chore(release): publish [skip ci]

- @ohif/extension-vtk@1.12.36
 - @ohif/core@2.16.30
 - @ohif/viewer@4.12.42

.circleci/build-and-publish-docs.sh

@@ -0,0 +1,69 @@
+#!/bin/bash
+
+# Set directory to location of this script
+# https://stackoverflow.com/a/3355423/1867984
+cd "$(dirname "$0")"
+
+yarn -v
+node -v
+
+echo 'Installing Gitbook CLI'
+
+yarn global bin
+yarn config get prefix
+yarn config set prefix ~/.yarn
+export PATH="$PATH:`yarn global bin`"
+
+echo 'Running Gitbook installation'
+
+# Generate all version's GitBook output
+# For each directory in /docs ...
+cd ./../docs/
+for D in *; do
+    if [ -d "${D}" ]; then
+
+			echo "Generating output for: ${D}"
+			cd "${D}"
+
+			# Clear previous output, generate new
+			rm -rf _book
+			gitbook install
+			gitbook build
+
+			cd ..
+
+		fi
+done
+
+# Move CNAME File into `latest`
+cp CNAME ./latest/_book/CNAME
+
+# Create a history folder in our latest version's output
+mkdir ./latest/_book/history
+
+# Move each version's files to latest's history folder
+for D in *; do
+	if [ -d "${D}" ]; then
+		if [ "${D}" == v* ] ; then
+
+			echo "Moving ${D} to the latest version's history folder"
+
+			mkdir "./latest/_book/history/${D}"
+			cp -v -r "./${D}/_book"/* "./latest/_book/history/${D}"
+
+		fi
+	fi
+done
+
+# Back to repo root
+cd ..
+
+echo "Done generating documentation output"
+echo 'STARTING PUBLISH'
+
+# WILL ALWAYS FAIL IF INITIATED FROM PR BRANCH
+npx gh-pages \
+  --silent \
+  --repo https://$GITHUB_TOKEN@github.com/OHIF/Viewers.git \
+  --message 'Autogenerated Message: [ci skip]' \
+	--dist docs/latest/_book

.circleci/config.yml

@@ -1,55 +1,81 @@
 version: 2.1
 
+### ABOUT
+#
+# This configuration powers our Circleci.io integration
+#
+# Note:
+# Netlify works independently from this configuration to
+# create pull request previews and to update `https://docs.ohif.org`
+###
+
+## https://github.com/cypress-io/circleci-orb
+##
 orbs:
   codecov: codecov/codecov@1.0.5
-  cypress: cypress-io/cypress@3.4.2
-
+  cypress: cypress-io/cypress@1.26.0
+executors:
+  # Custom executor to override Cypress config
+  deploy-to-prod-executor:
+    docker:
+      - image: 'cypress/browsers:node14.15.0-chrome86-ff82'
+        environment:
+          CYPRESS_BASE_URL: https://ohif-staging.netlify.com/
+  chrome-and-pacs:
+    docker:
+      # Primary container image where all steps run.
+      - image: 'cypress/browsers:node14.15.0-chrome86-ff82'
 defaults: &defaults
   docker:
-    - image: cimg/node:20.18.1
+    - image: cimg/node:14.19
       environment:
-        TERM: xterm
+        TERM: xterm # Enable colors in term
         QUICK_BUILD: true
   working_directory: ~/repo
 
-commands:
-  install_bun:
-    steps:
-      - run:
-          name: Install Bun
-          command: |
-            curl -fsSL https://bun.sh/install | bash -s "bun-v1.2.23"
-            echo 'export BUN_INSTALL="$HOME/.bun"' >> $BASH_ENV
-            echo 'export PATH="$BUN_INSTALL/bin:$PATH"' >> $BASH_ENV
-            source $BASH_ENV
-
 jobs:
+  ###
+  # Workflow: PR_CHECKS
+  ###
   UNIT_TESTS:
     <<: *defaults
-    resource_class: large
     steps:
-      - install_bun
-      - run: node --version
-      - checkout
+      # Update yarn
+      - run: yarn -v
+      # Checkout code and ALL Git Tags
+      - checkout:
+          post:
+            - git fetch --all
+      # - restore_cache:
+      #     name: Restore Yarn and Cypress Package Cache
+      #     keys:
+      #       # when lock file changes, use increasingly general patterns to restore cache
+      #       - yarn-packages-{{ checksum "yarn.lock" }}
+      #       - yarn-packages-
       - run:
           name: Install Dependencies
-          command: bun install --no-save
+          command: yarn install --frozen-lockfile
+      - save_cache:
+          name: Save Yarn Package Cache
+          paths:
+            - ~/.cache ## Cache yarn and Cypress
+          key: yarn-packages-{{ checksum "yarn.lock" }}
       # RUN TESTS
       - run:
           name: 'JavaScript Test Suite'
-          command: bun run test:unit:ci
-      # platform/app
+          command: yarn run test:unit:ci
+      # PLATFORM/VIEWER
       - run:
           name: 'VIEWER: Combine report output'
           command: |
-            viewerCov="/home/circleci/repo/platform/app/coverage"
+            viewerCov="/home/circleci/repo/platform/viewer/coverage"
             touch "${viewerCov}/reports"
             cat "${viewerCov}/clover.xml" >> "${viewerCov}/reports"
             echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
             cat "${viewerCov}/lcov.info" >>"${viewerCov}/reports"
             echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
       - codecov/upload:
-          file: '/home/circleci/repo/platform/app/coverage/reports'
+          file: '/home/circleci/repo/platform/viewer/coverage/reports'
           flags: 'viewer'
       # PLATFORM/CORE
       - run:
@@ -65,132 +91,164 @@ jobs:
           file: '/home/circleci/repo/platform/core/coverage/reports'
           flags: 'core'
 
-  BUILD:
+  ###
+  # Workflow: PR_OPTIONAL_DOCKER_PUBLISH
+  ###
+  DOCKER_PR_PUBLISH:
     <<: *defaults
-    resource_class: large
     steps:
+      # Enable yarn workspaces
+      - run: yarn config set workspaces-experimental true
+
       # Checkout code and ALL Git Tags
-      - checkout
-      - install_bun
+      - checkout:
+          post:
+            - git fetch --all
+
+      # - restore_cache:
+      #     name: Restore Yarn and Cypress Package Cache
+      #     keys:
+      #       # when lock file changes, use increasingly general patterns to restore cache
+      #       - yarn-packages-{{ checksum "yarn.lock" }}
+      #       - yarn-packages-
+
       - run:
           name: Install Dependencies
-          command: bun install --no-save
+          command: yarn install --frozen-lockfile
+
+      - setup_remote_docker:
+          version: 19.03.13
+          docker_layer_caching: false
+
+      - run:
+          name: Build and push Docker image
+          command: |
+            # Remove npm config
+            rm -f ./.npmrc
+            # Set our version number using vars
+            echo $CIRCLE_BUILD_NUM
+            # Build our image, auth, and push
+            docker build --tag ohif/viewer:PR_BUILD-$CIRCLE_BUILD_NUM .
+            echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
+            docker push ohif/viewer:PR_BUILD-$CIRCLE_BUILD_NUM
+
+  ###
+  # Workflow: DEPLOY
+  ###
+  BUILD:
+    <<: *defaults
+    steps:
+      # Checkout code and ALL Git Tags
+      - checkout:
+          post:
+            - git fetch --all
+      # - restore_cache:
+      #     name: Restore Yarn and Cypress Package Cache
+      #     keys:
+      #       # when lock file changes, use increasingly general patterns to restore cache
+      #       - yarn-packages-{{ checksum "yarn.lock" }}
+      #       - yarn-packages-
+      - run:
+          name: Install Dependencies
+          command: yarn install --frozen-lockfile
+      - save_cache:
+          name: Save Yarn Package Cache
+          paths:
+            - ~/.cache ## Cache yarn and Cypress
+          key: yarn-packages-{{ checksum "yarn.lock" }}
       # Build & Test
-      - run:
-          name: 'Perform the versioning before build'
-          command: bun ./version.mjs
       - run:
           name: 'Build the OHIF Viewer'
-          command: bun run build
+          command: yarn run build
           no_output_timeout: 45m
-      - run:
-          name: 'Upload SourceMaps, Send Deploy Notification'
-          command: |
-            # export FILE_1=$(find ./build/static/js -type f -name "2.*.js" -exec basename {} \;)
-            # export FILE_MAIN=$(find ./build/static/js -type f -name "main.*.js" -exec basename {} \;)
-            # export FILE_RUNTIME_MAIN=$(find ./build/static/js -type f -name "runtime~main.*.js" -exec basename {} \;)
-            # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_1.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_1
-            # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_MAIN
-            # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_RUNTIME_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_RUNTIME_MAIN
-            curl --request POST https://api.rollbar.com/api/1/deploy/ -F access_token=$ROLLBAR_TOKEN -F environment=$GOOGLE_STORAGE_BUCKET -F revision=$CIRCLE_SHA1 -F local_username=CircleCI
+      # - run:
+      #     name: 'Upload SourceMaps, Send Deploy Notification'
+      #     command: |
+      #       # export FILE_1=$(find ./build/static/js -type f -name "2.*.js" -exec basename {} \;)
+      #       # export FILE_MAIN=$(find ./build/static/js -type f -name "main.*.js" -exec basename {} \;)
+      #       # export FILE_RUNTIME_MAIN=$(find ./build/static/js -type f -name "runtime~main.*.js" -exec basename {} \;)
+      #       # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_1.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_1
+      #       # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_MAIN
+      #       # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_RUNTIME_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_RUNTIME_MAIN
+      #       curl --request POST https://api.rollbar.com/api/1/deploy/ -F access_token=$ROLLBAR_TOKEN -F environment=$GOOGLE_STORAGE_BUCKET -F revision=$CIRCLE_SHA1 -F local_username=CircleCI
       # Persist :+1:
       - persist_to_workspace:
           root: ~/repo
           paths:
-            - platform/app/dist
-            - Dockerfile
-            - version.txt
-            - commit.txt
-            - version.json
+            - platform/viewer/dist
+            - netlify.toml
+            - .netlify
 
-  BUILD_PACKAGES_QUICK:
-    <<: *defaults
-    resource_class: large
+  DEPLOY_TO_DEV:
+    docker:
+      - image: circleci/node:14.15.0
+        environment:
+          TERM: xterm
+          NETLIFY_SITE_ID: 32708787-c9b0-4634-b50f-7ca41952da77
+    working_directory: ~/repo
     steps:
-      - install_bun
-      # Checkout code and ALL Git Tags
-      - checkout
       - attach_workspace:
           at: ~/repo
-      # SECURITY AUDIT
+      - run: cd .netlify && npm install
       - run:
-          name: 'Security Audit - High Risk Vulnerabilities'
-          command: |
-            echo "🔍 Running bun audit for security vulnerabilities..."
-            echo "Checking for HIGH-RISK vulnerabilities..."
+          cp .netlify/deploy-workflow/_redirects platform/viewer/dist/_redirects
+      - run: cd .netlify && npm run deploy
 
-            # Define ignored vulnerabilities with comments
-            IGNORED_VULNS=(
-              "GHSA-5j98-mcp5-4vw2"  # CVE-2025-64756 - glob is not used on the command line
-              "GHSA-8qq5-rm4j-mr97"  # CVE-2026-23745 - limited to build/dev environments
-              "GHSA-r6q2-hw4h-h46w"  # CVE-2026-23950 - limited to build/dev environments
-              "GHSA-34x7-hfp2-rc4v"  # CVE-2026-24842 - limited to build/dev environments
-            )
-
-            # Build ignore flags
-            IGNORE_FLAGS=""
-            for vuln in "${IGNORED_VULNS[@]}"; do
-              IGNORE_FLAGS="$IGNORE_FLAGS --ignore=$vuln"
-            done
-
-            if bun audit $IGNORE_FLAGS --audit-level high; then
-              echo "✅ No high-risk vulnerabilities found"
-              echo "🎉 Security audit passed!"
-            else
-              echo ""
-              echo "❌ HIGH-RISK VULNERABILITIES DETECTED!"
-              echo "======================================"
-              echo ""
-              echo "🔧 To fix these issues:"
-              echo "  1. Run: bun audit"
-              echo "  2. Review the vulnerability details"
-              echo "  3. Update affected packages to secure versions"
-              echo "  4. Test your changes"
-              echo "  5. Re-run: bun audit --audit-level high"
-              echo ""
-              echo "📋 Full audit report:"
-
-              bun audit $IGNORE_FLAGS --audit-level low || true
-
-              echo ""
-              echo "❌ This build cannot proceed until high-risk vulnerabilities are resolved."
-              exit 1
-            fi
+  DEPLOY_TO_STAGING:
+    docker:
+      - image: circleci/node:14.15.0
+        environment:
+          TERM: xterm
+          NETLIFY_SITE_ID: c7502ae3-b150-493c-8422-05701e44a969
+    working_directory: ~/repo
+    steps:
+      - attach_workspace:
+          at: ~/repo
+      - run: cd .netlify && npm install
       - run:
-          name: Install Dependencies
-          command: bun install --frozen-lockfile
-      - run:
-          name: Avoid hosts unknown for github
-          command: |
-            rm -rf ~/.ssh
-            mkdir ~/.ssh/
-            echo -e "Host github.com\n\tStrictHostKeyChecking no\n" > ~/.ssh/config
-            git config --global user.email "danny.ri.brown+ohif-bot@gmail.com"
-            git config --global user.name "ohif-bot"
-      - run:
-          name: Authenticate with NPM registry
-          command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
-      - run:
-          name: build half of the packages (to avoid out of memory in circleci)
-          command: |
-            bun run build:package-all
-      - run:
-          name: build the other half of the packages
-          command: |
-            bun run build:package-all-1
+          cp .netlify/deploy-workflow/_redirects platform/viewer/dist/_redirects
+      - run: cd .netlify && npm run deploy
 
+  DEPLOY_TO_PRODUCTION:
+    docker:
+      - image: circleci/node:14.15.0
+        environment:
+          TERM: xterm
+          NETLIFY_SITE_ID: 79c4a5da-5c95-4dc9-84f7-45fd9dfe21b0
+    working_directory: ~/repo
+    steps:
+      - attach_workspace:
+          at: ~/repo
+      - run: cd .netlify && npm install
+      - run:
+          cp .netlify/deploy-workflow/_redirects platform/viewer/dist/_redirects
+      - run: cd .netlify && npm run deploy
+
+  ###
+  # Workflow: RELEASE
+  ###
   NPM_PUBLISH:
     <<: *defaults
-    resource_class: large
     steps:
-      - install_bun
+      - run: yarn -v
       # Checkout code and ALL Git Tags
-      - checkout
-      - attach_workspace:
-          at: ~/repo
+      - checkout:
+          post:
+            - git fetch --all
+      # Use increasingly general patterns to restore cache
+      # - restore_cache:
+      #     name: Restore Yarn and Cypress Package Cache
+      #     keys:
+      #       - yarn-packages-{{ checksum "yarn.lock" }}
+      #       - yarn-packages-
       - run:
           name: Install Dependencies
-          command: bun install --no-save
+          command: yarn install --frozen-lockfile
+      - save_cache:
+          name: Save Yarn Package Cache
+          paths:
+            - ~/.cache/yarn
+          key: yarn-packages-{{ checksum "yarn.lock" }}
       - run:
           name: Avoid hosts unknown for github
           command: |
@@ -201,333 +259,250 @@ jobs:
             git config --global user.name "ohif-bot"
       - run:
           name: Authenticate with NPM registry
-          command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
-      - run:
-          name: build half of the packages (to avoid out of memory in circleci)
-          command: |
-            bun run build:package-all
-      - run:
-          name: build the other half of the packages
-          command: |
-            bun run build:package-all-1
-      - run:
-          name: increase min time out
-          command: |
-            npm config set fetch-retry-mintimeout 20000
-      - run:
-          name: increase max time out
-          command: |
-            npm config set fetch-retry-maxtimeout 120000
-      - run:
-          name: publish package versions
-          command: |
-            bun ./publish-version.mjs
-      - run:
-          name: Again set the NPM registry (was deleted in the version script)
-          command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
-      - run:
-          name: publish package dist
-          command: |
-            bun ./publish-package.mjs
+          command:
+            echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
+      - run: npx lerna version
+      - run: npx lerna publish from-package
       - persist_to_workspace:
           root: ~/repo
-          paths:
-            - .
+          paths: .
 
-  DOCKER_RELEASE_PUBLISH:
+  DOCS_PUBLISH:
+    docker:
+      # Gitbook fails due to graceful-fs updates above this node version :-(
+      - image: circleci/node:12.9.1
+        environment:
+          TERM: xterm # Enable colors in term
+    working_directory: ~/repo
+    steps:
+      - checkout
+      - run:
+          name: Avoid hosts unknown for github
+          command: |
+            rm -rf ~/.ssh
+            mkdir ~/.ssh/
+            echo -e "Host github.com\n\tStrictHostKeyChecking no\n" > ~/.ssh/config
+            git config --global user.email "danny.ri.brown+ohif-bot@gmail.com"
+            git config --global user.name "ohif-bot"
+      - run: yarn global add gitbook-cli gh-pages
+      - run: chmod +x ~/repo/.circleci/build-and-publish-docs.sh
+      - run: ~/repo/.circleci/build-and-publish-docs.sh
+
+  DOCKER_MASTER_PUBLISH:
     <<: *defaults
-    resource_class: large
     steps:
       - attach_workspace:
           at: ~/repo
       - setup_remote_docker:
+          version: 19.03.13
           docker_layer_caching: false
       - run:
-          name: Build Docker image for amd64
+          name: Build and push Docker image
           command: |
             # This file will exist if a new version was published by
-            # our command in the previous job.
-            if [[ ! -e version.txt ]]; then
+            # our command in the previous job. Created in npm postpublish hook
+            # in the `platform/viewer` project.
+            if [[ ! -e platform/viewer/success_version.txt ]]; then
               exit 0
             else
               # Remove npm config
               rm -f ./.npmrc
               # Set our version number using vars
-              export IMAGE_VERSION=$(cat version.txt)
-              export IMAGE_VERSION_FULL=v$IMAGE_VERSION
+              export IMAGE_VERSION=$(cat platform/viewer/success_version.txt)
+              export IMAGE_VERSION_FULL=v$IMAGE_VERSION.${CIRCLE_BUILD_NUM}
               echo $IMAGE_VERSION
               echo $IMAGE_VERSION_FULL
-              # Build our amd64 image, auth, and push
-              docker build --platform linux/amd64 --tag ohif/app:$IMAGE_VERSION_FULL-amd64 --tag ohif/app:latest-amd64 .
+              # Build our image, auth, and push
+              docker build --tag ohif/$IMAGE_NAME:$IMAGE_VERSION_FULL --tag ohif/$IMAGE_NAME:latest .
               echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
-              docker push ohif/app:$IMAGE_VERSION_FULL-amd64
-              docker push ohif/app:latest-amd64
-            fi
-      - persist_to_workspace:
-          root: ~/repo
-          paths:
-            - .
-
-  DOCKER_RELEASE_PUBLISH_ARM:
-    <<: *defaults
-    resource_class: arm.large
-    steps:
-      - attach_workspace:
-          at: ~/repo
-      - setup_remote_docker:
-          docker_layer_caching: false
-      - run:
-          name: Build Docker image for arm64 (Release)
-          command: |
-            # This file will exist if a new version was published by
-            # our command in the previous job.
-            if [[ ! -e version.txt ]]; then
-              exit 0
-            else
-              # Remove npm config
-              rm -f ./.npmrc
-              # Set our version number using vars
-              export IMAGE_VERSION=$(cat version.txt)
-              export IMAGE_VERSION_FULL=v$IMAGE_VERSION
-              echo $IMAGE_VERSION
-              echo $IMAGE_VERSION_FULL
-              # Build our arm64 image, auth, and push
-              docker build --platform linux/arm64 --tag ohif/app:$IMAGE_VERSION_FULL-arm64 --tag ohif/app:latest-arm64 .
-              echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
-              docker push ohif/app:$IMAGE_VERSION_FULL-arm64
-              docker push ohif/app:latest-arm64
-            fi
-      - persist_to_workspace:
-          root: ~/repo
-          paths:
-            - .
-
-  DOCKER_BETA_PUBLISH:
-    <<: *defaults
-    resource_class: large
-    steps:
-      - attach_workspace:
-          at: ~/repo
-      - setup_remote_docker:
-          docker_layer_caching: false
-      - run:
-          name: Build Docker image for amd64 (Beta)
-          command: |
-            echo $(ls -l)
-
-            # This file will exist if a new version was published by
-            # our command in the previous job.
-            if [[ ! -e version.txt ]]; then
-              echo "don't have version txt"
-              exit 0
-            else
-              echo "Building and pushing Docker image from the master branch (beta releases)"
-              rm -f ./.npmrc
-
-              # Set our version number using vars
-              export IMAGE_VERSION=$(cat version.txt)
-              export IMAGE_VERSION_FULL=v$IMAGE_VERSION
-              echo $IMAGE_VERSION
-              echo $IMAGE_VERSION_FULL
-              # Build our amd64 image, auth, and push
-              docker build --platform linux/amd64 --tag ohif/app:$IMAGE_VERSION_FULL-amd64 --tag ohif/app:latest-beta-amd64 .
-              echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
-              docker push ohif/app:$IMAGE_VERSION_FULL-amd64
-              docker push ohif/app:latest-beta-amd64
-            fi
-
-  DOCKER_BETA_PUBLISH_ARM:
-    <<: *defaults
-    resource_class: arm.large
-    steps:
-      - attach_workspace:
-          at: ~/repo
-      - setup_remote_docker:
-          docker_layer_caching: false
-      - run:
-          name: Build Docker image for arm64 (Beta)
-          command: |
-            echo $(ls -l)
-
-            # This file will exist if a new version was published by
-            # our command in the previous job.
-            if [[ ! -e version.txt ]]; then
-              echo "don't have version txt"
-              exit 0
-            else
-              echo "Building and pushing ARM64 Docker image from the master branch (beta releases)"
-              rm -f ./.npmrc
-              # Set our version number using vars
-              export IMAGE_VERSION=$(cat version.txt)
-              export IMAGE_VERSION_FULL=v$IMAGE_VERSION
-              echo $IMAGE_VERSION
-              echo $IMAGE_VERSION_FULL
-              # Build our arm64 image, auth, and push
-              docker build --platform linux/arm64 --tag ohif/app:$IMAGE_VERSION_FULL-arm64 --tag ohif/app:latest-beta-arm64 .
-              echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
-              docker push ohif/app:$IMAGE_VERSION_FULL-arm64
-              docker push ohif/app:latest-beta-arm64
-            fi
-
-  CYPRESS:
-    <<: *defaults
-    resource_class: large
-    parallelism: 8
-    steps:
-      - run:
-          name: Install System Dependencies
-          command: |
-            sudo apt-get update
-            sudo apt-get install -y xvfb libgtk2.0-0 libgtk-3-0 libgbm-dev libnotify-dev libgconf-2-4 libnss3 libxss1 libasound2 libxtst6
-      - run:
-          name: Start Xvfb
-          command: Xvfb :99 -screen 0 1920x1080x24 &
-          background: true
-      - run:
-          name: Export Display Variable
-          command: export DISPLAY=:99
-      - cypress/install:
-          install-command: yarn install --frozen-lockfile --no-save
-      - cypress/run-tests:
-          cypress-command: |
-            npx wait-on@latest http://localhost:3000 && cd platform/app && npx cypress run --record --parallel
-          start-command: yarn run test:data && yarn run test:e2e:serve
-
-  DOCKER_MULTIARCH_MANIFEST:
-    <<: *defaults
-    resource_class: large
-    steps:
-      - attach_workspace:
-          at: ~/repo
-      - setup_remote_docker:
-          docker_layer_caching: false
-      - run:
-          name: Create and push multi-architecture manifest (Release)
-          command: |
-            # This file will exist if a new version was published by
-            # our command in the previous job.
-            if [[ ! -e version.txt ]]; then
-              exit 0
-            else
-              echo "Building and pushing multi-architecture manifest from the master branch (release releases)"
-              rm -f ./.npmrc
-              # Set our version number using vars
-              export IMAGE_VERSION=$(cat version.txt)
-              export IMAGE_VERSION_FULL=v$IMAGE_VERSION
-              echo $IMAGE_VERSION
-              echo $IMAGE_VERSION_FULL
-              echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
-
-              # Create and push manifest for specific version
-              docker manifest create ohif/app:$IMAGE_VERSION_FULL \
-                --amend ohif/app:$IMAGE_VERSION_FULL-amd64 \
-                --amend ohif/app:$IMAGE_VERSION_FULL-arm64
-              docker manifest push ohif/app:$IMAGE_VERSION_FULL
-
-              # Create and push manifest for "latest" tag
-              docker manifest create ohif/app:latest \
-                --amend ohif/app:latest-amd64 \
-                --amend ohif/app:latest-arm64
-              docker manifest push ohif/app:latest
-            fi
-
-  DOCKER_BETA_MULTIARCH_MANIFEST:
-    <<: *defaults
-    resource_class: large
-    steps:
-      - attach_workspace:
-          at: ~/repo
-      - setup_remote_docker:
-          docker_layer_caching: false
-      - run:
-          name: Create and push multi-architecture manifest (Beta)
-          command: |
-            echo $(ls -l)
-
-            # This file will exist if a new version was published by
-            # our command in the previous job.
-            if [[ ! -e version.txt ]]; then
-              exit 0
-            else
-              echo "Building and pushing multi-architecture manifest from the master branch (beta releases)"
-              rm -f ./.npmrc
-              # Set our version number using vars
-              export IMAGE_VERSION=$(cat version.txt)
-              export IMAGE_VERSION_FULL=v$IMAGE_VERSION
-              echo $IMAGE_VERSION
-              echo $IMAGE_VERSION_FULL
-              echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
-
-              # Create and push manifest for specific beta version
-              docker manifest create ohif/app:$IMAGE_VERSION_FULL \
-                --amend ohif/app:$IMAGE_VERSION_FULL-amd64 \
-                --amend ohif/app:$IMAGE_VERSION_FULL-arm64
-              docker manifest push ohif/app:$IMAGE_VERSION_FULL
-
-              # Create and push manifest for "latest-beta" tag
-              docker manifest create ohif/app:latest-beta \
-                --amend ohif/app:latest-beta-amd64 \
-                --amend ohif/app:latest-beta-arm64
-              docker manifest push ohif/app:latest-beta
+              docker push ohif/$IMAGE_NAME:$IMAGE_VERSION_FULL
+              docker push ohif/$IMAGE_NAME:latest
             fi
 
