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Author SHA1 Message Date
ohif-bot 29eca3bd20 chore(version): Update package versions [skip ci] 2025-07-23 15:55:11 +00:00
ohif-bot 38bc497545 chore(version): version.json [skip ci] 2025-07-23 15:55:05 +00:00
Joe Boccanfuso d383be7c72 fix(security): Removed stylus package due to potential security vulnerability and we don't use it. (#5251) 2025-07-23 11:49:30 -04:00
Joe Boccanfuso d206cf9ba5 fix(security): Pin eslint-config-prettier and eslint-plugin-prettier versions. (#5246) 2025-07-22 12:02:57 -04:00
ohif-bot 1ad5acae9d chore(version): Update package versions [skip ci] 2025-06-09 15:06:36 +00:00
ohif-bot c19e32e0d1 chore(version): version.json [skip ci] 2025-06-09 15:06:30 +00:00
36813e0c2f chore: recovery 2 (#5014)
Co-authored-by: Dan Rukas <dan.rukas@gmail.com>
Co-authored-by: Tang Cheng <45505657+tctco@users.noreply.github.com>
2025-06-09 10:58:06 -04:00
ohif-bot 9a4a40468f chore(version): Update package versions [skip ci] 2025-04-11 20:02:21 +00:00
ohif-bot 466a867e6a chore(version): version.json [skip ci] 2025-04-11 20:02:14 +00:00
aaba8bf1b0 fix: make datasource selection work and UI fixes (#4952)
Co-authored-by: Pedro Köhler <pedrokohlerbh@gmail.com>
Co-authored-by: Dan Rukas <dan.rukas@gmail.com>
2025-04-11 15:57:29 -04:00
ohif-bot 0b6e9cba76 chore(version): Update package versions [skip ci] 2025-04-10 02:48:32 +00:00
ohif-bot 963664cb63 chore(version): version.json [skip ci] 2025-04-10 02:48:27 +00:00
sedghi 12fe1e107d chore: release 3p10 2025-04-09 22:41:26 -04:00
1522 changed files with 30786 additions and 66355 deletions

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+4 -7
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@@ -339,6 +339,7 @@ jobs:
resource_class: large
parallelism: 8
steps:
- install_bun
- run:
name: Install System Dependencies
command: |
@@ -352,11 +353,12 @@ jobs:
name: Export Display Variable
command: export DISPLAY=:99
- cypress/install:
install-command: yarn install --no-save
install-command: bun install --no-save
package-manager: yarn
- cypress/run-tests:
cypress-command: |
npx wait-on@latest http://localhost:3000 && cd platform/app && npx cypress run --record --parallel
start-command: yarn run test:data && yarn run test:e2e:serve
start-command: bun run test:data && bun run test:e2e:serve
DOCKER_MULTIARCH_MANIFEST:
<<: *defaults
@@ -455,13 +457,8 @@ workflows:
filters:
branches:
only: master
# - HOLD_FOR_APPROVAL:
# type: approval
# requires:
# - BUILD
- NPM_PUBLISH:
requires:
# - HOLD_FOR_APPROVAL
- BUILD
- DOCKER_BETA_PUBLISH:
requires:
-108
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@@ -1,108 +0,0 @@
name: Build and Deploy Docs
on:
push:
branches: [master]
env:
ACTIONS_STEP_DEBUG: true
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
build-and-deploy-docs:
timeout-minutes: 60
runs-on: ubuntu-latest
# Need permissions to read actions and pull requests
permissions:
actions: read
contents: read
pull-requests: read
steps:
- uses: actions/checkout@v4
- uses: oven-sh/setup-bun@v2
- uses: actions/setup-node@v4
with:
node-version: 20 # Or your desired Node version
- name: Install root dependencies
run: bun install --frozen-lockfile
# Removed Playwright tests and coverage generation steps
- name: Find PR and associated workflow run
id: find_pr_run
env:
GH_TOKEN: ${{ github.token }}
MERGE_COMMIT_SHA: ${{ github.sha }}
run: |
# Find the PR associated with the merge commit SHA
# Note: This relies on the merge commit being directly pushed to main
PR_DATA=$(gh pr list --state merged --search "$MERGE_COMMIT_SHA" --json number,headRefOid --jq '.[0]')
if [ -z "$PR_DATA" ]; then
echo "Could not find merged PR for commit $MERGE_COMMIT_SHA."
# Decide how to handle - fail, or maybe generate coverage now?
# For now, let's fail.
exit 1
fi
PR_HEAD_SHA=$(echo "$PR_DATA" | jq -r '.headRefOid')
PR_NUMBER=$(echo "$PR_DATA" | jq -r '.number')
echo "Found PR Number: $PR_NUMBER"
echo "Found PR Head SHA: $PR_HEAD_SHA"
# Find the latest workflow run ID for the playwright workflow on the PR head commit
# Uses the workflow file name 'playwright.yml'
# Remove the --status success flag to find any run
RUN_ID=$(gh run list --workflow playwright.yml --commit "$PR_HEAD_SHA" --event pull_request --json databaseId --jq '.[0].databaseId')
if [ -z "$RUN_ID" ]; then
echo "Could not find any 'playwright.yml' run for PR $PR_NUMBER (Head SHA: $PR_HEAD_SHA)."
# Decide how to handle - maybe try finding the artifact from the merge commit run if that exists?
# For now, let's fail.
exit 1
fi
echo "Found Run ID: $RUN_ID"
echo "run_id=$RUN_ID" >> $GITHUB_OUTPUT
- name: Download coverage artifact from PR run
env:
GH_TOKEN: ${{ github.token }}
run: |
mkdir -p ./coverage-artifact
gh run download ${{ steps.find_pr_run.outputs.run_id }} -n coverage-report-pr --dir ./coverage-artifact
# Check if download was successful (e.g., check if files exist)
if [ ! -f ./coverage-artifact/base.css ]; then
echo "Failed to download or find expected files in artifact 'coverage-report-pr' from run ${{ steps.find_pr_run.outputs.run_id }}."
exit 1
fi
echo "Artifact downloaded successfully."
- name: Install docs dependencies
run: cd platform/docs && bun install
- name: Copy coverage to docs static directory
run: |
# Copy files from the downloaded artifact directory
mkdir -p platform/docs/static/coverage
cp -r ./coverage-artifact/* platform/docs/static/coverage/
# Copy specific asset files from the downloaded artifact root to static root
cp ./coverage-artifact/base.css platform/docs/static/
cp ./coverage-artifact/block-navigation.js platform/docs/static/
cp ./coverage-artifact/prettify.css platform/docs/static/
cp ./coverage-artifact/prettify.js platform/docs/static/
cp ./coverage-artifact/favicon.png platform/docs/static/
cp ./coverage-artifact/sort-arrow-sprite.png platform/docs/static/
cp ./coverage-artifact/sorter.js platform/docs/static/
- name: Build docs
run: cd platform/docs && bun run build
- name: Deploy to Netlify
run: |
cd platform/docs
npx netlify-cli deploy --dir=./build --prod
env:
NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
-98
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@@ -1,98 +0,0 @@
# For most projects, this workflow file will not need changing; you simply need
# to commit it to your repository.
#
# You may wish to alter this file to override the set of languages analyzed,
# or to provide custom queries or build logic.
#
# ******** NOTE ********
# We have attempted to detect the languages in your repository. Please check
# the `language` matrix defined below to confirm you have the correct set of
# supported CodeQL languages.
#
name: "CodeQL Advanced"
on:
pull_request:
branches: [ "main" ]
schedule:
- cron: '15 1 * * 5'
jobs:
analyze:
name: Analyze (${{ matrix.language }})
# Runner size impacts CodeQL analysis time. To learn more, please see:
# - https://gh.io/recommended-hardware-resources-for-running-codeql
# - https://gh.io/supported-runners-and-hardware-resources
# - https://gh.io/using-larger-runners (GitHub.com only)
# Consider using larger runners or machines with greater resources for possible analysis time improvements.
runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
permissions:
# required for all workflows
security-events: write
# required to fetch internal or private CodeQL packs
packages: read
# only required for workflows in private repositories
actions: read
contents: read
strategy:
fail-fast: false
matrix:
include:
- language: actions
build-mode: none
- language: javascript-typescript
build-mode: none
# CodeQL supports the following values keywords for 'language': 'actions', 'c-cpp', 'csharp', 'go', 'java-kotlin', 'javascript-typescript', 'python', 'ruby', 'swift'
# Use `c-cpp` to analyze code written in C, C++ or both
# Use 'java-kotlin' to analyze code written in Java, Kotlin or both
# Use 'javascript-typescript' to analyze code written in JavaScript, TypeScript or both
# To learn more about changing the languages that are analyzed or customizing the build mode for your analysis,
# see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/customizing-your-advanced-setup-for-code-scanning.
# If you are analyzing a compiled language, you can modify the 'build-mode' for that language to customize how
# your codebase is analyzed, see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages
steps:
- name: Checkout repository
uses: actions/checkout@v4
# Add any setup steps before running the `github/codeql-action/init` action.
# This includes steps like installing compilers or runtimes (`actions/setup-node`
# or others). This is typically only required for manual builds.
# - name: Setup runtime (example)
# uses: actions/setup-example@v1
# Initializes the CodeQL tools for scanning.
- name: Initialize CodeQL
uses: github/codeql-action/init@v3
with:
languages: ${{ matrix.language }}
build-mode: ${{ matrix.build-mode }}
# If you wish to specify custom queries, you can do so here or in a config file.
# By default, queries listed here will override any specified in a config file.
# Prefix the list here with "+" to use these queries and those in the config file.
# For more details on CodeQL's query packs, refer to: https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
# queries: security-extended,security-and-quality
# If the analyze step fails for one of the languages you are analyzing with
# "We were unable to automatically build your code", modify the matrix above
# to set the build mode to "manual" for that language. Then modify this step
# to build your code.
# ℹ️ Command-line programs to run using the OS shell.
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
- if: matrix.build-mode == 'manual'
shell: bash
run: |
echo 'If you are using a "manual" build mode for one or more of the' \
'languages you are analyzing, replace this with the commands to build' \
'your code, for example:'
echo ' make bootstrap'
echo ' make release'
exit 1
- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v3
with:
category: "/language:${{matrix.language}}"
+52 -31
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@@ -1,54 +1,75 @@
name: Playwright Tests
on:
push:
branches: [main, master]
pull_request:
branches: [master]
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
branches: [main, master]
jobs:
playwright-tests:
timeout-minutes: 60
runs-on: self-hosted
runs-on: ubuntu-latest
container:
image: mcr.microsoft.com/playwright:v1.51.1-noble
strategy:
fail-fast: false
matrix:
node-version: [20]
shardIndex: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10]
shardTotal: [10]
steps:
- uses: actions/checkout@v4
- name: Install unzip
run: apt-get update && apt-get install -y unzip
- uses: oven-sh/setup-bun@v2
- uses: actions/setup-node@v4
with:
node-version: ${{ matrix.node-version }}
node-version: 20
- name: Install dependencies
run: bun install --frozen-lockfile
- name: Install Playwright browsers
run: npx playwright install
- name: Set up Git safe directory
run: git config --global --add safe.directory /__w/Viewers/Viewers
- name: Run Playwright tests
run: |
export NODE_OPTIONS="--max_old_space_size=10192"
bun run test:e2e:coverage
- name: Create directory of test results
if: ${{ !cancelled() }}
run: |
mkdir -p packaged-test-results
cp -r ./tests/test-results packaged-test-results/ || true
cp ./tests/playwright-report.json packaged-test-results/ || true
- name: Upload directory of test results artifact
NODE_OPTIONS="--max_old_space_size=8192" TEST_ENV=true bun x playwright test --shard=${{ matrix.shardIndex }}/${{ matrix.shardTotal }}
- name: Upload blob report to GitHub Actions Artifacts
if: ${{ !cancelled() }}
uses: actions/upload-artifact@v4
with:
name: playwright-results
path: packaged-test-results/
retention-days: 5
- name: create the coverage report
run: |
bun nyc report --reporter=lcov --reporter=text
- name: Upload the coverage report to GitHub Actions Artifacts
if: ${{ !cancelled() }}
name: blob-report-${{ matrix.shardIndex }}
path: blob-report
retention-days: 1
merge-reports:
if: ${{ !cancelled() }}
needs: [playwright-tests]
runs-on: ubuntu-latest
container:
image: mcr.microsoft.com/playwright:v1.48.1-focal
steps:
- name: Install unzip
run: apt-get update && apt-get install -y unzip
- uses: oven-sh/setup-bun@v2
- uses: actions/checkout@v4
- uses: actions/setup-node@v4
with:
node-version: 20
- name: Install dependencies
run: bun install --frozen-lockfile
- name: Set up Git safe directory
run: git config --global --add safe.directory /__w/Viewers/Viewers
- name: Download blob reports from GitHub Actions Artifacts
uses: actions/download-artifact@v4
with:
path: all-blob-reports
pattern: blob-report-*
merge-multiple: true
- name: Merge into HTML Report
run: bun x playwright merge-reports --reporter html ./all-blob-reports
- name: Upload HTML report
uses: actions/upload-artifact@v4
with:
name: coverage-report-pr
path: coverage
retention-days: 3
name: html-report--attempt-${{ github.run_attempt }}
path: playwright-report
retention-days: 14
+1 -7
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@@ -1,7 +1,7 @@
# Packages
node_modules
.cursor/
.nyc_output/
# Output
build
dist
@@ -13,7 +13,6 @@ coverage/
.yarn/
.nx/
addOns/yarn.lock
playwright-report/
# YALC (for Erik)
.yalc
@@ -58,8 +57,3 @@ tests/test-results/
tests/playwright-report/
/blob-report/
/playwright/.cache/
**/.claude/settings.local.json
# Backup files
*~
-24
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@@ -1,24 +0,0 @@
{
"extends": "@istanbuljs/nyc-config-typescript",
"instrument": true,
"sourceMap": true,
"cache": false,
"all": true,
"include": [
"platform/*/src/**/*.ts",
"platform/*/src/**/*.js",
"extensions/*/src/**/*.ts",
"extensions/*/src/**/*.js",
"modes/*/src/**/*.ts",
"modes/*/src/**/*.js"
],
"exclude": [
"**/*.spec.ts",
"**/*.test.ts",
"**/test/**",
"**/tests/**",
"**/examples/**",
"**/stories/**",
"platform/docs/**"
]
}
+1 -4
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@@ -82,7 +82,6 @@
"Reslices",
"roadmap",
"ROADMAPS",
"rtstruct",
"Segmentations",
"semibold",
"sitk",
@@ -110,8 +109,6 @@
"wado",
"wadors",
"wadouri",
"workerpool",
"Colorbar",
"Colorbars"
"workerpool"
]
}
+8 -25
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@@ -26,7 +26,6 @@ const ReactRefreshWebpackPlugin = require('@pmmmwh/react-refresh-webpack-plugin'
const NODE_ENV = process.env.NODE_ENV;
const QUICK_BUILD = process.env.QUICK_BUILD;
const BUILD_NUM = process.env.CIRCLE_BUILD_NUM || '0';
const IS_COVERAGE = process.env.COVERAGE === 'true';
// read from ../version.txt
const VERSION_NUMBER = fs.readFileSync(path.join(__dirname, '../version.txt'), 'utf8') || '';
@@ -101,30 +100,14 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
...(isProdBuild
? []
: [
...(IS_COVERAGE
? [
{
test: /\.[jt]sx?$/,
exclude: /node_modules/,
use: {
loader: 'babel-loader',
options: {
presets: ['@babel/preset-typescript', '@babel/preset-react'],
plugins: ['istanbul'],
},
},
},
]
: [
{
test: /\.[jt]sx?$/,
exclude: /node_modules/,
loader: 'babel-loader',
options: {
plugins: isProdBuild ? [] : ['react-refresh/babel'],
},
},
]),
{
test: /\.[jt]sx?$/,
exclude: /node_modules/,
loader: 'babel-loader',
options: {
plugins: isProdBuild ? [] : ['react-refresh/babel'],
},
},
]),
{
test: /\.svg?$/,
+7 -1271
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+1 -1
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@@ -98,7 +98,7 @@ COPY --from=builder /usr/src/app/platform/app/dist/dicom-microscopy-viewer /usr/
