const detail = event?.detail;
|
||||
return detail?.imageId || detail?.image?.imageId || detail?.cachedImage?.imageId;
|
||||
}
|
||||
@@ -1,353 +0,0 @@
|
||||
import { useEffect, useRef, useState } from 'react';
|
||||
import {
|
||||
cache as cornerstoneCache,
|
||||
Enums,
|
||||
eventTarget,
|
||||
utilities,
|
||||
VolumeViewport3D,
|
||||
} from '@cornerstonejs/core';
|
||||
import { useByteArray } from '@ohif/ui-next';
|
||||
import { getImageIdFromCacheEvent, getImageIndexFromEvent, isProgressFullMode } from './helpers';
|
||||
import { ImageSliceData, ViewportData } from './types';
|
||||
|
||||
export function useProgressScrollbarMode({
|
||||
viewportData,
|
||||
viewportId,
|
||||
element,
|
||||
cornerstoneViewportService,
|
||||
}: {
|
||||
viewportData: ViewportData;
|
||||
viewportId: string;
|
||||
element: HTMLElement;
|
||||
cornerstoneViewportService: AppTypes.CornerstoneViewportService;
|
||||
}) {
|
||||
const [isFullMode, setIsFullMode] = useState(false);
|
||||
const lastViewPlaneNormalRef = useRef<number[] | null>(null);
|
||||
|
||||
/**
|
||||
* Tracks whether this viewport should render full progress UI (stack or acquisition-plane
|
||||
* orthographic volume) versus minimal UI. We compute once on setup and recompute on each
|
||||
* CAMERA_MODIFIED event so stack->MPR transitions and acquisition-plane changes are reflected
|
||||
* immediately.
|
||||
*/
|
||||
useEffect(() => {
|
||||
if (!viewportData) {
|
||||
return;
|
||||
}
|
||||
|
||||
const updateMode = () => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
const viewportImageData = viewport?.getImageData?.();
|
||||
const nextViewPlaneNormal = viewport?.getCamera?.()?.viewPlaneNormal as number[] | undefined;
|
||||
// Do not update the lastViewPlaneNormalRef until we have a valid viewportImageData.
|
||||
// Without viewportImageData, the viewport is not fully initialized and the isAcquisitionPlane
|
||||
// check will not be accurate.
|
||||
if (viewportImageData && nextViewPlaneNormal) {
|
||||
lastViewPlaneNormalRef.current = [...nextViewPlaneNormal];
|
||||
}
|
||||
const nextMode = isProgressFullMode(viewportData, viewport);
|
||||
setIsFullMode(prevMode => (prevMode === nextMode ? prevMode : nextMode));
|
||||
};
|
||||
|
||||
updateMode();
|
||||
|
||||
const onCameraModified = () => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
const nextViewPlaneNormal = viewport?.getCamera?.()?.viewPlaneNormal as number[] | undefined;
|
||||
const previousViewPlaneNormal = lastViewPlaneNormalRef.current;
|
||||
|
||||
// Ignore camera updates that keep the same orientation (pan/zoom/scroll).
|
||||
if (nextViewPlaneNormal && previousViewPlaneNormal) {
|
||||
if (utilities.isEqual(nextViewPlaneNormal, previousViewPlaneNormal)) {
|
||||
return;
|
||||
}
|
||||
}
|
||||
|
||||
updateMode();
|
||||
};
|
||||
element.addEventListener(Enums.Events.CAMERA_MODIFIED, onCameraModified);
|
||||
|
||||
return () => {
|
||||
element.removeEventListener(Enums.Events.CAMERA_MODIFIED, onCameraModified);
|
||||
};
|
||||
}, [viewportData, viewportId, cornerstoneViewportService, element]);
|
||||
|
||||
return isFullMode;
|
||||
}
|
||||
|
||||
export function useViewportSliceSync({
|
||||
viewportData,
|
||||
viewportId,
|
||||
element,
|
||||
cornerstoneViewportService,
|
||||
setImageSliceData,
|
||||
}: {
|
||||
viewportData: ViewportData;
|
||||
viewportId: string;
|
||||
element: HTMLElement;
|
||||
cornerstoneViewportService: AppTypes.CornerstoneViewportService;
|
||||
setImageSliceData: (data: ImageSliceData) => void;
|
||||
}) {
|
||||
/**
|
||||
* Keeps shared slice state in sync: first initialize from the live viewport snapshot, then
|
||||
* subscribe to navigation/render events for incremental updates while users scroll.