 workflows:
+  version: 2
+
   PR_CHECKS:
     jobs:
-      - BUILD_PACKAGES_QUICK:
+      - UNIT_TESTS:
           filters:
             branches:
-              ignore: master
-      - UNIT_TESTS
-      - CYPRESS:
-          name: 'Cypress Tests'
-          context: cypress
+              ignore:
+                - master
+                - feature/*
+                - hotfix/*
+      # E2E: PWA
+      - cypress/run:
+          name: 'E2E: PWA'
+          executor: chrome-and-pacs
+          browser: chrome
+          pre-steps:
+            - run: |
+                # Clear yarn cache; update to latest
+                rm -rf ~/.yarn
+                npm i -g yarn
+                yarn -v
+          yarn: true
+          record: true
+          store_artifacts: true
+          working_directory: platform/viewer
+          build:
+            git submodule update --init && npx cross-env QUICK_BUILD=true
+            APP_CONFIG=config/e2e.js yarn run build
+          start: yarn run test:e2e:serve
+          spec: 'cypress/integration/common/**/*,cypress/integration/pwa/**/*'
+          wait-on: 'http://localhost:3000'
+          cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
+          no-workspace: true # Don't persist workspace
+          post-steps:
+            - store_artifacts:
+                path: platform/viewer/cypress/screenshots
+            - store_artifacts:
+                path: platform/viewer/cypress/videos
+            - store_test_results:
+                path: platform/viewer/cypress/results
+          requires:
+            - UNIT_TESTS
+      # E2E: script-tag
+      - cypress/run:
+          name: 'E2E: Script Tag'
+          executor: chrome-and-pacs
+          browser: chrome
+          pre-steps:
+            - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v' # Use yarn latest
+          yarn: true
+          record: true
+          store_artifacts: true
+          working_directory: platform/viewer
+          build:
+            git submodule update --init && npx cross-env QUICK_BUILD=true
+            APP_CONFIG=config/e2e.js yarn run build:package
+          start: yarn run test:e2e:serve
+          spec: 'cypress/integration/common/**/*,cypress/integration/script-tag/**/*'
+          wait-on: 'http://localhost:3000'
+          cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
+          no-workspace: true # Don't persist workspace
+          post-steps:
+            - store_artifacts:
+                path: platform/viewer/cypress/screenshots
+            - store_artifacts:
+                path: platform/viewer/cypress/videos
+            - store_test_results:
+                path: platform/viewer/cypress/results
+          requires:
+            - UNIT_TESTS
 
-  # viewer-dev.ohif.org
-  DEPLOY_MASTER:
+  PR_OPTIONAL_VISUAL_TESTS:
+    jobs:
+      - AWAIT_APPROVAL:
+          type: approval
+      # Update hub.docker.org
+      - cypress/run:
+          name: 'Generate Percy Snapshots'
+          executor: chrome-and-pacs
+          browser: chrome
+          pre-steps:
+            - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
+                add wait-on' # Use yarn latest
+          yarn: true
+          store_artifacts: false
+          working_directory: platform/viewer
+          build:
+            git submodule update --init && npx cross-env QUICK_BUILD=true
+            APP_CONFIG=config/e2e.js yarn run build
+          # start server --> verify running --> percy + chrome + cypress
+          command: yarn run test:e2e:dist
+          cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
+          no-workspace: true # Don't persist workspace
+          post-steps:
+            - store_artifacts:
+                path: platform/viewer/cypress/screenshots
+            - store_artifacts:
+                path: platform/viewer/cypress/videos
+          requires:
+            - AWAIT_APPROVAL
+
+  PR_OPTIONAL_DOCKER_PUBLISH:
+    jobs:
+      # https://circleci.com/docs/2.0/workflows/#holding-a-workflow-for-a-manual-approval
+      - AWAIT_APPROVAL:
+          type: approval
+      # Update hub.docker.org
+      - DOCKER_PR_PUBLISH:
+          context: Docker Hub
+          requires:
+            - AWAIT_APPROVAL
+
+  ###
+  # Our workflow for building, deploying, and promoting builds across our
+  # development, staging, and production environments.
+  ###
+  DEPLOY:
     jobs:
       - BUILD:
           filters:
             branches:
               only: master
-      # - HOLD_FOR_APPROVAL:
-      #     type: approval
-      #     requires:
-      #       - BUILD
-      - NPM_PUBLISH:
+      - DEPLOY_TO_DEV:
           requires:
-            # - HOLD_FOR_APPROVAL
             - BUILD
-      - DOCKER_BETA_PUBLISH:
-          requires:
-            - NPM_PUBLISH
-      - DOCKER_BETA_PUBLISH_ARM:
-          requires:
-            - DOCKER_BETA_PUBLISH
-      - DOCKER_BETA_MULTIARCH_MANIFEST:
-          requires:
-            - DOCKER_BETA_PUBLISH_ARM
-
-  # viewer.ohif.org
-  DEPLOY_RELEASE:
-    jobs:
-      - BUILD:
-          filters:
-            branches:
-              only: /^release\/.*/
-      - HOLD_FOR_APPROVAL:
+      - PROMOTE_TO_STAGING:
           type: approval
           requires:
-            - BUILD
-      - NPM_PUBLISH:
+            - DEPLOY_TO_DEV
+      - DEPLOY_TO_STAGING:
           requires:
-            - HOLD_FOR_APPROVAL
-      - DOCKER_RELEASE_PUBLISH:
+            - PROMOTE_TO_STAGING
+      - PROMOTE_TO_PRODUCTION:
+          type: approval
+          requires:
+            - DEPLOY_TO_STAGING
+      - DEPLOY_TO_PRODUCTION:
+          requires:
+            - PROMOTE_TO_PRODUCTION
+  ###
+  # Unit and E2E tests have already run for PR_CHECKS
+  # Re-running should not gain us any confidence here
+  ###
+  RELEASE:
+    jobs:
+      - NPM_PUBLISH:
+          filters:
+            branches:
+              only: master
+      - DOCS_PUBLISH:
+          filters:
+            branches:
+              only: master
+      # Update base branch snapshots
+      # and record a Cypress dashboard test run
+      - cypress/run:
+          name: 'Generate Percy Snapshots'
+          executor: chrome-and-pacs
+          browser: chrome
+          pre-steps:
+            - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
+                add wait-on' # Use yarn latest
+          yarn: true
+          store_artifacts: false
+          working_directory: platform/viewer
+          build:
+            git submodule update --init && npx cross-env QUICK_BUILD=true
+            APP_CONFIG=config/e2e.js yarn run build
+          # start server --> verify running --> percy + chrome + cypress
+          command: yarn run test:e2e:dist
+          cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
+          no-workspace: true # Don't persist workspace
+          post-steps:
+            - store_artifacts:
+                path: platform/viewer/cypress/screenshots
+            - store_artifacts:
+                path: platform/viewer/cypress/videos
+            - store_test_results:
+                path: platform/viewer/cypress/results
+          filters:
+            branches:
+              only: master
+      - DOCKER_MASTER_PUBLISH:
           requires:
             - NPM_PUBLISH
-      - DOCKER_RELEASE_PUBLISH_ARM:
-          requires:
-            - DOCKER_RELEASE_PUBLISH
-      - DOCKER_MULTIARCH_MANIFEST:
-          requires:
-            - DOCKER_RELEASE_PUBLISH_ARM

.codecov.yml

@@ -0,0 +1,25 @@
+# ABOUT:
+# https://docs.codecov.io/docs/codecov-yaml
+#
+#
+# COMMIT STATUS:
+# https://docs.codecov.io/docs/commit-status
+coverage:
+  status:
+    project:
+      default:
+        threshold: 0.5%
+      core:
+        flags: core
+        threshold: 0.5%
+      viewer:
+        flags: viewer
+        threshold: 0.5%
+    patch: off
+flags:
+  core:
+    paths:
+      - platform/core
+  viewer:
+    paths:
+      - platform/viewer

.codespellrc

@@ -1,6 +0,0 @@
-[codespell]
-skip = .git,*.pdf,*.svg,yarn.lock,*.min.js,locales
-# ignore words ending with … and some camelcased variables and names
-ignore-regex = \b\S+…\S*|\b(doubleClick|afterAll|PostgresSQL)\b|\bWee, L\.|.*te.*Telugu.*
-# some odd variables
-ignore-words-list = datea,ser,childrens

.docker/Nginx-Orthanc/config/nginx.conf

@@ -0,0 +1,48 @@
+worker_processes 1;
+
+events { worker_connections 1024; }
+
+http {
+
+    upstream orthanc-server {
+        server orthanc:8042;
+    }
+
+    server {
+        listen [::]:80 default_server;
+        listen 80;
+
+        # CORS Magic
+        add_header 'Access-Control-Allow-Origin' '*';
+        add_header 'Access-Control-Allow_Credentials' 'true';
+        add_header 'Access-Control-Allow-Headers' 'Authorization,Accept,Origin,DNT,X-CustomHeader,Keep-Alive,User-Agent,X-Requested-With,If-Modified-Since,Cache-Control,Content-Type,Content-Range,Range';
+        add_header 'Access-Control-Allow-Methods' 'GET,POST,OPTIONS,PUT,DELETE,PATCH';
+
+        location / {
+
+            if ($request_method = 'OPTIONS') {
+                add_header 'Access-Control-Allow-Origin' '*';
+                add_header 'Access-Control-Allow_Credentials' 'true';
+                add_header 'Access-Control-Allow-Headers' 'Authorization,Accept,Origin,DNT,X-CustomHeader,Keep-Alive,User-Agent,X-Requested-With,If-Modified-Since,Cache-Control,Content-Type,Content-Range,Range';
+                add_header 'Access-Control-Allow-Methods' 'GET,POST,OPTIONS,PUT,DELETE,PATCH';
+                add_header 'Access-Control-Max-Age' 1728000;
+                add_header 'Content-Type' 'text/plain charset=UTF-8';
+                add_header 'Content-Length' 0;
+                return 204;
+            }
+
+            proxy_pass         http://orthanc:8042;
+            proxy_redirect     off;
+            proxy_set_header   Host $host;
+            proxy_set_header   X-Real-IP $remote_addr;
+            proxy_set_header   X-Forwarded-For $proxy_add_x_forwarded_for;
+            proxy_set_header   X-Forwarded-Host $server_name;
+
+            # CORS Magic
+            add_header 'Access-Control-Allow-Origin' '*';
+            add_header 'Access-Control-Allow_Credentials' 'true';
+            add_header 'Access-Control-Allow-Headers' 'Authorization,Accept,Origin,DNT,X-CustomHeader,Keep-Alive,User-Agent,X-Requested-With,If-Modified-Since,Cache-Control,Content-Type,Content-Range,Range';
+            add_header 'Access-Control-Allow-Methods' 'GET,POST,OPTIONS,PUT,DELETE,PATCH';
+        }
+    }
+}

.docker/Nginx-Orthanc/docker-compose.yml

@@ -0,0 +1,15 @@
+version: '3.5'
+
+services:
+  orthanc:
+    image: jodogne/orthanc-plugins:1.5.6
+    hostname: orthanc
+    volumes:
+      # Config
+      - ./config/orthanc.json:/etc/orthanc/orthanc.json:ro
+      # Persist data
+      - ./volumes/orthanc-db/:/var/lib/orthanc/db/
+    ports:
+      - '4242:4242' # DICOM
+      - '8042:8042' # Web
+    restart: unless-stopped

.docker/Nginx-Orthanc/volumes/orthanc-db/.gitignore

@@ -0,0 +1,2 @@
+*
+!.gitignore

.docker/README.md

@@ -1,43 +0,0 @@
-# Docker compose files
-
-This folder contains docker-compose files used to spin up OHIF-Viewer with
-different options such as locally or with any PAS you desire to
-
-## Public Server
-
-## Local Orthanc
-
-### Build
-
-`$ docker-compose -f docker-compose-orthanc.yml build`
-
-### Run
-
-Starts containers and leaves them running in the background.
-
-`$ docker-compose -f docker-compose-orthanc.yml up -d`
-
-then, access the application at [http://localhost](http://localhost)
-
-**remember that you have to access orthanc application and include your studies
-there**
-
-## Local Dcm4chee
-
-#### build
-
-`$ docker-compose -f docker-compose-dcm4chee.yml build`
-
-#### run
-
-`$ docker-compose -f docker-compose-dcm4chee.yml up -d`
-
-then, access the application at [http://localhost](http://localhost)
-
-**remember that you have to access dcm4chee application and include your studies
-there** You can use the following command to import your studies into dcm4che
-
-`$ docker run -v {YOUR_STUDY_FOLDER}:/tmp --rm --network=docker_dcm4che_default dcm4che/dcm4che-tools:5.14.0 storescu -cDCM4CHEE@arc:11112 /tmp`
-
-**make sure that your Docker network name is docker_dcm4chee_default or change
-it to the right one**

.docker/Viewer-v2.x/default.conf

@@ -0,0 +1,12 @@
+server {
+  listen 80;
+  location / {
+    root   /usr/share/nginx/html;
+    index  index.html index.htm;
+    try_files $uri $uri/ /index.html;
+  }
+  error_page   500 502 503 504  /50x.html;
+  location = /50x.html {
+    root   /usr/share/nginx/html;
+  }
+}

.docker/Viewer-v2.x/entrypoint.sh

@@ -0,0 +1,39 @@
+#!/bin/bash
+
+if [ -n "$CLIENT_ID" ] || [ -n "$HEALTHCARE_API_ENDPOINT" ]
+  then
+    # If CLIENT_ID is specified, use the google.js configuration with the modified ID
+    if [ -n "$CLIENT_ID" ]
+      then
+  	    echo "Google Cloud Healthcare \$CLIENT_ID has been provided: "
+  	    echo "$CLIENT_ID"
+  	    echo "Updating config..."
+
+  	    # - Use SED to replace the CLIENT_ID that is currently in google.js
+	      sed -i -e "s/YOURCLIENTID.apps.googleusercontent.com/$CLIENT_ID/g" /usr/share/nginx/html/google.js
+	  fi
+
+    # If HEALTHCARE_API_ENDPOINT is specified, use the google.js configuration with the modified endpoint
+    if [ -n "$HEALTHCARE_API_ENDPOINT" ]
+      then
+        echo "Google Cloud Healthcare \$HEALTHCARE_API_ENDPOINT has been provided: "
+        echo "$HEALTHCARE_API_ENDPOINT"
+        echo "Updating config..."
+
+        # - Use SED to replace the HEALTHCARE_API_ENDPOINT that is currently in google.js
+        sed -i -e "s+https://healthcare.googleapis.com/v1beta1+$HEALTHCARE_API_ENDPOINT+g" /usr/share/nginx/html/google.js
+    fi
+
+	  # - Copy google.js to overwrite app-config.js
+	  cp /usr/share/nginx/html/google.js /usr/share/nginx/html/app-config.js
+fi
+
+if [ -n "${PORT}" ]
+  then
+    echo "Changing port to ${PORT}..."
+    sed -i -e "s/listen 80/listen ${PORT}/g" /etc/nginx/conf.d/default.conf
+fi
+
+echo "Starting Nginx to serve the OHIF Viewer..."
+
+exec "$@"

.docker/Viewer-v3.x/default.conf.template

@@ -1,21 +0,0 @@
-server {
-  gzip_static  always;
-  gzip_proxied expired no-cache no-store private auth;
-  gunzip       on;
-  listen ${PORT} default_server;
-  listen [::]:${PORT} default_server;
-  location / {
-    root   /usr/share/nginx/html;
-    index  index.html index.htm;
-    try_files $uri $uri/ ${PUBLIC_URL}index.html;
-    add_header Cross-Origin-Resource-Policy same-origin;
-    proxy_set_header Host $host;
-    proxy_set_header X-Real-IP $remote_addr;
-    proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
-    proxy_set_header X-Forwarded-Proto $http_x_forwarded_proto;
-  }
-  error_page   500 502 503 504  /50x.html;
-  location = /50x.html {
-    root   /usr/share/nginx/html;
-  }
-}

.docker/Viewer-v3.x/default.ssl.conf.template

@@ -1,20 +0,0 @@
-server {
-  listen ${SSL_PORT} ssl http2 default_server;
-  listen [::]:${SSL_PORT} ssl http2 default_server;
-  ssl_certificate /etc/ssl/certs/ssl-certificate.crt;
-  ssl_certificate_key /etc/ssl/private/ssl-private-key.key;
-  location / {
-    root   /usr/share/nginx/html;
-    index  index.html index.htm;
-    try_files $uri $uri/ /index.html;
-    add_header Cross-Origin-Resource-Policy same-origin;
-    proxy_set_header Host $host;
-    proxy_set_header X-Real-IP $remote_addr;
-    proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
-    proxy_set_header X-Forwarded-Proto $http_x_forwarded_proto;
-  }
-  error_page   500 502 503 504  /50x.html;
-  location = /50x.html {
-    root   /usr/share/nginx/html;
-  }
-}

.docker/Viewer-v3.x/entrypoint.sh

@@ -1,63 +0,0 @@
-#!/bin/sh
-
-if [ -n "$SSL_PORT" ]
-  then
-    envsubst '${SSL_PORT}:${PORT}' < /usr/src/default.ssl.conf.template | envsubst '${PUBLIC_URL}' > /etc/nginx/conf.d/default.conf
-  else
-    envsubst '${PORT}:${PUBLIC_URL}' < /usr/src/default.conf.template  > /etc/nginx/conf.d/default.conf
-fi
-
-if [ -n "$APP_CONFIG" ]; then
-  echo "$APP_CONFIG" > /usr/share/nginx/html${PUBLIC_URL}app-config.js
-  echo "Using custom APP_CONFIG environment variable"
-else
-  echo "Not using custom APP_CONFIG"
-fi
-
-if [ -f /usr/share/nginx/html${PUBLIC_URL}app-config.js ]; then
-  if [ -s /usr/share/nginx/html${PUBLIC_URL}app-config.js ]; then
-    echo "Detected non-empty app-config.js. Ensuring .gz file is updated..."
-    rm -f /usr/share/nginx/html${PUBLIC_URL}app-config.js.gz
-    gzip /usr/share/nginx/html${PUBLIC_URL}app-config.js
-    touch /usr/share/nginx/html${PUBLIC_URL}app-config.js
-    echo "Compressed app-config.js to app-config.js.gz"
-  else
-    echo "app-config.js is empty. Skipping compression."
-  fi
-else
-  echo "No app-config.js file found. Skipping compression."
-fi
-
-
-
-if [ -n "$CLIENT_ID" ] || [ -n "$HEALTHCARE_API_ENDPOINT" ]
-  then
-    # If CLIENT_ID is specified, use the google.js configuration with the modified ID
-    if [ -n "$CLIENT_ID" ]
-      then
-  	    echo "Google Cloud Healthcare \$CLIENT_ID has been provided: "
-  	    echo "$CLIENT_ID"
-  	    echo "Updating config..."
-
-  	    # - Use SED to replace the CLIENT_ID that is currently in google.js
-	      sed -i -e "s/YOURCLIENTID.apps.googleusercontent.com/$CLIENT_ID/g" /usr/share/nginx/html/google.js
-	  fi
-
-    # If HEALTHCARE_API_ENDPOINT is specified, use the google.js configuration with the modified endpoint
-    if [ -n "$HEALTHCARE_API_ENDPOINT" ]
-      then
-        echo "Google Cloud Healthcare \$HEALTHCARE_API_ENDPOINT has been provided: "
-        echo "$HEALTHCARE_API_ENDPOINT"
-        echo "Updating config..."
-
-        # - Use SED to replace the HEALTHCARE_API_ENDPOINT that is currently in google.js
-        sed -i -e "s+https://healthcare.googleapis.com/v1+$HEALTHCARE_API_ENDPOINT+g" /usr/share/nginx/html/google.js
-    fi
-
-	  # - Copy google.js to overwrite app-config.js
-	  cp /usr/share/nginx/html/google.js /usr/share/nginx/html/app-config.js
-fi
-
-echo "Starting Nginx to serve the OHIF Viewer on ${PUBLIC_URL}"
-
-exec "$@"