# In entrypoint.sh, app-config.js might be overwritten, so chmod it to be writeable.
# The nginx user cannot chmod it, so change to root.
USER root
RUN chown -R nginx:nginx /usr/share/nginx/html && chmod -R 666 /usr/share/nginx/html
RUN chown -R nginx:nginx /usr/share/nginx/html
USER nginx
ENTRYPOINT ["/usr/src/entrypoint.sh"]
CMD ["nginx", "-g", "daemon off;"]
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+8 -8
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@@ -1,7 +1,7 @@
{
"name": "@externals/devDependencies",
"description": "External dev dependencies - put dev build dependencies here",
"version": "3.12.0-beta.7",
"version": "3.10.4",
"license": "MIT",
"private": true,
"engines": {
@@ -20,17 +20,17 @@
"react-dom": "^18.3.1"
},
"devDependencies": {
"@babel/eslint-parser": "7.28.0",
"@pmmmwh/react-refresh-webpack-plugin": "^0.5.15",
"@rsbuild/core": "^1.3.16",
"@rsbuild/plugin-node-polyfill": "^1.3.0",
"@rsbuild/plugin-react": "^1.3.1",
"@rsbuild/core": "^1.1.13",
"@rsbuild/plugin-node-polyfill": "1.2.0",
"@rsbuild/plugin-react": "^1.1.0",
"@svgr/webpack": "^8.1.0",
"@swc/helpers": "^0.5.15",
"@types/jest": "^27.5.0",
"@typescript-eslint/eslint-plugin": "^6.3.0",
"@typescript-eslint/parser": "^6.3.0",
"autoprefixer": "^10.4.4",
"babel-eslint": "9.x",
"babel-loader": "^8.2.4",
"babel-plugin-module-resolver": "^5.0.0",
"clean-webpack-plugin": "^3.0.0",
@@ -80,10 +80,10 @@
"terser-webpack-plugin": "^5.1.4",
"typescript": "5.5.4",
"unused-webpack-plugin": "2.4.0",
"webpack": "^5.94.0",
"webpack": "5.94.0",
"webpack-bundle-analyzer": "^4.8.0",
"webpack-cli": "^5.0.1",
"webpack-dev-server": "5.2.2",
"webpack-cli": "^4.7.2",
"webpack-dev-server": "4.7.3",
"webpack-hot-middleware": "^2.25.0",
"webpack-merge": "^5.7.3",
"workbox-webpack-plugin": "^6.1.5",
+4 -972
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@@ -3,7 +3,7 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [3.12.0-beta.7](https://github.com/OHIF/Viewers/compare/v3.12.0-beta.6...v3.12.0-beta.7) (2025-08-15)
## [3.10.4](https://github.com/OHIF/Viewers/compare/v3.10.2...v3.10.4) (2025-07-23)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
@@ -11,7 +11,7 @@ See [Conventional Commits](https://conventionalcommits.org) for commit guideline
# [3.12.0-beta.6](https://github.com/OHIF/Viewers/compare/v3.12.0-beta.5...v3.12.0-beta.6) (2025-08-13)
## [3.10.2](https://github.com/OHIF/Viewers/compare/v3.10.1...v3.10.2) (2025-06-09)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
@@ -19,7 +19,7 @@ See [Conventional Commits](https://conventionalcommits.org) for commit guideline
# [3.12.0-beta.5](https://github.com/OHIF/Viewers/compare/v3.12.0-beta.4...v3.12.0-beta.5) (2025-08-11)
## [3.10.1](https://github.com/OHIF/Viewers/compare/v3.10.0...v3.10.1) (2025-04-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
@@ -27,975 +27,7 @@ See [Conventional Commits](https://conventionalcommits.org) for commit guideline
# [3.12.0-beta.4](https://github.com/OHIF/Viewers/compare/v3.12.0-beta.3...v3.12.0-beta.4) (2025-08-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.12.0-beta.3](https://github.com/OHIF/Viewers/compare/v3.12.0-beta.2...v3.12.0-beta.3) (2025-08-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.12.0-beta.2](https://github.com/OHIF/Viewers/compare/v3.12.0-beta.1...v3.12.0-beta.2) (2025-08-08)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.12.0-beta.1](https://github.com/OHIF/Viewers/compare/v3.12.0-beta.0...v3.12.0-beta.1) (2025-08-05)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.12.0-beta.0](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.116...v3.12.0-beta.0) (2025-08-05)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.116](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.115...v3.11.0-beta.116) (2025-08-05)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.115](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.114...v3.11.0-beta.115) (2025-07-31)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.114](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.113...v3.11.0-beta.114) (2025-07-30)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.113](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.112...v3.11.0-beta.113) (2025-07-30)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.112](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.111...v3.11.0-beta.112) (2025-07-28)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.111](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.110...v3.11.0-beta.111) (2025-07-28)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.110](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.109...v3.11.0-beta.110) (2025-07-28)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.109](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.108...v3.11.0-beta.109) (2025-07-28)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.108](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.107...v3.11.0-beta.108) (2025-07-25)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.107](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.106...v3.11.0-beta.107) (2025-07-25)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.106](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.105...v3.11.0-beta.106) (2025-07-24)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.105](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.104...v3.11.0-beta.105) (2025-07-23)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.104](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.103...v3.11.0-beta.104) (2025-07-23)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.103](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.102...v3.11.0-beta.103) (2025-07-23)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.102](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.101...v3.11.0-beta.102) (2025-07-23)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.101](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.100...v3.11.0-beta.101) (2025-07-23)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.100](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.99...v3.11.0-beta.100) (2025-07-23)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.99](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.98...v3.11.0-beta.99) (2025-07-23)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.98](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.97...v3.11.0-beta.98) (2025-07-23)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.97](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.96...v3.11.0-beta.97) (2025-07-22)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.96](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.95...v3.11.0-beta.96) (2025-07-22)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.95](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.94...v3.11.0-beta.95) (2025-07-21)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.94](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.93...v3.11.0-beta.94) (2025-07-21)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.93](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.92...v3.11.0-beta.93) (2025-07-21)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.92](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.91...v3.11.0-beta.92) (2025-07-18)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.91](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.90...v3.11.0-beta.91) (2025-07-17)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.90](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.89...v3.11.0-beta.90) (2025-07-16)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.88...v3.11.0-beta.89) (2025-07-16)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.87...v3.11.0-beta.88) (2025-07-16)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.86...v3.11.0-beta.87) (2025-07-15)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.85...v3.11.0-beta.86) (2025-07-14)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.84...v3.11.0-beta.85) (2025-07-14)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.83...v3.11.0-beta.84) (2025-07-14)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.82...v3.11.0-beta.83) (2025-07-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.81...v3.11.0-beta.82) (2025-07-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.80...v3.11.0-beta.81) (2025-07-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.79...v3.11.0-beta.80) (2025-07-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.78...v3.11.0-beta.79) (2025-07-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.77...v3.11.0-beta.78) (2025-07-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.76...v3.11.0-beta.77) (2025-07-10)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.75...v3.11.0-beta.76) (2025-07-10)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.74...v3.11.0-beta.75) (2025-07-09)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.73...v3.11.0-beta.74) (2025-07-08)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.72...v3.11.0-beta.73) (2025-07-07)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.71...v3.11.0-beta.72) (2025-07-03)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.70...v3.11.0-beta.71) (2025-07-03)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.70](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.69...v3.11.0-beta.70) (2025-07-03)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.69](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.68...v3.11.0-beta.69) (2025-07-02)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.68](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.67...v3.11.0-beta.68) (2025-06-27)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.67](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.66...v3.11.0-beta.67) (2025-06-27)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.66](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.65...v3.11.0-beta.66) (2025-06-27)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.65](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.64...v3.11.0-beta.65) (2025-06-26)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.64](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.63...v3.11.0-beta.64) (2025-06-26)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.63](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.62...v3.11.0-beta.63) (2025-06-26)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.62](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.61...v3.11.0-beta.62) (2025-06-25)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.61](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.60...v3.11.0-beta.61) (2025-06-25)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.60](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.59...v3.11.0-beta.60) (2025-06-24)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.59](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.58...v3.11.0-beta.59) (2025-06-20)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.58](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.57...v3.11.0-beta.58) (2025-06-18)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.57](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.56...v3.11.0-beta.57) (2025-06-18)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.56](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.55...v3.11.0-beta.56) (2025-06-13)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.55](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.54...v3.11.0-beta.55) (2025-06-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.54](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.53...v3.11.0-beta.54) (2025-06-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.53](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.52...v3.11.0-beta.53) (2025-06-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.52](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.51...v3.11.0-beta.52) (2025-06-10)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.51](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.50...v3.11.0-beta.51) (2025-06-09)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.50](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.49...v3.11.0-beta.50) (2025-06-09)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.49](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.48...v3.11.0-beta.49) (2025-06-07)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.48](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.47...v3.11.0-beta.48) (2025-06-05)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.47](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.46...v3.11.0-beta.47) (2025-06-02)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.46](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.45...v3.11.0-beta.46) (2025-06-02)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.45](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.44...v3.11.0-beta.45) (2025-05-30)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.44](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.43...v3.11.0-beta.44) (2025-05-29)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.43](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.42...v3.11.0-beta.43) (2025-05-29)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.42](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.41...v3.11.0-beta.42) (2025-05-28)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.41](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.40...v3.11.0-beta.41) (2025-05-26)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.40](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.39...v3.11.0-beta.40) (2025-05-26)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.39](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.38...v3.11.0-beta.39) (2025-05-26)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.38](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.37...v3.11.0-beta.38) (2025-05-24)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.37](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.36...v3.11.0-beta.37) (2025-05-16)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.36](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.35...v3.11.0-beta.36) (2025-05-16)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.35](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.34...v3.11.0-beta.35) (2025-05-16)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.34](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.33...v3.11.0-beta.34) (2025-05-15)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.33](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.32...v3.11.0-beta.33) (2025-05-15)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.32](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.31...v3.11.0-beta.32) (2025-05-13)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.31](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.30...v3.11.0-beta.31) (2025-05-12)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.30](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.29...v3.11.0-beta.30) (2025-05-09)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.29](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.28...v3.11.0-beta.29) (2025-05-08)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.28](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.27...v3.11.0-beta.28) (2025-05-08)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.27](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.26...v3.11.0-beta.27) (2025-05-07)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.26](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.25...v3.11.0-beta.26) (2025-05-07)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.25](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.24...v3.11.0-beta.25) (2025-05-06)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.24](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.23...v3.11.0-beta.24) (2025-05-05)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.23](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.22...v3.11.0-beta.23) (2025-05-05)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.22](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.21...v3.11.0-beta.22) (2025-05-02)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.21](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.20...v3.11.0-beta.21) (2025-05-02)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.20](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.19...v3.11.0-beta.20) (2025-05-01)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.19](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.18...v3.11.0-beta.19) (2025-05-01)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.18](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.17...v3.11.0-beta.18) (2025-04-30)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.17](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.16...v3.11.0-beta.17) (2025-04-29)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.16](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.15...v3.11.0-beta.16) (2025-04-29)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.15](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.14...v3.11.0-beta.15) (2025-04-22)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.14](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.13...v3.11.0-beta.14) (2025-04-22)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.13](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.12...v3.11.0-beta.13) (2025-04-22)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.12](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.11...v3.11.0-beta.12) (2025-04-22)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.11](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.10...v3.11.0-beta.11) (2025-04-18)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.10](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.9...v3.11.0-beta.10) (2025-04-17)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.9](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.8...v3.11.0-beta.9) (2025-04-17)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.8](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.7...v3.11.0-beta.8) (2025-04-16)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.7](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.6...v3.11.0-beta.7) (2025-04-16)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.6](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.5...v3.11.0-beta.6) (2025-04-16)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.5](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.4...v3.11.0-beta.5) (2025-04-14)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.4](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.3...v3.11.0-beta.4) (2025-04-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.3](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.2...v3.11.0-beta.3) (2025-04-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.2](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.1...v3.11.0-beta.2) (2025-04-11)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.1](https://github.com/OHIF/Viewers/compare/v3.11.0-beta.0...v3.11.0-beta.1) (2025-04-10)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
# [3.11.0-beta.0](https://github.com/OHIF/Viewers/compare/v3.10.0-beta.159...v3.11.0-beta.0) (2025-04-10)
# [3.10.0](https://github.com/OHIF/Viewers/compare/v3.10.0-beta.159...v3.10.0) (2025-04-10)
**Note:** Version bump only for package @externals/dicom-microscopy-viewer
+1 -1
View File
@@ -1,7 +1,7 @@
{
"name": "@externals/dicom-microscopy-viewer",
"description": "External reference to dicom-microscopy-viewer",
"version": "3.12.0-beta.7",
"version": "3.10.4",
"license": "MIT",
"dependencies": {
"dicom-microscopy-viewer": "^0.46.1"
+11 -11
View File
@@ -21,24 +21,24 @@
"preinstall": "cd .. && node preinstall.js"
},
"devDependencies": {
"@babel/core": "7.28.0",
"@babel/plugin-transform-class-properties": "^7.27.1",
"@babel/plugin-transform-object-rest-spread": "^7.28.0",
"@babel/plugin-transform-private-methods": "^7.27.1",
"@babel/plugin-transform-private-property-in-object": "^7.27.1",
"@babel/core": "7.24.7",
"@babel/plugin-proposal-class-properties": "^7.16.7",
"@babel/plugin-proposal-object-rest-spread": "^7.17.3",
"@babel/plugin-proposal-private-methods": "^7.18.6",
"@babel/plugin-proposal-private-property-in-object": "^7.21.11",