|
||||
*/
|
||||
useEffect(() => {
|
||||
if (!viewportData) {
|
||||
return;
|
||||
}
|
||||
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
if (viewport && !(viewport instanceof VolumeViewport3D)) {
|
||||
try {
|
||||
const currentImageIndex = viewport.getCurrentImageIdIndex();
|
||||
const currentNumberOfSlices = viewport.getNumberOfSlices();
|
||||
|
||||
setImageSliceData({
|
||||
imageIndex: currentImageIndex,
|
||||
numberOfSlices: currentNumberOfSlices,
|
||||
});
|
||||
} catch (error) {
|
||||
console.warn(error);
|
||||
}
|
||||
}
|
||||
|
||||
const { viewportType } = viewportData;
|
||||
const eventId =
|
||||
(viewportType === Enums.ViewportType.STACK && Enums.Events.STACK_NEW_IMAGE) ||
|
||||
(viewportType === Enums.ViewportType.ORTHOGRAPHIC && Enums.Events.VOLUME_NEW_IMAGE) ||
|
||||
Enums.Events.IMAGE_RENDERED;
|
||||
|
||||
const updateIndex = event => {
|
||||
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
if (!viewport || viewport instanceof VolumeViewport3D) {
|
||||
return;
|
||||
}
|
||||
|
||||
const nextImageIndex = getImageIndexFromEvent(event);
|
||||
if (nextImageIndex == null) {
|
||||
return;
|
||||
}
|
||||
const nextNumberOfSlices = viewport.getNumberOfSlices();
|
||||
|
||||
setImageSliceData({
|
||||
imageIndex: nextImageIndex,
|
||||
numberOfSlices: nextNumberOfSlices,
|
||||
});
|
||||
};
|
||||
|
||||
element.addEventListener(eventId, updateIndex);
|
||||
|
||||
return () => {
|
||||
element.removeEventListener(eventId, updateIndex);
|
||||
};
|
||||
}, [viewportData, element, viewportId, cornerstoneViewportService, setImageSliceData]);
|
||||
}
|
||||
|
||||
export function useLoadedSliceBytes({
|
||||
isFullMode,
|
||||
numberOfSlices,
|
||||
viewportData,
|
||||
imageIds,
|
||||
imageIdToIndex,
|
||||
loadedBatchIntervalMs,
|
||||
}: {
|
||||
isFullMode: boolean;
|
||||
numberOfSlices: number;
|
||||
viewportData: ViewportData;
|
||||
imageIds: string[];
|
||||
imageIdToIndex: Map<string, number>;
|
||||
loadedBatchIntervalMs: number;
|
||||
}) {
|
||||
const loadedState = useByteArray(numberOfSlices || 0, loadedBatchIntervalMs);
|
||||
const {
|
||||
resetWith: resetLoaded,
|
||||
setByte: setLoadedByte,
|
||||
clearByte: clearLoadedByte,
|
||||
} = loadedState;
|
||||
|
||||
/**
|
||||
* Keeps the loaded byte array in sync with Cornerstone cache: seed from cache whenever stack /
|
||||
* mode / slice count changes, then subscribe so cache add/remove updates stay incremental.
|
||||
* Seeding runs immediately before registering listeners in the same effect.