.docker/compressDist.sh

@@ -1,4 +0,0 @@
-find platform/app/dist -name "*.js" -exec gzip -9 "{}" \; -exec touch "{}" \;
-find platform/app/dist -name "*.map" -exec gzip -9 "{}" \; -exec touch "{}" \;
-find platform/app/dist -name "*.css" -exec gzip -9 "{}" \; -exec touch "{}" \;
-find platform/app/dist -name "*.svg" -exec gzip -9 "{}" \; -exec touch "{}" \;

.dockerignore

@@ -1,18 +1,12 @@
 # Reduces size of context and hides
 # files from Docker (can't COPY or ADD these)
 
-# Note that typically the Docker context for various OHIF containers is the
-# directory of this file (i.e. the root of the source). As such, this is
-# the .dockerignore file for ALL Docker containers that are built. For example,
-# the Docker containers built from the recipes in ./platform/app/.recipes will
-# have this file as their .dockerignore.
-
 # Output
-**/dist/
-**/build/
+dist/
+build/
 
 # Dependencies
-**/node_modules/
+node_modules/
 
 # Root
 README.md
@@ -33,5 +27,4 @@ dockerfile
 .scripts/
 .vscode/
 coverage/
-platform/docs/
-testdata/
+docs/

.env.example

@@ -0,0 +1 @@
+PERCY_TOKEN=<your token here>

.eslintignore

@@ -1,4 +0,0 @@
-config/**
-docs/**
-img/**
-node_modules

.eslintrc.json

@@ -1,13 +1,11 @@
 {
-  "plugins": ["@typescript-eslint", "import", "eslint-plugin-tsdoc", "prettier"],
   "extends": [
     "react-app",
     "eslint:recommended",
     "plugin:react/recommended",
-    "plugin:@typescript-eslint/recommended",
     "plugin:prettier/recommended"
   ],
-  "parser": "@typescript-eslint/parser",
+  "parser": "babel-eslint",
   "env": {
     "jest": true
   },
@@ -16,11 +14,6 @@
       "version": "detect"
     }
   },
-  "rules": {
-    // Enforce consistent brace style for all control statements for readability
-    "curly": "error",
-    "import/no-anonymous-default-export": "off"
-  },
   "globals": {
     "cy": true,
     "before": true,

.gitattributes

@@ -1,5 +0,0 @@
-# Set the default behavior,
-# in case people don't have core.autocrlf set.
-* text=auto
-# Declares that files will always have CRLF line ends
-*.sh text eol=lf

.github/.dependabot.yaml

@@ -1,19 +0,0 @@
-version: 2
-enable-beta-ecosystems: true
-updates:
-  - package-ecosystem: 'bun'
-    directory: '/'
-    schedule:
-      interval: 'daily'
-    labels: ['dependencies']
-    commit-message:
-      prefix: 'chore'
-      include: 'scope'
-  - package-ecosystem: 'npm'
-    directory: '/'
-    schedule:
-      interval: 'daily'
-    labels: ['dependencies']
-    commit-message:
-      prefix: 'chore'
-      include: 'scope'

.github/ISSUE_TEMPLATE/---bug-report.md

@@ -0,0 +1,33 @@
+---
+name: "\U0001F41B Bug report"
+about: Create a report to help us improve
+title: ''
+labels: 'Community: Report :bug:, Awaiting Reproduction, Triage :white_flag:'
+assignees: ''
+---
+
+> **Before Creating an issue**
+>
+> - Are you running the latest version?
+> - Are you reporting to the correct repository?
+> - Did you search existing issues?
+
+## Bug Report
+
+### Describe the Bug
+
+_A clear and concise description of what the bug is._
+
+### What steps can we follow to reproduce the bug?
+
+1. First step
+2. Second step
+3. ...
+
+```js
+Please use code blocks to show formatted errors or code snippets
+```
+
+> :warning: Reports we cannot reproduce are at risk of being marked stale and
+> closed. The more information you can provide, the more likely we are to look
+> into and address your issue.

.github/ISSUE_TEMPLATE/---feature-request.md

@@ -0,0 +1,25 @@
+---
+name: "\U0001F680 Feature request"
+about: Suggest an idea for this project
+title: ''
+labels: 'Community: Request :hand:, Triage :white_flag:'
+assignees: ''
+---
+
+> :hand: Many people requests features. Tell us why yours is important to the
+> community. How does it add value? Why _this feature_?
+>
+> Is your request very specific to your needs? Consider
+> [contributing it](https://docs.ohif.org/contributing.html) yourself! Or reach
+> out to a community member that offers
+> [consulting services](https://docs.ohif.org/help.html#paid--commercial).
+
+## Request
+
+**What feature or change would you like to see made?**
+
+...
+
+**Why should we prioritize this feature?**
+
+...

.github/ISSUE_TEMPLATE/bug-report.yml

@@ -1,85 +0,0 @@
-name: 'Bug report'
-description: Create a report to help us improve
-title: '[Bug] '
-labels: ['Community: Report :bug:', 'Awaiting Reproduction']
-
-body:
-  - type: markdown
-    attributes:
-      value: |
-        👋 Hello, and thank you for contributing to our project! Your support is greatly appreciated.
-
-        🔍 Before proceeding, please make sure to read our [Rules of Conduct](https://github.com/OHIF/Viewers/blob/master/CODE_OF_CONDUCT.md) and familiarize yourself with our [development process](https:/docs.ohif.org/development/our-process).
-
-        ❓ If you're here to seek general support or ask a question, we encourage you to visit our [community discussion board](https://community.ohif.org/)
-
-        🐞 For bug reports, please complete the following template in as much detail as possible. This will help us reproduce and address the issue efficiently.
-
-        🧪 Finally, ensure that you're using the latest version of the software and check if your issue has already been reported to avoid duplicates.
-
-  - type: textarea
-    id: bug_description
-    attributes:
-      label: Describe the Bug
-      description: 'A clear and concise description of what the bug is.'
-    validations:
-      required: true
-
-  - type: textarea
-    id: reproduction_steps
-    attributes:
-      label: Steps to Reproduce
-      description: 'Please describe the steps to reproduce the issue.'
-      placeholder: "1. First step\n2. Second step\n3. ..."
-    validations:
-      required: true
-
-  - type: textarea
-    id: current_behavior
-    attributes:
-      label: The current behavior
-      description:
-        'A clear and concise description of what happens instead of the expected behavior.'
-    validations:
-      required: true
-
-  - type: textarea
-    id: expected_behavior
-    attributes:
-      label: The expected behavior
-      description: 'A clear and concise description of what you expected to happen.'
-    validations:
-      required: true
-
-  - type: textarea
-    id: system_info
-    attributes:
-      label: 'System Information'
-      description: 'Please run the following command in your terminal and paste the output:'
-      placeholder: |
-        Run: npx envinfo --system --binaries --browsers
-        
-        Then paste the output here. It should look something like:
-        
-        System:
-          OS: Windows 10 10.0.19042
-          CPU: (8) x64 Intel(R) Core(TM) i7-9750H CPU @ 2.60GHz
-          Memory: 15.89 GB / 31.74 GB
-          Shell: 1.0.0 - C:\WINDOWS\System32\WindowsPowerShell\v1.0\powershell.exe
-        Binaries:
-          Node: 20.18.1 - C:\Program Files\nodejs\node.EXE
-          Yarn: 1.22.22 - C:\Users\user\AppData\Roaming\npm\yarn.CMD
-          npm: 10.8.2 - C:\Program Files\nodejs\npm.CMD
-        Browsers:
-          Chrome: 83.0.4103.116
-          Edge: Spartan (44.19041.1266.0), Chromium (83.0.478.58)
-          Firefox: 77.0.1
-    validations:
-      required: true
-
-  - type: markdown
-    attributes:
-      value: >
-        > :warning: Reports we cannot reproduce are at risk of being marked stale and > closed. The
-        more information you can provide, the more likely we are to look > into and address your
-        issue.

.github/ISSUE_TEMPLATE/feature-request.yml

@@ -1,34 +0,0 @@
-name: Feature request
-description: Create a feature request
-labels: ['Community: Request :hand:']
-title: '[Feature Request] '
-body:
-  - type: markdown
-    attributes:
-      value: |
-        👋 Hello and thank you for your interest in our project!
-
-        🔍 Before you proceed, please read our [Rules of Conduct](https://github.com/OHIF/Viewers/blob/master/CODE_OF_CONDUCT.md).
-
-        🚀 If your request is specific to your needs, consider contributing it yourself! Read our [contributing guides](https://docs.ohif.org/development/contributing) to get started.
-
-        🖊️ Please provide as much detail as possible for your feature request. Mock-up screenshots, workflow or logic flow diagrams are very helpful. Discuss how your requested feature would interact with existing features.
-
-        ⏱️ Lastly, tell us why we should prioritize your feature. What impact would it have?
-
-  - type: textarea
-    attributes:
-      label: 'What feature or change would you like to see made?'
-      description:
-        'Please include as much detail as possible including possibly mock up screen shots, workflow
-        or logic flow diagrams etc.'
-      placeholder: '...'
-    validations:
-      required: true
-  - type: textarea
-    attributes:
-      label: 'Why should we prioritize this feature?'
-      description: 'Discuss if and how the requested feature interacts with existing features.'
-      placeholder: '...'
-    validations:
-      required: true

.github/pull_request_template.md

@@ -1,91 +1,14 @@
-<!-- Do Not Delete This! pr_template -->
-<!-- Please read our Rules of Conduct: https://github.com/OHIF/Viewers/blob/master/CODE_OF_CONDUCT.md -->
-<!-- 🕮 Read our guide about our Contributing Guide here https://docs.ohif.org/development/contributing -->
-<!-- :hand: Thank you for starting this amazing contribution! -->
+### PR Checklist
+
+- [ ] Brief description of changes
+- [ ] Links to any relevant issues
+- [ ] Required status checks are passing
+- [ ] User cases if changes impact the user's experience
+- [ ] `@mention` a maintainer to request a review
 
 <!--
-⚠️⚠️ Please make sure the checklist section below is complete before submitting your PR.
-To complete the checklist, add an 'x' to each item: [] -> [x]
-(PRs that do not have all the checkboxes marked will not be approved)
--->
-
-### Context
-
-<!--
-Provide a clear explanation of the reasoning behind this change, such as:
-- A link to the issue being addressed, using the format "Fixes #ISSUE_NUMBER"
-- An image showing the issue or problem being addressed (if not already in the issue)
-- Error logs or callStacks to help with the understanding of the problem (if not already in the issue)
--->
-
-### Changes & Results
-
-<!--
-List all the changes that have been done, such as:
-- Add new components
-- Remove old components
-- Update dependencies
-
-What are the effects of this change?
-- Before vs After
-- Screenshots / GIFs / Videos
--->
-
-### Testing
-
-<!--
-Describe how we can test your changes.
-- open a URL
-- visit a page
-- click on a button
-- etc.
--->
-
-### Checklist
-
-#### PR
-
-<!--
-https://semantic-release.gitbook.io/semantic-release/#how-does-it-work
-
-Examples:
-Please note the letter casing in the provided examples (upper or lower).
-
-- feat(MeasurementService): add ...
-- fix(Toolbar): fix ...
-- docs(Readme): update ...
-- style(Whitespace): fix ...
-- refactor(ExtensionManager): ...
-- test(HangingProtocol): Add test ...
-- chore(git): update ...
-- perf(VolumeLoader): ...
-
-You don't need to have each commit within the Pull Request follow the rule,
-but the PR title must comply with it, as it will be used as the commit message
-after the commits are squashed.
--->
-
-- [] My Pull Request title is descriptive, accurate and follows the
-  semantic-release format and guidelines.
-
-#### Code
-
-- [] My code has been well-documented (function documentation, inline comments,
-  etc.)
-
-#### Public Documentation Updates
-
-<!-- https://docs.ohif.org/ -->
-
-- [] The documentation page has been updated as necessary for any public API
-  additions or removals.
-
-#### Tested Environment
-
-- [] OS: <!--[e.g. Windows 10, macOS 10.15.4]-->
-- [] Node version: <!--[e.g. 18.16.1]-->
-- [] Browser:
-  <!--[e.g. Chrome 83.0.4103.116, Firefox 77.0.1, Safari 13.1.1]-->
+  Links
+  -->
 
 <!-- prettier-ignore-start -->
 [blog]: https://circleci.com/blog/triggering-trusted-ci-jobs-on-untrusted-forks/

.github/stale.yml

@@ -4,22 +4,29 @@
 # Number of days of inactivity before an issue becomes stale
 daysUntilStale: 180
 # Number of days of inactivity before a stale issue is closed
-daysUntilClose: 60
+daysUntilClose: 9000
 # Issues with these labels will never be considered stale
 exemptLabels:
+  - 'Story :raised_hands:'
   - 'Bug: Verified :bug:'
+  - 'Task: CI/Tooling :robot:'
+  - 'Task: Docs 📖'
+  - 'Task: Docs :book:'
+  - 'Task: Refactor :hammer_and_wrench:'
+  - 'Task: Tests :microscope:'
   - 'PR: Awaiting Review 👀'
+  - 'Triage :white_flag:'
+  - 'Extension: Discussion'
   - 'Announcement 🎉'
   - 'IDC:priority'
   - 'IDC:candidate'
   - 'IDC:collaboration'
-  - 'Community: Request :hand:'
-  - 'Community: Report :bug:'
 # Label to use when marking an issue as stale
 staleLabel: 'Stale :baguette_bread:'
 # Comment to post when marking an issue as stale. Set to `false` to disable
 markComment: >
-  This issue has been automatically marked as stale because it has not had recent activity. It will
-  be closed if no further activity occurs. Thank you for your contributions.
+  This issue has been automatically marked as stale because it has not had
+  recent activity. It will be closed if no further activity occurs. Thank you
+  for your contributions.
 # Comment to post when closing a stale issue. Set to `false` to disable
 closeComment: false

.github/workflows/build-docs.yml

@@ -1,110 +0,0 @@
-name: Build and Deploy Docs
-
-on:
-  push:
-    branches: [master]
-
-env:
-  ACTIONS_STEP_DEBUG: true
-
-concurrency:
-  group: ${{ github.workflow }}-${{ github.ref }}
-  cancel-in-progress: true
-
-jobs:
-  build-and-deploy-docs:
-    timeout-minutes: 60
-    runs-on: ubuntu-latest
-    # Need permissions to read actions and pull requests
-    permissions:
-      actions: read
-      contents: read
-      pull-requests: read
-    steps:
-      - uses: actions/checkout@v4
-      - uses: oven-sh/setup-bun@v2
-        with:
-          bun-version: 1.2.23
-      - uses: actions/setup-node@v4
-        with:
-          node-version: 20 # Or your desired Node version
-
-      - name: Install root dependencies
-        run: bun install --frozen-lockfile
-
-      # Removed Playwright tests and coverage generation steps
-
-      - name: Find PR and associated workflow run
-        id: find_pr_run
-        env:
-          GH_TOKEN: ${{ github.token }}
-          MERGE_COMMIT_SHA: ${{ github.sha }}
-        run: |
-          # Find the PR associated with the merge commit SHA
-          # Note: This relies on the merge commit being directly pushed to main
-          PR_DATA=$(gh pr list --state merged --search "$MERGE_COMMIT_SHA" --json number,headRefOid --jq '.[0]')
-          if [ -z "$PR_DATA" ]; then
-            echo "Could not find merged PR for commit $MERGE_COMMIT_SHA."
-            # Decide how to handle - fail, or maybe generate coverage now?
-            # For now, let's fail.
-            exit 1
-          fi
-          PR_HEAD_SHA=$(echo "$PR_DATA" | jq -r '.headRefOid')
-          PR_NUMBER=$(echo "$PR_DATA" | jq -r '.number')
-          echo "Found PR Number: $PR_NUMBER"
-          echo "Found PR Head SHA: $PR_HEAD_SHA"
-
-          # Find the latest workflow run ID for the playwright workflow on the PR head commit
-          # Uses the workflow file name 'playwright.yml'
-          # Remove the --status success flag to find any run
-          RUN_ID=$(gh run list --workflow playwright.yml --commit "$PR_HEAD_SHA" --event pull_request --json databaseId --jq '.[0].databaseId')
-
-          if [ -z "$RUN_ID" ]; then
-            echo "Could not find any 'playwright.yml' run for PR $PR_NUMBER (Head SHA: $PR_HEAD_SHA)."
-            # Decide how to handle - maybe try finding the artifact from the merge commit run if that exists?
-            # For now, let's fail.
-            exit 1
-          fi
-          echo "Found Run ID: $RUN_ID"
-          echo "run_id=$RUN_ID" >> $GITHUB_OUTPUT
-
-      - name: Download coverage artifact from PR run
-        env:
-          GH_TOKEN: ${{ github.token }}
-        run: |
-          mkdir -p ./coverage-artifact
-          gh run download ${{ steps.find_pr_run.outputs.run_id }} -n coverage-report-pr --dir ./coverage-artifact
-          # Check if download was successful (e.g., check if files exist)
-          if [ ! -f ./coverage-artifact/base.css ]; then
-            echo "Failed to download or find expected files in artifact 'coverage-report-pr' from run ${{ steps.find_pr_run.outputs.run_id }}."
-            exit 1
-          fi
-          echo "Artifact downloaded successfully."
-
-      - name: Install docs dependencies
-        run: cd platform/docs && bun install
-
-      - name: Copy coverage to docs static directory
-        run: |
-          # Copy files from the downloaded artifact directory
-          mkdir -p platform/docs/static/coverage
-          cp -r ./coverage-artifact/* platform/docs/static/coverage/
-          # Copy specific asset files from the downloaded artifact root to static root
-          cp ./coverage-artifact/base.css platform/docs/static/
-          cp ./coverage-artifact/block-navigation.js platform/docs/static/
-          cp ./coverage-artifact/prettify.css platform/docs/static/
-          cp ./coverage-artifact/prettify.js platform/docs/static/
-          cp ./coverage-artifact/favicon.png platform/docs/static/
-          cp ./coverage-artifact/sort-arrow-sprite.png platform/docs/static/
-          cp ./coverage-artifact/sorter.js platform/docs/static/
-
-      - name: Build docs
-        run: cd platform/docs && bun run build
-
-      - name: Deploy to Netlify
-        run: |
-          cd platform/docs
-          npx netlify-cli deploy --dir=./build --prod
-        env:
-          NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
-          NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}

.github/workflows/codeql.yml

@@ -1,98 +0,0 @@
-# For most projects, this workflow file will not need changing; you simply need
-# to commit it to your repository.
-#
-# You may wish to alter this file to override the set of languages analyzed,
-# or to provide custom queries or build logic.
-#
-# ******** NOTE ********
-# We have attempted to detect the languages in your repository. Please check
-# the `language` matrix defined below to confirm you have the correct set of
-# supported CodeQL languages.
-#
-name: "CodeQL Advanced"
-
-on:
-  pull_request:
-    branches: [ "main" ]
-  schedule:
-    - cron: '15 1 * * 5'
-
-jobs:
-  analyze:
-    name: Analyze (${{ matrix.language }})
-    # Runner size impacts CodeQL analysis time. To learn more, please see:
-    #   - https://gh.io/recommended-hardware-resources-for-running-codeql
-    #   - https://gh.io/supported-runners-and-hardware-resources
-    #   - https://gh.io/using-larger-runners (GitHub.com only)
-    # Consider using larger runners or machines with greater resources for possible analysis time improvements.
-    runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
-    permissions:
-      # required for all workflows
-      security-events: write
-
-      # required to fetch internal or private CodeQL packs
-      packages: read
-
-      # only required for workflows in private repositories
-      actions: read
-      contents: read
-
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-        - language: actions
-          build-mode: none
-        - language: javascript-typescript
-          build-mode: none
-        # CodeQL supports the following values keywords for 'language': 'actions', 'c-cpp', 'csharp', 'go', 'java-kotlin', 'javascript-typescript', 'python', 'ruby', 'swift'
-        # Use `c-cpp` to analyze code written in C, C++ or both
-        # Use 'java-kotlin' to analyze code written in Java, Kotlin or both
-        # Use 'javascript-typescript' to analyze code written in JavaScript, TypeScript or both
-        # To learn more about changing the languages that are analyzed or customizing the build mode for your analysis,
-        # see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/customizing-your-advanced-setup-for-code-scanning.
-        # If you are analyzing a compiled language, you can modify the 'build-mode' for that language to customize how
-        # your codebase is analyzed, see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages
-    steps:
-    - name: Checkout repository
-      uses: actions/checkout@v4
-
-    # Add any setup steps before running the `github/codeql-action/init` action.
-    # This includes steps like installing compilers or runtimes (`actions/setup-node`
-    # or others). This is typically only required for manual builds.
-    # - name: Setup runtime (example)
-    #   uses: actions/setup-example@v1
-
-    # Initializes the CodeQL tools for scanning.
-    - name: Initialize CodeQL
-      uses: github/codeql-action/init@v3
-      with:
-        languages: ${{ matrix.language }}
-        build-mode: ${{ matrix.build-mode }}
-        # If you wish to specify custom queries, you can do so here or in a config file.
-        # By default, queries listed here will override any specified in a config file.
-        # Prefix the list here with "+" to use these queries and those in the config file.
-
-        # For more details on CodeQL's query packs, refer to: https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
-        # queries: security-extended,security-and-quality
-
-    # If the analyze step fails for one of the languages you are analyzing with
-    # "We were unable to automatically build your code", modify the matrix above
-    # to set the build mode to "manual" for that language. Then modify this step
-    # to build your code.
-    # ℹ️ Command-line programs to run using the OS shell.
-    # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
-    - if: matrix.build-mode == 'manual'
-      shell: bash
-      run: |
-        echo 'If you are using a "manual" build mode for one or more of the' \
-          'languages you are analyzing, replace this with the commands to build' \
-          'your code, for example:'
-        echo '  make bootstrap'
-        echo '  make release'
-        exit 1
-
-    - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@v3
-      with:
-        category: "/language:${{matrix.language}}"