"@babel/plugin-syntax-dynamic-import": "^7.8.3",
"@babel/plugin-transform-arrow-functions": "^7.16.7",
"@babel/plugin-transform-regenerator": "^7.16.7",
"@babel/plugin-transform-runtime": "7.28.0",
"@babel/plugin-transform-typescript": "^7.28.0",
"@babel/preset-env": "7.28.0",
"@babel/preset-react": "^7.27.1",
"@babel/preset-typescript": "^7.27.1"
"@babel/plugin-transform-runtime": "7.24.7",
"@babel/plugin-transform-typescript": "^7.13.0",
"@babel/preset-env": "7.24.7",
"@babel/preset-react": "^7.16.7",
"@babel/preset-typescript": "^7.13.0"
},
"resolutions": {
"**/@babel/runtime": "^7.20.13",
"commander": "8.3.0",
"dcmjs": "0.43.1",
"dcmjs": "0.38.0",
"dicomweb-client": ">=0.10.4",
"nth-check": "^2.1.1",
"trim-newlines": "^5.0.0",
+4 -8
View File
@@ -3,10 +3,10 @@ module.exports = {
babelrcRoots: ['./platform/*', './extensions/*', './modes/*'],
presets: ['@babel/preset-env', '@babel/preset-react', '@babel/preset-typescript'],
plugins: [
['@babel/plugin-transform-class-properties', { loose: true }],
['@babel/plugin-proposal-class-properties', { loose: true }],
'@babel/plugin-transform-typescript',
['@babel/plugin-transform-private-property-in-object', { loose: true }],
['@babel/plugin-transform-private-methods', { loose: true }],
['@babel/plugin-proposal-private-property-in-object', { loose: true }],
['@babel/plugin-proposal-private-methods', { loose: true }],
'@babel/plugin-transform-class-static-block',
],
env: {
@@ -18,23 +18,19 @@ module.exports = {
{
modules: 'commonjs',
debug: false,
targets: { node: 'current' },
bugfixes: true,
},
],
'@babel/preset-react',
'@babel/preset-typescript',
],
plugins: [
'babel-plugin-istanbul',
'@babel/plugin-transform-object-rest-spread',
'@babel/plugin-proposal-object-rest-spread',
'@babel/plugin-syntax-dynamic-import',
'@babel/plugin-transform-regenerator',
'@babel/transform-destructuring',
'@babel/plugin-transform-runtime',
'@babel/plugin-transform-typescript',
'@babel/plugin-transform-class-static-block',
'@babel/plugin-transform-for-of',
],
},
production: {
+802 -1241
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File diff suppressed because it is too large. Load diff
+1 -1
View File
@@ -1 +1 @@
becba7861f99ae4e190caddea8b663e60a9883f5
d383be7c720ec61f5bb1262ebe70893873718951
-118
View File
@@ -1,118 +0,0 @@
diff --git a/extensions/cornerstone/src/components/ViewportOrientationMenu/ViewportOrientationMenu.tsx b/extensions/cornerstone/src/components/ViewportOrientationMenu/ViewportOrientationMenu.tsx
index 6c1e4f8f6..56dac15b5 100644
--- a/extensions/cornerstone/src/components/ViewportOrientationMenu/ViewportOrientationMenu.tsx
+++ b/extensions/cornerstone/src/components/ViewportOrientationMenu/ViewportOrientationMenu.tsx
@@ -156,65 +156,65 @@ function ViewportOrientationMenu({
>
<Button
variant="ghost"
- className="flex h-[28px] flex-shrink-0 items-center justify-start self-stretch"
+ className="flex h-7 w-full flex-shrink-0 items-center justify-start self-stretch px-1 py-0"
onClick={() => handleOrientationChange('axial')}
>
- <span className="mr-0 flex w-4 items-center justify-center">
+ <div className="mr-1 flex w-6 items-center justify-start">
{currentOrientation === 'axial' ? (
- <Icons.Checked className="text-primary h-5 w-5" />
+ <Icons.Checked className="text-primary h-6 w-6" />
) : null}
- </span>
- <span className="flex-1 text-left">Axial</span>
+ </div>
+ <div className="flex-1 text-left">Axial</div>
</Button>
<Button
variant="ghost"
- className="flex h-[28px] flex-shrink-0 items-center justify-start self-stretch"
+ className="flex h-7 w-full flex-shrink-0 items-center justify-start self-stretch px-1 py-0"
onClick={() => handleOrientationChange('sagittal')}
>
- <span className="mr-0 flex w-4 items-center justify-center">
+ <div className="mr-1 flex w-6 items-center justify-start">
{currentOrientation === 'sagittal' ? (
- <Icons.Checked className="text-primary h-5 w-5" />
+ <Icons.Checked className="text-primary h-6 w-6" />
) : null}
- </span>
- <span className="flex-1 text-left">Sagittal</span>
+ </div>
+ <div className="flex-1 text-left">Sagittal</div>
</Button>
<Button
variant="ghost"
- className="flex h-[28px] flex-shrink-0 items-center justify-start self-stretch"
+ className="flex h-7 w-full flex-shrink-0 items-center justify-start self-stretch px-1 py-0"
onClick={() => handleOrientationChange('coronal')}
>
- <span className="mr-0 flex w-4 items-center justify-center">
+ <div className="mr-1 flex w-6 items-center justify-start">
{currentOrientation === 'coronal' ? (
- <Icons.Checked className="text-primary h-5 w-5" />
+ <Icons.Checked className="text-primary h-6 w-6" />
) : null}
- </span>
- <span className="flex-1 text-left">Coronal</span>
+ </div>
+ <div className="flex-1 text-left">Coronal</div>
</Button>
<Button
variant="ghost"
- className="flex h-[28px] flex-shrink-0 items-center justify-start self-stretch"
+ className="flex h-7 w-full flex-shrink-0 items-center justify-start self-stretch px-1 py-0"
onClick={() => handleOrientationChange('acquisition')}
>
- <span className="mr-0 flex w-4 items-center justify-center">
+ <div className="mr-1 flex w-6 items-center justify-start">
{currentOrientation === 'acquisition' ? (
- <Icons.Checked className="text-primary h-5 w-5" />
+ <Icons.Checked className="text-primary h-6 w-6" />
) : null}
- </span>
- <span className="flex-1 text-left">Acquisition</span>
+ </div>
+ <div className="flex-1 text-left">Acquisition</div>
</Button>
{/* Divider */}
- <div className="my-2 border-t border-white/20" />
+ <div className="mx-1 my-2 border-t border-white/20" />
<Button
variant="ghost"
- className="flex h-[28px] flex-shrink-0 items-center justify-start self-stretch"
+ className="flex h-7 w-full flex-shrink-0 items-center justify-start self-stretch px-1 py-0"
onClick={() => handleOrientationChange('reformat')}
>
- <span className="mr-0 flex w-4 items-center justify-center">
+ <div className="mr-1 flex w-6 items-center justify-start">
{currentOrientation === 'reformat' ? (
- <Icons.Checked className="text-primary h-5 w-5" />
+ <Icons.Checked className="text-primary h-6 w-6" />
) : null}
- </span>
- <span className="flex-1 text-left">Reformat</span>
+ </div>
+ <div className="flex-1 text-left">Reformat</div>
</Button>
</PopoverContent>
</Popover>
diff --git a/platform/ui-next/src/components/Icons/Sources/Checked.tsx b/platform/ui-next/src/components/Icons/Sources/Checked.tsx
index 83c8fc57e..c88b75e0d 100644
--- a/platform/ui-next/src/components/Icons/Sources/Checked.tsx
+++ b/platform/ui-next/src/components/Icons/Sources/Checked.tsx
@@ -4,14 +4,14 @@ import type { IconProps } from '../types';
export const Checked = (props: IconProps) => (
<svg
{...props}
- width="24"
+ width="20"
height="24"
- viewBox="0 0 24 24"
+ viewBox="0 0 20 24"
fill="none"
xmlns="http://www.w3.org/2000/svg"
>
<path
- d="M16 9L11.3333 15L8 12.4737"
+ d="M14 9L9.3333 15L6 12.4737"
stroke="currentColor"
strokeWidth="1.5"
strokeLinecap="round"
File diff suppressed because it is too large. Load diff
@@ -1,5 +1,5 @@
module.exports = {
plugins: ['@babel/plugin-transform-class-properties'],
plugins: ['@babel/plugin-proposal-class-properties'],
env: {
test: {
presets: [
@@ -15,7 +15,7 @@ module.exports = {
'@babel/preset-react',
],
plugins: [
'@babel/plugin-transform-object-rest-spread',
'@babel/plugin-proposal-object-rest-spread',
'@babel/plugin-syntax-dynamic-import',
'@babel/plugin-transform-regenerator',
'@babel/plugin-transform-runtime',
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone-dicom-pmap",
"version": "3.12.0-beta.7",
"version": "3.10.4",
"description": "DICOM Parametric Map read workflow",
"author": "OHIF",
"license": "MIT",
@@ -33,10 +33,10 @@
"start": "yarn run dev"
},
"peerDependencies": {
"@ohif/core": "3.12.0-beta.7",
"@ohif/extension-cornerstone": "3.12.0-beta.7",
"@ohif/extension-default": "3.12.0-beta.7",
"@ohif/i18n": "3.12.0-beta.7",
"@ohif/core": "3.10.4",
"@ohif/extension-cornerstone": "3.10.4",
"@ohif/extension-default": "3.10.4",
"@ohif/i18n": "3.10.4",
"prop-types": "^15.6.2",
"react": "^18.3.1",
"react-dom": "^18.3.1",
@@ -46,8 +46,8 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.32.5",
"@cornerstonejs/core": "^3.32.5",
"@cornerstonejs/adapters": "^3.11.6",
"@cornerstonejs/core": "^3.11.6",
"@kitware/vtk.js": "32.12.0",
"react-color": "^2.19.3"
}
@@ -1,9 +1,10 @@
import { utils, Types as OhifTypes } from '@ohif/core';
import i18n from '@ohif/i18n';
import { utils } from '@ohif/core';
import { metaData, cache, utilities as csUtils, volumeLoader } from '@cornerstonejs/core';
import { adaptersPMAP } from '@cornerstonejs/adapters';
import { SOPClassHandlerId } from './id';
import { dicomLoaderService, VOLUME_LOADER_SCHEME } from '@ohif/extension-cornerstone';
import { dicomLoaderService } from '@ohif/extension-cornerstone';
const VOLUME_LOADER_SCHEME = 'cornerstoneStreamingImageVolume';
const sopClassUids = ['1.2.840.10008.5.1.4.1.1.30'];
function _getDisplaySetsFromSeries(
@@ -56,8 +57,7 @@ function _getDisplaySetsFromSeries(
wadoRoot,
wadoUriRoot,
wadoUri,
supportsWindowLevel: true,
label: SeriesDescription || `${i18n.t('Series')} ${SeriesNumber} - ${i18n.t('PMAP')}`,
isOverlayDisplaySet: true,
};
const referencedSeriesSequence = instance.ReferencedSeriesSequence;
@@ -227,8 +227,7 @@ async function _loadParametricMap({ displaySet, headers }: withAppTypes) {
return derivedVolume;
}
function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams) {
const { servicesManager, extensionManager } = params;
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
const getDisplaySetsFromSeries = instances => {
return _getDisplaySetsFromSeries(instances, servicesManager, extensionManager);
};
@@ -1,10 +1,16 @@
import PropTypes from 'prop-types';
import React, { useCallback, useEffect, useRef, useState } from 'react';
import { useViewportGrid } from '@ohif/ui-next';
import { OHIFCornerstoneViewport } from '@ohif/extension-cornerstone';
function OHIFCornerstonePMAPViewport(props: withAppTypes) {
const { displaySets, children, viewportOptions, displaySetOptions, servicesManager } = props;
const {
displaySets,
children,
viewportOptions,
displaySetOptions,
servicesManager,
extensionManager,
} = props;
const viewportId = viewportOptions.viewportId;
const { displaySetService, segmentationService, uiNotificationService, customizationService } =
servicesManager.services;
@@ -53,6 +59,9 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
const getCornerstoneViewport = useCallback(() => {
const { displaySet: referencedDisplaySet } = referencedDisplaySetRef.current;
const { component: Component } = extensionManager.getModuleEntry(
'@ohif/extension-cornerstone.viewportModule.cornerstone'
);
displaySetOptions.unshift({});
const [pmapDisplaySetOptions] = displaySetOptions;
@@ -84,7 +93,7 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
});
return (
<OHIFCornerstoneViewport
<Component
{...props}
// Referenced + PMAP displaySets must be passed as parameter in this order
displaySets={[referencedDisplaySet, pmapDisplaySet]}
@@ -95,16 +104,15 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
presentationIds: viewportOptions.presentationIds,
}}
displaySetOptions={[{}, pmapDisplaySetOptions]}
/>
></Component>
);
}, [
extensionManager,
displaySetOptions,
props,
pmapDisplaySet,
viewportOptions.orientation,
viewportOptions.viewportId,
viewportOptions.presentationIds,
uiNotificationService,
]);
// Cleanup the PMAP viewport when the viewport is destroyed
File diff suppressed because it is too large. Load diff
@@ -1,5 +1,5 @@
module.exports = {
plugins: ['@babel/plugin-transform-class-properties'],
plugins: ['@babel/plugin-proposal-class-properties'],
env: {
test: {
presets: [
@@ -15,7 +15,7 @@ module.exports = {
'@babel/preset-react',
],
plugins: [
'@babel/plugin-transform-object-rest-spread',
'@babel/plugin-proposal-object-rest-spread',
'@babel/plugin-syntax-dynamic-import',
'@babel/plugin-transform-regenerator',
'@babel/plugin-transform-runtime',
+5 -5
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone-dicom-rt",
"version": "3.12.0-beta.7",
"version": "3.10.4",
"description": "DICOM RT read workflow",
"author": "OHIF",
"license": "MIT",
@@ -33,10 +33,10 @@
"start": "yarn run dev"
},
"peerDependencies": {
"@ohif/core": "3.12.0-beta.7",
"@ohif/extension-cornerstone": "3.12.0-beta.7",
"@ohif/extension-default": "3.12.0-beta.7",
"@ohif/i18n": "3.12.0-beta.7",
"@ohif/core": "3.10.4",
"@ohif/extension-cornerstone": "3.10.4",
"@ohif/extension-default": "3.10.4",
"@ohif/i18n": "3.10.4",
"prop-types": "^15.6.2",
"react": "^18.3.1",
"react-dom": "^18.3.1",
@@ -27,7 +27,7 @@ const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
// it will be in the correct position zoom and pan
commandsManager.runCommand('updateStoredPositionPresentation', {
viewportId,
displaySetInstanceUIDs: [referencedDisplaySet.displaySetInstanceUID],
displaySetInstanceUID: referencedDisplaySet.displaySetInstanceUID,
});
viewportGridService.setDisplaySetsForViewport({
@@ -1,5 +1,4 @@
import { utils, Types as OhifTypes } from '@ohif/core';
import i18n from '@ohif/i18n';
import { utils } from '@ohif/core';
import { SOPClassHandlerId } from './id';
import loadRTStruct from './loadRTStruct';
@@ -31,7 +30,7 @@ function _getDisplaySetsFromSeries(
const displaySet = {
Modality: 'RTSTRUCT',
loading: false,
isReconstructable: false,
isReconstructable: false, // by default for now since it is a volumetric SEG currently
displaySetInstanceUID: utils.guid(),
SeriesDescription,
SeriesNumber,
@@ -54,7 +53,6 @@ function _getDisplaySetsFromSeries(
wadoUriRoot,
wadoUri,
isOverlayDisplaySet: true,
label: SeriesDescription || `${i18n.t('Series')} ${SeriesNumber} - ${i18n.t('RTSTRUCT')}`,
};
let referencedSeriesSequence = instance.ReferencedSeriesSequence;
@@ -87,7 +85,6 @@ function _getDisplaySetsFromSeries(
const addedDisplaySet = displaySetsAdded[0];
if (addedDisplaySet.SeriesInstanceUID === displaySet.referencedSeriesInstanceUID) {
displaySet.referencedDisplaySetInstanceUID = addedDisplaySet.displaySetInstanceUID;
displaySet.isReconstructable = addedDisplaySet.isReconstructable;
unsubscribe();
}
}
@@ -95,22 +92,14 @@ function _getDisplaySetsFromSeries(
} else {
const referencedDisplaySet = referencedDisplaySets[0];
displaySet.referencedDisplaySetInstanceUID = referencedDisplaySet.displaySetInstanceUID;
displaySet.isReconstructable = referencedDisplaySet.isReconstructable;
}
displaySet.load = ({ headers, createSegmentation = true }) =>
_load(displaySet, servicesManager, extensionManager, headers, createSegmentation);
displaySet.load = ({ headers }) => _load(displaySet, servicesManager, extensionManager, headers);
return [displaySet];
}
function _load(
rtDisplaySet,
servicesManager: AppTypes.ServicesManager,
extensionManager,
headers,
createSegmentation = true
) {
function _load(rtDisplaySet, servicesManager: AppTypes.ServicesManager, extensionManager, headers) {
const { SOPInstanceUID } = rtDisplaySet;
const { segmentationService } = servicesManager.services;
if (
@@ -132,21 +121,16 @@ function _load(
rtDisplaySet.structureSet = structureSet;
}
if (createSegmentation) {
segmentationService
.createSegmentationForRTDisplaySet(rtDisplaySet)
.then(() => {
rtDisplaySet.loading = false;
resolve();
})
.catch(error => {
rtDisplaySet.loading = false;
reject(error);
});
} else {
rtDisplaySet.loading = false;
resolve();
}
segmentationService
.createSegmentationForRTDisplaySet(rtDisplaySet)
.then(() => {
rtDisplaySet.loading = false;
resolve();
})
.catch(error => {
rtDisplaySet.loading = false;
reject(error);
});
});
return loadPromises[SOPInstanceUID];
@@ -187,14 +171,20 @@ function _deriveReferencedSeriesSequenceFromFrameOfReferenceSequence(
return ReferencedSeriesSequence;
}
function _segmentationExistsInCache() {
function _segmentationExistsInCache(
rtDisplaySet,
segmentationService: AppTypes.SegmentationService
) {
// Todo: fix this
return false;
// This should be abstracted with the CornerstoneCacheService
const rtContourId = rtDisplaySet.displaySetInstanceUID;
const contour = segmentationService.getContour(rtContourId);
return contour !== undefined;
}
function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams) {
const { servicesManager, extensionManager } = params;
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
return [
{
name: 'dicom-rt',
@@ -1,4 +1,8 @@
import { utils, Types } from '@ohif/extension-cornerstone';
const RESPONSE = {
NO_NEVER: -1,
CANCEL: 0,
HYDRATE_SEG: 5,
};
function promptHydrateRT({
servicesManager,
@@ -6,20 +10,74 @@ function promptHydrateRT({
viewportId,
preHydrateCallbacks,
hydrateRTDisplaySet,
}: {
servicesManager: AppTypes.ServicesManager;
rtDisplaySet: AppTypes.DisplaySet;
viewportId: string;
preHydrateCallbacks?: Types.HydrationCallback[];
hydrateRTDisplaySet: Types.HydrationCallback;
}) {
return utils.promptHydrationDialog({
servicesManager,
viewportId,
displaySet: rtDisplaySet,
preHydrateCallbacks,
hydrateCallback: hydrateRTDisplaySet,
type: 'RTSTRUCT',
}: withAppTypes) {
const { uiViewportDialogService, customizationService } = servicesManager.services;
const extensionManager = servicesManager._extensionManager;
const appConfig = extensionManager._appConfig;
return new Promise(async function (resolve, reject) {
const promptResult = appConfig?.disableConfirmationPrompts
? RESPONSE.HYDRATE_SEG
: await _askHydrate(uiViewportDialogService, customizationService, viewportId);
if (promptResult === RESPONSE.HYDRATE_SEG) {
preHydrateCallbacks?.forEach(callback => {
callback();
});
const isHydrated = await hydrateRTDisplaySet({
rtDisplaySet,
viewportId,
servicesManager,
});
resolve(isHydrated);
}
});
}
function _askHydrate(
uiViewportDialogService: AppTypes.UIViewportDialogService,
customizationService: AppTypes.CustomizationService,
viewportId
) {
return new Promise(function (resolve, reject) {
const message = customizationService.getCustomization('viewportNotification.hydrateRTMessage');
const actions = [
{
id: 'no-hydrate',
type: 'secondary',
text: 'No',
value: RESPONSE.CANCEL,
},
{
id: 'yes-hydrate',
type: 'primary',
text: 'Yes',
value: RESPONSE.HYDRATE_SEG,
},
];
const onSubmit = result => {
uiViewportDialogService.hide();
resolve(result);
};
uiViewportDialogService.show({
id: 'promptHydrateRT',
viewportId,
type: 'info',
message,
actions,
onSubmit,
onOutsideClick: () => {
uiViewportDialogService.hide();
resolve(RESPONSE.CANCEL);
},
onKeyPress: event => {
if (event.key === 'Enter') {
onSubmit(RESPONSE.HYDRATE_SEG);
}
},
});
});
}
@@ -1,27 +1,35 @@
import React, { Component, useCallback, useEffect, useRef, useState } from 'react';
import React, { useCallback, useEffect, useRef, useState } from 'react';
import PropTypes from 'prop-types';
import { ViewportActionArrows } from '@ohif/ui-next';
import { useViewportGrid } from '@ohif/ui-next';
import {
utils,
usePositionPresentationStore,
OHIFCornerstoneViewport,
} from '@ohif/extension-cornerstone';
import { utils } from '@ohif/extension-cornerstone';
import promptHydrateRT from '../utils/promptHydrateRT';
import _getStatusComponent from './_getStatusComponent';
import createRTToolGroupAndAddTools from '../utils/initRTToolGroup';
import { useSystem } from '@ohif/core/src';
import { usePositionPresentationStore } from '@ohif/extension-cornerstone';
const RT_TOOLGROUP_BASE_NAME = 'RTToolGroup';
function OHIFCornerstoneRTViewport(props: withAppTypes) {
const { servicesManager, commandsManager } = useSystem();
const { children, displaySets, viewportOptions } = props as {
children: React.ReactNode;
displaySets: AppTypes.DisplaySet[];
viewportOptions: AppTypes.ViewportOptions;
};
const {
children,
displaySets,
viewportOptions,
servicesManager,
extensionManager,
commandsManager,
} = props;
const { displaySetService, toolGroupService, segmentationService, customizationService } =
servicesManager.services;
const {
displaySetService,
toolGroupService,
segmentationService,
uiNotificationService,
customizationService,
viewportActionCornersService,
} = servicesManager.services;
const viewportId = viewportOptions.viewportId;
@@ -38,34 +46,31 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
const rtDisplaySet = displaySets[0];
const [{ viewports, activeViewportId }, viewportGridService] = useViewportGrid();
const [viewportGrid, viewportGridService] = useViewportGrid();
// States
const selectedSegmentObjectIndex: number = 0;
const { setPositionPresentation } = usePositionPresentationStore();
// Hydration means that the RT is opened and segments are loaded into the
// segmentation panel, and RT is also rendered on any viewport that is in the
// same frameOfReferenceUID as the referencedSeriesUID of the RT. However,
// loading basically means RT loading over network and bit unpacking of the
// RT data.