|
||||
*/
|
||||
useEffect(() => {
|
||||
if (isFullMode && numberOfSlices) {
|
||||
resetLoaded(bytes => {
|
||||
for (let i = 0; i < bytes.length; i++) {
|
||||
const imageId = imageIds[i];
|
||||
if (imageId && cornerstoneCache.isLoaded(imageId)) {
|
||||
bytes[i] = 1;
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
if (!isFullMode || !viewportData) {
|
||||
return;
|
||||
}
|
||||
|
||||
const markLoaded = event => {
|
||||
const imageId = getImageIdFromCacheEvent(event);
|
||||
if (!imageId) {
|
||||
return;
|
||||
}
|
||||
const index = imageIdToIndex.get(imageId);
|
||||
if (index !== undefined) {
|
||||
setLoadedByte(index);
|
||||
}
|
||||
};
|
||||
|
||||
const markRemoved = event => {
|
||||
const imageId = getImageIdFromCacheEvent(event);
|
||||
if (!imageId) {
|
||||
return;
|
||||
}
|
||||
const index = imageIdToIndex.get(imageId);
|
||||
if (index !== undefined) {
|
||||
clearLoadedByte(index);
|
||||
}
|
||||
};
|
||||
|
||||
eventTarget.addEventListener(Enums.Events.IMAGE_CACHE_IMAGE_ADDED, markLoaded);
|
||||
eventTarget.addEventListener(Enums.Events.IMAGE_CACHE_IMAGE_REMOVED, markRemoved);
|
||||
|
||||
return () => {
|
||||
eventTarget.removeEventListener(Enums.Events.IMAGE_CACHE_IMAGE_ADDED, markLoaded);
|
||||
eventTarget.removeEventListener(Enums.Events.IMAGE_CACHE_IMAGE_REMOVED, markRemoved);
|
||||
};
|
||||
}, [
|
||||
imageIds,
|
||||
isFullMode,
|
||||
numberOfSlices,
|
||||
viewportData,
|
||||
imageIdToIndex,
|
||||
resetLoaded,
|
||||
setLoadedByte,
|
||||
clearLoadedByte,
|
||||
]);
|
||||
|
||||
return loadedState;
|
||||
}
|
||||
|
||||
export function useViewedSliceBytes({
|
||||
isFullMode,
|
||||
numberOfSlices,
|
||||
imageIndex,
|
||||
imageIds,
|
||||
imageIdToIndex,
|
||||
viewedDwellMs,
|
||||
viewedDataService,
|
||||
}: {
|
||||
isFullMode: boolean;
|
||||
numberOfSlices: number;
|
||||
imageIndex: number;
|
||||
imageIds: string[];
|
||||
imageIdToIndex: Map<string, number>;
|
||||
viewedDwellMs: number;
|
||||
viewedDataService: AppTypes.ViewedDataService;
|
||||
}) {
|
||||
const viewedState = useByteArray(numberOfSlices || 0);
|
||||
const { resetWith: resetViewed, setByte: setViewedByte } = viewedState;
|
||||
|
||||
/**
|
||||
* Keeps the viewed byte array in sync with the global viewed-data store: seed from the store
|
||||
* whenever stack / mode / slice count changes, then subscribe so `markDataViewed` updates stay
|
||||
* incremental. Seeding runs immediately before registering the listener in the same effect.
|
||||
*/
|
||||
useEffect(() => {
|
||||
if (isFullMode && numberOfSlices) {
|
||||
resetViewed(bytes => {
|
||||
for (let i = 0; i < bytes.length; i++) {
|
||||
const imageId = imageIds[i];
|
||||
if (imageId && viewedDataService?.isDataViewed(imageId)) {
|
||||
bytes[i] = 1;
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
if (!viewedDataService) {
|
||||
return;
|
||||
}
|
||||
|
||||
const subscription = viewedDataService.subscribeViewedDataChanges(
|
||||
({
|
||||
viewedDataId,
|
||||
viewedDataCleared,
|
||||
}: {
|
||||
viewedDataId?: string;
|
||||
viewedDataCleared?: boolean;
|
||||
}) => {
|
||||
if (!isFullMode || !numberOfSlices) {
|
||||
return;
|
||||
}
|
||||
|
||||
if (viewedDataCleared) {
|
||||
resetViewed(bytes => {
|
||||
bytes.fill(0);
|
||||
});
|
||||
return;
|
||||
}
|
||||
|
||||
const index = imageIdToIndex.get(viewedDataId);
|
||||
if (index !== undefined) {
|
||||
setViewedByte(index);
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
return () => {
|
||||
subscription.unsubscribe();
|
||||
};
|
||||
}, [
|
||||
imageIds,
|
||||
isFullMode,
|
||||
numberOfSlices,
|
||||
imageIdToIndex,
|
||||
resetViewed,
|
||||
setViewedByte,
|
||||
viewedDataService,
|
||||
]);
|
||||
|
||||
/**
|
||||
* Marks slices as viewed in full mode. With `viewedDwellMs === 0`, marking is immediate on
|
||||
* index change; otherwise a dwell timer is used and cleaned up on subsequent changes/unmount.