.github/workflows/playwright.yml

@@ -1,58 +0,0 @@
-name: Playwright Tests
-on:
-  pull_request:
-    branches: [master, release/*]
-
-concurrency:
-  group: ${{ github.workflow }}-${{ github.ref }}
-  cancel-in-progress: true
-
-jobs:
-  playwright-tests:
-    timeout-minutes: 60
-    runs-on: self-hosted
-    strategy:
-      fail-fast: false
-      matrix:
-        node-version: [20]
-    steps:
-      - uses: actions/checkout@v4
-      - uses: oven-sh/setup-bun@v2
-        with:
-          bun-version: 1.2.23
-      - uses: actions/setup-node@v4
-        with:
-          node-version: ${{ matrix.node-version }}
-      - name: Install Yarn
-        run: npm install -g yarn@1.22.22
-      - name: Install dependencies
-        run: bun install --frozen-lockfile
-      - name: Install Playwright browsers
-        run: npx playwright install
-      - name: Run Playwright tests
-        run: |
-          export NODE_OPTIONS="--max_old_space_size=10192"
-          bun run test:e2e:coverage
-      - name: Create directory of test results
-        if: ${{ !cancelled() }}
-        run: |
-          mkdir -p packaged-test-results
-          cp -r ./tests/test-results packaged-test-results/ || true
-          cp ./tests/playwright-report.json packaged-test-results/ || true
-      - name: Upload directory of test results artifact
-        if: ${{ !cancelled() }}
-        uses: actions/upload-artifact@v4
-        with:
-          name: playwright-results
-          path: packaged-test-results/
-          retention-days: 5
-      - name: create the coverage report
-        run: |
-          bun nyc report --reporter=lcov --reporter=text
-      - name: Upload the coverage report to GitHub Actions Artifacts
-        if: ${{ !cancelled() }}
-        uses: actions/upload-artifact@v4
-        with:
-          name: coverage-report-pr
-          path: coverage
-          retention-days: 3

.gitignore

@@ -1,7 +1,6 @@
 # Packages
 node_modules
-.cursor/
-.nyc_output/
+
 # Output
 build
 dist
@@ -9,16 +8,15 @@ docs/_book
 src/version.js
 junit.xml
 coverage/
-.docz/
-.yarn/
-.nx/
-addOns/yarn.lock
-playwright-report/
+*.js.map
+.yarn
+platform/docs/.docusaurus
+platform/ui/storybook-static
 
 # YALC (for Erik)
 .yalc
 yalc.lock
-*.dcm
+
 # Logging, System files, misc.
 .idea/
 .npm
@@ -27,8 +25,6 @@ package-lock.json
 yarn-error.log
 .DS_Store
 .env
-*.code-workspace
-.directory
 
 # Common Example Data Directories
 sampledata/
@@ -37,29 +33,7 @@ docker/dcm4che/dcm4che-arc
 
 # Cypress test results
 videos/
-
+screenshots/
 
 # Locize settings
 .locize
-
-# autogenerated files
-platform/app/src/pluginImports.js
-/Viewers.iml
-platform/app/.recipes/Nginx-Dcm4Chee/logs/*
-platform/app/.recipes/OpenResty-Orthanc/logs/*
-.vercel
-
-.vs
-
-# PlayWright
-
-node_modules/
-tests/test-results/
-tests/playwright-report/
-/blob-report/
-/playwright/.cache/
-
-**/.claude/settings.local.json
-
-# Backup files
-*~

.gitmodules

@@ -1,4 +1,3 @@
 [submodule "testdata"]
 	path = testdata
 	url = https://github.com/OHIF/viewer-testdata-dicomweb.git
-	branch = main

.netlify/build-deploy-preview.sh

@@ -6,27 +6,26 @@ cd "$(dirname "$0")"
 cd .. # Up to project root
 
 # Helpful to verify which versions we're using
-echo 'My yarn version is... '
-
 yarn -v
 node -v
 
+# Install build deps and all monorepo package dependencies. Yarn Workspaces
+# should also symlink all projects appropriately
+yarn run lerna:restore
+yarn install --no-ignore-optional --pure-lockfile
+
 # Build && Move PWA Output
 yarn run build:ci
 mkdir -p ./.netlify/www/pwa
-mv platform/app/dist/* .netlify/www/pwa -v
-echo 'Web application built and copied'
+mv platform/viewer/dist/* .netlify/www/pwa -v
 
-# Build && Move Docusaurus Output (for the docs themselves)
-cd platform/docs
-yarn install --frozen-lockfile
-yarn run build
-cd ../..
-mkdir -p ./.netlify/www/docs
-mv platform/docs/build/* .netlify/www/docs -v
-echo 'Docs built (docusaurus) and copied'
+# Build && Move script output
+# yarn run build:package
 
 # Cache all of the node_module dependencies in
 # extensions, modules, and platform packages
 yarn run lerna:cache
 echo 'Nothing left to see here. Go home, folks.'
+
+# Build using react-scripts
+# npx cross-env PUBLIC_URL=/demo APP_CONFIG=config/netlify.js react-scripts --max_old_space_size=4096 build

.netlify/package.json

@@ -2,14 +2,14 @@
   "name": "root",
   "private": true,
   "engines": {
-    "node": ">=14",
+    "node": ">=10",
     "npm": ">=6",
     "yarn": ">=1.16.0"
   },
   "scripts": {
-    "deploy": "netlify deploy --prod --dir ./../platform/app/dist"
+    "deploy": "netlify deploy --prod --dir ./../platform/viewer/dist"
   },
   "devDependencies": {
-    "netlify-cli": "2.21.0"
+    "netlify-cli": "^2.21.0"
   }
 }

.netlify/www/_redirects

@@ -4,7 +4,3 @@
 
 # PWA Demo
 /pwa/* /pwa/index.html 200
-# UI Demo
-/ui/* /ui/index.html 200
-# UI Demo
-/docs/* /docs/index.html 200

.netlify/www/index.html

@@ -2,19 +2,12 @@
   <head>
     <title>OHIF Viewer: Deploy Preview</title>
   </head>
-
   <body>
     <h1>Index of Previews</h1>
 
     <ul>
       <li>
-        <a href="/pwa">OHIF Viewer</a>
-      </li>
-      <li>
-        <a href="/docs">Documentation</a>
-      </li>
-      <li>
-        <a href="/ui">UI: Component Library</a>
+        <a href="/pwa">Progressive Web App</a>
       </li>
     </ul>
   </body>

.node-version

@@ -1 +1 @@
-20.9.0
+14.18.0

.nycrc.json

@@ -1,24 +0,0 @@
-{
-  "extends": "@istanbuljs/nyc-config-typescript",
-  "instrument": true,
-  "sourceMap": true,
-  "cache": false,
-  "all": true,
-  "include": [
-    "platform/*/src/**/*.ts",
-    "platform/*/src/**/*.js",
-    "extensions/*/src/**/*.ts",
-    "extensions/*/src/**/*.js",
-    "modes/*/src/**/*.ts",
-    "modes/*/src/**/*.js"
-  ],
-  "exclude": [
-    "**/*.spec.ts",
-    "**/*.test.ts",
-    "**/test/**",
-    "**/tests/**",
-    "**/examples/**",
-    "**/stories/**",
-    "platform/docs/**"
-  ]
-}

.prettierignore

@@ -1 +0,0 @@
-*.md

.prettierrc

@@ -1,12 +1,8 @@
 {
-  "plugins": ["prettier-plugin-tailwindcss"],
   "trailingComma": "es5",
-  "printWidth": 100,
+  "printWidth": 80,
   "proseWrap": "always",
   "tabWidth": 2,
   "semi": true,
-  "singleQuote": true,
-  "arrowParens": "avoid",
-  "singleAttributePerLine": true,
-  "endOfLine": "auto"
+  "singleQuote": true
 }

.scripts/dicom-json-generator.js

@@ -1,273 +0,0 @@
-/*
- * This script uses nodejs to generate a JSON file from a DICOM study folder.
- * You need to have dcmjs installed in your project.
- * The JSON file can be used to load the study into the OHIF Viewer. You can get more detail
- * in the DICOM JSON Data source on docs.ohif.org
- *
- * Usage: node dicom-json-generator.js <studyFolder> <urlPrefix> <outputJSONPath> <optional scheme>
- *
- * params:
- * - studyFolder: path to the study folder which contains the DICOM files
- * - urlPrefix: prefix to the url that will be used to load the study into the viewer. For instance
- *   we use https://ohif-assets.s3.us-east-2.amazonaws.com/dicom-json/data as the urlPrefix for the
- *   example since the data is hosted on S3 and each study is in a folder. So the url in the generated
- *   json file for the first instance of the first series of the first study will be
- *   dicomweb:https://ohif-assets.s3.us-east-2.amazonaws.com/dicom-json/data/Series1/Instance1
- *
- *   as you see the dicomweb is a prefix that is used to load the data into the viewer, which is suited when
- *   the .dcm file is hosted statically and can be accessed via a URL (like our example above)
- *   However, you can specify a new scheme bellow.
- *
- * - outputJSONPath: path to the output JSON file
- * - scheme: default dicomweb if not provided
- */
-const dcmjs = require('dcmjs');
-const path = require('path');
-const fs = require('fs').promises;
-
-const args = process.argv.slice(2);
-const [studyDirectory, urlPrefix, outputPath, scheme = 'dicomweb'] = args;
-
-if (args.length < 3 || args.length > 4) {
-  console.error(
-    'Usage: node dicom-json-generator.js <studyFolder> <urlPrefix> <outputJSONPath> [scheme]'
-  );
-  process.exit(1);
-}
-
-const model = {
-  studies: [],
-};
-
-async function convertDICOMToJSON(studyDirectory, urlPrefix, outputPath, scheme) {
-  try {
-    const files = await recursiveReadDir(studyDirectory);
-    console.debug('Processing...');
-
-    for (const file of files) {
-      if (!file.includes('.DS_Store') && !file.includes('.xml')) {
-        const arrayBuffer = await fs.readFile(file);
-        const dicomDict = dcmjs.data.DicomMessage.readFile(arrayBuffer.buffer);
-        const instance = dcmjs.data.DicomMetaDictionary.naturalizeDataset(dicomDict.dict);
-
-        instance.fileLocation = createImageId(file, urlPrefix, studyDirectory, scheme);
-        processInstance(instance);
-      }
-    }
-
-    console.log('Successfully loaded data');
-
-    model.studies.forEach(study => {
-      study.NumInstances = findInstancesNumber(study);
-      study.Modalities = findModalities(study).join('/');
-    });
-
-    await fs.writeFile(outputPath, JSON.stringify(model, null, 2));
-    console.log('JSON saved');
-  } catch (error) {
-    console.error(error);
-  }
-}
-
-async function recursiveReadDir(dir) {
-  let results = [];
-  const list = await fs.readdir(dir);
-  for (const file of list) {
-    const filePath = path.resolve(dir, file);
-    const stat = await fs.stat(filePath);
-    if (stat.isDirectory()) {
-      const res = await recursiveReadDir(filePath);
-      results = results.concat(res);
-    } else {
-      results.push(filePath);
-    }
-  }
-  return results;
-}
-
-function createImageId(fileLocation, urlPrefix, studyDirectory, scheme) {
-  const relativePath = path.relative(studyDirectory, fileLocation);
-  const normalizedPath = path.normalize(relativePath).replace(/\\/g, '/');
-  return `${scheme}:${urlPrefix}${normalizedPath}`;
-}
-
-function processInstance(instance) {
-  const { StudyInstanceUID, SeriesInstanceUID } = instance;
-  let study = getStudy(StudyInstanceUID);
-
-  if (!study) {
-    study = createStudyMetadata(StudyInstanceUID, instance);
-    model.studies.push(study);
-  }
-
-  let series = getSeries(StudyInstanceUID, SeriesInstanceUID);
-
-  if (!series) {
-    series = createSeriesMetadata(instance);
-    study.series.push(series);
-  }
-
-  const instanceMetaData =
-    instance.NumberOfFrames > 1
-      ? createInstanceMetaDataMultiFrame(instance)
-      : createInstanceMetaData(instance);
-
-  series.instances.push(...[].concat(instanceMetaData));
-}
-
-function getStudy(StudyInstanceUID) {
-  return model.studies.find(study => study.StudyInstanceUID === StudyInstanceUID);
-}
-
-function getSeries(StudyInstanceUID, SeriesInstanceUID) {
-  const study = getStudy(StudyInstanceUID);
-  return study
-    ? study.series.find(series => series.SeriesInstanceUID === SeriesInstanceUID)
-    : undefined;
-}
-
-const findInstancesNumber = study => {
-  let numInstances = 0;
-  study.series.forEach(aSeries => {
-    numInstances = numInstances + aSeries.instances.length;
-  });
-  return numInstances;
-};
-
-const findModalities = study => {
-  let modalities = new Set();
-  study.series.forEach(aSeries => {
-    modalities.add(aSeries.Modality);
-  });
-  return Array.from(modalities);
-};
-
-function createStudyMetadata(StudyInstanceUID, instance) {
-  return {
-    StudyInstanceUID,
-    StudyDescription: instance.StudyDescription,
-    StudyDate: instance.StudyDate,
-    StudyTime: instance.StudyTime,
-    PatientName: instance.PatientName,
-    PatientID: instance.PatientID || '1234', // this is critical to have
-    AccessionNumber: instance.AccessionNumber,
-    PatientAge: instance.PatientAge,
-    PatientSex: instance.PatientSex,
-    PatientWeight: instance.PatientWeight,
-    series: [],
-  };
-}
-function createSeriesMetadata(instance) {
-  return {
-    SeriesInstanceUID: instance.SeriesInstanceUID,
-    SeriesDescription: instance.SeriesDescription,
-    SeriesNumber: instance.SeriesNumber,
-    SeriesTime: instance.SeriesTime,
-    Modality: instance.Modality,
-    SliceThickness: instance.SliceThickness,
-    instances: [],
-  };
-}
-function commonMetaData(instance) {
-  return {
-    Columns: instance.Columns,
-    Rows: instance.Rows,
-    InstanceNumber: instance.InstanceNumber,
-    SOPClassUID: instance.SOPClassUID,
-    AcquisitionNumber: instance.AcquisitionNumber,
-    PhotometricInterpretation: instance.PhotometricInterpretation,
-    BitsAllocated: instance.BitsAllocated,
-    BitsStored: instance.BitsStored,
-    PixelRepresentation: instance.PixelRepresentation,
-    SamplesPerPixel: instance.SamplesPerPixel,
-    PixelSpacing: instance.PixelSpacing,
-    HighBit: instance.HighBit,
-    ImageOrientationPatient: instance.ImageOrientationPatient,
-    ImagePositionPatient: instance.ImagePositionPatient,
-    FrameOfReferenceUID: instance.FrameOfReferenceUID,
-    ImageType: instance.ImageType,
-    Modality: instance.Modality,
-    SOPInstanceUID: instance.SOPInstanceUID,
-    SeriesInstanceUID: instance.SeriesInstanceUID,
-    StudyInstanceUID: instance.StudyInstanceUID,
-    WindowCenter: instance.WindowCenter,
-    WindowWidth: instance.WindowWidth,
-    RescaleIntercept: instance.RescaleIntercept,
-    RescaleSlope: instance.RescaleSlope,
-  };
-}
-
-function conditionalMetaData(instance) {
-  return {
-    ...(instance.ConceptNameCodeSequence && {
-      ConceptNameCodeSequence: instance.ConceptNameCodeSequence,
-    }),
-    ...(instance.SeriesDate && { SeriesDate: instance.SeriesDate }),
-    ...(instance.ReferencedSeriesSequence && {
-      ReferencedSeriesSequence: instance.ReferencedSeriesSequence,
-    }),
-    ...(instance.SharedFunctionalGroupsSequence && {
-      SharedFunctionalGroupsSequence: instance.SharedFunctionalGroupsSequence,
-    }),
-    ...(instance.PerFrameFunctionalGroupsSequence && {
-      PerFrameFunctionalGroupsSequence: instance.PerFrameFunctionalGroupsSequence,
-    }),
-    ...(instance.ContentSequence && { ContentSequence: instance.ContentSequence }),
-    ...(instance.ContentTemplateSequence && {
-      ContentTemplateSequence: instance.ContentTemplateSequence,
-    }),
-    ...(instance.CurrentRequestedProcedureEvidenceSequence && {
-      CurrentRequestedProcedureEvidenceSequence: instance.CurrentRequestedProcedureEvidenceSequence,
-    }),
-    ...(instance.CodingSchemeIdentificationSequence && {
-      CodingSchemeIdentificationSequence: instance.CodingSchemeIdentificationSequence,
-    }),
-    ...(instance.RadiopharmaceuticalInformationSequence && {
-      RadiopharmaceuticalInformationSequence: instance.RadiopharmaceuticalInformationSequence,
-    }),
-    ...(instance.ROIContourSequence && {
-      ROIContourSequence: instance.ROIContourSequence,
-    }),
-    ...(instance.StructureSetROISequence && {
-      StructureSetROISequence: instance.StructureSetROISequence,
-    }),
-    ...(instance.ReferencedFrameOfReferenceSequence && {
-      ReferencedFrameOfReferenceSequence: instance.ReferencedFrameOfReferenceSequence,
-    }),
-    ...(instance.CorrectedImage && { CorrectedImage: instance.CorrectedImage }),
-    ...(instance.Units && { Units: instance.Units }),
-    ...(instance.DecayCorrection && { DecayCorrection: instance.DecayCorrection }),
-    ...(instance.AcquisitionDate && { AcquisitionDate: instance.AcquisitionDate }),
-    ...(instance.AcquisitionTime && { AcquisitionTime: instance.AcquisitionTime }),
-    ...(instance.PatientWeight && { PatientWeight: instance.PatientWeight }),
-    ...(instance.NumberOfFrames && { NumberOfFrames: instance.NumberOfFrames }),
-    ...(instance.FrameTime && { FrameTime: instance.FrameTime }),
-    ...(instance.EncapsulatedDocument && { EncapsulatedDocument: instance.EncapsulatedDocument }),
-    ...(instance.SequenceOfUltrasoundRegions && {
-      SequenceOfUltrasoundRegions: instance.SequenceOfUltrasoundRegions,
-    }),
-  };
-}
-
-function createInstanceMetaData(instance) {
-  const metadata = {
-    ...commonMetaData(instance),
-    ...conditionalMetaData(instance),
-  };
-  return { metadata, url: instance.fileLocation };
-}
-
-function createInstanceMetaDataMultiFrame(instance) {
-  const instances = [];
-  const commonData = commonMetaData(instance);
-  const conditionalData = conditionalMetaData(instance);
-
-  for (let i = 1; i <= instance.NumberOfFrames; i++) {
-    const metadata = { ...commonData, ...conditionalData };
-    const result = { metadata, url: instance.fileLocation + `?frame=${i}` };
-    instances.push(result);
-  }
-  return instances;
-}
-
-convertDICOMToJSON(studyDirectory, urlPrefix, outputPath, scheme);

.vscode/extensions.json

@@ -1,13 +1,8 @@
 {
   "recommendations": [
     "esbenp.prettier-vscode",
-    "streetsidesoftware.code-spell-checker",
+    "sysoev.language-stylus",
     "dbaeumer.vscode-eslint",
-    "mikestead.dotenv",
-    "bungcip.better-toml",
-    "silvenon.mdx",
-    "gruntfuggly.todo-tree",
-    "wayou.vscode-todo-highlight",
-    "bradlc.vscode-tailwindcss"
+    "mikestead.dotenv"
   ]
 }

.vscode/launch.json

@@ -11,18 +11,5 @@
       "url": "http://localhost:3000",
       "webRoot": "${workspaceFolder}"
     }
-    // {
-    //   "name": "Debug Jest Tests",
-    //   "type": "node",
-    //   "request": "launch",
-    //   "runtimeArgs": [
-    //     "--inspect-brk",
-    //     "${workspaceRoot}/node_modules/.bin/jest",
-    //     "--runInBand"
-    //   ],
-    //   "console": "integratedTerminal",
-    //   "internalConsoleOptions": "neverOpen",
-    //   "port": 9229
-    // }
   ]
 }

.vscode/settings.json

@@ -1,5 +1,4 @@
 {
-  "editor.defaultFormatter": "esbenp.prettier-vscode",
   "editor.rulers": [80, 120],
   // ===
   // Spacing
@@ -15,103 +14,22 @@
   // Event Triggers
   // ===
   "editor.formatOnSave": true,
+  "eslint.autoFixOnSave": true,
   "eslint.run": "onSave",
-  "jest.autoRun": "off",
+  "eslint.validate": [
+    {
+      "language": "javascript",
+      "autoFix": true
+    },
+    {
+      "language": "javascriptreact",
+      "autoFix": true
+    }
+  ],
   "prettier.disableLanguages": ["html"],
   "prettier.endOfLine": "lf",
   "workbench.colorCustomizations": {},
   "editor.codeActionsOnSave": {
-    "source.fixAll.eslint": "explicit"
-  },
-  "cSpell.userWords": [
-    "aabb",
-    "architectured",
-    "attrname",
-    "Barksy",
-    "browserslist",
-    "bulkdata",
-    "Cacheable",
-    "cfun",
-    "clonedeep",
-    "Colormap",
-    "Colormaps",
-    "Comlink",
-    "cornerstonejs",
-    "Crosshairs",
-    "datasource",
-    "dcmjs",
-    "decache",
-    "decached",
-    "decaching",
-    "deepmerge",
-    "Dicom",
-    "dicomweb",
-    "DISPLAYSETS",
-    "glwindow",
-    "grababble",
-    "grabbable",
-    "Hounsfield",
-    "Interactable",
-    "Interactor",
-    "istyle",
-    "kitware",
-    "labelmap",
-    "labelmaps",
-    "livewire",
-    "Mergeable",
-    "multiframe",
-    "nifti",
-    "ofun",
-    "OHIF",
-    "polylines",
-    "POLYSEG",
-    "prapogation",
-    "precisionmetrics",
-    "prefetch",
-    "Prescaled",
-    "pydicom",
-    "Radiopharmaceutical",
-    "rasterizing",
-    "reconstructable",
-    "Rehydratable",
-    "renderable",
-    "resampler",
-    "resemblejs",
-    "reslice",
-    "resliced",
-    "Reslices",
-    "roadmap",
-    "ROADMAPS",
-    "rtstruct",
-    "Segmentations",
-    "semibold",
-    "sitk",
-    "SUBRESOLUTION",
-    "suvbsa",
-    "suvbw",
-    "suvlbm",
-    "textbox",
-    "thresholded",
-    "thresholding",
-    "timepoint",
-    "timepoints",
-    "TMTV",
-    "TOOLGROUP",
-    "tqdm",
-    "transferables",
-    "typedoc",
-    "unsubscriptions",
-    "uuidv",
-    "viewplane",
-    "viewports",
-    "Voxel",
-    "Voxels",
-    "Vtkjs",
-    "wado",
-    "wadors",
-    "wadouri",
-    "workerpool",
-    "Colorbar",
-    "Colorbars"
-  ]
+    "source.fixAll.eslint": true
+  }
 }

.webpack/helpers/excludeNodeModulesExcept.js

@@ -5,11 +5,11 @@ function excludeNodeModulesExcept(modules) {
   if (pathSep == '\\')
     // must be quoted for use in a regexp:
     pathSep = '\\\\';
-  var moduleRegExps = modules.map(function (modName) {
+  var moduleRegExps = modules.map(function(modName) {
     return new RegExp('node_modules' + pathSep + modName);
   });
 