const [isHydrated, setIsHydrated] = useState(rtDisplaySet.isHydrated);
const [rtIsLoading, setRtIsLoading] = useState(!rtDisplaySet.isLoaded);
const [element, setElement] = useState(null);
const [processingProgress, setProcessingProgress] = useState({
percentComplete: null,
totalSegments: null,
});
// refs
const referencedDisplaySetRef = useRef(null);
const { viewports, activeViewportId } = viewportGrid;
const referencedDisplaySetInstanceUID = rtDisplaySet.referencedDisplaySetInstanceUID;
// If the referencedDisplaySetInstanceUID is not found, it means the RTStruct series is being
// launched without its corresponding referenced display set (e.g., the RTStruct series is launched using
// series launch /mode?StudyInstanceUIDs=&SeriesInstanceUID).
// In such cases, we attempt to handle this scenario gracefully by
// invoking a custom handler. Ideally, if a user tries to launch a series that isn't viewable,
// (eg.: we can prompt them with an explanation and provide a link to the full study).
if (!referencedDisplaySetInstanceUID) {
const missingReferenceDisplaySetHandler = customizationService.getCustomization(
'missingReferenceDisplaySetHandler'
);
const { handled } = missingReferenceDisplaySetHandler();
if (handled) {
return;
}
}
const referencedDisplaySet = displaySetService.getDisplaySetByUID(
referencedDisplaySetInstanceUID
);
@@ -75,31 +80,100 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
displaySet: referencedDisplaySet,
metadata: referencedDisplaySetMetadata,
};
/**
* OnElementEnabled callback which is called after the cornerstoneExtension
* has enabled the element. Note: we delegate all the image rendering to
* cornerstoneExtension, so we don't need to do anything here regarding
* the image rendering, element enabling etc.
*/
const onElementEnabled = evt => {
setElement(evt.detail.element);
};
const onElementDisabled = () => {
setElement(null);
};
const storePresentationState = useCallback(() => {
viewportGrid?.viewports.forEach(({ viewportId }) => {
commandsManager.runCommand('storePresentation', {
viewportId,
});
});
}, [viewportGrid]);
const hydrateRTDisplaySet = useCallback(
({ rtDisplaySet, viewportId }) => {
commandsManager.runCommand('hydrateRTSDisplaySet', {
displaySet: rtDisplaySet,
viewportId,
});
},
[commandsManager]
);
const getCornerstoneViewport = useCallback(() => {
const { component: Component } = extensionManager.getModuleEntry(
'@ohif/extension-cornerstone.viewportModule.cornerstone'
);
const { displaySet: referencedDisplaySet } = referencedDisplaySetRef.current;
// Todo: jump to the center of the first segment
return (
<Component
{...props}
displaySets={[referencedDisplaySet, rtDisplaySet]}
viewportOptions={{
viewportType: 'stack',
toolGroupId: toolGroupId,
orientation: viewportOptions.orientation,
viewportId: viewportOptions.viewportId,
presentationIds: viewportOptions.presentationIds,
}}
onElementEnabled={evt => {
props.onElementEnabled?.(evt);
onElementEnabled(evt);
}}
onElementDisabled={onElementDisabled}
></Component>
);
}, [viewportId, rtDisplaySet, toolGroupId]);
const onSegmentChange = useCallback(
direction => {
utils.handleSegmentChange({
direction,
segDisplaySet: rtDisplaySet,
viewportId,
selectedSegmentObjectIndex,
segmentationService,
});
},
[selectedSegmentObjectIndex]
);
useEffect(() => {
if (rtIsLoading) {
return;
}
// if not active viewport, return
if (viewportId !== activeViewportId) {
return;
}
promptHydrateRT({
servicesManager,
viewportId,
rtDisplaySet,
hydrateRTDisplaySet: async () => {
return commandsManager.runCommand('hydrateSecondaryDisplaySet', {
displaySet: rtDisplaySet,
viewportId,
});
},
preHydrateCallbacks: [storePresentationState],
hydrateRTDisplaySet,
}).then(isHydrated => {
if (isHydrated) {
setIsHydrated(true);
}
});
}, [servicesManager, viewportId, rtDisplaySet, rtIsLoading, commandsManager, activeViewportId]);
}, [servicesManager, viewportId, rtDisplaySet, rtIsLoading]);
useEffect(() => {
// I'm not sure what is this, since in RT we support Overlapping segments
// via contours
const { unsubscribe } = segmentationService.subscribe(
segmentationService.EVENTS.SEGMENTATION_LOADING_COMPLETE,
evt => {
@@ -119,6 +193,14 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
viewPresentation: {},
});
}
if (evt.overlappingSegments) {
uiNotificationService.show({
title: 'Overlapping Segments',
message: 'Overlapping segments detected which is not currently supported',
type: 'warning',
});
}
}
);
@@ -128,7 +210,7 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
}, [rtDisplaySet]);
useEffect(() => {
const segmentLoadingSubscription = segmentationService.subscribe(
const { unsubscribe } = segmentationService.subscribe(
segmentationService.EVENTS.SEGMENT_LOADING_COMPLETE,
({ percentComplete, numSegments }) => {
setProcessingProgress({
@@ -138,7 +220,16 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
}
);
const displaySetsRemovedSubscription = displaySetService.subscribe(
return () => {
unsubscribe();
};
}, [rtDisplaySet]);
/**
Cleanup the SEG viewport when the viewport is destroyed
*/
useEffect(() => {
const onDisplaySetsRemovedSubscription = displaySetService.subscribe(
displaySetService.EVENTS.DISPLAY_SETS_REMOVED,
({ displaySetInstanceUIDs }) => {
const activeViewport = viewports.get(activeViewportId);
@@ -152,10 +243,9 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
);
return () => {
segmentLoadingSubscription.unsubscribe();
displaySetsRemovedSubscription.unsubscribe();
onDisplaySetsRemovedSubscription.unsubscribe();
};
}, [rtDisplaySet, displaySetService, viewports, activeViewportId, viewportGridService]);
}, []);
useEffect(() => {
let toolGroup = toolGroupService.getToolGroup(toolGroupId);
@@ -169,33 +259,38 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
return () => {
// remove the segmentation representations if seg displayset changed
segmentationService.removeSegmentationRepresentations(viewportId);
referencedDisplaySetRef.current = null;
toolGroupService.destroyToolGroup(toolGroupId);
};
}, []);
const getCornerstoneViewport = useCallback(() => {
const { displaySet: referencedDisplaySet } = referencedDisplaySetRef.current;
useEffect(() => {
setIsHydrated(rtDisplaySet.isHydrated);
// Todo: jump to the center of the first segment
return (
<OHIFCornerstoneViewport
{...props}
displaySets={[referencedDisplaySet, rtDisplaySet]}
viewportOptions={{
viewportType: viewportOptions.viewportType,
toolGroupId: toolGroupId,
orientation: viewportOptions.orientation,
viewportId: viewportOptions.viewportId,
presentationIds: viewportOptions.presentationIds,
}}
onElementEnabled={evt => {
props.onElementEnabled?.(evt);
}}
/>
);
}, [viewportId, rtDisplaySet, toolGroupId]);
return () => {
// remove the segmentation representations if seg displayset changed
segmentationService.removeSegmentationRepresentations(viewportId);
referencedDisplaySetRef.current = null;
};
}, [rtDisplaySet]);
const onStatusClick = useCallback(async () => {
// Before hydrating a RT and make it added to all viewports in the grid
// that share the same frameOfReferenceUID, we need to store the viewport grid
// presentation state, so that we can restore it after hydrating the RT. This is
// required if the user has changed the viewport (other viewport than RT viewport)
// presentation state (w/l and invert) and then opens the RT. If we don't store
// the presentation state, the viewport will be reset to the default presentation
storePresentationState();
const isHydrated = await hydrateRTDisplaySet({
rtDisplaySet,
viewportId,
});
setIsHydrated(isHydrated);
}, [hydrateRTDisplaySet, rtDisplaySet, storePresentationState, viewportId]);
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
let childrenWithProps = null;
if (
@@ -218,6 +313,43 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
});
}
useEffect(() => {
viewportActionCornersService.addComponents([
{
viewportId,
id: 'viewportStatusComponent',
component: _getStatusComponent({
isHydrated,
onStatusClick,
}),
indexPriority: -100,
location: viewportActionCornersService.LOCATIONS.topLeft,
},
{
viewportId,
id: 'viewportActionArrowsComponent',
component: (
<ViewportActionArrows
key="actionArrows"
onArrowsClick={onSegmentChange}
className={
viewportId === activeViewportId ? 'visible' : 'invisible group-hover/pane:visible'
}
></ViewportActionArrows>
),
indexPriority: 0,
location: viewportActionCornersService.LOCATIONS.topRight,
},
]);
}, [
activeViewportId,
isHydrated,
onSegmentChange,
onStatusClick,
viewportActionCornersService,
viewportId,
]);
return (
<>
<div className="relative flex h-full w-full flex-row overflow-hidden">
@@ -0,0 +1,59 @@
import React from 'react';
import { useTranslation } from 'react-i18next';
import { ViewportActionButton } from '@ohif/ui-next';
import { Icons, Tooltip, TooltipTrigger, TooltipContent } from '@ohif/ui-next';
export default function _getStatusComponent({ isHydrated, onStatusClick }) {
let ToolTipMessage = null;
let StatusIcon = null;
switch (isHydrated) {
case true:
StatusIcon = () => <Icons.ByName name="status-alert" />;
ToolTipMessage = () => <div>This Segmentation is loaded in the segmentation panel</div>;
break;
case false:
StatusIcon = () => (
<Icons.ByName
className="text-muted-foreground h-4 w-4"
name="status-untracked"
/>
);
ToolTipMessage = () => <div>Click LOAD to load RTSTRUCT.</div>;
}
const StatusArea = () => {
const { t } = useTranslation('Common');
const loadStr = t('LOAD');
return (
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
<StatusIcon />
<span className="ml-1">RTSTRUCT</span>
</div>
{!isHydrated && (
<ViewportActionButton onInteraction={onStatusClick}>{loadStr}</ViewportActionButton>
)}
</div>
);
};
return (
<>
{ToolTipMessage && (
<Tooltip>
<TooltipTrigger asChild>
<span>
<StatusArea />
</span>
</TooltipTrigger>
<TooltipContent side="bottom">
<ToolTipMessage />
</TooltipContent>
</Tooltip>
)}
{!ToolTipMessage && <StatusArea />}
</>
);
}
File diff suppressed because it is too large. Load diff
@@ -1,5 +1,5 @@
module.exports = {
plugins: ['@babel/plugin-transform-class-properties'],
plugins: ['@babel/plugin-proposal-class-properties'],
env: {
test: {
presets: [
@@ -15,7 +15,7 @@ module.exports = {
'@babel/preset-react',
],
plugins: [
'@babel/plugin-transform-object-rest-spread',
'@babel/plugin-proposal-object-rest-spread',
'@babel/plugin-syntax-dynamic-import',
'@babel/plugin-transform-regenerator',
'@babel/plugin-transform-runtime',
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone-dicom-seg",
"version": "3.12.0-beta.7",
"version": "3.10.4",
"description": "DICOM SEG read workflow",
"author": "OHIF",
"license": "MIT",
@@ -33,10 +33,10 @@
"start": "yarn run dev"
},
"peerDependencies": {
"@ohif/core": "3.12.0-beta.7",
"@ohif/extension-cornerstone": "3.12.0-beta.7",
"@ohif/extension-default": "3.12.0-beta.7",
"@ohif/i18n": "3.12.0-beta.7",
"@ohif/core": "3.10.4",
"@ohif/extension-cornerstone": "3.10.4",
"@ohif/extension-default": "3.10.4",
"@ohif/i18n": "3.10.4",
"prop-types": "^15.6.2",
"react": "^18.3.1",
"react-dom": "^18.3.1",
@@ -46,8 +46,8 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.32.5",
"@cornerstonejs/core": "^3.32.5",
"@cornerstonejs/adapters": "^3.11.6",
"@cornerstonejs/core": "^3.11.6",
"@kitware/vtk.js": "32.12.0",
"react-color": "^2.19.3"
}
@@ -220,7 +220,7 @@ const commandsModule = ({
}
const { label } = segmentation;
const defaultDataSource = dataSource ?? extensionManager.getActiveDataSource()[0];
const defaultDataSource = dataSource ?? extensionManager.getActiveDataSource();
const {
value: reportName,
@@ -251,11 +251,6 @@ const commandsModule = ({
const { dataset: naturalizedReport } = generatedData;
// DCMJS assigns a dummy study id during creation, and this can cause problems, so clearing it out
if (naturalizedReport.StudyID === 'No Study ID') {
naturalizedReport.StudyID = '';
}
await selectedDataSourceConfig.store.dicom(naturalizedReport);
// add the information for where we stored it to the instance as well
@@ -1,13 +1,12 @@
import { utils, Types as OhifTypes } from '@ohif/core';
import i18n from '@ohif/i18n';
import { metaData, eventTarget } from '@cornerstonejs/core';
import { utils } from '@ohif/core';
import { metaData, triggerEvent, eventTarget } from '@cornerstonejs/core';
import { CONSTANTS, segmentation as cstSegmentation } from '@cornerstonejs/tools';
import { adaptersSEG, Enums } from '@cornerstonejs/adapters';
import { SOPClassHandlerId } from './id';
import { dicomlabToRGB } from './utils/dicomlabToRGB';
const sopClassUids = ['1.2.840.10008.5.1.4.1.1.66.4', '1.2.840.10008.5.1.4.1.1.66.7'];
const sopClassUids = ['1.2.840.10008.5.1.4.1.1.66.4'];
const loadPromises = {};
@@ -34,7 +33,7 @@ function _getDisplaySetsFromSeries(
const displaySet = {
Modality: 'SEG',
loading: false,
isReconstructable: false,
isReconstructable: true, // by default for now since it is a volumetric SEG currently
displaySetInstanceUID: utils.guid(),
SeriesDescription,
SeriesNumber,
@@ -58,7 +57,6 @@ function _getDisplaySetsFromSeries(
wadoUriRoot,
wadoUri,
isOverlayDisplaySet: true,
label: SeriesDescription || `${i18n.t('Series')} ${SeriesNumber} - ${i18n.t('SEG')}`,
};
const referencedSeriesSequence = instance.ReferencedSeriesSequence;
@@ -91,14 +89,12 @@ function _getDisplaySetsFromSeries(
const addedDisplaySet = displaySetsAdded[0];
if (addedDisplaySet.SeriesInstanceUID === displaySet.referencedSeriesInstanceUID) {
displaySet.referencedDisplaySetInstanceUID = addedDisplaySet.displaySetInstanceUID;
displaySet.isReconstructable = addedDisplaySet.isReconstructable;
unsubscribe();
}
}
);
} else {
displaySet.referencedDisplaySetInstanceUID = referencedDisplaySet.displaySetInstanceUID;
displaySet.isReconstructable = referencedDisplaySet.isReconstructable;
}
displaySet.load = async ({ headers }) =>
@@ -236,8 +232,7 @@ function _segmentationExists(segDisplaySet) {
return cstSegmentation.state.getSegmentation(segDisplaySet.displaySetInstanceUID);
}
function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams) {
const { servicesManager, extensionManager } = params;
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
const getDisplaySetsFromSeries = instances => {
return _getDisplaySetsFromSeries(instances, servicesManager, extensionManager);
};
@@ -1,14 +1,7 @@
function createSEGToolGroupAndAddTools({
commandsManager,
toolGroupService,
customizationService,
toolGroupId,
}) {
function createSEGToolGroupAndAddTools(ToolGroupService, customizationService, toolGroupId) {
const tools = customizationService.getCustomization('cornerstone.overlayViewportTools');
const updatedTools = commandsManager.run('initializeSegmentLabelTool', { tools });
return toolGroupService.createToolGroupAndAddTools(toolGroupId, updatedTools);
return ToolGroupService.createToolGroupAndAddTools(toolGroupId, tools);
}
export default createSEGToolGroupAndAddTools;
@@ -1,4 +1,8 @@
import { utils, Types } from '@ohif/extension-cornerstone';