|
||||
*/
|
||||
useEffect(() => {
|
||||
if (!isFullMode || !numberOfSlices) {
|
||||
return;
|
||||
}
|
||||
|
||||
const markViewed = (targetIndex: number) => {
|
||||
setViewedByte(targetIndex);
|
||||
const imageId = imageIds[targetIndex];
|
||||
if (imageId) {
|
||||
viewedDataService?.markDataViewed(imageId);
|
||||
}
|
||||
};
|
||||
|
||||
if (viewedDwellMs === 0) {
|
||||
markViewed(imageIndex || 0);
|
||||
return;
|
||||
}
|
||||
|
||||
const timerId = window.setTimeout(() => {
|
||||
markViewed(imageIndex || 0);
|
||||
}, viewedDwellMs);
|
||||
|
||||
return () => {
|
||||
window.clearTimeout(timerId);
|
||||
};
|
||||
}, [
|
||||
isFullMode,
|
||||
numberOfSlices,
|
||||
imageIndex,
|
||||
imageIds,
|
||||
setViewedByte,
|
||||
viewedDwellMs,
|
||||
viewedDataService,
|
||||
]);
|
||||
|
||||
return viewedState;
|
||||
}
|
||||
@@ -1 +0,0 @@
|
||||
export { default } from './ViewportSliceProgressScrollbar';
|
||||
@@ -1,17 +0,0 @@
|
||||
import { StackViewportData, VolumeViewportData } from '../../../types/CornerstoneCacheService';
|
||||
|
||||
export type ViewportData = StackViewportData | VolumeViewportData;
|
||||
|
||||
export type ImageSliceData = {
|
||||
imageIndex: number;
|
||||
numberOfSlices: number;
|
||||
};
|
||||
|
||||
export type ViewportSliceProgressScrollbarProps = {
|
||||
viewportData: ViewportData | null;
|
||||
viewportId: string;
|
||||
element: HTMLElement;
|
||||
imageSliceData: ImageSliceData;
|
||||
setImageSliceData: (data: ImageSliceData) => void;
|
||||
servicesManager: AppTypes.ServicesManager;
|
||||
};
|
||||
@@ -1,7 +1,5 @@
|
||||
import moment from 'moment';
|
||||
import i18n from 'i18next';
|
||||
import { metaData } from '@cornerstonejs/core';
|
||||
import { formatDICOMDate } from '@ohif/ui-next';
|
||||
|
||||
/**
|
||||
* Checks if value is valid.
|
||||
@@ -26,6 +24,17 @@ export function formatNumberPrecision(number, precision = 0) {
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Formats DICOM date.
|
||||
*
|
||||
* @param {string} date
|
||||
* @param {string} strFormat
|
||||
* @returns {string} formatted date.
|
||||
*/
|
||||
export function formatDICOMDate(date, strFormat = 'MMM D, YYYY') {
|
||||
return moment(date, 'YYYYMMDD').format(strFormat);
|
||||
}
|
||||
|
||||
/**
|
||||
* DICOM Time is stored as HHmmss.SSS, where:
|
||||
* HH 24 hour time:
|
||||
@@ -62,5 +71,3 @@ export function getCompression(imageId) {
|
||||
|
||||
return 'Lossless / Uncompressed';
|
||||
}
|
||||
|
||||
export { formatDICOMDate };
|
||||
File diff suppressed because it is too large.
Load diff
@@ -55,7 +55,7 @@ const DEFAULT_TYPES = [GroupAccordion, Content, Trigger];
|
||||
* measurements panel for a practical, working example.
|
||||
*/
|
||||
export function AccordionGroup(props) {
|
||||
const { grouping, items, children, sourceChildren } = props;
|
||||
const { grouping, items, children, sourceChildren, type } = props;
|
||||
const childProps = useSystem();
|
||||
let defaultValue = props.defaultValue;
|
||||
const groups = grouping.groupingFunction(items, grouping, childProps);
|
||||
@@ -91,14 +91,14 @@ function DefaultAccordion(props) {
|
||||
return null;
|
||||
}
|
||||
|
||||
if (asChild) {
|
||||
if (Boolean(asChild)) {
|
||||
return React.cloneElement(props.children, props);
|
||||
}
|
||||
|
||||
return (
|
||||
<Accordion
|
||||
type={grouping.type || 'multiple'}
|
||||
className="text-foreground"
|
||||
className="text-white"
|
||||
defaultValue={defaultValue}
|
||||
>
|
||||
{[...groups.entries()].map(([key, group]) => {
|
||||
|
||||
Loaded 100 of 2055 files, more files were not shown because too many files have changed in this diff.
Show more
Reference in new issue
Block a user