-  return function (modulePath) {
+  return function(modulePath) {
     if (/node_modules/.test(modulePath)) {
       for (var i = 0; i < moduleRegExps.length; i++)
         if (moduleRegExps[i].test(modulePath)) return false;

.webpack/rules/cssToJavaScript.js

@@ -1,26 +1,14 @@
 const autoprefixer = require('autoprefixer');
-const path = require('path');
-const tailwindcss = require('tailwindcss');
-const tailwindConfigPath = path.resolve('../../platform/app/tailwind.config.js');
-const MiniCssExtractPlugin = require('mini-css-extract-plugin');
-const devMode = process.env.NODE_ENV !== 'production';
 
 const cssToJavaScript = {
   test: /\.css$/,
   use: [
-    //'style-loader',
-    devMode ? 'style-loader' : MiniCssExtractPlugin.loader,
+    'style-loader',
     { loader: 'css-loader', options: { importLoaders: 1 } },
     {
       loader: 'postcss-loader',
       options: {
-        postcssOptions: {
-          verbose: true,
-          plugins: [
-            [tailwindcss(tailwindConfigPath)],
-            [autoprefixer('last 2 version', 'ie >= 11')],
-          ],
-        },
+        plugins: () => [autoprefixer('last 2 version', 'ie >= 11')],
       },
     },
   ],

.webpack/rules/transpileJavaScript.js

@@ -4,6 +4,7 @@ function transpileJavaScript(mode) {
   const exclude =
     mode === 'production'
       ? excludeNodeModulesExcept([
+          'vtk.js',
           // 'dicomweb-client',
           // https://github.com/react-dnd/react-dnd/blob/master/babel.config.js
           'react-dnd',
@@ -20,24 +21,17 @@ function transpileJavaScript(mode) {
       : excludeNodeModulesExcept([]);
 
   return {
-    // Include mjs, ts, tsx, js, and jsx files.
-    test: /\.(mjs|ts|js)x?$/,
+    test: /\.jsx?$/,
     // These are packages that are not transpiled to our lowest supported
     // JS version (currently ES5). Most of these leverage ES6+ features,
     // that we need to transpile to a different syntax.
-    exclude: [/(codecs)/, /(dicomicc)/, exclude],
+    exclude,
     loader: 'babel-loader',
     options: {
       // Find babel.config.js in monorepo root
       // https://babeljs.io/docs/en/options#rootmode
       rootMode: 'upward',
       envName: mode,
-      cacheCompression: false,
-      // Note: This was causing a lot of issues with yarn link of the cornerstone
-      // only set this to true if you don't have a yarn link to external libs
-      // otherwise expect the lib changes not to be reflected in the dev server
-      // as it will be cached
-      cacheDirectory: false,
     },
   };
 }

.webpack/webpack.base.js

@@ -2,83 +2,39 @@
 const dotenv = require('dotenv');
 //
 const path = require('path');
-const fs = require('fs');
-
 const webpack = require('webpack');
-
-// ~~ PLUGINS
-// const BundleAnalyzerPlugin = require('webpack-bundle-analyzer').BundleAnalyzerPlugin;
-const TerserJSPlugin = require('terser-webpack-plugin');
-
-// ~~ PackageJSON
-// const vtkRules = require('vtk.js/Utilities/config/dependency.js').webpack.core
-//   .rules;
 // ~~ RULES
-// const loadShadersRule = require('./rules/loadShaders.js');
+const loadShadersRule = require('./rules/loadShaders.js');
 const loadWebWorkersRule = require('./rules/loadWebWorkers.js');
 const transpileJavaScriptRule = require('./rules/transpileJavaScript.js');
-const cssToJavaScript = require('./rules/cssToJavaScript.js');
-// Only uncomment for old v2 stylus
-// const stylusToJavaScript = require('./rules/stylusToJavaScript.js');
-const ReactRefreshWebpackPlugin = require('@pmmmwh/react-refresh-webpack-plugin');
-
+// ~~ PLUGINS
+const TerserJSPlugin = require('terser-webpack-plugin');
 // ~~ ENV VARS
 const NODE_ENV = process.env.NODE_ENV;
 const QUICK_BUILD = process.env.QUICK_BUILD;
 const BUILD_NUM = process.env.CIRCLE_BUILD_NUM || '0';
-const IS_COVERAGE = process.env.COVERAGE === 'true';
-
-// read from ../version.txt
-const VERSION_NUMBER = fs.readFileSync(path.join(__dirname, '../version.txt'), 'utf8') || '';
-
-const COMMIT_HASH = fs.readFileSync(path.join(__dirname, '../commit.txt'), 'utf8') || '';
 
 //
 dotenv.config();
 
-const defineValues = {
-  /* Application */
-  'process.env.NODE_ENV': JSON.stringify(process.env.NODE_ENV),
-  'process.env.NODE_DEBUG': JSON.stringify(process.env.NODE_DEBUG),
-  'process.env.DEBUG': JSON.stringify(process.env.DEBUG),
-  'process.env.PUBLIC_URL': JSON.stringify(process.env.PUBLIC_URL || '/'),
-  'process.env.BUILD_NUM': JSON.stringify(BUILD_NUM),
-  'process.env.VERSION_NUMBER': JSON.stringify(VERSION_NUMBER),
-  'process.env.COMMIT_HASH': JSON.stringify(COMMIT_HASH),
-  /* i18n */
-  'process.env.USE_LOCIZE': JSON.stringify(process.env.USE_LOCIZE || ''),
-  'process.env.LOCIZE_PROJECTID': JSON.stringify(process.env.LOCIZE_PROJECTID || ''),
-  'process.env.LOCIZE_API_KEY': JSON.stringify(process.env.LOCIZE_API_KEY || ''),
-  'process.env.REACT_APP_I18N_DEBUG': JSON.stringify(process.env.REACT_APP_I18N_DEBUG || ''),
-  'process.env.TEST_ENV': JSON.stringify(process.env.TEST_ENV || ''),
-};
+module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
+  if (!process.env.NODE_ENV) {
+    throw new Error('process.env.NODE_ENV not set');
+  }
 
-// Only redefine updated values.  This avoids warning messages in the logs
-if (!process.env.APP_CONFIG) {
-  defineValues['process.env.APP_CONFIG'] = '';
-}
-
-module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
   const mode = NODE_ENV === 'production' ? 'production' : 'development';
   const isProdBuild = NODE_ENV === 'production';
   const isQuickBuild = QUICK_BUILD === 'true';
 
   const config = {
     mode: isProdBuild ? 'production' : 'development',
-    devtool: isProdBuild ? 'source-map' : 'cheap-module-source-map',
-    entry: ENTRY,
-    optimization: {
-      // splitChunks: {
-      //   // include all types of chunks
-      //   chunks: 'all',
-      // },
-      //runtimeChunk: 'single',
-      minimize: isProdBuild,
-      sideEffects: false,
+    devtool: isProdBuild ? 'source-map' : 'eval-cheap-module-source-map',
+    entry: {
+      app: `${SRC_DIR}/index.js`,
     },
-    output: {
-      // clean: true,
-      publicPath: '/',
+    optimization: {
+      minimize: isProdBuild,
+      sideEffects: true,
     },
     context: SRC_DIR,
     stats: {
@@ -92,151 +48,58 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
       children: false,
       warnings: true,
     },
-    cache: {
-      type: 'filesystem',
-    },
     module: {
-      noParse: [/(dicomicc)/],
       rules: [
-        ...(isProdBuild
-          ? []
-          : [
-              ...(IS_COVERAGE
-                ? [
-                    {
-                      test: /\.[jt]sx?$/,
-                      exclude: /node_modules/,
-                      use: {
-                        loader: 'babel-loader',
-                        options: {
-                          presets: ['@babel/preset-typescript', '@babel/preset-react'],
-                          plugins: ['istanbul'],
-                        },
-                      },
-                    },
-                  ]
-                : [
-                    {
-                      test: /\.[jt]sx?$/,
-                      exclude: /node_modules/,
-                      loader: 'babel-loader',
-                      options: {
-                        plugins: isProdBuild ? [] : ['react-refresh/babel'],
-                      },
-                    },
-                  ]),
-            ]),
-        {
-          test: /\.svg?$/,
-          oneOf: [
-            {
-              use: [
-                {
-                  loader: '@svgr/webpack',
-                  options: {
-                    svgoConfig: {
-                      plugins: [
-                        {
-                          name: 'preset-default',
-                          params: {
-                            overrides: {
-                              removeViewBox: false,
-                            },
-                          },
-                        },
-                      ],
-                    },
-                    prettier: false,
-                    svgo: true,
-                    titleProp: true,
-                  },
-                },
-              ],
-              issuer: {
-                and: [/\.(ts|tsx|js|jsx|md|mdx)$/],
-              },
-            },
-          ],
-        },
         transpileJavaScriptRule(mode),
         loadWebWorkersRule,
-        // loadShadersRule,
-        {
-          test: /\.m?js/,
-          resolve: {
-            fullySpecified: false,
-          },
-        },
-        cssToJavaScript,
-        // Note: Only uncomment the following if you are using the old style of stylus in v2
-        // Also you need to uncomment this platform/app/.webpack/rules/extractStyleChunks.js
-        // stylusToJavaScript,
-        {
-          test: /\.wasm/,
-          type: 'asset/resource',
-        },
-        {
-          test: /\.(png|jpe?g|gif|svg)$/i,
-          use: [
-            {
-              loader: 'file-loader',
-              options: {
-                name: 'assets/images/[name].[ext]',
-              },
-            },
-          ],
-        },
-        {
-          test: /\.(woff|woff2|eot|ttf|otf)$/i,
-          type: 'asset/resource',
-        },
-      ], //.concat(vtkRules),
+        loadShadersRule,
+      ],
     },
     resolve: {
-      mainFields: ['module', 'browser', 'main'],
-      alias: {
-        // Viewer project
-        '@': path.resolve(__dirname, '../platform/app/src'),
-        '@components': path.resolve(__dirname, '../platform/app/src/components'),
-        '@hooks': path.resolve(__dirname, '../platform/app/src/hooks'),
-        '@routes': path.resolve(__dirname, '../platform/app/src/routes'),
-        '@state': path.resolve(__dirname, '../platform/app/src/state'),
-      },
       // Which directories to search when resolving modules
       modules: [
         // Modules specific to this package
         path.resolve(__dirname, '../node_modules'),
         // Hoisted Yarn Workspace Modules
         path.resolve(__dirname, '../../../node_modules'),
-        path.resolve(__dirname, '../platform/app/node_modules'),
-        path.resolve(__dirname, '../platform/ui/node_modules'),
         SRC_DIR,
       ],
       // Attempt to resolve these extensions in order.
-      extensions: ['.js', '.jsx', '.json', '.ts', '.tsx', '*'],
+      extensions: ['.js', '.jsx', '.json', '*'],
       // symlinked resources are resolved to their real path, not their symlinked location
       symlinks: true,
-      fallback: {
-        fs: false,
-        path: false,
-        zlib: false,
-        buffer: require.resolve('buffer'),
-      },
     },
     plugins: [
-      new webpack.DefinePlugin(defineValues),
-      new webpack.ProvidePlugin({
-        Buffer: ['buffer', 'Buffer'],
+      new webpack.DefinePlugin({
+        /* Application */
+        'process.env.NODE_ENV': JSON.stringify(process.env.NODE_ENV),
+        'process.env.DEBUG': JSON.stringify(process.env.DEBUG),
+        'process.env.APP_CONFIG': JSON.stringify(process.env.APP_CONFIG || ''),
+        'process.env.PUBLIC_URL': JSON.stringify(process.env.PUBLIC_URL || '/'),
+        'process.env.VERSION_NUMBER': webpack.DefinePlugin.runtimeValue(() => {
+          const package = require('../platform/viewer/package.json');
+          return JSON.stringify(package.version || '');
+        }, ['../platform/viewer/package.json']),
+        'process.env.BUILD_NUM': JSON.stringify(BUILD_NUM),
+        /* i18n */
+        'process.env.USE_LOCIZE': JSON.stringify(process.env.USE_LOCIZE || ''),
+        'process.env.LOCIZE_PROJECTID': JSON.stringify(process.env.LOCIZE_PROJECTID || ''),
+        'process.env.LOCIZE_API_KEY': JSON.stringify(process.env.LOCIZE_API_KEY || ''),
       }),
-      ...(isProdBuild ? [] : [new ReactRefreshWebpackPlugin({ overlay: false })]),
-      // Uncomment to generate bundle analyzer
-      // new BundleAnalyzerPlugin(),
     ],
+    // Fix: https://github.com/webpack-contrib/css-loader/issues/447#issuecomment-285598881
+    // For issue in cornerstone-wado-image-loader
+    node: {
+      fs: 'empty',
+    },
   };
 
   if (isProdBuild) {
     config.optimization.minimizer = [
       new TerserJSPlugin({
+        // Supports:
+        // source-map and inline-source-map
+        sourceMap: isProdBuild && !isQuickBuild,
         parallel: true,
         terserOptions: {},
       }),

.webpack/webpack.commonjs.js

@@ -0,0 +1,19 @@
+const merge = require('webpack-merge');
+const webpackBase = require('./webpack.base.js');
+const cssToJavaScriptRule = require('./rules/cssToJavaScript.js');
+const stylusToJavaScriptRule = require('./rules/stylusToJavaScript.js');
+
+/**
+ * WebPack configuration for CommonJS Bundles. Extends rules of BaseConfig by making
+ * sure we're bundling styles and other files that would normally be split in a
+ * PWA.
+ */
+module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
+  const baseConfig = webpackBase(env, argv, { SRC_DIR, DIST_DIR });
+
+  return merge(baseConfig, {
+    module: {
+      rules: [cssToJavaScriptRule, stylusToJavaScriptRule],
+    },
+  });
+};

CITATION.cff

@@ -0,0 +1,24 @@
+cff-version: 1.2.0
+message: "If you use this software, please cite it as below."
+authors:
+- family-names: "Ziegler"
+  given-names: "Erik"
+  orcid: "https://orcid.org/0000-0003-1857-8129"
+- family-names: "Urban"
+  given-names: "Trinity"
+- family-names: "Brown"
+  given-names: "Danny"
+- family-names: "Petts"
+  given-names: "James"
+- family-names: "Pieper"
+  given-names: "Steve D"
+- family-names: "Lewis"
+  given-names: "Rob"
+- family-names: "Hafey"
+  given-names: "Chris"
+- family-names: "Harris"
+  given-names: "Gordon J"
+title: "Open Health Imaging Foundation Viewer: An Extensible Open-Source Framework for Building Web-Based Imaging Applications to Support Cancer Research"
+doi: 10.1200/CCI.19.00131
+version: 1.0.0
+url: "https://github.com/OHIF/Viewers"