const RESPONSE = {
NO_NEVER: -1,
CANCEL: 0,
HYDRATE_SEG: 5,
};
function promptHydrateSEG({
servicesManager,
@@ -6,20 +10,75 @@ function promptHydrateSEG({
viewportId,
preHydrateCallbacks,
hydrateCallback,
}: {
servicesManager: AppTypes.ServicesManager;
segDisplaySet: AppTypes.DisplaySet;
viewportId: string;
preHydrateCallbacks?: Types.HydrationCallback[];
hydrateCallback: Types.HydrationCallback;
}) {
return utils.promptHydrationDialog({
servicesManager,
viewportId,
displaySet: segDisplaySet as AppTypes.DisplaySet,
preHydrateCallbacks,
hydrateCallback,
type: 'SEG',
}: withAppTypes) {
const { uiViewportDialogService, customizationService } = servicesManager.services;
const extensionManager = servicesManager._extensionManager;
const appConfig = extensionManager._appConfig;
return new Promise(async function (resolve, reject) {
const promptResult = appConfig?.disableConfirmationPrompts
? RESPONSE.HYDRATE_SEG
: await _askHydrate(uiViewportDialogService, customizationService, viewportId);
if (promptResult === RESPONSE.HYDRATE_SEG) {
preHydrateCallbacks?.forEach(callback => {
callback();
});
window.setTimeout(async () => {
const isHydrated = await hydrateCallback({
segDisplaySet,
viewportId,
});
resolve(isHydrated);
}, 0);
}
});
}
function _askHydrate(
uiViewportDialogService: AppTypes.UIViewportDialogService,
customizationService: AppTypes.CustomizationService,
viewportId
) {
return new Promise(function (resolve, reject) {
const message = customizationService.getCustomization('viewportNotification.hydrateSEGMessage');
const actions = [
{
id: 'no-hydrate',
type: 'secondary',
text: 'No',
value: RESPONSE.CANCEL,
},
{
id: 'yes-hydrate',
type: 'primary',
text: 'Yes',
value: RESPONSE.HYDRATE_SEG,
},
];
const onSubmit = result => {
uiViewportDialogService.hide();
resolve(result);
};
uiViewportDialogService.show({
viewportId,
type: 'info',
message,
actions,
onSubmit,
onOutsideClick: () => {
uiViewportDialogService.hide();
resolve(RESPONSE.CANCEL);
},
onKeyPress: event => {
if (event.key === 'Enter') {
onSubmit(RESPONSE.HYDRATE_SEG);
}
},
});
});
}
@@ -1,24 +1,36 @@
import React, { useCallback, useEffect, useRef, useState } from 'react';
import { useTranslation } from 'react-i18next';
import { ViewportActionArrows } from '@ohif/ui-next';
import { useViewportGrid } from '@ohif/ui-next';
import createSEGToolGroupAndAddTools from '../utils/initSEGToolGroup';
import promptHydrateSEG from '../utils/promptHydrateSEG';
import { usePositionPresentationStore, OHIFCornerstoneViewport } from '@ohif/extension-cornerstone';
import _getStatusComponent from './_getStatusComponent';
import { usePositionPresentationStore } from '@ohif/extension-cornerstone';
import { SegmentationRepresentations } from '@cornerstonejs/tools/enums';
import { useSystem } from '@ohif/core/src/contextProviders/SystemProvider';
import { utils } from '@ohif/extension-cornerstone';
const SEG_TOOLGROUP_BASE_NAME = 'SEGToolGroup';
function OHIFCornerstoneSEGViewport(props: withAppTypes) {
const { servicesManager, commandsManager } = useSystem();
const { children, displaySets, viewportOptions } = props as {
children: React.ReactNode;
displaySets: AppTypes.DisplaySet[];
viewportOptions: AppTypes.ViewportOptions;
};
const {
children,
displaySets,
viewportOptions,
servicesManager,
extensionManager,
commandsManager,
} = props;
const { t } = useTranslation('SEGViewport');
const viewportId = viewportOptions.viewportId;
const { displaySetService, toolGroupService, segmentationService, customizationService } =
servicesManager.services;
const {
displaySetService,
toolGroupService,
segmentationService,
customizationService,
viewportActionCornersService,
} = servicesManager.services;
const LoadingIndicatorTotalPercent = customizationService.getCustomization(
'ui.loadingIndicatorTotalPercent'
@@ -35,6 +47,7 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
const [viewportGrid, viewportGridService] = useViewportGrid();
// States
const selectedSegmentObjectIndex: number = 0;
const { setPositionPresentation } = usePositionPresentationStore();
// Hydration means that the SEG is opened and segments are loaded into the
@@ -42,7 +55,9 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
// same frameOfReferenceUID as the referencedSeriesUID of the SEG. However,
// loading basically means SEG loading over network and bit unpacking of the
// SEG data.
const [isHydrated, setIsHydrated] = useState(segDisplaySet.isHydrated);
const [segIsLoading, setSegIsLoading] = useState(!segDisplaySet.isLoaded);
const [element, setElement] = useState(null);
const [processingProgress, setProcessingProgress] = useState({
percentComplete: null,
totalSegments: null,
@@ -54,21 +69,6 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
const { viewports, activeViewportId } = viewportGrid;
const referencedDisplaySetInstanceUID = segDisplaySet.referencedDisplaySetInstanceUID;
// If the referencedDisplaySetInstanceUID is not found, it means the SEG series is being
// launched without its corresponding referenced display set (e.g., the SEG series is launched using
// series launch /mode?StudyInstanceUIDs=&SeriesInstanceUID).
// In such cases, we attempt to handle this scenario gracefully by
// invoking a custom handler. Ideally, if a user tries to launch a series that isn't viewable,
// (eg.: we can prompt them with an explanation and provide a link to the full study).
if (!referencedDisplaySetInstanceUID) {
const missingReferenceDisplaySetHandler = customizationService.getCustomization(
'missingReferenceDisplaySetHandler'
);
const { handled } = missingReferenceDisplaySetHandler();
if (handled) {
return;
}
}
const referencedDisplaySet = displaySetService.getDisplaySetByUID(
referencedDisplaySetInstanceUID
);
@@ -82,10 +82,36 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
displaySet: referencedDisplaySet,
metadata: referencedDisplaySetMetadata,
};
/**
* OnElementEnabled callback which is called after the cornerstoneExtension
* has enabled the element. Note: we delegate all the image rendering to
* cornerstoneExtension, so we don't need to do anything here regarding
* the image rendering, element enabling etc.
*/
const onElementEnabled = evt => {
setElement(evt.detail.element);
};
const onElementDisabled = () => {
setElement(null);
};
const storePresentationState = useCallback(() => {
viewportGrid?.viewports.forEach(({ viewportId }) => {
commandsManager.runCommand('storePresentation', {
viewportId,
});
});
}, [viewportGrid]);
const getCornerstoneViewport = useCallback(() => {
const { component: Component } = extensionManager.getModuleEntry(
'@ohif/extension-cornerstone.viewportModule.cornerstone'
);
// Todo: jump to the center of the first segment
return (
<OHIFCornerstoneViewport
<Component
{...props}
displaySets={[segDisplaySet]}
viewportOptions={{
@@ -97,35 +123,66 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
}}
onElementEnabled={evt => {
props.onElementEnabled?.(evt);
onElementEnabled(evt);
}}
/>
onElementDisabled={onElementDisabled}
></Component>
);
}, [viewportId, segDisplaySet, toolGroupId, props, viewportOptions]);
}, [viewportId, segDisplaySet, toolGroupId]);
const onSegmentChange = useCallback(
direction => {
utils.handleSegmentChange({
direction,
segDisplaySet: segDisplaySet,
viewportId,
selectedSegmentObjectIndex,
segmentationService,
});
},
[selectedSegmentObjectIndex]
);
const hydrateSEG = useCallback(() => {
// update the previously stored segmentationPresentation with the new viewportId
// presentation so that when we put the referencedDisplaySet back in the viewport
// it will have the correct segmentation representation hydrated
commandsManager.runCommand('updateStoredSegmentationPresentation', {
displaySet: segDisplaySet,
type: SegmentationRepresentations.Labelmap,
});
// update the previously stored positionPresentation with the new viewportId
// presentation so that when we put the referencedDisplaySet back in the viewport
// it will be in the correct position zoom and pan
commandsManager.runCommand('updateStoredPositionPresentation', {
viewportId,
displaySetInstanceUID: referencedDisplaySet.displaySetInstanceUID,
});
commandsManager.runCommand('loadSegmentationDisplaySetsForViewport', {
viewportId,
displaySetInstanceUIDs: [referencedDisplaySet.displaySetInstanceUID],
});
}, [commandsManager, viewportId, referencedDisplaySet, segDisplaySet]);
useEffect(() => {
if (segIsLoading) {
return;
}
// if not active viewport, return
if (viewportId !== activeViewportId) {
return;
}
promptHydrateSEG({
servicesManager,
viewportId,
segDisplaySet,
hydrateCallback: async () => {
await commandsManager.runCommand('hydrateSecondaryDisplaySet', {
displaySet: segDisplaySet,
viewportId,
});
return true;
},
preHydrateCallbacks: [storePresentationState],
hydrateCallback: hydrateSEG,
}).then(isHydrated => {
if (isHydrated) {
setIsHydrated(true);
}
});
}, [servicesManager, viewportId, segDisplaySet, segIsLoading, commandsManager, activeViewportId]);
}, [servicesManager, viewportId, segDisplaySet, segIsLoading, hydrateSEG]);
useEffect(() => {
// on new seg display set, remove all segmentations from all viewports
@@ -214,12 +271,7 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
// This creates a custom tool group which has the lifetime of this view
// only, and does NOT interfere with currently displayed segmentations.
toolGroup = createSEGToolGroupAndAddTools({
commandsManager,
toolGroupService,
customizationService,
toolGroupId,
});
toolGroup = createSEGToolGroupAndAddTools(toolGroupService, customizationService, toolGroupId);
return () => {
// remove the segmentation representations if seg displayset changed
@@ -231,6 +283,54 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
};
}, []);
const onStatusClick = useCallback(async () => {
// Before hydrating a SEG and make it added to all viewports in the grid
// that share the same frameOfReferenceUID, we need to store the viewport grid
// presentation state, so that we can restore it after hydrating the SEG. This is
// required if the user has changed the viewport (other viewport than SEG viewport)
// presentation state (w/l and invert) and then opens the SEG. If we don't store
// the presentation state, the viewport will be reset to the default presentation
storePresentationState();
hydrateSEG();
}, [storePresentationState, hydrateSEG]);
useEffect(() => {
viewportActionCornersService.addComponents([
{
viewportId,
id: 'viewportStatusComponent',
component: _getStatusComponent({
isHydrated,
onStatusClick,
}),
indexPriority: -100,
location: viewportActionCornersService.LOCATIONS.topLeft,
},
{
viewportId,
id: 'viewportActionArrowsComponent',
component: (
<ViewportActionArrows
key="actionArrows"
onArrowsClick={onSegmentChange}
className={
viewportId === activeViewportId ? 'visible' : 'invisible group-hover/pane:visible'
}
></ViewportActionArrows>
),
indexPriority: 0,
location: viewportActionCornersService.LOCATIONS.topRight,
},
]);
}, [
activeViewportId,
isHydrated,
onSegmentChange,
onStatusClick,
viewportActionCornersService,
viewportId,
]);
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
let childrenWithProps = null;
@@ -0,0 +1,59 @@
import React from 'react';
import { useTranslation } from 'react-i18next';
import { ViewportActionButton } from '@ohif/ui-next';
import { Icons, Tooltip, TooltipTrigger, TooltipContent } from '@ohif/ui-next';
export default function _getStatusComponent({ isHydrated, onStatusClick }) {
let ToolTipMessage = null;
let StatusIcon = null;
switch (isHydrated) {
case true:
StatusIcon = () => <Icons.ByName name="status-alert" />;
ToolTipMessage = () => <div>This Segmentation is loaded in the segmentation panel</div>;
break;
case false:
StatusIcon = () => (
<Icons.ByName
className="text-muted-foreground h-4 w-4"
name="status-untracked"
/>
);
ToolTipMessage = () => <div>Click LOAD to load segmentation.</div>;
}
const StatusArea = () => {
const { t } = useTranslation('Common');
const loadStr = t('LOAD');
return (
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
<StatusIcon />
<span className="ml-1">SEG</span>
</div>
{!isHydrated && (
<ViewportActionButton onInteraction={onStatusClick}>{loadStr}</ViewportActionButton>
)}
</div>
);
};
return (
<>
{ToolTipMessage && (
<Tooltip>
<TooltipTrigger asChild>
<span>
<StatusArea />
</span>
</TooltipTrigger>
<TooltipContent side="bottom">
<ToolTipMessage />
</TooltipContent>
</Tooltip>
)}
{!ToolTipMessage && <StatusArea />}
</>
);
}
File diff suppressed because it is too large. Load diff
+9 -9
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone-dicom-sr",
"version": "3.12.0-beta.7",
"version": "3.10.4",
"description": "OHIF extension for an SR Cornerstone Viewport",
"author": "OHIF",
"license": "MIT",
@@ -34,11 +34,11 @@
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
},
"peerDependencies": {
"@ohif/core": "3.12.0-beta.7",
"@ohif/extension-cornerstone": "3.12.0-beta.7",
"@ohif/extension-measurement-tracking": "3.12.0-beta.7",
"@ohif/ui": "3.12.0-beta.7",
"dcmjs": "0.43.1",
"@ohif/core": "3.10.4",
"@ohif/extension-cornerstone": "3.10.4",
"@ohif/extension-measurement-tracking": "3.10.4",
"@ohif/ui": "3.10.4",
"dcmjs": "*",
"dicom-parser": "^1.8.9",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
@@ -46,9 +46,9 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.32.5",
"@cornerstonejs/core": "^3.32.5",
"@cornerstonejs/tools": "^3.32.5",
"@cornerstonejs/adapters": "^3.11.6",
"@cornerstonejs/core": "^3.11.6",
"@cornerstonejs/tools": "^3.11.6",
"classnames": "^2.3.2"
}
}
@@ -32,7 +32,12 @@ const _generateReport = (measurementData, additionalFindingTypes, options: Optio
additionalFindingTypes
);
const report = MeasurementReport.generateReport(filteredToolState, metaData, options);
const report = MeasurementReport.generateReport(
filteredToolState,
metaData,
utilities.worldToImageCoords,
options
);
const { dataset } = report;
@@ -49,7 +54,7 @@ const _generateReport = (measurementData, additionalFindingTypes, options: Optio
const commandsModule = (props: withAppTypes) => {
const { servicesManager, extensionManager, commandsManager } = props;
const { customizationService } = servicesManager.services;
const { customizationService, viewportGridService, displaySetService } = servicesManager.services;
const actions = {
changeColorMeasurement: ({ uid }) => {
@@ -124,9 +129,6 @@ const commandsModule = (props: withAppTypes) => {
console.log('naturalizedReport missing imaging content', naturalizedReport);
throw new Error('Invalid report, no content');
}
if (!naturalizedReport.SOPClassUID) {
throw new Error('No sop class uid');
}
const onBeforeDicomStore = customizationService.getCustomization('onBeforeDicomStore');
@@ -158,18 +160,36 @@ const commandsModule = (props: withAppTypes) => {
* Loads measurements by hydrating and loading the SR for the given display set instance UID
* and displays it in the active viewport.
*/
hydrateStructuredReport: ({ displaySetInstanceUID }) => {
return hydrateStructuredReport(
loadSRMeasurements: ({ displaySetInstanceUID }) => {
const { SeriesInstanceUIDs } = hydrateStructuredReport(
{ servicesManager, extensionManager, commandsManager },
displaySetInstanceUID
);
const displaySets = displaySetService.getDisplaySetsForSeries(SeriesInstanceUIDs[0]);
if (displaySets.length) {
commandsManager.run('setDisplaySetsForViewports', {
viewportsToUpdate: [
{
viewportId: viewportGridService.getActiveViewportId(),
displaySetInstanceUIDs: [displaySets[0].displaySetInstanceUID],
},
],
});
}
},
};
const definitions = {
downloadReport: actions.downloadReport,
storeMeasurements: actions.storeMeasurements,
hydrateStructuredReport: actions.hydrateStructuredReport,
downloadReport: {
commandFn: actions.downloadReport,
},
storeMeasurements: {
commandFn: actions.storeMeasurements,
},
loadSRMeasurements: {
commandFn: actions.loadSRMeasurements,
},
};
return {
@@ -1,24 +1,25 @@
import PropTypes from 'prop-types';
import React, { useCallback, useEffect, useState } from 'react';
import React, { useCallback, useContext, useEffect, useState } from 'react';
import { useTranslation } from 'react-i18next';
import { ExtensionManager, useToolbar } from '@ohif/core';
import { setTrackingUniqueIdentifiersForElement } from '../tools/modules/dicomSRModule';
import { ViewportActionArrows } from '@ohif/ui-next';
import createReferencedImageDisplaySet from '../utils/createReferencedImageDisplaySet';
import { usePositionPresentationStore, OHIFCornerstoneViewport } from '@ohif/extension-cornerstone';
import { usePositionPresentationStore } from '@ohif/extension-cornerstone';
import { useViewportGrid } from '@ohif/ui-next';
import { useSystem } from '@ohif/core/src/contextProviders/SystemProvider';
import { Icons, Tooltip, TooltipTrigger, TooltipContent } from '@ohif/ui-next';
const MEASUREMENT_TRACKING_EXTENSION_ID = '@ohif/extension-measurement-tracking';
const SR_TOOLGROUP_BASE_NAME = 'SRToolGroup';
function OHIFCornerstoneSRMeasurementViewport(props) {
const { servicesManager } = useSystem();
const { children, dataSource, displaySets, viewportOptions } = props as {
children: React.ReactNode;
dataSource: unknown;
displaySets: AppTypes.DisplaySet[];
viewportOptions: AppTypes.ViewportOptions;
};
function OHIFCornerstoneSRMeasurementViewport(props: withAppTypes) {
const { children, dataSource, displaySets, viewportOptions, servicesManager, extensionManager } =
props;
const { displaySetService } = servicesManager.services;
const { displaySetService, viewportActionCornersService } = servicesManager.services;
const viewportId = viewportOptions.viewportId;
@@ -33,11 +34,40 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
const [viewportGrid, viewportGridService] = useViewportGrid();
const [measurementSelected, setMeasurementSelected] = useState(0);
const [measurementCount, setMeasurementCount] = useState(1);
const [activeImageDisplaySetData, setActiveImageDisplaySetData] = useState(null);
const [referencedDisplaySetMetadata, setReferencedDisplaySetMetadata] = useState(null);
const [element, setElement] = useState(null);
const { viewports, activeViewportId } = viewportGrid;
const { t } = useTranslation('Common');
// Optional hook into tracking extension, if present.
let trackedMeasurements;
const hasMeasurementTrackingExtension = extensionManager.registeredExtensionIds.includes(
MEASUREMENT_TRACKING_EXTENSION_ID
);
if (hasMeasurementTrackingExtension) {
const contextModule = extensionManager.getModuleEntry(
'@ohif/extension-measurement-tracking.contextModule.TrackedMeasurementsContext'
);
const tracked = useContext(contextModule.context);
trackedMeasurements = tracked?.[0];
}
/**
* Todo: what is this, not sure what it does regarding the react aspect,
* it is updating a local variable? which is not state.
*/
const [isLocked, setIsLocked] = useState(trackedMeasurements?.context?.trackedSeries?.length > 0);
/**
* Store the tracking identifiers per viewport in order to be able to
* show the SR measurements on the referenced image on the correct viewport,
* when multiple viewports are used.
*/
const setTrackingIdentifiers = useCallback(
measurementSelected => {
const { measurements } = srDisplaySet;
@@ -63,12 +93,22 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
const updateViewport = useCallback(
newMeasurementSelected => {
const { StudyInstanceUID, displaySetInstanceUID } = srDisplaySet;
const { StudyInstanceUID, displaySetInstanceUID, sopClassUids } = srDisplaySet;
if (!StudyInstanceUID || !displaySetInstanceUID) {
return;
}
if (sopClassUids && sopClassUids.length > 1) {
// Todo: what happens if there are multiple SOP Classes? Why we are
// not throwing an error?
console.warn('More than one SOPClassUID in the same series is not yet supported.');
}
// if (!srDisplaySet.measurements || !srDisplaySet.measurements.length) {
// return;
// }
_getViewportReferencedDisplaySetData(
srDisplaySet,
newMeasurementSelected,
@@ -86,7 +126,7 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
const { presentationIds } = viewportOptions;
const measurement = srDisplaySet.measurements[newMeasurementSelected];
setPositionPresentation(presentationIds.positionPresentationId, {
viewReference: measurement.viewReference || {
viewReference: {
referencedImageId: measurement.imageId,
},
});
@@ -100,6 +140,10 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
return null;
}
const { component: Component } = extensionManager.getModuleEntry(
'@ohif/extension-cornerstone.viewportModule.cornerstone'
);
const { measurements } = srDisplaySet;
const measurement = measurements[measurementSelected];
@@ -108,7 +152,7 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
}
return (
<OHIFCornerstoneViewport
<Component
{...props}
// should be passed second since we don't want SR displaySet to
// override the activeImageDisplaySetData
@@ -132,10 +176,27 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
onElementEnabled(evt);
}}
isJumpToMeasurementDisabled={true}
/>
></Component>
);
}, [activeImageDisplaySetData, viewportId, measurementSelected]);
const onMeasurementChange = useCallback(
direction => {
let newMeasurementSelected = measurementSelected;
newMeasurementSelected += direction;
if (newMeasurementSelected >= measurementCount) {
newMeasurementSelected = 0;
} else if (newMeasurementSelected < 0) {
newMeasurementSelected = measurementCount - 1;
}
setTrackingIdentifiers(newMeasurementSelected);
updateViewport(newMeasurementSelected);
},
[measurementSelected, measurementCount, updateViewport, setTrackingIdentifiers]
);
/**
Cleanup the SR viewport when the viewport is destroyed
*/
@@ -170,6 +231,8 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
if (!srDisplaySet.isLoaded) {
await srDisplaySet.load();
}
const numMeasurements = srDisplaySet.measurements.length;
setMeasurementCount(numMeasurements);
updateViewport(measurementSelected);
};
loadSR();
@@ -192,6 +255,42 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
updateSR();
}, [measurementSelected, element, setTrackingIdentifiers, srDisplaySet]);
useEffect(() => {
setIsLocked(trackedMeasurements?.context?.trackedSeries?.length > 0);
}, [trackedMeasurements]);
useEffect(() => {
viewportActionCornersService.addComponents([
{
viewportId,
id: 'viewportStatusComponent',
component: _getStatusComponent({
srDisplaySet,
viewportId,
isRehydratable: srDisplaySet.isRehydratable,
isLocked,
t,
servicesManager,
}),
indexPriority: -100,
location: viewportActionCornersService.LOCATIONS.topLeft,
},
{
viewportId,
id: 'viewportActionArrowsComponent',
index: 0,
component: (
<ViewportActionArrows
key="actionArrows"
onArrowsClick={onMeasurementChange}
></ViewportActionArrows>
),
indexPriority: 0,
location: viewportActionCornersService.LOCATIONS.topRight,
},
]);
}, [isLocked, onMeasurementChange, srDisplaySet, t, viewportActionCornersService, viewportId]);
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
let childrenWithProps = null;
@@ -228,6 +327,8 @@ OHIFCornerstoneSRMeasurementViewport.propTypes = {
children: PropTypes.node,
viewportLabel: PropTypes.string,
viewportOptions: PropTypes.object,
servicesManager: PropTypes.object.isRequired,
extensionManager: PropTypes.instanceOf(ExtensionManager).isRequired,
};
async function _getViewportReferencedDisplaySetData(
@@ -252,9 +353,6 @@ async function _getViewportReferencedDisplaySetData(
}
const referencedDisplaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
if (!referencedDisplaySet?.images) {
return { referencedDisplaySetMetadata: null, referencedDisplaySet: null };
}
const image0 = referencedDisplaySet.images[0];
const referencedDisplaySetMetadata = {
@@ -274,4 +372,130 @@ async function _getViewportReferencedDisplaySetData(
return { referencedDisplaySetMetadata, referencedDisplaySet };
}
function _getStatusComponent({
srDisplaySet,
viewportId,
isRehydratable,
isLocked,
t,
servicesManager,
}) {
const loadStr = t('LOAD');
// 1 - Incompatible
// 2 - Locked
// 3 - Rehydratable / Open
const state = isRehydratable && !isLocked ? 3 : isRehydratable && isLocked ? 2 : 1;
let ToolTipMessage = null;
let StatusIcon = null;
switch (state) {
case 1:
StatusIcon = () => (
<Icons.ByName
name="status-alert"
className="h-4 w-4"
/>
);
ToolTipMessage = () => (
<div>
This structured report is not compatible
<br />
with this application.
</div>
);
break;
case 2:
StatusIcon = () => (
<Icons.ByName
name="status-locked"
className="h-4 w-4"
/>
);
ToolTipMessage = () => (
<div>
This structured report is currently read-only
<br />
because you are tracking measurements in
<br />
another viewport.
</div>
);
break;
case 3:
StatusIcon = () => (
<Icons.ByName
className="text-muted-foreground h-4 w-4"
name="status-untracked"
/>
);
ToolTipMessage = () => <div>{`Click ${loadStr} to restore measurements.`}</div>;
}
const StatusArea = () => {
const { toolbarButtons: loadSRMeasurementsButtons, onInteraction } = useToolbar({
servicesManager,
buttonSection: 'loadSRMeasurements',
});
const commandOptions = {
displaySetInstanceUID: srDisplaySet.displaySetInstanceUID,
viewportId,
};
return (
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
<StatusIcon className="h-4 w-4" />
<span className="ml-1">SR</span>
</div>
{state === 3 && (
<>
{loadSRMeasurementsButtons.map(toolDef => {
if (!toolDef) {
return null;
}
const { id, Component, componentProps } = toolDef;
const tool = (
<Component
key={id}
id={id}
onInteraction={args => onInteraction({ ...args, ...commandOptions })}
{...componentProps}
/>
);
return <div key={id}>{tool}</div>;
})}
</>
)}
</div>
);
};
return (
<>
{ToolTipMessage && (
<Tooltip>
<TooltipTrigger asChild>
<span>
<StatusArea />
</span>
</TooltipTrigger>
<TooltipContent
side="bottom"
align="start"
>
<ToolTipMessage />
</TooltipContent>
</Tooltip>
)}
{!ToolTipMessage && <StatusArea />}
</>
);
}
export default OHIFCornerstoneSRMeasurementViewport;
@@ -1,5 +1,4 @@
import { utils, classes, DisplaySetService, Types as OhifTypes } from '@ohif/core';
import i18n from '@ohif/i18n';
import { utils, classes, DisplaySetService, Types } from '@ohif/core';
import { Enums as CSExtensionEnums } from '@ohif/extension-cornerstone';
import { adaptersSR } from '@cornerstonejs/adapters';
@@ -15,12 +14,8 @@ import { CodeNameCodeSequenceValues, CodingSchemeDesignators } from './enums';
const { sopClassDictionary } = utils;
const { CORNERSTONE_3D_TOOLS_SOURCE_NAME, CORNERSTONE_3D_TOOLS_SOURCE_VERSION } = CSExtensionEnums;
const { MetadataProvider: metadataProvider } = classes;
const {
TEXT_ANNOTATION_POSITION,
COMMENT_CODE,
CodeScheme: Cornerstone3DCodeScheme,
} = adaptersSR.Cornerstone3D;
const { ImageSet, MetadataProvider: metadataProvider } = classes;
const { CodeScheme: Cornerstone3DCodeScheme } = adaptersSR.Cornerstone3D;
type InstanceMetadata = Types.InstanceMetadata;
@@ -35,7 +30,6 @@ const sopClassUids = [
sopClassDictionary.BasicTextSR,
sopClassDictionary.EnhancedSR,
sopClassDictionary.ComprehensiveSR,
sopClassDictionary.Comprehensive3DSR,
];
const validateSameStudyUID = (uid: string, instances): void => {
@@ -54,7 +48,7 @@ const validateSameStudyUID = (uid: string, instances): void => {
* @param instances is a list of instances from THIS series that are not
* in this DICOM SR Display Set already.
*/
function addInstances(instances: InstanceMetadata[], _displaySetService: DisplaySetService) {
function addInstances(instances: InstanceMetadata[], displaySetService: DisplaySetService) {
this.instances.push(...instances);
utils.sortStudyInstances(this.instances);
// The last instance is the newest one, so is the one most interesting.
@@ -128,7 +122,6 @@ function _getDisplaySetsFromSeries(
sopClassUids,
instance,
addInstances,
label: SeriesDescription || `${i18n.t('Series')} ${SeriesNumber} - ${i18n.t('SR')}`,
};
displaySet.load = () => _load(displaySet, servicesManager, extensionManager);
@@ -221,12 +214,6 @@ async function _load(
});
}
function _measurementBelongsToDisplaySet({ measurement, displaySet }) {
return (
measurement.coords[0].ReferencedFrameOfReferenceSequence === displaySet.FrameOfReferenceUID
);
}
/**
* Checks if measurements can be added to a display set.
*
@@ -247,10 +234,18 @@ function _checkIfCanAddMeasurementsToDisplaySet(
measurement => measurement.loaded === false
);
if (!unloadedMeasurements.length || newDisplaySet.unsupported) {
if (
unloadedMeasurements.length === 0 ||
!(newDisplaySet instanceof ImageSet) ||
newDisplaySet.unsupported
) {
return;
}
// const { sopClassUids } = newDisplaySet;
// Create a Set for faster lookups
// const sopClassUidSet = new Set(sopClassUids);
// Create a Map to efficiently look up ImageIds by SOPInstanceUID and frame number
const imageIdMap = new Map<string, string>();
const imageIds = dataSource.getImageIdsForDisplaySet(newDisplaySet);
@@ -269,7 +264,6 @@ function _checkIfCanAddMeasurementsToDisplaySet(
for (let j = unloadedMeasurements.length - 1; j >= 0; j--) {
let measurement = unloadedMeasurements[j];
const is3DMeasurement = measurement.coords?.[0]?.ValueType === 'SCOORD3D';
const onBeforeSRAddMeasurement = customizationService.getCustomization(
'onBeforeSRAddMeasurement'
@@ -284,17 +278,9 @@ function _checkIfCanAddMeasurementsToDisplaySet(
}
// if it is 3d SR we can just add the SR annotation
if (
is3DSR &&
is3DMeasurement &&
_measurementBelongsToDisplaySet({ measurement, displaySet: newDisplaySet })
) {
_measurementBelongsToDisplaySet({ measurement, displaySet: newDisplaySet })
if (is3DSR) {
addSRAnnotation(measurement, null, null);
measurement.loaded = true;
measurement.displaySetInstanceUID = newDisplaySet.displaySetInstanceUID;
unloadedMeasurements.splice(j, 1);
continue;
}
@@ -368,8 +354,7 @@ function _measurementReferencesSOPInstanceUID(measurement, SOPInstanceUID, frame
* @param {Object} options.extensionManager - The extension manager.