DATACITATION.md

@@ -1,297 +0,0 @@
-# OHIF public demo data sets
-
-The OHIF Viewer's public demo page, available at https://viewer.ohif.org/, uses publicly anonymized demo datasets.
-These datasets were mostly obtained from the [NIH NCI Imaging Data Commons](https://datacommons.cancer.gov/repository/imaging-data-commons)
-and [NIH NCI TCIA](https://www.cancerimagingarchive.net/). Before listing the datasets,
-we would like to extend a special thank you to all groups who have made their datasets publicly available.
-Without them, we would not have been able to create this demo page.
-
-Please find below the list of datasets used on the demo page, along with their respective citations.
-
-
-## Platforms
-
-### NIH NCI IDC
-
-- Fedorov, A., Longabaugh, W.J., Pot, D., Clunie, D.A., Pieper, S., Aerts, H.J., Homeyer, A., Lewis, R., Akbarzadeh, A., Bontempi, D. and Clifford, W., 2021. NCI imaging data commons. Cancer research, 81(16), p.4188.
-
-### NIH NCI TCIA
-
-- Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. Journal of Digital Imaging, 26(6), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7
-
-
-
-
-## Datasets
-Below you can find the StudyInstanceUID of the studies that are used in the demo page along with their citations.
-
-### 1.3.6.1.4.1.14519.5.2.1.267424821384663813780850856506829388886
-
-Segmentation of Vestibular Schwannoma from Magnetic Resonance Imaging: An Open Annotated Dataset and Baseline Algorithm (Vestibular-Schwannoma-SEG)
-
-- Shapey, J., Kujawa, A., Dorent, R., Wang, G., Bisdas, S., Dimitriadis, A., Grishchuck, D., Paddick, I., Kitchen, N., Bradford, R., Saeed, S., Ourselin, S., & Vercauteren, T. (2021). Segmentation of Vestibular Schwannoma from Magnetic Resonance Imaging: An Open Annotated Dataset and Baseline Algorithm [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.9YTJ-5Q73
-
-- Shapey, J., Kujawa, A., Dorent, R., Wang, G., Dimitriadis, A., Grishchuk, D., Paddick, I., Kitchen, N., Bradford, R., Saeed, S. R., Bisdas, S., Ourselin, S., & Vercauteren, T. (2021). Segmentation of vestibular schwannoma from MRI, an open annotated dataset and baseline algorithm. In Scientific Data (Vol. 8, Issue 1). Springer Science and Business Media LLC. https://doi.org/10.1038/s41597-021-01064-w
-
-
-### 1.3.6.1.4.1.14519.5.2.1.7009.2403.334240657131972136850343327463
-### 1.3.6.1.4.1.14519.5.2.1.7009.2403.871108593056125491804754960339
-
-
-ACRIN-NSCLC-FDG-PET (ACRIN 6668)
-
-- Kinahan, P., Muzi, M., Bialecki, B., Herman, B., & Coombs, L. (2019). Data from the ACRIN 6668 Trial NSCLC-FDG-PET (Version 2) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/tcia.2019.30ilqfcl
-
-- Machtay, M., Duan, F., Siegel, B. A., Snyder, B. S., Gorelick, J. J., Reddin, J. S., Munden, R., Johnson, D. W., Wilf, L. H., DeNittis, A., Sherwin, N., Cho, K. H., Kim, S., Videtic, G., Neumann, D. R., Komaki, R., Macapinlac, H., Bradley, J. D., & Alavi, A. (2013). Prediction of Survival by [18F]Fluorodeoxyglucose Positron Emission Tomography in Patients With Locally Advanced Non–Small-Cell Lung Cancer Undergoing Definitive Chemoradiation Therapy: Results of the ACRIN 6668/RTOG 0235 Trial. In Journal of Clinical Oncology (Vol. 31, Issue 30, pp. 3823–3830). American Society of Clinical Oncology (ASCO). https://doi.org/10.1200/jco.2012.47.5947
-
-
-### 2.25.103659964951665749659160840573802789777
-
-The Cancer Genome Atlas Glioblastoma Multiforme Collection (TCGA-GBM)
-
-- Scarpace, L., Mikkelsen, T., Cha, S., Rao, S., Tekchandani, S., Gutman, D., Saltz, J. H., Erickson, B. J., Pedano, N., Flanders, A. E., Barnholtz-Sloan, J., Ostrom, Q., Barboriak, D., & Pierce, L. J. (2016). The Cancer Genome Atlas Glioblastoma Multiforme Collection (TCGA-GBM) (Version 4) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2016.RNYFUYE9
-
-
-### 1.3.6.1.4.1.14519.5.2.1.256467663913010332776401703474716742458
-
-Abdominal or pelvic enhanced CT images within 10 days before surgery of 230 patients with stage II colorectal cancer (StageII-Colorectal-CT)
-
-
-- Tong T., Li M. (2022) Abdominal or pelvic enhanced CT images within 10 days before surgery of 230 patients with stage II colorectal cancer (StageII-Colorectal-CT) [Dataset]. The Cancer Imaging Archive. DOI: https://doi.org/10.7937/p5k5-tg43
-
-- Li, M., Gong, J., Bao, Y., Huang, D., Peng, J., & Tong, T. (2022). Special issue “The advance of solid tumor research in China”: Prognosis prediction for stage II colorectal cancer by fusing computed tomography radiomics and deep‐learning features of primary lesions and peripheral lymph nodes. In International Journal of Cancer. Wiley. https://doi.org/10.1002/ijc.34053
-
-
-### 1.3.6.1.4.1.14519.5.2.1.3023.4024.215308722288168917637555384485
-
-The Cancer Genome Atlas Sarcoma Collection (TCGA-SARC)
-
-- Roche, C., Bonaccio, E., & Filippini, J. (2016). The Cancer Genome Atlas Sarcoma Collection (TCGA-SARC) (Version 3) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2016.CX6YLSUX
-
-
-
-### 1.3.6.1.4.1.14519.5.2.1.4792.2001.105216574054253895819671475627
-
-BREAST-DIAGNOSIS
-
-
-- Bloch, B. Nicolas, Jain, Ashali, & Jaffe, C. Carl. (2015). BREAST-DIAGNOSIS [Data set]. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2015.SDNRQXXR
-
-
-
-
-### 1.3.6.1.4.1.14519.5.2.1.1706.8374.643249677828306008300337414785
-
-Multimodality annotated HCC cases with and without advanced imaging segmentation (HCC-TACE-Seg)
-
-
-- Moawad, A. W., Fuentes, D., Morshid, A., Khalaf, A. M., Elmohr, M. M., Abusaif, A., Hazle, J. D., Kaseb, A. O., Hassan, M., Mahvash, A., Szklaruk, J., Qayyom, A., & Elsayes, K. (2021). Multimodality annotated HCC cases with and without advanced imaging segmentation [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.5FNA-0924
-
-- Morshid, A., Elsayes, K. M., Khalaf, A. M., Elmohr, M. M., Yu, J., Kaseb, A. O., Hassan, M., Mahvash, A., Wang, Z., Hazle, J. D., & Fuentes, D. (2019). A Machine Learning Model to Predict Hepatocellular Carcinoma Response to Transcatheter Arterial Chemoembolization. Radiology: Artificial Intelligence, 1(5), e180021. https://doi.org/10.1148/ryai.2019180021
-
-
-
-### 1.3.6.1.4.1.14519.5.2.1.1188.2803.137585363493444318569098508293
-
-Ultrasound data of a variety of liver masses (B-mode-and-CEUS-Liver)
-
-- Eisenbrey, J., Lyshchik, A., & Wessner, C. (2021). Ultrasound data of a variety of liver masses [Data set]. The Cancer Imaging Archive.  DOI: https://doi.org/10.7937/TCIA.2021.v4z7-tc39
-
-
-
-### 1.3.6.1.4.1.32722.99.99.62087908186665265759322018723889952421
-
-NSCLC-Radiomics
-
-- Aerts, H. J. W. L., Wee, L., Rios Velazquez, E., Leijenaar, R. T. H., Parmar, C., Grossmann, P., Carvalho, S., Bussink, J., Monshouwer, R., Haibe-Kains, B., Rietveld, D., Hoebers, F., Rietbergen, M. M., Leemans, C. R., Dekker, A., Quackenbush, J., Gillies, R. J., Lambin, P. (2019). Data From NSCLC-Radiomics (version 4) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2015.PF0M9REI
-
-
-- Aerts, H. J. W. L., Velazquez, E. R., Leijenaar, R. T. H., Parmar, C., Grossmann, P., Carvalho, S., Bussink, J., Monshouwer, R., Haibe-Kains, B., Rietveld, D., Hoebers, F., Rietbergen, M. M., Leemans, C. R., Dekker, A., Quackenbush, J., Gillies, R. J., Lambin, P. (2014, June 3). Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach. Nature Communications. Nature Publishing Group. https://doi.org/10.1038/ncomms5006  (link)
-
-
-### 1.3.6.1.4.1.14519.5.2.1.3671.4754.298665348758363466150039312520
-
-QIN-PROSTATE-Repeatability
-
-- Fedorov, A; Schwier, M; Clunie, D; Herz, C; Pieper, S; Kikinis, R; Tempany, C; Fennessy, F. (2018). Data From QIN-PROSTATE-Repeatability. The Cancer Imaging Archive. DOI: 10.7937/K9/TCIA.2018.MR1CKGND
-
-
-- Fedorov A, Vangel MG, Tempany CM, Fennessy FM. Multiparametric Magnetic Resonance Imaging of the Prostate: Repeatability of Volume and Apparent Diffusion Coefficient Quantification. Investigative Radiology. 52, 538–546 (2017). DOI: 10.1097/RLI.0000000000000382
-
-- Fedorov, A., Schwier, M., Clunie, D., Herz, C., Pieper, S., Kikinis,R., Tempany, C. & Fennessy, F. An annotated test-retest collection of prostate multiparametric MRI. Scientific Data 5, 180281 (2018). DOI:
-
-### 2.25.141277760791347900862109212450152067508
-
-The Clinical Proteomic Tumor Analysis Consortium Clear Cell Renal Cell Carcinoma Collection (CPTAC-CCRCC)
-
-- National Cancer Institute Clinical Proteomic Tumor Analysis Consortium (CPTAC). (2018). The Clinical Proteomic Tumor Analysis Consortium Clear Cell Renal Cell Carcinoma Collection (CPTAC-CCRCC) (Version 10) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2018.OBLAMN27
-
-- The CPTAC program requests that publications using data from this program include the following statement: “Data used in this publication were generated by the National Cancer Institute Clinical Proteomic Tumor Analysis Consortium (CPTAC).”
-
-
-### 2.25.275741864483510678566144889372061815320
-
-National Lung Screening Trial
-
--  National Lung Screening Trial Research Team. (2013). Data from the National Lung Screening Trial (NLST) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.HMQ8-J677
-
-- National Lung Screening Trial Research Team*; Aberle DR, Adams AM, Berg CD, Black WC, Clapp JD, Fagerstrom RM, Gareen IF, Gatsonis C, Marcus PM, Sicks JD (2011). Reduced Lung-Cancer Mortality with Low-Dose Computed Tomographic Screening. New England Journal of Medicine, 365(5), 395–409. https://doi.org/10.1056/nejmoa1102873
-
-
-### 1.3.6.1.4.1.14519.5.2.1.99.1071.26968527900428638961173806140069
-
-Stony Brook University COVID-19 Positive Cases (COVID-19-NY-SBU)
-
-- Saltz, J., Saltz, M., Prasanna, P., Moffitt, R., Hajagos, J., Bremer, E., Balsamo, J., & Kurc, T. (2021). Stony Brook University COVID-19 Positive Cases [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.BBAG-2923
-
-
-### 2.16.840.1.114362.1.11972228.22789312658.616067305.306.2
-
-https://data.kitware.com/
-
-
-### 1.2.276.0.7230010.3.1.2.296485376.1.1665793212.499772
-### 2.25.269859997690759739055099378767846712697
-### 1.3.6.1.4.1.14519.5.2.1.5099.8010.217836670708542506360829799868
-### 1.3.6.1.4.1.14519.5.2.1.4792.2001.232252967813565730694525674696
-### 1.3.6.1.4.1.14519.5.2.1.4792.2001.105216574054253895819671475627
-### 1.3.6.1.4.1.5962.99.1.1117.5035.1620319789811.1.2.1
-### 1.3.6.1.4.1.5962.99.1.1123.9231.1620326176300.1.2.1
-### 1.3.6.1.4.1.5962.99.1.1126.3483.1620329455972.1.2.1
-
-https://github.com/ImagingInformatics/hackathon-images
-
-### 2.16.124.113543.6004.101.103.20021117.162333.1
-### 2.16.124.113543.6004.101.103.20021117.190619.1
-### 2.16.124.113543.6004.101.103.20021117.123455.1
-### 2.16.124.113543.6004.101.103.20021117.061159.1
-
-https://www.aapm.org/
-
-
-### 1.2.840.113619.2.30.1.1762295590.1623.978668949.886
-
-
-### 1.2.276.0.7230010.3.1.2.447481088.1.1669202398.851612
-
-Custom data SPECT, specifically I123-FP-CIT (DaTSCAN) SPECT, evaluates the dopaminergic system to diagnose Parkinson's disease, especially when tremor symptoms are unclear. It helps distinguish Parkinson's disease from treatment-related tremor.
-
-
-
-### 1.3.6.1.4.1.9328.50.1.54652
-
-https://www.cancerimagingarchive.net/collection/rider-pilot/
-
-Lung Image Database Consortium (LIDC). (2023) RIDER Pilot [Data set]. The Cancer Imaging Archive (TCIA). https://doi.org/10.7937/m87f-mz83
-
-### 1.3.6.1.4.1.14519.5.2.1.331759366792756327296606233801322964986
-
-Mayr, N., Yuh, W. T. C., Bowen, S., Harkenrider, M., Knopp, M. V., Lee, E. Y.-P., Leung, E., Lo, S. S., Small Jr., W., & Wolfson, A. H. (2023). Cervical Cancer – Tumor Heterogeneity: Serial Functional and Molecular Imaging Across the Radiation Therapy Course in Advanced Cervical Cancer (Version 1) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/ERZ5-QZ59
-
-https://www.cancerimagingarchive.net/collection/cc-tumor-heterogeneity/
-
-### 1.3.6.1.4.1.14519.5.2.1.297577087050970310787702792940607009472
-
-Eslick, E. M., Kipritidis, J., Gradinscak, D., Stevens, M. J., Bailey, D. L., Harris, B., Booth, J. T., & Keall, P. J. (2022). CT Ventilation as a functional imaging modality for lung cancer radiotherapy (CT-vs-PET-Ventilation-Imaging) (Version 1) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/3ppx-7s22
-
-https://www.cancerimagingarchive.net/collection/ct-vs-pet-ventilation-imaging/
-
-
-### 1.3.6.1.4.1.14519.5.2.1.2103.7010.634114621738943599785009586807
-### 1.3.6.1.4.1.14519.5.2.1.2103.7010.135953723682765205394176991681
-
-Huang, W., Tudorica, A., Chui, S., Kemmer, K., Naik, A., Troxell, M., Oh, K., Roy, N., Afzal, A., & Holtorf, M. (2014). Variations of dynamic contrast-enhanced magnetic resonance imaging in evaluation of breast cancer therapy response: a multicenter data analysis challenge (QIN Breast DCE-MRI) (Version 2) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/k9/tcia.2014.a2n1ixox
-
-https://www.cancerimagingarchive.net/collection/qin-breast-dce-mri/
-
-
-### 1.3.6.1.4.1.14519.5.2.1.1.24766180081901755714059656629507905556
-
-
-Cancer Moonshot Biobank. (2023). Cancer Moonshoot Biobank – Acute Myeloid Leukemia (CMB-AML) (Version 4) [Dataset]. The Cancer Imaging Archive. https://doi.org/10.7937/PCTE-6M66
-
-https://www.cancerimagingarchive.net/collection/cmb-aml/
-
-### 1.3.6.1.4.1.14519.5.2.1.3098.5025.285242291560760827564488897577
-
-https://www.cancerimagingarchive.net/collection/anti-pd-1_lung/
-
-Madhavi, P., Patel, S., & Tsao, A. S. (2019). Data from Anti-PD-1 Immunotherapy Lung [Data set]. The Cancer Imaging Archive. DOI:  10.7937/tcia.2019.zjjwb9ip
-
-### 1.3.6.1.4.1.14519.5.2.1.1.84416332615988066829602832830236187384
-
-https://www.cancerimagingarchive.net/collection/cmb-pca/
-
-Cancer Moonshot Biobank. (2022). Cancer Moonshot Biobank – Prostate Cancer Collection (CMB-PCA) (Version 7) [Dataset]. The Cancer Imaging Archive. https://doi.org/10.7937/25T7-6Y12
-
-### 1.3.6.1.4.1.32722.99.99.239341353911714368772597187099978969331
-
-Aerts, H. J. W. L., Wee, L., Rios Velazquez, E., Leijenaar, R. T. H., Parmar, C., Grossmann, P., Carvalho, S., Bussink, J., Monshouwer, R., Haibe-Kains, B., Rietveld, D., Hoebers, F., Rietbergen, M. M., Leemans, C. R., Dekker, A., Quackenbush, J., Gillies, R. J., Lambin, P. (2014). Data From NSCLC-Radiomics (version 4) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2015.PF0M9REI
-
-https://www.cancerimagingarchive.net/collection/nsclc-radiomics/
-
-### 1.3.6.1.4.1.14519.5.2.1.7085.2626.494695569589117268722281491772
-
-https://www.cancerimagingarchive.net/collection/cptac-ucec/
-
-
-National Cancer Institute Clinical Proteomic Tumor Analysis Consortium (CPTAC). (2019). The Clinical Proteomic Tumor Analysis Consortium Uterine Corpus Endometrial Carcinoma Collection (CPTAC-UCEC) (Version 12) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2018.3R3JUISW
-
-### 1.3.6.1.4.1.14519.5.2.1.207544490797667703011829289839681390478
-
-https://www.cancerimagingarchive.net/collection/remind/
-
-Juvekar, P., Dorent, R., Kögl, F., Torio, E., Barr, C., Rigolo, L., Galvin, C., Jowkar, N., Kazi, A., Haouchine, N., Cheema, H., Navab, N., Pieper, S., Wells, W. M., Bi, W. L., Golby, A., Frisken, S., & Kapur, T. (2023). The Brain Resection Multimodal Imaging Database (ReMIND) (Version 1) [dataset]. The Cancer Imaging Archive. https://doi.org/10.7937/3RAG-D070
-
-### 1.3.12.2.1107.5.1.4.60175.30000008042114404745300000010
-
-Gavrielides, M. A., Kinnard, L. M., Myers, K. J., Peregoy, J., Pritchard, W. F., Zeng, R., Esparza, J., Karanian, J., & Petrick, N. (2015). Data From Phantom FDA [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/k9/TCIA.2015.orbjkmux
-
-https://www.cancerimagingarchive.net/collection/phantom-fda/
-
-
-### 1.3.6.1.4.1.14519.5.2.1.6834.5010.992793141464713669479982159310
-
-https://www.cancerimagingarchive.net/collection/4d-lung/
-
-
-Hugo, G. D., Weiss, E., Sleeman, W. C., Balik, S., Keall, P. J., Lu, J., & Williamson, J. F. (2016). Data from 4D Lung Imaging of NSCLC Patients (Version 2) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2016.ELN8YGLE
-
-
-### 1.3.6.1.4.1.9328.50.17.15423521354819720574322014551955370036
-
-https://www.cancerimagingarchive.net/collection/rider-lung-pet-ct/
-
-Muzi P, Wanner M, & Kinahan P. (2015). Data From RIDER Lung PET-CT. The Cancer Imaging Archive. https://doi.org/10.7937/k9/tcia.2015.ofip7tvm
-
-### 1.3.6.1.4.1.14519.5.2.1.9823.1001.134394060407147891170882809392
-
-https://www.cancerimagingarchive.net/collection/prostate-mri/
-
-Choyke P, Turkbey B, Pinto P, Merino M, Wood B. (2016). Data From PROSTATE-MRI. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2016.6046GUDv
-
-### 1.3.6.1.4.1.14519.5.2.1.191696062987463500085282581898315738844
-
-https://www.cancerimagingarchive.net/collection/upenn-gbm/
-
-Bakas, S., Sako, C., Akbari, H., Bilello, M., Sotiras, A., Shukla, G., Rudie, J. D., Flores Santamaria, N., Fathi Kazerooni, A., Pati, S., Rathore, S., Mamourian, E., Ha, S. M., Parker, W., Doshi, J., Baid, U., Bergman, M., Binder, Z. A., Verma, R., … Davatzikos, C. (2021). Multi-parametric magnetic resonance imaging (mpMRI) scans for de novo Glioblastoma (GBM) patients from the University of Pennsylvania Health System (UPENN-GBM) (Version 2) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.709X-DN49
-
-### 1.3.6.1.4.1.14519.5.2.1.4792.2001.921758700577562664959693695481
-
-https://www.cancerimagingarchive.net/collection/breast-diagnosis/
-
-Bloch, B. Nicolas, Jain, Ashali, & Jaffe, C. Carl. (2015). BREAST-DIAGNOSIS [Data set]. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2015.SDNRQXXR
-
-
-### 1.3.6.1.4.1.14519.5.2.1.1620.1225.189514895974227080410265976065
-
-Comstock, C. E., Gatsonis, C., Newstead, G. M., Snyder, B. S., Gareen, I. F., Bergin, J. T., Rahbar, H., Sung, J. S., Jacobs, C., Harvey, J. A., Nicholson, M. H., Ward, R. C., Holt, J., Prather, A., Miller, K. D., Schnall, M. D., & Kuhl, C. K. (2023). Abbreviated Breast MRI and Digital Tomosynthesis Mammography in Screening Women With Dense Breasts (EA1141) (Version 1) [dataset]. The Cancer Imaging Archive. https://doi.org/10.7937/2BAS-HR33
-
-https://www.cancerimagingarchive.net/collection/ea1141/
-
-### 1.2.276.0.7230010.3.1.2.2155604110.4180.1021041295.21
-
-From OFFIS DICOM-Team
-
-https://www.offis.de/
-OFFIS DICOM-Team

Dockerfile

@@ -1,5 +1,4 @@
-# syntax=docker/dockerfile:1.7-labs
-# This dockerfile is used to publish the `ohif/app` image on dockerhub.
+# This dockerfile is used to publish the `ohif/viewer` image on dockerhub.
 #
 # It's a good example of how to build our static application and package it
 # with a web server capable of hosting it as static content.
@@ -20,86 +19,48 @@
 #
 
 
-# syntax=docker/dockerfile:1.7-labs
-# This dockerfile is used to publish the `ohif/app` image on dockerhub.
-#
-# It's a good example of how to build our static application and package it
-# with a web server capable of hosting it as static content.
-#
-# docker build
-# --------------
-# If you would like to use this dockerfile to build and tag an image, make sure
-# you set the context to the project's root directory:
-# https://docs.docker.com/engine/reference/commandline/build/
-#
-#
-# SUMMARY
-# --------------
-# This dockerfile is used as an input for a second stage to make things run faster.
-#
-
-
 # Stage 1: Build the application
 # docker build -t ohif/viewer:latest .
-# Copy Files
-FROM node:20.18.1-slim as builder
-
-RUN apt-get update && apt-get install -y build-essential python3
-
+FROM node:14-slim as builder
 
 RUN mkdir /usr/src/app
 WORKDIR /usr/src/app
-RUN npm install -g bun@1.2.23
-RUN npm install -g lerna@7.4.2
-ENV PATH=/usr/src/app/node_modules/.bin:$PATH
 
-# Do an initial install and then a final install
-COPY package.json yarn.lock preinstall.js lerna.json ./
-COPY --parents ./addOns/package.json ./addOns/*/*/package.json ./extensions/*/package.json ./modes/*/package.json ./platform/*/package.json ./
+# Copy Files
+COPY .docker /usr/src/app/.docker
+COPY .webpack /usr/src/app/.webpack
+COPY extensions /usr/src/app/extensions
+COPY platform /usr/src/app/platform
+COPY .browserslistrc /usr/src/app/.browserslistrc
+COPY aliases.config.js /usr/src/app/aliases.config.js
+COPY babel.config.js /usr/src/app/babel.config.js
+COPY lerna.json /usr/src/app/lerna.json
+COPY package.json /usr/src/app/package.json
+COPY postcss.config.js /usr/src/app/postcss.config.js
+COPY yarn.lock /usr/src/app/yarn.lock
+
+RUN apt-get update && apt-get install -y python make g++
 # Run the install before copying the rest of the files
+RUN yarn config set workspaces-experimental true
+RUN yarn install --verbose
 
-RUN bun pm cache rm
-RUN bun install
-RUN bun add ajv@8.12.0
-# Copy the local directory
-COPY --link --exclude=yarn.lock --exclude=package.json --exclude=Dockerfile . .
-
-# Build here
-# After install it should hopefully be stable until the local directory changes
+ENV PATH /usr/src/app/node_modules/.bin:$PATH
 ENV QUICK_BUILD true
 # ENV GENERATE_SOURCEMAP=false
-ARG APP_CONFIG=config/default.js
-ARG PUBLIC_URL=/
-ENV PUBLIC_URL=${PUBLIC_URL}
+# ENV REACT_APP_CONFIG=config/default.js
 
-RUN bun run show:config
-RUN bun run build
+RUN yarn run build
 
-# Precompress files
-RUN chmod u+x .docker/compressDist.sh
-RUN ./.docker/compressDist.sh
-
-# Stage 3: Bundle the built application into a Docker container
+# Stage 2: Bundle the built application into a Docker container
 # which runs Nginx using Alpine Linux
-FROM nginxinc/nginx-unprivileged:1.27-alpine as final
-#RUN apk add --no-cache bash
-ARG PUBLIC_URL=/
-ENV PUBLIC_URL=${PUBLIC_URL}
-ARG PORT=80
-ENV PORT=${PORT}
-RUN rm /etc/nginx/conf.d/default.conf
-USER nginx
-COPY --chown=nginx:nginx .docker/Viewer-v3.x /usr/src
+FROM nginx:1.21.1-alpine
+RUN apk add --no-cache bash
+RUN rm -rf /etc/nginx/conf.d
+COPY .docker/Viewer-v2.x /etc/nginx/conf.d
+COPY .docker/Viewer-v2.x/entrypoint.sh /usr/src/
 RUN chmod 777 /usr/src/entrypoint.sh
-COPY --from=builder /usr/src/app/platform/app/dist /usr/share/nginx/html${PUBLIC_URL}
-# Copy paths that are renamed/redirected generally
-# Microscopy libraries depend on root level include, so must be copied
-COPY --from=builder /usr/src/app/platform/app/dist/dicom-microscopy-viewer /usr/share/nginx/html/dicom-microscopy-viewer
-
-# In entrypoint.sh, app-config.js might be overwritten, so chmod it to be writeable.
-# The nginx user cannot chmod it, so change to root.
-USER root
-RUN chown -R nginx:nginx /usr/share/nginx/html && chmod -R 777 /usr/share/nginx/html
-USER nginx
+COPY --from=builder /usr/src/app/platform/viewer/dist /usr/share/nginx/html
+EXPOSE 80
+EXPOSE 443
 ENTRYPOINT ["/usr/src/entrypoint.sh"]
 CMD ["nginx", "-g", "daemon off;"]

README.md

@@ -1,59 +1,40 @@
 <!-- prettier-ignore-start -->
+<!-- markdownlint-disable -->
 <div align="center">
   <h1>OHIF Medical Imaging Viewer</h1>
-  <p><strong>The OHIF Viewer</strong> is a zero-footprint medical image viewer
-provided by the <a href="https://ohif.org/">Open Health Imaging Foundation (OHIF)</a>. It is a configurable and extensible progressive web application with out-of-the-box support for image archives which support <a href="https://www.dicomstandard.org/using/dicomweb/">DICOMweb</a>.</p>
+  <p><strong>The OHIF Viewer</strong> is a zero-footprint medical image viewer provided by the <a href="http://ohif.org/">Open Health Imaging Foundation (OHIF)</a>. It is a configurable and extensible progressive web application with out-of-the-box support for image archives which support <a href="https://www.dicomstandard.org/dicomweb/">DICOMweb</a>.</p>
 </div>
 
 
 <div align="center">
-  <a href="https://docs.ohif.org/"><strong>Read The Docs</strong></a>
+  <a href="https://docs.ohif.org/"><strong>Read The Docs</strong></a> |
+  <a href="https://github.com/OHIF/Viewers/tree/master/docs/latest">Edit the docs</a>
 </div>
 <div align="center">
   <a href="https://viewer.ohif.org/">Live Demo</a> |
-  <a href="https://ui.ohif.org/">Component Library</a>
+  <a href="https://react.ohif.org/">Component Library</a>
 </div>
-<div align="center">
-  📰 <a href="https://ohif.org/news/"><strong>Join OHIF Newsletter</strong></a> 📰
-</div>
-<div align="center">
-  📰 <a href="https://ohif.org/news/"><strong>Join OHIF Newsletter</strong></a> 📰
-</div>
-
 
 
 <hr />
 
 [![NPM version][npm-version-image]][npm-url]
+[![NPM downloads][npm-downloads-image]][npm-url]
+[![Pulls][docker-pulls-img]][docker-image-url]
 [![MIT License][license-image]][license-url]
+[![FOSSA Status](https://app.fossa.io/api/projects/git%2Bgithub.com%2FOHIF%2FViewers.svg?type=shield)](https://app.fossa.io/projects/git%2Bgithub.com%2FOHIF%2FViewers?ref=badge_shield)
+
+[![Netlify Status][netlify-image]][netlify-url]
+[![CircleCI][circleci-image]][circleci-url]
+[![codecov][codecov-image]][codecov-url]
 [![This project is using Percy.io for visual regression testing.][percy-image]](percy-url)
-<!-- [![NPM downloads][npm-downloads-image]][npm-url] -->
-<!-- [![Pulls][docker-pulls-img]][docker-image-url] -->
-<!-- [![FOSSA Status](https://app.fossa.io/api/projects/git%2Bgithub.com%2FOHIF%2FViewers.svg?type=shield)](https://app.fossa.io/projects/git%2Bgithub.com%2FOHIF%2FViewers?ref=badge_shield) -->
-
-<!-- [![Netlify Status][netlify-image]][netlify-url] -->
-<!-- [![CircleCI][circleci-image]][circleci-url] -->
-<!-- [![codecov][codecov-image]][codecov-url] -->
-<!-- [![All Contributors](https://img.shields.io/badge/all_contributors-10-orange.svg?style=flat-square)](#contributors) -->
+[![All Contributors](https://img.shields.io/badge/all_contributors-10-orange.svg?style=flat-square)](#contributors)
 <!-- prettier-ignore-end -->
 
-
-|     |  | |
-| :-: | :---  | :--- |
-| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-measurements.webp?raw=true" alt="Measurement tracking" width="350"/> | Measurement Tracking | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5) |
-| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-segmentation.webp?raw=true" alt="Segmentations" width="350"/> | Labelmap Segmentations  | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.12.2.1107.5.2.32.35162.30000015050317233592200000046) |
-| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-ptct.webp?raw=true" alt="Hanging Protocols" width="350"/> | Fusion and Custom Hanging protocols  | [Demo](https://viewer.ohif.org/tmtv?StudyInstanceUIDs=1.3.6.1.4.1.14519.5.2.1.7009.2403.334240657131972136850343327463) |
-| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-volume-rendering.webp?raw=true" alt="Volume Rendering" width="350"/> | Volume Rendering  | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.6.1.4.1.25403.345050719074.3824.20170125095438.5&hangingprotocolId=mprAnd3DVolumeViewport) |
-| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-pdf.webp?raw=true" alt="PDF" width="350"/> | PDF  | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=2.25.317377619501274872606137091638706705333) |
-| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-rtstruct.webp?raw=true" alt="RTSTRUCT" width="350"/> | RT STRUCT  | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=1.3.6.1.4.1.5962.99.1.2968617883.1314880426.1493322302363.3.0) |
-| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-4d.webp?raw=true" alt="4D" width="350"/> | 4D  | [Demo](https://viewer.ohif.org/dynamic-volume?StudyInstanceUIDs=2.25.232704420736447710317909004159492840763) |
-| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/demo-video.webp?raw=true" alt="VIDEO" width="350"/> | Video  | [Demo](https://viewer.ohif.org/viewer?StudyInstanceUIDs=2.25.96975534054447904995905761963464388233) |
-| <img src="https://github.com/OHIF/Viewers/blob/master/platform/docs/docs/assets/img/microscopy.webp?raw=true" alt="microscopy" width="350"/> | Slide Microscopy  | [Demo](https://viewer.ohif.org/microscopy?StudyInstanceUIDs=2.25.141277760791347900862109212450152067508) |
-
 ## About
 
-The OHIF Viewer can retrieve
-and load images from most sources and formats, render sets in 2D, 3D, and
+The OHIF Medical Imaging Viewer is for viewing medical images. It can retrieve
+and load images from most sources and formats; render sets in 2D, 3D, and
 reconstructed representations; allows for the manipulation, annotation, and
 serialization of observations; supports internationalization, OpenID Connect,
 offline use, hotkeys, and many more features.
@@ -73,10 +54,10 @@ contributions of individuals, research groups, and commercial organizations.
 