* @returns {Array} An array containing the SOP class handler module.
*/
function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams) {
const { servicesManager, extensionManager } = params;
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
const getDisplaySetsFromSeries = instances => {
return _getDisplaySetsFromSeries(instances, servicesManager, extensionManager);
};
@@ -481,7 +466,11 @@ function _getMergedContentSequencesByTrackingUniqueIdentifiers(MeasurementGroups
* @returns {any} - The processed measurement result.
*/
function _processMeasurement(mergedContentSequence) {
if (mergedContentSequence.some(group => isScoordOr3d(group) && !isTextPosition(group))) {
if (
mergedContentSequence.some(
group => group.ValueType === 'SCOORD' || group.ValueType === 'SCOORD3D'
)
) {
return _processTID1410Measurement(mergedContentSequence);
}
@@ -519,25 +508,12 @@ function _processTID1410Measurement(mergedContentSequence) {
const NUMContentItems = mergedContentSequence.filter(group => group.ValueType === 'NUM');
const { ConceptNameCodeSequence: conceptNameItem } = graphicItem;
const { CodeValue: graphicValue, CodingSchemeDesignator: graphicDesignator } = conceptNameItem;
const graphicCode = `${graphicDesignator}:${graphicValue}`;
const pointDataItem = _getCoordsFromSCOORDOrSCOORD3D(graphicItem);
const is3DMeasurement = pointDataItem.ValueType === 'SCOORD3D';
const pointLength = is3DMeasurement ? 3 : 2;
const pointsLength = pointDataItem.GraphicData.length / pointLength;
const measurement = {
loaded: false,
labels: [],
coords: [pointDataItem],
coords: [_getCoordsFromSCOORDOrSCOORD3D(graphicItem)],
TrackingUniqueIdentifier: UIDREFContentItem.UID,
TrackingIdentifier: TrackingIdentifierContentItem.TextValue,
graphicCode,
is3DMeasurement,
pointsLength,
graphicType: pointDataItem.GraphicType,
};
NUMContentItems.forEach(item => {
@@ -588,12 +564,6 @@ function _processNonGeometricallyDefinedMeasurement(mergedContentSequence) {
item.ConceptNameCodeSequence.CodeValue === CodeNameCodeSequenceValues.FindingSite
);
const commentSites = mergedContentSequence.filter(
item =>
item.ConceptNameCodeSequence.CodingSchemeDesignator === COMMENT_CODE.schemeDesignator &&
item.ConceptNameCodeSequence.CodeValue === COMMENT_CODE.value
);
const measurement = {
loaded: false,
labels: [],
@@ -602,14 +572,6 @@ function _processNonGeometricallyDefinedMeasurement(mergedContentSequence) {
TrackingIdentifier: TrackingIdentifierContentItem.TextValue,
};
if (commentSites) {
for (const group of commentSites) {
if (group.TextValue) {
measurement.labels.push({ label: group.TextValue, value: '' });
}
}
}
if (
finding &&
CodingSchemeDesignators.CornerstoneCodeSchemes.includes(
@@ -761,17 +723,4 @@ function _getSequenceAsArray(sequence) {
return Array.isArray(sequence) ? sequence : [sequence];
}
function isScoordOr3d(group) {
return group.ValueType === 'SCOORD' || group.ValueType === 'SCOORD3D';
}
function isTextPosition(group) {
const concept = group.ConceptNameCodeSequence[0];
return (
concept &&
concept.CodeValue === TEXT_ANNOTATION_POSITION.value &&
concept.CodingSchemeDesignator === TEXT_ANNOTATION_POSITION.schemeDesignator
);
}
export default getSopClassHandlerModule;
+2 -1
View File
@@ -12,6 +12,7 @@ import {
utilities as csToolsUtils,
} from '@cornerstonejs/tools';
import { Types, MeasurementService } from '@ohif/core';
import { StackViewport, utilities as csUtils } from '@cornerstonejs/core';
import { Enums as CSExtensionEnums } from '@ohif/extension-cornerstone';
import DICOMSRDisplayTool from './tools/DICOMSRDisplayTool';
import SCOORD3DPointTool from './tools/SCOORD3DPointTool';
@@ -56,7 +57,7 @@ export default function init({
'SRSCOORD3DPoint',
POINT,
SRSCOOR3DProbeMapper.toAnnotation,
SRSCOOR3DProbeMapper.toMeasurement.bind(null, { servicesManager })
SRSCOOR3DProbeMapper.toMeasurement
);
// Modify annotation tools to use dashed lines on SR
@@ -1,7 +1,11 @@
import React from 'react';
import { SOPClassHandlerId, SOPClassHandlerId3D } from './id';
import { ViewportActionButton } from '@ohif/ui-next';
import i18n from '@ohif/i18n';
export default function onModeEnter({ servicesManager }) {
const { displaySetService } = servicesManager.services;
const { displaySetService, toolbarService } = servicesManager.services;
const displaySetCache = displaySetService.getDisplaySetCache();
const srDisplaySets = [...displaySetCache.values()].filter(
@@ -12,4 +16,24 @@ export default function onModeEnter({ servicesManager }) {
// New mode route, allow SRs to be hydrated again
ds.isHydrated = false;
});
toolbarService.addButtons([
{
// A base/default button for loading measurements. It is added to the toolbar below.
// Customizations to this button can be made in the mode or by another extension.
// For example, the button label can be changed and/or the command to clear
// the measurements can be dropped.
id: 'loadSRMeasurements',
component: props => (
<ViewportActionButton {...props}>{i18n.t('Common:LOAD')}</ViewportActionButton>
),
props: {
commands: ['clearMeasurements', 'loadSRMeasurements'],
},
},
]);
// The toolbar used in the viewport's status bar. Modes and extensions can further customize
// it to optionally add other buttons.
toolbarService.createButtonSection('loadSRMeasurements', ['loadSRMeasurements']);
}
@@ -1,4 +1,4 @@
import { type Types } from '@cornerstonejs/core';
import { Types, metaData, utilities as csUtils } from '@cornerstonejs/core';
import {
annotation,
drawing,
@@ -7,8 +7,13 @@ const SRSCOOR3DProbe = {
* @param {Object} cornerstone Cornerstone event data
* @return {Measurement} Measurement instance
*/
toMeasurement: ({ servicesManager, getValueTypeFromToolType }, csToolsEventDetail) => {
const { displaySetService } = servicesManager.services;
toMeasurement: (
csToolsEventDetail,
displaySetService,
CornerstoneViewportService,
getValueTypeFromToolType,
customizationService
) => {
const { annotation } = csToolsEventDetail;
const { metadata, data, annotationUID } = annotation;
@@ -17,25 +22,14 @@ const SRSCOOR3DProbe = {
return null;
}
const { toolName, FrameOfReferenceUID } = metadata;
const { toolName } = metadata;
const { points } = data.handles;
const displaySets = displaySetService
.getActiveDisplaySets()
.filter(ds => ds.FrameOfReferenceUID === FrameOfReferenceUID);
const displaySet = displaySets.filter(ds => ds.isReconstructable)[0] || displaySets[0];
const { StudyInstanceUID: referenceStudyUID, SeriesInstanceUID: referenceSeriesUID } =
displaySets[0] || {};
const displayText = getDisplayText(annotation);
return {
uid: annotationUID,
points,
metadata,
referenceStudyUID,
referenceSeriesUID,
displaySetInstanceUID: displaySet?.displaySetInstanceUID,
toolName: metadata.toolName,
label: data.label,
displayText: displayText,
@@ -62,10 +56,7 @@ function getDisplayText(annotation) {
}
}
return {
primary: displayText,
secondary: [],
};
return displayText;
}
export default SRSCOOR3DProbe;
@@ -1,12 +1,9 @@
import { Types, annotation } from '@cornerstonejs/tools';
import { metaData } from '@cornerstonejs/core';
import { adaptersSR } from '@cornerstonejs/adapters';
import getRenderableData from './getRenderableData';
import toolNames from '../tools/toolNames';
const { MeasurementReport } = adaptersSR.Cornerstone3D;
export default function addSRAnnotation(measurement, imageId, frameNumber) {
let toolName = toolNames.DICOMSRDisplay;
const renderableData = measurement.coords.reduce((acc, coordProps) => {
@@ -21,7 +18,6 @@ export default function addSRAnnotation(measurement, imageId, frameNumber) {
/** TODO: Read the tool name from the DICOM SR identification type in the future. */
let frameOfReferenceUID = null;
let planeRestriction = null;
if (imageId) {
const imagePlaneModule = metaData.get('imagePlaneModule', imageId);
@@ -29,29 +25,12 @@ export default function addSRAnnotation(measurement, imageId, frameNumber) {
}
if (valueType === 'SCOORD3D') {
const adapter = MeasurementReport.getAdapterForTrackingIdentifier(
measurement.TrackingIdentifier
);
if (!adapter) {
toolName = toolNames.SRSCOORD3DPoint;
}
toolName = toolNames.SRSCOORD3DPoint;
// get the ReferencedFrameOfReferenceUID from the measurement
frameOfReferenceUID = measurement.coords[0].ReferencedFrameOfReferenceSequence;
planeRestriction = {
FrameOfReferenceUID: frameOfReferenceUID,
point: graphicTypePoints[0][0],
};
}
// Store the view reference for use in initial navigation
measurement.viewReference = {
planeRestriction,
FrameOfReferenceUID: frameOfReferenceUID,
referencedImageId: imageId,
};
const SRAnnotation: Types.Annotation = {
annotationUID: TrackingUniqueIdentifier,
highlighted: false,
@@ -59,7 +38,6 @@ export default function addSRAnnotation(measurement, imageId, frameNumber) {
invalidated: false,
metadata: {
toolName,
planeRestriction,
valueType,
graphicType,
FrameOfReferenceUID: frameOfReferenceUID,
@@ -85,4 +63,5 @@ export default function addSRAnnotation(measurement, imageId, frameNumber) {
* was not triggering annotation_added events.
*/
annotation.state.addAnnotation(SRAnnotation);
console.debug('Adding SR annotation:', SRAnnotation);
}
@@ -1,11 +1,17 @@
import OHIF from '@ohif/core';
import { annotation } from '@cornerstonejs/tools';
import { NO_IMAGE_ID } from '@cornerstonejs/adapters';
const { log } = OHIF;
function getFilteredCornerstoneToolState(measurementData, additionalFindingTypes) {
const filteredToolState = {};
function addToFilteredToolState(annotation, toolType) {
const imageId = annotation.metadata?.referencedImageId ?? NO_IMAGE_ID;
if (!annotation.metadata?.referencedImageId) {
log.warn(`[DICOMSR] No referencedImageId found for ${toolType} ${annotation.id}`);
return;
}
const imageId = annotation.metadata.referencedImageId;
if (!filteredToolState[imageId]) {
filteredToolState[imageId] = {};
@@ -11,11 +11,7 @@ const { CodeScheme: Cornerstone3DCodeScheme } = adaptersSR.Cornerstone3D;
* @returns {string} The extracted label.
*/
export default function getLabelFromDCMJSImportedToolData(toolData) {
const { findingSites = [], finding, annotation } = toolData;
if (annotation.data.label) {
return annotation.data.label;
}
const { findingSites = [], finding } = toolData;
let freeTextLabel = findingSites.find(
fs => fs.CodeValue === Cornerstone3DCodeScheme.codeValues.CORNERSTONEFREETEXT
@@ -36,14 +36,6 @@ function getRenderableData({ GraphicType, GraphicData, ValueType, imageId }) {
ValueType,
imageId,
});
if (!imageId) {
// without the image id it's not possible to perform the calculations below
// these calculations also do not seem to be needed, since everything works
// just fine when we skip them. At least for SCOORD3D annotations.
return pointsWorld;
}
// We do not have an explicit draw circle svg helper in Cornerstone3D at
// this time, but we can use the ellipse svg helper to draw a circle, so
// here we reshape the data for that purpose.
@@ -98,13 +90,6 @@ function getRenderableData({ GraphicType, GraphicData, ValueType, imageId }) {
imageId,
});
if (!imageId) {
// without the image id it's not possible to perform the calculations below
// these calculations also do not seem to be needed, since everything works
// just fine when we skip them. At least for SCOORD3D annotations.
return pointsWorld;
}
const majorAxisStart = vec3.fromValues(...pointsWorld[0]);
const majorAxisEnd = vec3.fromValues(...pointsWorld[1]);
const minorAxisStart = vec3.fromValues(...pointsWorld[2]);
@@ -1,16 +1,15 @@
import { utilities, metaData, type Types } from '@cornerstonejs/core';
import { utilities, metaData } from '@cornerstonejs/core';
import OHIF, { DicomMetadataStore } from '@ohif/core';
import { vec3 } from 'gl-matrix';
import getLabelFromDCMJSImportedToolData from './getLabelFromDCMJSImportedToolData';
import { adaptersSR } from '@cornerstonejs/adapters';
import { annotation as CsAnnotation, type Types as ToolTypes } from '@cornerstonejs/tools';
import { annotation as CsAnnotation } from '@cornerstonejs/tools';
import { Enums as CSExtensionEnums } from '@ohif/extension-cornerstone';
const { locking } = CsAnnotation;
const { guid } = OHIF.utils;
const { MeasurementReport } = adaptersSR.Cornerstone3D;
const { MeasurementReport, CORNERSTONE_3D_TAG } = adaptersSR.Cornerstone3D;
const { CORNERSTONE_3D_TOOLS_SOURCE_NAME, CORNERSTONE_3D_TOOLS_SOURCE_VERSION } = CSExtensionEnums;
const supportedLegacyCornerstoneTags = ['cornerstoneTools@^4.0.0'];
const convertCode = (codingValues, code) => {
if (!code || code.CodingSchemeDesignator === 'CORNERSTONEJS') {
@@ -38,10 +37,8 @@ const convertSites = (codingValues, sites) => {
};
/**
* Hydrates a structured report
* Handles 2d and 3d hydration from SCOORD and SCOORD3D points
* For 3D hydration, chooses a volume display set to display with
* FOr 2D hydration, chooses the (first) display set containing the referenced image.
* Hydrates a structured report, for default viewports.
*
*/
export default function hydrateStructuredReport(
{ servicesManager, extensionManager, commandsManager }: withAppTypes,
@@ -91,7 +88,7 @@ export default function hydrateStructuredReport(
// Mapping of legacy datasets is now directly handled by adapters module
const datasetToUse = instance;
// Use CS3D adapters to generate toolState.
// Use dcmjs to generate toolState.
let storedMeasurementByAnnotationType = MeasurementReport.generateToolState(
datasetToUse,
// NOTE: we need to pass in the imageIds to dcmjs since the we use them
@@ -99,6 +96,7 @@ export default function hydrateStructuredReport(
// that measurements were added to the display set are the same order as
// the measurementGroups in the instance.
sopInstanceUIDToImageId,
utilities.imageToWorldCoords,
metaData
);
@@ -149,9 +147,6 @@ export default function hydrateStructuredReport(
for (let i = 0; i < imageIds.length; i++) {
const imageId = imageIds[i];
if (!imageId) {
continue;
}
const { SeriesInstanceUID, StudyInstanceUID } = metaData.get('instance', imageId);
if (!SeriesInstanceUIDs.includes(SeriesInstanceUID)) {
@@ -165,55 +160,38 @@ export default function hydrateStructuredReport(
}
}
/**
* Gets reference data for what frame of reference and the referenced
* image id, or for 3d measurements, the volumeId to apply this annotation to.