 ### Built to Adapt
 
-After more than 8-years of integrating with many companies and organizations,
+After more than 5-years of integrating with many companies and organizations,
 The OHIF Viewer has been rebuilt from the ground up to better address the
 varying workflow and configuration needs of its many users. All of the Viewer's
-core features are built using its own extension system. The same extensibility
+core features are built using it's own extension system. The same extensibility
 that allows us to offer:
 
 - 2D and 3D medical image viewing
@@ -84,7 +65,6 @@ that allows us to offer:
 - Maximum Intensity Project (MIP)
 - Whole slide microscopy viewing
 - PDF and Dicom Structured Report rendering
-- Segmentation rendering as labelmaps and contours
 - User Access Control (UAC)
 - Context specific toolbar and side panel content
 - and many others
@@ -95,47 +75,65 @@ forking).
 
 ### Support
 
-- [Report a Bug 🐛](https://github.com/OHIF/Viewers/issues/new?assignees=&labels=Community%3A+Report+%3Abug%3A%2CAwaiting+Reproduction&projects=&template=bug-report.yml&title=%5BBug%5D+)
-- [Request a Feature 🚀](https://github.com/OHIF/Viewers/issues/new?assignees=&labels=Community%3A+Request+%3Ahand%3A&projects=&template=feature-request.yml&title=%5BFeature+Request%5D+)
-- [Ask a Question 🤗](community.ohif.org)
-- [Slack Channel](https://join.slack.com/t/cornerstonejs/shared_invite/zt-1r8xb2zau-dOxlD6jit3TN0Uwf928w9Q)
+We offer support through
+[GitHub Issues](https://github.com/OHIF/Viewers/issues/new/choose). You can:
 
-For commercial support, academic collaborations, and answers to common
-questions; please use [Get Support](https://ohif.org/get-support/) to contact
-us.
+- [Report a Bug 🐛](https://github.com/OHIF/Viewers/issues/new?assignees=&labels=Community%3A+Report+%3Abug%3A&template=---bug-report.md)
+- [Request a Feature 🚀](https://github.com/OHIF/Viewers/issues/new?assignees=&labels=Community%3A+Request+%3Ahand%3A&template=---feature-request.md)
+- [Ask a Question 🤗](https://github.com/OHIF/Viewers/issues/new?assignees=&labels=Community%3A+Question+%3Aquestion%3A&template=---support-question.md)
 
+For commercial support, academic collaberations, and answers to common
+questions; please read our
+[documented FAQ](https://docs.ohif.org/faq/index.html#does-ohif-offer-commercial-support).
+
+## Quick Start Deployment
+
+> This is only one of many ways to configure and deploy the OHIF Viewer. To
+> learn more about your options, and how to choose the best one for your
+> requirements, check out
+> [our deployment recipes and documentation](https://docs.ohif.org/deployment/).
+
+The fastest and easiest way to get started is to include the OHIF Viewer with a
+script tag. In practice, this is as simple as:
+
+- Including the following dependencies with script tags:
+  - [React](https://unpkg.com/react@16/umd/react.production.min.js)
+  - [React Dom](https://unpkg.com/react-dom@16/umd/react-dom.production.min.js)
+  - The [OHIF Viewer](https://unpkg.com/@ohif/viewer)
+- Have an element with an ID of `root` on the page
+- Configure the OHIF Viewer at `window.config`:
+
+```js
+window.config = {
+  routerBasename: '/',
+  servers: {
+    dicomWeb: [
+      {
+        name: 'DCM4CHEE',
+        qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
+        wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
+        qidoSupportsIncludeField: true,
+        imageRendering: 'wadors',
+        thumbnailRendering: 'wadors',
+      },
+    ],
+  },
+};
+```
+
+- Install the viewer: `window.OHIFViewer.installViewer(window.config);`
+
+This exact setup is demonstrated in this
+[CodeSandbox](https://codesandbox.io/s/viewer-script-tag-tprch) and in our
+[Embedding The Viewer](https://docs.ohif.org/deployment/recipes/embedded-viewer.html)
+deployment recipe.
 
 ## Developing
 
-### Branches
-
-#### `master` branch - The latest dev (beta) release
-
-- `master` - The latest dev release
-
-This is typically where the latest development happens. Code that is in the master branch has passed code reviews and automated tests, but it may not be deemed ready for production. This branch usually contains the most recent changes and features being worked on by the development team. It's often the starting point for creating feature branches (where new features are developed) and hotfix branches (for urgent fixes).
-
-Each package is tagged with beta version numbers, and published to npm such as `@ohif/ui@3.6.0-beta.1`
-
-### `release/*` branches - The latest stable releases
-Once the `master` branch code reaches a stable, release-ready state, we conduct a comprehensive code review and QA testing. Upon approval, we create a new release branch from `master`. These branches represent the latest stable version considered ready for production.
-
-For example, `release/3.5` is the branch for version 3.5.0, and `release/3.6` is for version 3.6.0. After each release, we wait a few days to ensure no critical bugs. If any are found, we fix them in the release branch and create a new release with a minor version bump, e.g., 3.5.1 in the `release/3.5` branch.
-
-Each package is tagged with version numbers and published to npm, such as `@ohif/ui@3.5.0`. Note that `master` is always ahead of the `release` branch. We publish docker builds for both beta and stable releases.
-
-Here is a schematic representation of our development workflow:
-
-![alt text](platform/docs/docs/assets/img/github-readme-branches-Jun2024.png)
-
-
-
-
-
 ### Requirements
 
-- [Yarn 1.20.0+](https://yarnpkg.com/en/docs/install)
-- [Node 18+](https://nodejs.org/en/)
+- [Yarn 1.17.3+](https://yarnpkg.com/en/docs/install)
+- [Node 10+](https://nodejs.org/en/)
 - Yarn Workspaces should be enabled on your machine:
   - `yarn config set workspaces-experimental true`
 
@@ -147,14 +145,7 @@ Here is a schematic representation of our development workflow:
 3. Navigate to the cloned project's directory
 4. Add this repo as a `remote` named `upstream`
    - `git remote add upstream https://github.com/OHIF/Viewers.git`
-5. `yarn install --frozen-lockfile` to restore dependencies and link projects
-
-:::danger
-In general run `yarn install` with the `--frozen-lockfile` flag to help avoid
-supply chain attacks by enforcing reproducible dependencies. That is, if the
-`yarn.lock` file is clean and does NOT reference compromised packages, then
-no compromised packages should land on your machine by using this flag.
-:::
+5. `yarn install` to restore dependencies and link projects
 
 #### To Develop
 
@@ -165,28 +156,30 @@ _From this repository's root directory:_
 yarn config set workspaces-experimental true
 
 # Restore dependencies
-yarn install --frozen-lockfile
+yarn install
 ```
 
 ## Commands
 
 These commands are available from the root directory. Each project directory
 also supports a number of commands that can be found in their respective
-`README.md` and `package.json` files.
+`README.md` and `project.json` files.
 
 | Yarn Commands                | Description                                                   |
 | ---------------------------- | ------------------------------------------------------------- |
 | **Develop**                  |                                                               |
-| `dev`              | Default development experience for Viewer                     |
-| `dev:fast`             | Our experimental fast dev mode that uses rsbuild instead of webpack                     |
+| `dev` or `start`             | Default development experience for Viewer                     |
+| `dev:project <package-name>` | Replace with `core`, `ui`, `i18n`, `cornerstone`, `vtk`, etc. |
 | `test:unit`                  | Jest multi-project test runner; overall coverage              |
 | **Deploy**                   |                                                               |
-| `build`\*                    | Builds production output for our PWA Viewer                   |  |
+| `build`\*                    | Builds production output for our PWA Viewer                   |
+| `build:package`\*            | Builds production `commonjs` output for our Viewer            |
+| `build:package-all`\*        | Builds commonjs bundles for all projects                      |
 
-\* - For more information on different builds, check out our [Deploy
+\* - For more information on our different builds, check out our [Deploy
 Docs][deployment-docs]
 
-## Project
+## Projects
 
 The OHIF Medical Image Viewing Platform is maintained as a
 [`monorepo`][monorepo]. This means that this repository, instead of containing a
@@ -195,60 +188,58 @@ you'll see the following:
 
 ```bash
 .
-├── extensions               #
-│   ├── _example             # Skeleton of example extension
-│   ├── default              # basic set of useful functionalities (datasources, panels, etc)
-│   ├── cornerstone       # image rendering and tools w/ Cornerstone3D
-│   ├── cornerstone-dicom-sr # DICOM Structured Report rendering and export
-│   ├── cornerstone-dicom-sr # DICOM Structured Report rendering and export
-│   ├── cornerstone-dicom-seg # DICOM Segmentation rendering and export
-│   ├── cornerstone-dicom-rt # DICOM RTSTRUCT rendering
-│   ├── cornerstone-microscopy # Whole Slide Microscopy rendering
-│   ├── dicom-pdf # PDF rendering
-│   ├── dicom-video # DICOM RESTful Services
-│   ├── measurement-tracking # Longitudinal measurement tracking
-│   ├── tmtv # Total Metabolic Tumor Volume (TMTV) calculation
-|
-
+├── extensions              #
+│   ├── _example            # Skeleton of example extension
+│   ├── cornerstone         # 2D images w/ Cornerstone.js
+│   ├── dicom-html          # Structured Reports as HTML in viewport
+│   ├── dicom-microscopy    # Whole slide microscopy viewing
+│   ├── dicom-pdf           # View DICOM wrapped PDFs in viewport
+│   └── vtk                 # MPR and Volume support w/ VTK.js
 │
-├── modes                    #
-│   ├── _example             # Skeleton of example mode
-│   ├── basic-dev-mode       # Basic development mode
-│   ├── longitudinal         # Longitudinal mode (measurement tracking)
-│   ├── tmtv       # Total Metabolic Tumor Volume (TMTV) calculation mode
-│   └── microscopy          # Whole Slide Microscopy mode
+├── platform                #
+│   ├── core                # Business Logic
+│   ├── i18n                # Internationalization Support
+│   ├── ui                  # React component library
+│   └── viewer              # Connects platform and extension projects
 │
-├── platform                 #
-│   ├── core                 # Business Logic
-│   ├── i18n                 # Internationalization Support
-│   ├── ui                   # React component library
-│   ├── docs                 # Documentation
-│   └── viewer               # Connects platform and extension projects
-│
-├── ...                      # misc. shared configuration
-├── lerna.json               # MonoRepo (Lerna) settings
-├── package.json             # Shared devDependencies and commands
-└── README.md                # This file
+├── ...                     # misc. shared configuration
+├── lerna.json              # MonoRepo (Lerna) settings
+├── package.json            # Shared devDependencies and commands
+└── README.md               # This file
 ```
 
+Want to better understand why and how we've structured this repository? Read
+more about it in our [Architecture Documentation][ohif-architecture].
+
+### Platform
+
+These projects comprise the
+
+| Name                            | Description                                                                                          | Links             |
+| ------------------------------- | ---------------------------------------------------------------------------------------------------- | ----------------- |
+| [@ohif/core][platform-core]     | Business logic and classes that model the data, services, and extensions that are framework agnostic | [NPM][core-npm]   |
+| [@ohif/i18n][platform-i18n]     | Language files and small API for wrapping component/ui text for translations                         | [NPM][i18n-npm]   |
+| [@ohif/viewer][platform-viewer] | The OHIF Viewer. Where we consume and configure all platform library's and extensions                | [NPM][viewer-npm] |
+| [@ohif/ui][platform-ui]         | Reusable React components we consume and compose to build our Viewer's UI                            | [NPM][ui-npm]     |
+
+### Extensions
+
+This is a list of Extensions maintained by the OHIF Core team. It's possible to
+customize and configure these extensions, and you can even create your own. You
+can [read more about extensions here][ohif-extensions].
+
+| Name                                                           | Description                                             | Links                  |
+| -------------------------------------------------------------- | ------------------------------------------------------- | ---------------------- |
+| [@ohif/extension-cornestone][extension-cornerstone]            | 2D image viewing, annotation, and segementation tools   | [NPM][cornerstone-npm] |
+| [@ohif/extension-dicom-html][extension-dicom-html]             | Support for viewing DICOM SR as rendered HTML           | [NPM][html-npm]        |
+| [@ohif/extension-dicom-microscopy][extension-dicom-microscopy] | Whole slide microscopy viewing                          | [NPM][microscopy-npm]  |
+| [@ohif/extension-dicom-pdf][extension-dicom-pdf]               | View DICOM wrapped PDFs in a viewport                   | [NPM][pdf-npm]         |
+| [@ohif/extension-vtk][extension-vtk]                           | Volume rendering, reconstruction, and 3D visualizations | [NPM][vtk-npm]         |
+
 ## Acknowledgments
 
 To acknowledge the OHIF Viewer in an academic publication, please cite
 
-> _Open Health Imaging Foundation Viewer: An Extensible Open-Source Framework
-> for Building Web-Based Imaging Applications to Support Cancer Research_
->
-> Erik Ziegler, Trinity Urban, Danny Brown, James Petts, Steve D. Pieper, Rob
-> Lewis, Chris Hafey, and Gordon J. Harris
->
-> _JCO Clinical Cancer Informatics_, no. 4 (2020), 336-345, DOI:
-> [10.1200/CCI.19.00131](https://www.doi.org/10.1200/CCI.19.00131)
->
-> Open-Access on Pubmed Central:
-> https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7259879/
-
-or, for v1, please cite:
-
 > _LesionTracker: Extensible Open-Source Zero-Footprint Web Viewer for Cancer
 > Imaging Research and Clinical Trials_
 >
@@ -259,7 +250,7 @@ or, for v1, please cite:
 > [10.1158/0008-5472.CAN-17-0334](https://www.doi.org/10.1158/0008-5472.CAN-17-0334)
 
 **Note:** If you use or find this repository helpful, please take the time to
-star this repository on GitHub. This is an easy way for us to assess adoption
+star this repository on Github. This is an easy way for us to assess adoption
 and it can help us obtain future funding for the project.
 
 This work is supported primarily by the National Institutes of Health, National
@@ -267,11 +258,32 @@ Cancer Institute, Informatics Technology for Cancer Research (ITCR) program,
 under a
 [grant to Dr. Gordon Harris at Massachusetts General Hospital (U24 CA199460)](https://projectreporter.nih.gov/project_info_description.cfm?aid=8971104).
 
-[NCI Imaging Data Commons (IDC) project](https://imaging.datacommons.cancer.gov/) supported the development of new features and bug fixes marked with ["IDC:priority"](https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3AIDC%3Apriority),
-["IDC:candidate"](https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3AIDC%3Acandidate) or ["IDC:collaboration"](https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3AIDC%3Acollaboration). NCI Imaging Data Commons is supported by contract number 19X037Q from
-Leidos Biomedical Research under Task Order HHSN26100071 from NCI. [IDC Viewer](https://learn.canceridc.dev/portal/visualization) is a customized version of the OHIF Viewer.
+## Projects that contributed to OHIF Viewer
 
-This project is tested with BrowserStack. Thank you for supporting open-source!
+The following is a (partial) list of projects that contributed resources towards
+development of OHIF Viewer:
+
+- [NCI Imaging Data Commons (IDC) project](https://imaging.datacommons.cancer.gov/)
+  supported development of new features and bug fixes marked with
+  ["IDC:priority"](https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3AIDC%3Apriority),
+  ["IDC:candidate"](https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3AIDC%3Acandidate)
+  or
+  ["IDC:collaboration"](https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3AIDC%3Acollaboration).
+  NCI Imaging Data Commons is supported by the contract number 19X037Q from
+  Leidos Biomedical Research under Task Order HHSN26100071 from NCI.
+  [IDC Viewer](https://learn.canceridc.dev/portal/visualization) is a customized
+  version of the OHIF Viewer.
+  
+### Research notice
+Please note that this repository is participating in a study into sustainability
+ of open source projects. Data will be gathered about this repository for
+ approximately the next 12 months, starting from June 2021.
+
+Data collected will include number of contributors, number of PRs, time taken to
+ close/merge these PRs, and issues closed.
+
+For more information, please visit
+[our informational page](https://sustainable-open-science-and-software.github.io/) or download our [participant information sheet](https://sustainable-open-science-and-software.github.io/assets/PIS_sustainable_software.pdf).
 
 ## License
 
@@ -297,11 +309,11 @@ MIT © [OHIF](https://github.com/OHIF)
 [semantic-image]: https://img.shields.io/badge/%20%20%F0%9F%93%A6%F0%9F%9A%80-semantic--release-e10079.svg
 [semantic-url]: https://github.com/semantic-release/semantic-release
 <!-- ROW -->
-[npm-url]: https://npmjs.org/package/@ohif/app
-[npm-downloads-image]: https://img.shields.io/npm/dm/@ohif/app.svg?style=flat-square
-[npm-version-image]: https://img.shields.io/npm/v/@ohif/app.svg?style=flat-square
+[npm-url]: https://npmjs.org/package/@ohif/viewer
+[npm-downloads-image]: https://img.shields.io/npm/dm/@ohif/viewer.svg?style=flat-square
+[npm-version-image]: https://img.shields.io/npm/v/@ohif/viewer.svg?style=flat-square
 [docker-pulls-img]: https://img.shields.io/docker/pulls/ohif/viewer.svg?style=flat-square
-[docker-image-url]: https://hub.docker.com/r/ohif/app
+[docker-image-url]: https://hub.docker.com/r/ohif/viewer
 [license-image]: https://img.shields.io/badge/license-MIT-blue.svg?style=flat-square
 [license-url]: LICENSE
 [percy-image]: https://percy.io/static/images/percy-badge.svg
@@ -315,7 +327,7 @@ MIT © [OHIF](https://github.com/OHIF)
 [deployment-docs]: https://docs.ohif.org/deployment/
 [react-url]: https://reactjs.org/
 [pwa-url]: https://developers.google.com/web/progressive-web-apps/
-[ohif-viewer-url]: https://www.npmjs.com/package/@ohif/app
+[ohif-viewer-url]: https://www.npmjs.com/package/@ohif/viewer
 [configuration-url]: https://docs.ohif.org/configuring/
 [extensions-url]: https://docs.ohif.org/extensions/
 <!-- Platform -->
@@ -325,8 +337,8 @@ MIT © [OHIF](https://github.com/OHIF)
 [i18n-npm]: https://www.npmjs.com/package/@ohif/i18n
 [platform-ui]: platform/ui/README.md
 [ui-npm]: https://www.npmjs.com/package/@ohif/ui
-[platform-viewer]: platform/app/README.md
-[viewer-npm]: https://www.npmjs.com/package/@ohif/app
+[platform-viewer]: platform/viewer/README.md
+[viewer-npm]: https://www.npmjs.com/package/@ohif/viewer
 <!-- Extensions -->
 [extension-cornerstone]: extensions/cornerstone/README.md
 [cornerstone-npm]: https://www.npmjs.com/package/@ohif/extension-cornerstone
@@ -340,4 +352,4 @@ MIT © [OHIF](https://github.com/OHIF)
 [vtk-npm]: https://www.npmjs.com/package/@ohif/extension-vtk
 <!-- prettier-ignore-end -->
 
-[![FOSSA Status](https://app.fossa.com/api/projects/git%2Bgithub.com%2FOHIF%2FViewers.svg?type=large&issueType=license)](https://app.fossa.com/projects/git%2Bgithub.com%2FOHIF%2FViewers?ref=badge_large&issueType=license)
+[![FOSSA Status](https://app.fossa.io/api/projects/git%2Bgithub.com%2FOHIF%2FViewers.svg?type=large)](https://app.fossa.io/projects/git%2Bgithub.com%2FOHIF%2FViewers?ref=badge_large)

addOns/README.md

@@ -1,3 +0,0 @@
-# External Dependencies
-
-This module contains optional dependencies and external dependencies for including in OHIF, such as the DICOM Microscopy Viewer component.  

addOns/externals/devDependencies/package.json

@@ -1,95 +0,0 @@
-{
-  "name": "@externals/devDependencies",
-  "description": "External dev dependencies - put dev build dependencies here",
-  "version": "3.13.0-beta.10",
-  "license": "MIT",
-  "private": true,
-  "engines": {
-    "node": ">=12",
-    "yarn": ">=1.19.1"
-  },
-  "dependencies": {
-    "@babel/runtime": "7.28.2",
-    "@kitware/vtk.js": "34.15.1",
-    "clsx": "2.1.1",
-    "core-js": "3.45.1",
-    "moment": "2.30.1"
-  },
-  "peerDependencies": {
-    "react": "18.3.1",
-    "react-dom": "18.3.1"
-  },
-  "devDependencies": {
-    "@babel/eslint-parser": "7.28.0",
-    "@pmmmwh/react-refresh-webpack-plugin": "0.5.17",
-    "@rsbuild/core": "1.5.1",
-    "@rsbuild/plugin-node-polyfill": "1.4.2",
-    "@rsbuild/plugin-react": "1.4.0",
-    "@svgr/webpack": "8.1.0",
-    "@swc/helpers": "0.5.17",
-    "@types/jest": "27.5.2",
-    "@typescript-eslint/eslint-plugin": "6.21.0",
-    "@typescript-eslint/parser": "6.21.0",
-    "autoprefixer": "10.4.21",
-    "babel-loader": "8.4.1",
-    "babel-plugin-module-resolver": "5.0.2",
-    "clean-webpack-plugin": "3.0.0",
-    "copy-webpack-plugin": "9.1.0",
-    "cross-env": "7.0.3",
-    "css-loader": "6.11.0",
-    "dotenv": "8.6.0",
-    "eslint": "8.57.1",
-    "eslint-config-prettier": "7.2.0",
-    "eslint-config-react-app": "6.0.0",
-    "eslint-plugin-cypress": "2.15.2",
-    "eslint-plugin-flowtype": "7.0.0",
-    "eslint-plugin-import": "2.32.0",
-    "eslint-plugin-jsx-a11y": "6.10.2",
-    "eslint-plugin-node": "11.1.0",
-    "eslint-plugin-prettier": "5.5.1",
-    "eslint-plugin-promise": "5.2.0",
-    "eslint-plugin-react": "7.37.5",
-    "eslint-plugin-react-hooks": "4.6.2",
-    "eslint-plugin-tsdoc": "0.2.17",
-    "eslint-webpack-plugin": "2.7.0",
-    "execa": "8.0.1",
-    "extract-css-chunks-webpack-plugin": "4.10.0",
-    "html-webpack-plugin": "5.6.3",
-    "husky": "3.1.0",
-    "jest": "29.7.0",
-    "jest-canvas-mock": "2.5.2",
-    "jest-environment-jsdom": "29.7.0",
-    "jest-junit": "6.4.0",
-    "lerna": "7.4.2",
-    "lint-staged": "9.5.0",
-    "mini-css-extract-plugin": "2.9.2",
-    "optimize-css-assets-webpack-plugin": "6.0.1",
-    "postcss": "8.5.6",
-    "postcss-import": "14.1.0",
-    "postcss-loader": "6.2.1",
-    "postcss-preset-env": "7.8.3",
-    "prettier": "3.6.2",
-    "prettier-plugin-tailwindcss": "0.6.9",
-    "react-refresh": "0.14.2",
-    "semver": "7.7.2",
-    "serve": "14.2.4",
-    "shader-loader": "1.3.1",
-    "shx": "0.3.4",
-    "source-map-loader": "4.0.2",
-    "style-loader": "1.3.0",
-    "terser-webpack-plugin": "5.3.14",
-    "typescript": "5.5.4",
-    "unused-webpack-plugin": "2.4.0",
-    "webpack": "5.95.0",
-    "webpack-bundle-analyzer": "4.10.2",
-    "webpack-cli": "5.1.4",
-    "webpack-dev-server": "5.2.2",
-    "webpack-hot-middleware": "2.26.1",
-    "webpack-merge": "5.10.0",
-    "workbox-webpack-plugin": "6.6.1",
-    "worker-loader": "3.0.8"
-  },
-  "scripts": {
-    "build": "Included as direct dependency"
-  }
-}

addOns/externals/dicom-microscopy-viewer/package.json

@@ -1,9 +0,0 @@
-{
-  "name": "@externals/dicom-microscopy-viewer",
-  "description": "External reference to dicom-microscopy-viewer",
-  "version": "3.13.0-beta.10",
-  "license": "MIT",
-  "dependencies": {
-    "dicom-microscopy-viewer": "0.48.17"
-  }
-}

addOns/package.json

@@ -1,50 +0,0 @@
-{
-  "name": "ohif-monorepo-root",
-  "private": true,
-  "packageManager": "yarn@1.22.22",
-  "workspaces": {
-    "packages": [
-      "../platform/i18n",
-      "../platform/core",
-      "../platform/ui",
-      "../platform/ui-next",
-      "../platform/app",
-      "../extensions/*",
-      "../modes/*",
-      "../addOns/externals/*"
-    ],
-    "nohoist": [
-      "**/html-minifier-terser"
-    ]
-  },
-  "scripts": {
-    "preinstall": "cd .. && node preinstall.js"
-  },
-  "devDependencies": {
-    "@babel/core": "7.28.0",
-    "@babel/plugin-transform-class-properties": "7.27.1",
-    "@babel/plugin-transform-object-rest-spread": "7.28.0",
-    "@babel/plugin-transform-private-methods": "7.27.1",
-    "@babel/plugin-transform-private-property-in-object": "7.27.1",
-    "@babel/plugin-syntax-dynamic-import": "7.8.3",
-    "@babel/plugin-transform-arrow-functions": "7.27.1",
-    "@babel/plugin-transform-regenerator": "7.28.1",
-    "@babel/plugin-transform-runtime": "7.28.0",
-    "@babel/plugin-transform-typescript": "7.28.0",
-    "@babel/preset-env": "7.28.0",
-    "@babel/preset-react": "7.27.1",
-    "@babel/preset-typescript": "7.27.1"
-  },
-  "resolutions": {
-    "**/@babel/runtime": "7.28.2",
-    "commander": "8.3.0",
-    "dcmjs": "0.49.4",
-    "dicomweb-client": "0.10.4",
-    "nth-check": "2.1.1",
-    "trim-newlines": "5.0.0",
-    "glob-parent": "6.0.2",
-    "trim": "1.0.1",
-    "package-json": "8.1.1",
-    "typescript": "5.5.4"
-  }
-}

babel.config.js

@@ -1,14 +1,10 @@
+const aliases = require('./aliases.config');
+const path = require('path');
+
 // https://babeljs.io/docs/en/options#babelrcroots
 module.exports = {
-  babelrcRoots: ['./platform/*', './extensions/*', './modes/*'],
-  presets: ['@babel/preset-env', '@babel/preset-react', '@babel/preset-typescript'],
-  plugins: [
-    ['@babel/plugin-transform-class-properties', { loose: true }],
-    '@babel/plugin-transform-typescript',
-    ['@babel/plugin-transform-private-property-in-object', { loose: true }],
-    ['@babel/plugin-transform-private-methods', { loose: true }],
-    '@babel/plugin-transform-class-static-block',
-  ],
+  babelrcRoots: ['./platform/*', './extensions/*'],
+  plugins: ['inline-react-svg', '@babel/plugin-proposal-class-properties'],
   env: {
     test: {
       presets: [
@@ -18,24 +14,15 @@ module.exports = {
           {
             modules: 'commonjs',
             debug: false,
-            targets: { node: 'current' },
-            bugfixes: true,
           },
         ],
         '@babel/preset-react',
-        '@babel/preset-typescript',
       ],
       plugins: [
-        'babel-plugin-istanbul',
-        '@babel/plugin-transform-object-rest-spread',
+        '@babel/plugin-proposal-object-rest-spread',
         '@babel/plugin-syntax-dynamic-import',
         '@babel/plugin-transform-regenerator',
-        '@babel/transform-destructuring',
         '@babel/plugin-transform-runtime',
-        '@babel/plugin-transform-typescript',
-        '@babel/plugin-transform-class-static-block',
-        '@babel/plugin-transform-for-of',
-        ['babel-plugin-transform-import-meta', { module: 'ES6' }],
       ],
     },
     production: {
@@ -43,7 +30,6 @@ module.exports = {
         // WebPack handles ES6 --> Target Syntax
         ['@babel/preset-env', { modules: false }],
         '@babel/preset-react',
-        '@babel/preset-typescript',
       ],
       ignore: ['**/*.test.jsx', '**/*.test.js', '__snapshots__', '__tests__'],
     },
@@ -52,9 +38,26 @@ module.exports = {
         // WebPack handles ES6 --> Target Syntax
         ['@babel/preset-env', { modules: false }],
         '@babel/preset-react',
-        '@babel/preset-typescript',
       ],
+      plugins: ['react-hot-loader/babel'],
       ignore: ['**/*.test.jsx', '**/*.test.js', '__snapshots__', '__tests__'],
     },
   },
 };
+
+// TODO: Plugins; Aliases
+// We don't currently use aliases, but this is a nice snippet that would help
+// [
+//   'module-resolver',
+//   {
+//     // https://github.com/tleunen/babel-plugin-module-resolver/issues/338
+//     // There seem to be a bug with module-resolver with a mono-repo setup:
+//     // It doesn't resolve paths correctly when using root/alias combo, so we
+//     // use this function instead.
+//     resolvePath(sourcePath, currentFile, opts) {
+//       // This will return undefined if aliases has no key for the sourcePath,
+//       // in which case module-resolver will fallback on its default behaviour.
+//       return aliases[sourcePath];
+//     },
+//   },
+// ],

build-and-publish-docs.sh

@@ -0,0 +1,64 @@
+#!/bin/bash
+
+# Set directory to location of this script
+# https://stackoverflow.com/a/3355423/1867984
+cd "$(dirname "$0")"
+
+yarn -v
+node -v
+
+echo 'Installing Gitbook CLI'
+yarn global add gitbook-cli
+
+echo 'Running Gitbook installation'
+
+# Generate all version's GitBook output
+# For each directory in /docs ...
+cd ./../docs/
+for D in *; do
+    if [ -d "${D}" ]; then
+
+			echo "Generating output for: ${D}"
+			cd "${D}"
+
+			# Clear previous output, generate new
+			rm -rf _book
+			gitbook install
+			gitbook build
+
+			cd ..
+
+		fi
+done
+
+# Move CNAME File into `latest`
+cp CNAME ./latest/_book/CNAME
+
+# Create a history folder in our latest version's output
+mkdir ./latest/_book/history
+
+# Move each version's files to latest's history folder
+for D in *; do
+	if [ -d "${D}" ]; then
+		if [ "${D}" == v* ] ; then
+
+			echo "Moving ${D} to the latest version's history folder"
+
+			mkdir "./latest/_book/history/${D}"
+			cp -v -r "./${D}/_book"/* "./latest/_book/history/${D}"
+
+		fi
+	fi
+done
+
+# Back to repo root
+cd ..
+
+echo "Done generating documentation output"
+echo 'PUBLISHING'
+
+./node_modules/.bin/gh-pages \
+  --silent \
+  --repo https://$GITHUB_TOKEN@github.com/OHIF/Viewers.git \
+  --message 'Autogenerated Message: [ci skip]' \
+	--dist docs/latest/_book

bunfig.toml

@@ -1,2 +0,0 @@
-[install]
-frozenLockfile = true

bunfig.update-lockfile.toml

@@ -1,2 +0,0 @@
-[install]
-frozenLockfile = false

commit.txt

@@ -1 +0,0 @@
-baef707e46fd76b50f8b510b45da64e12d71ed0e

docs/.gitignore

@@ -0,0 +1 @@
+_book/

docs/CNAME

@@ -0,0 +1 @@
+docs.ohif.org

docs/README.md

@@ -0,0 +1,46 @@
+# How To: Documentation Step-by-Step
+
+We use [GitBook](https://www.gitbook.com/) to create our documentation. It primarily uses markdown, html, css, js, misc. plugins, and configuration to generate high quality, easy to read, and easy to maintain documentation.
+
+## Getting Started
+
+_Requirements:_
+
+Make sure you have the [`gitbook-cli`](https://www.npmjs.com/package/gitbook-cli) installed globally:
+
+> `npm install -g gitbook-cli`
+
+### Editing and Previewing Changes
+
+Currently, you can only edit and preview a single "book" at a time. We maintain one "book" per API major version. You can find each version's book at:
+
+_Past Versions:_
+
+- Template:
+  - `<project-root>/docs/v<versionNumber>`
+- Examples:
+  - `/docs/v1`
+  - `/docs/v2`
+
+_Latest Version:_
+
+The latest version will always be located in `/docs/latest`
+
+_Live Preview:_
+
+In your terminal / command prompt:
+
+```bash
+cd /docs/latest
+gitbook install
+gitbook serve
+```
+
+Which should generate output like:
+
+> starting server...
+> serving book on http://localhost:4000
+
+Navigating to the the provided URL will show a preview of what the generated book should look like. Any edits you make to the book's markdown files should automatically update in your browser.
+
+### Publishing

docs/_redirects

@@ -0,0 +1,3 @@
+# Netlify redirects
+# SPA rules for our docs
+/*    /index.html   200

docs/latest/README.md

@@ -0,0 +1,54 @@
+<div class='row'>
+	<div class='column' style='text-align: right; padding: 0 20px'>
+		<strong>Looking for a Live Demo?</strong>
+		<a href="http://viewer.ohif.org/">Preview The OHIF Viewer</a>
+	</div>
+	<div class='column' style='text-align: left; padding: 0 20px'>
+		<a href="https://www.netlify.com">
+		  <img src="https://www.netlify.com/img/global/badges/netlify-color-bg.svg"/>
+		</a>
+	</div>
+</div>
+
+> ATTENTION! You are looking at the docs for the `React` version of the OHIF
+> Viewer. If you're looking for the `Meteor` version's documentation (now
+> deprecated), select it's version from the dropdown box in the top left corner
+> of this page.
+
+# Introduction
+
+The [Open Health Imaging Foundation][ohif-org] (OHIF) Viewer is an open source,
+web-based, medical imaging viewer. It can be configured to connect to Image
+Archives that support [DicomWeb][dicom-web], and offers support for mapping to
+proprietary API formats. OHIF maintained extensions add support for viewing,
+annotating, and reporting on DICOM images in 2D (slices) and 3D (volumes).
+
+![OHIF Viewer Screenshot](../assets/img/viewer.png)
+
+<center><i>The <strong>OHIF Viewer</strong>: A general purpose DICOM Viewer (<a href="http://viewer.ohif.org/">Live Demo</a>)</center>
+
+The Open Health Imaging Foundation intends to provide a simple general purpose
+DICOM Viewer which can be easily extended for specific uses. If you find
+yourself unable to extend the viewer for your purposes, please reach out via our
+[GitHub issues][gh-issues]. We are actively seeking feedback on ways to improve
+our integration and extension points.
+
+## Where to next?
+
+Check out these helpful links:
+
+- Ready to dive into some code? Check out our
+  [Getting Started Guide](./development/getting-started.md).
+- We're an active, vibrant community.
+  [Learn how you can be more involved.](./development/contributing.md)
+- Feeling lost? Read our [help page](./help.md).
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[ohif-org]: http://www.ohif.org
+[dicom-web]: https://en.wikipedia.org/wiki/DICOMweb
+[gh-issues]: https://github.com/OHIF/Viewers/issues
+<!-- prettier-ignore-end -->

docs/latest/SUMMARY.md

@@ -0,0 +1,61 @@
+# OHIF Viewers
+
+- [Our Process](our-process.md)
+- Development
+  - [Getting Started](development/getting-started.md)
+  - [Contributing](development/contributing.md)
+  - [Continuous Integration](development/continous-integration.md)
+  - [Testing](development/testing.md)
+- [Configuring](configuring/index.md)
+  - [Data Source](configuring/data-source.md)
+
+---
+
+- [Architecture](architecture/index.md)
+- [Viewer](viewer/index.md)
+  - [Configuration](viewer/configuration.md)
+  - [Themeing](viewer/themeing.md)
+  - [Internationalization](viewer/internationalization.md)
+- [Extensions](extensions/index.md)
+  - [Registering](extensions/index.md#registering-an-extension)
+  - [Lifecycle Hooks](extensions/index.md#lifecycle-hooks)
+    - [preRegistration](extensions/lifecycle/pre-registration.md)
+  - [Modules](extensions/index.md#modules)
+    - [Commands](extensions/modules/commands.md)
+    - [Panel](extensions/modules/panel.md)
+    - [SOP Class Handler](extensions/modules/sop-class-handler.md)
+    - [Toolbar](extensions/modules/toolbar.md)
+    - [Viewport](extensions/modules/viewport.md)
+  - [Contexts](extensions/index.md#contexts)
+  - [ExtensionManager](extensions/index.md#extensionmanager)
+  - [OHIF Maintained](extensions/index.md#maintained-extensions)
+- [Services](services/index.md)
+  - [Default](services/default/index.md)
+  - [UI](services/ui/index.md)
+    - [Dialog Service](services/ui/ui-dialog-service.md)
+    - [Modal Service](services/ui/ui-modal-service.md)
+    - [Notification Service](services/ui/ui-notification-service.md)
+
+---
+
+- [Deployment](deployment/index.md)
+  - [Embedded](deployment/index.md#embedded-viewer)
+  - [Stand-alone](deployment/index.md#stand-alone-viewer)
+  - [Data](deployment/index.md#data)
+- Recipes
+  - Script Include
+    - [Embedding the Viewer](deployment/recipes/embedded-viewer.md)
+  - Stand-Alone
+    - [Build for Production](deployment/recipes/build-for-production.md)
+    - [Static](deployment/recipes/static-assets.md)
+    - [Nginx + Image Archive](deployment/recipes/nginx--image-archive.md)
+    - [User Account Control](deployment/recipes/user-account-control.md)
+    - [Google Cloud Healthcare](connecting-to-image-archives/google-cloud-healthcare.md)
+
+---
+
+- [FAQ](faq/index.md)
+  - [Scope of Project](faq/scope-of-project.md)
+  - [Browser Support](faq/browser-support.md)
+  - [PWA vs Packaged](faq/pwa-vs-packaged.md)
+- [Help](help.md)

docs/latest/architecture/index.md

@@ -0,0 +1,153 @@
+# Architecture
+
+Looking to extend your instance of the OHIF Viewer? Want learn how to reuse _a
+portion_ of the Viewer in your own application? Or maybe you want to get
+involved and draft or suggest a new feature? Regardless, you're in the right
+place!
+
+The OHIF Viewer aims to be decoupled, configurable, and extensible; while this
+allows our code to be used in more ways, it also increases complexity. Below, we
+aim to demistify that complexity by providing insight into how our Viewer is
+architected, and the role each of it's dependent libraries plays.
+
+- [Overview](#overview)
+- [Business Logic](#business-logic)
+- [Component Library](#react-component-library)
+- [Extensions & Configuration](#extensions--configuration)
+- [Common Questions](#common-questions)
+
+## Overview
+
+The [OHIF Medical Image Viewing Platform][viewers-project] is maintained as a
+[`monorepo`][monorepo]. This means that this repository, instead of containing a
+single project, contains many projects. If you explore our project structure,
+you'll see the following:
+
+```bash
+.
+├── extensions
+│   ├── _example            # Skeleton of example extension
+│   ├── cornerstone         # 2D images w/ Cornerstone.js
+│   ├── dicom-html          # Structured Reports as HTML in viewport
+│   ├── dicom-microscopy    # Whole slide microscopy viewing
+│   ├── dicom-pdf           # View DICOM wrapped PDFs in viewport
+│   └── vtk                 # MPR and Volume support w/ VTK.js
+│
+├── platform
+│   ├── core                # Business Logic
+│   ├── i18n                # Internationalization Support
+│   ├── ui                  # React component library
+│   └── viewer              # Connects platform and extension projects
+│
+├── ...                     # misc. shared configuration
+├── lerna.json              # MonoRepo (Lerna) settings
+├── package.json            # Shared devDependencies and commands
+└── README.md
+```
+
+The `platform` directory contains the business logic library, component library,
+and the application library that combines them to create a powerful medical
+imaging viewer.
+
+The `extensions` directory contains many packages that can be registered with
+`@ohif/core`'s `ExtensionManager` to expand an application's supported features
+and functionality.
+
+![Architecture Diagram](../assets/img/architecture-diagram.png)
+
+<center><i>architecture diagram</i></center>
+
+This diagram is a conceptual illustration of how the Viewer is architected.
+
+1. (optional) `extensions` can be registered with `@ohif/core`'s
+   `ExtensionManager`
+2. `@ohif/core` provides bussiness logic and a way for `@ohif/viewer` to access
+   registered extensions
+3. The `@ohif/viewer` composes and provides data to components from our
+   component library (`@ohif/ui`)
+4. The `@ohif/viewer` can be built and served as a stand-alone PWA, or as an
+   embeddable package ([`@ohif/viewer`][viewer-npm])
+
+## Business Logic
+
+The [`@ohif/core`][core-github] project offers pre-packaged solutions for
+features common to Web-based medical imaging viewers. For example:
+
+- Hotkeys
+- DICOM Web requests
+- Hanging Protocols
+- Managing a study's measurements
+- Managing a study's DICOM metadata
+- [A flexible pattern for extensions](../extensions/index.md)
+- And many others
+
+It does this while remaining decoupled from any particular view library or
+rendering logic. While we use it to power our React Viewer, it can be used with
+Vue, React, Vanilla JS, or any number of other frameworks.
+
+## React Component Library
+
+[`@ohif/ui`][ui-github] is a React Component library that contains the reusable
+components that power the OHIF Viewer. It allows us to build, compose, and test
+components in isolation; easing the development process by reducing the need to
+stand-up a local PACS with test case data.
+
+Extension authors can also use these same components when building their
+extension's UI; allowing for a consistent look and feel with the rest of the
+application.
+
+[Check out our component library!](https://react.ohif.org/)
+
+## Extensions & Configuration
+
+While OHIF maintains several high value and commonly requested features in its
+own extensions, there are many instances where one may wish to further extend
+the viewer. Some common use cases include:
+
+- Adding AI/ML tools and insights
+- Custom workflows for guided diagnosis
+- Collecting specific annotations for training data or reports
+- Authentication and granular permissions
+- Teleconsultation workflow, image comments, and tracking
+- Adding surgical templating tools and reports
+- and many others
+
+We expose common integration points via [extensions](../extensions/index.md) to
+make this possible. The viewer and many of our own extensions also offer
+[configuration][configuration]. For a list of extensions maintained by OHIF,
+[check out this helpful table](../extensions/index.md#maintained-extensions).
+
+If you find yourself thinking "I wish the Viewer could do X", and you can't
+accomplish it with an extension today, create a GitHub issue! We're actively
+looking for ways to improve our extensibility ^\_^
+
+[Click here to read more about extensions!](../extensions/index.md)
+
+## Common Questions
+
+> When should I use the packaged source `@ohif/viewer` versus building a PWA
+> from the source?
+
+...
+
+> Can I create my own Viewer using Vue.js or Angular.js?
+
+You can, but you will not be able to leverage as much of the existing code and
+components. `@ohif/core` could still be used for business logic, and to provide
+a model for extensions. `@ohif/ui` would then become a guide for the components
+you would need to recreate.
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[monorepo]: https://github.com/OHIF/Viewers/issues/768
+[viewers-project]: https://github.com/OHIF/Viewers
+[viewer-npm]: https://www.npmjs.com/package/@ohif/viewer
+[pwa]: https://developers.google.com/web/progressive-web-apps/
+[configuration]: ../configuring/index.md
+[extensions]: ../extensions/index.md
+[core-github]: https://github.com/OHIF/viewers/platform/core
+[ui-github]: https://github.com/OHIF/Viewers/tree/master/platform/ui
+<!-- prettier-ignore-end -->