*/
function getReferenceData(toolData): ToolTypes.AnnotationMetadata {
// Add the measurement to toolState
// dcmjs and Cornerstone3D has structural defect in supporting multi-frame
// files, and looking up the imageId from sopInstanceUIDToImageId results
// in the wrong value.
const frameNumber = (toolData.annotation.data && toolData.annotation.data.frameNumber) || 1;
const imageId =
imageIdsForToolState[toolData.sopInstanceUid][frameNumber] ||
sopInstanceUIDToImageId[toolData.sopInstanceUid];
if (!imageId) {
return getReferenceData3D(toolData, servicesManager);
}
const instance = metaData.get('instance', imageId);
const {
FrameOfReferenceUID,
// SOPInstanceUID,
// SeriesInstanceUID,
// StudyInstanceUID,
} = instance;
return {
referencedImageId: imageId,
FrameOfReferenceUID,
};
}
Object.keys(hydratableMeasurementsInSR).forEach(annotationType => {
const toolDataForAnnotationType = hydratableMeasurementsInSR[annotationType];
toolDataForAnnotationType.forEach(toolData => {
// Add the measurement to toolState
// dcmjs and Cornerstone3D has structural defect in supporting multi-frame
// files, and looking up the imageId from sopInstanceUIDToImageId results
// in the wrong value.
const frameNumber = (toolData.annotation.data && toolData.annotation.data.frameNumber) || 1;
const imageId =
imageIdsForToolState[toolData.sopInstanceUid][frameNumber] ||
sopInstanceUIDToImageId[toolData.sopInstanceUid];
toolData.uid = guid();
const referenceData = getReferenceData(toolData);
const { imageId } = referenceData;
const instance = metaData.get('instance', imageId);
const {
FrameOfReferenceUID,
// SOPInstanceUID,
// SeriesInstanceUID,
// StudyInstanceUID,
} = instance;
const annotation = {
annotationUID: toolData.annotation.annotationUID,
data: toolData.annotation.data,
metadata: {
...referenceData,
toolName: annotationType,
referencedImageId: imageId,
FrameOfReferenceUID,
},
};
utilities.updatePlaneRestriction(annotation.data.handles.points, annotation.metadata);
const source = measurementService.getSource(
CORNERSTONE_3D_TOOLS_SOURCE_NAME,
@@ -247,7 +225,7 @@ export default function hydrateStructuredReport(
locking.setAnnotationLocked(newAnnotationUID, true);
}
if (imageId && !imageIds.includes(imageId)) {
if (!imageIds.includes(imageId)) {
imageIds.push(imageId);
}
});
@@ -260,92 +238,3 @@ export default function hydrateStructuredReport(
SeriesInstanceUIDs,
};
}
/**
* For 3d annotations, there are often several display sets which could
* be used to display the annotation. Choose the first annotation with the
* same frame of reference that is reconstructable, or the first display set
* otherwise.
*/
function chooseDisplaySet(displaySets, annotation) {
if (!displaySets?.length) {
console.warn('No display set found for', annotation);
return;
}
if (displaySets.length === 1) {
return displaySets[0];
}
const volumeDs = displaySets.find(ds => ds.isReconstructable);
if (volumeDs) {
return volumeDs;
}
return displaySets[0];
}
/**
* Gets the additional reference data appropriate for a 3d reference.
* This will choose a volume id, frame of reference and a plane restriction.
*/
function getReferenceData3D(toolData, servicesManager: Types.ServicesManager) {
const { FrameOfReferenceUID } = toolData.annotation.metadata;
const { points } = toolData.annotation.data.handles;
const { displaySetService } = servicesManager.services;
const displaySetsFOR = displaySetService.getDisplaySetsBy(
ds => ds.FrameOfReferenceUID === FrameOfReferenceUID
);
if (!displaySetsFOR.length || !points?.length) {
return {
FrameOfReferenceUID,
};
}
const ds = chooseDisplaySet(displaySetsFOR, toolData.annotation);
const cameraView = chooseCameraView(ds, points);
const viewReference = {
...cameraView,
volumeId: ds.displaySetInstanceUID,
FrameOfReferenceUID,
};
utilities.updatePlaneRestriction(points, viewReference);
return viewReference;
}
/**
* Chooses a possible camera view - right now this is fairly basic,
* just setting the unknowns to null.
*/
function chooseCameraView(_ds, points) {
const selectedPoints = choosePoints(points);
const cameraFocalPoint = <Point3>centerOf(selectedPoints);
// These are sufficient to be null for now and can be set on first view
let viewPlaneNormal: Types.Point3 = null;
let viewUp: Types.Point3 = null;
return {
cameraFocalPoint,
viewPlaneNormal,
viewUp,
};
}
function centerOf(points) {
const scale = 1 / points.length;
const center = vec3.create();
for (const point of points) {
vec3.scaleAndAdd(center, center, point, scale);
}
return center;
}
function choosePoints(points) {
if (points.length === 1 || points.length === 2) {
return points;
}
const firstIndex = 0;
const secondIndex = Math.ceil(points.length / 4);
const thirdIndex = Math.ceil(points.length / 2);
// TODO - check if colinear, if so try to find another 3 points.
const newPoints = [points[firstIndex], points[secondIndex], points[thirdIndex]];
return newPoints;
}
@@ -22,20 +22,13 @@ export default function isRehydratable(displaySet, mappings) {
const { measurements } = displaySet;
for (let i = 0; i < measurements.length; i++) {
const measurement = measurements[i];
if (!measurement) {
continue;
}
const { TrackingIdentifier = '', graphicType, graphicCode, pointsLength } = measurement;
if (!TrackingIdentifier && !graphicType) {
console.warn('No tracking identifier or graphicType for measurement ', measurement);
const { TrackingIdentifier } = measurements[i] || {};
if (!TrackingIdentifier) {
console.warn('No tracking identifier for measurement ', measurements[i]);
continue;
}
const adapter = MeasurementReport.getAdapterForTrackingIdentifier(TrackingIdentifier);
const adapters = MeasurementReport.getAdaptersForTypes(graphicCode, graphicType, pointsLength);
const hydratable =
(adapter && mappingDefinitions.has(adapter.toolType)) ||
(adapters && adapters.some(adapter => mappingDefinitions.has(adapter.toolType)));
const hydratable = adapter && mappingDefinitions.has(adapter.toolType);
if (hydratable) {
return true;
File diff suppressed because it is too large. Load diff
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone-dynamic-volume",
"version": "3.12.0-beta.7",
"version": "3.10.4",
"description": "OHIF extension for 4D volumes data",
"author": "OHIF",
"license": "MIT",
@@ -29,12 +29,12 @@
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
},
"peerDependencies": {
"@ohif/core": "3.12.0-beta.7",
"@ohif/extension-cornerstone": "3.12.0-beta.7",
"@ohif/extension-default": "3.12.0-beta.7",
"@ohif/i18n": "3.12.0-beta.7",
"@ohif/ui": "3.12.0-beta.7",
"dcmjs": "0.43.1",
"@ohif/core": "3.10.4",
"@ohif/extension-cornerstone": "3.10.4",
"@ohif/extension-default": "3.10.4",
"@ohif/i18n": "3.10.4",
"@ohif/ui": "3.10.4",
"dcmjs": "*",
"dicom-parser": "^1.8.21",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
@@ -42,8 +42,8 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/core": "^3.32.5",
"@cornerstonejs/tools": "^3.32.5",
"@cornerstonejs/core": "^3.11.6",
"@cornerstonejs/tools": "^3.11.6",
"classnames": "^2.3.2"
}
}
@@ -5,8 +5,6 @@ import { PanelSegmentation } from '@ohif/extension-cornerstone';
import DynamicExport from './panels/DynamicExport';
function getPanelModule({ commandsManager, extensionManager, servicesManager, configuration }) {
const { toolbarService } = servicesManager.services;
const wrappedDynamicDataPanel = () => {
return (
<DynamicDataPanel
@@ -21,7 +19,7 @@ function getPanelModule({ commandsManager, extensionManager, servicesManager, co
return (
<>
<Toolbox
buttonSectionId={toolbarService.sections.dynamicToolbox}
buttonSectionId="dynamic-toolbox"
title="Threshold Tools"
/>
<PanelSegmentation
File diff suppressed because it is too large. Load diff
+11 -11
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone",
"version": "3.12.0-beta.7",
"version": "3.10.4",
"description": "OHIF extension for Cornerstone",
"author": "OHIF",
"license": "MIT",
@@ -38,10 +38,10 @@
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
"@cornerstonejs/codec-openjpeg": "^1.2.4",
"@cornerstonejs/codec-openjph": "^2.4.5",
"@cornerstonejs/dicom-image-loader": "^3.32.5",
"@ohif/core": "3.12.0-beta.7",
"@ohif/ui": "3.12.0-beta.7",
"dcmjs": "0.43.1",
"@cornerstonejs/dicom-image-loader": "^3.11.6",
"@ohif/core": "3.10.4",
"@ohif/ui": "3.10.4",
"dcmjs": "*",
"dicom-parser": "^1.8.21",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
@@ -51,12 +51,12 @@
},
"dependencies": {
"@babel/runtime": "^7.20.13",
"@cornerstonejs/adapters": "^3.32.5",
"@cornerstonejs/ai": "^3.32.5",
"@cornerstonejs/core": "^3.32.5",
"@cornerstonejs/labelmap-interpolation": "^3.32.5",
"@cornerstonejs/polymorphic-segmentation": "^3.32.5",
"@cornerstonejs/tools": "^3.32.5",
"@cornerstonejs/adapters": "^3.11.6",
"@cornerstonejs/ai": "^3.11.6",
"@cornerstonejs/core": "^3.11.6",
"@cornerstonejs/labelmap-interpolation": "^3.11.6",
"@cornerstonejs/polymorphic-segmentation": "^3.11.6",
"@cornerstonejs/tools": "^3.11.6",
"@itk-wasm/morphological-contour-interpolation": "1.1.0",
"@kitware/vtk.js": "32.12.0",
"html2canvas": "^1.4.1",
@@ -2,11 +2,6 @@
width: 100%;
height: 100%; /* MUST have `height` to prevent resize infinite loop */
position: relative;
/* Prevent text selection on the entire viewport wrapper */
user-select: none;
-webkit-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
}
.cornerstone-viewport-element {
@@ -21,26 +16,4 @@
/* Prevents the entire page from getting larger
when the magnify tool is near the sides/corners of the page */
overflow: hidden;
/* Prevent text selection on the viewport element */
user-select: none;
-webkit-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
}
/* Prevent text selection on overlay elements */
.noselect {
user-select: none;
-webkit-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
}
/* Ensure all elements within viewport wrapper prevent text selection */
.viewport-wrapper * {
user-select: none;
-webkit-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
}
@@ -1,7 +1,9 @@
import React, { useEffect, useRef, useCallback, useState } from 'react';
import { useResizeDetector } from 'react-resize-detector';
import * as cs3DTools from '@cornerstonejs/tools';
import { Enums, eventTarget, getEnabledElement } from '@cornerstonejs/core';
import { MeasurementService, useViewportRef } from '@ohif/core';
import { MeasurementService } from '@ohif/core';
import { AllInOneMenu } from '@ohif/ui-next';
import { useViewportDialog } from '@ohif/ui-next';
import type { Types as csTypes } from '@cornerstonejs/core';
@@ -13,6 +15,8 @@ import CinePlayer from '../components/CinePlayer';
import type { Types } from '@ohif/core';
import OHIFViewportActionCorners from '../components/OHIFViewportActionCorners';
import { getWindowLevelActionMenu } from '../components/WindowLevelActionMenu/getWindowLevelActionMenu';
import { getViewportDataOverlaySettingsMenu } from '../components/ViewportDataOverlaySettingMenu';
import { getViewportPresentations } from '../utils/presentations/getViewportPresentations';
import { useSynchronizersStore } from '../stores/useSynchronizersStore';
import ActiveViewportBehavior from '../utils/ActiveViewportBehavior';
@@ -20,9 +24,6 @@ import { WITH_NAVIGATION } from '../services/ViewportService/CornerstoneViewport
const STACK = 'stack';
// Cache for viewport dimensions, persists across component remounts
const viewportDimensions = new Map<string, { width: number; height: number }>();
// Todo: This should be done with expose of internal API similar to react-vtkjs-viewport
// Then we don't need to worry about the re-renders if the props change.
const OHIFCornerstoneViewport = React.memo(
@@ -40,6 +41,7 @@ const OHIFCornerstoneViewport = React.memo(
viewportOptions,
displaySetOptions,
servicesManager,
commandsManager,
onElementEnabled,
// eslint-disable-next-line react/prop-types
onElementDisabled,
@@ -81,7 +83,6 @@ const OHIFCornerstoneViewport = React.memo(
const [scrollbarHeight, setScrollbarHeight] = useState('100px');
const [enabledVPElement, setEnabledVPElement] = useState(null);
const elementRef = useRef() as React.MutableRefObject<HTMLDivElement>;
const viewportRef = useViewportRef(viewportId);
const {
displaySetService,
@@ -91,6 +92,7 @@ const OHIFCornerstoneViewport = React.memo(
cornerstoneViewportService,
segmentationService,
cornerstoneCacheService,
viewportActionCornersService,
customizationService,
measurementService,
} = servicesManager.services;
@@ -103,44 +105,12 @@ const OHIFCornerstoneViewport = React.memo(
}, [elementRef]);
// useCallback for onResize
const onResize = useCallback(
(entries: ResizeObserverEntry[]) => {
if (elementRef.current && entries?.length) {
const entry = entries[0];
const { width, height } = entry.contentRect;
const prevDimensions = viewportDimensions.get(viewportId) || { width: 0, height: 0 };
// Check if dimensions actually changed and then only resize if they have changed
const hasDimensionsChanged =
prevDimensions.width !== width || prevDimensions.height !== height;
if (width > 0 && height > 0 && hasDimensionsChanged) {
viewportDimensions.set(viewportId, { width, height });
// Perform resize operations
cornerstoneViewportService.resize();
setImageScrollBarHeight();
}
}
},
[viewportId, elementRef, cornerstoneViewportService, setImageScrollBarHeight]
);
useEffect(() => {
const element = elementRef.current;
if (!element) {
return;
const onResize = useCallback(() => {
if (elementRef.current) {
cornerstoneViewportService.resize();
setImageScrollBarHeight();
}
const resizeObserver = new ResizeObserver(onResize);
resizeObserver.observe(element);
// Cleanup function
return () => {
resizeObserver.unobserve(element);
resizeObserver.disconnect();
};
}, [onResize]);
}, [elementRef]);
const cleanUpServices = useCallback(
viewportInfo => {
@@ -151,8 +121,16 @@ const OHIFCornerstoneViewport = React.memo(
syncGroupService.removeViewportFromSyncGroup(viewportId, renderingEngineId, syncGroups);
segmentationService.clearSegmentationRepresentations(viewportId);
viewportActionCornersService.clear(viewportId);
},
[viewportId, segmentationService, syncGroupService, toolGroupService]
[
viewportId,
segmentationService,
syncGroupService,
toolGroupService,
viewportActionCornersService,
]
);
const elementEnabledHandler = useCallback(
@@ -220,7 +198,6 @@ const OHIFCornerstoneViewport = React.memo(
}
cornerstoneViewportService.disableElement(viewportId);
viewportRef.unregister();
eventTarget.removeEventListener(Enums.Events.ELEMENT_ENABLED, elementEnabledHandler);
};
@@ -304,6 +281,79 @@ const OHIFCornerstoneViewport = React.memo(
loadViewportData();
}, [viewportOptions, displaySets, dataSource]);
/**
* There are two scenarios for jump to click
* 1. Current viewports contain the displaySet that the annotation was drawn on
* 2. Current viewports don't contain the displaySet that the annotation was drawn on
* and we need to change the viewports displaySet for jumping.
* Since measurement_jump happens via events and listeners, the former case is handled
* by the measurement_jump direct callback, but the latter case is handled first by
* the viewportGrid to set the correct displaySet on the viewport, AND THEN we check
* the cache for jumping to see if there is any jump queued, then we jump to the correct slice.
*/
useEffect(() => {
if (isJumpToMeasurementDisabled) {
return;
}
const { unsubscribe } = measurementService.subscribe(
MeasurementService.EVENTS.JUMP_TO_MEASUREMENT_VIEWPORT,
event => handleJumpToMeasurement(event, elementRef, viewportId, cornerstoneViewportService)
);
return () => {
unsubscribe();
};
}, [displaySets, elementRef, viewportId, isJumpToMeasurementDisabled, servicesManager]);
// Set up the window level action menu in the viewport action corners.
useEffect(() => {
const windowLevelActionMenu = customizationService.getCustomization(
'viewportActionMenu.windowLevelActionMenu'
);
const segmentationOverlay = customizationService.getCustomization(
'viewportActionMenu.segmentationOverlay'
);
if (windowLevelActionMenu?.enabled) {
viewportActionCornersService.addComponent({
viewportId,
id: 'windowLevelActionMenu',
component: getWindowLevelActionMenu({
viewportId,
element: elementRef.current,
displaySets,
servicesManager,
commandsManager,
location: windowLevelActionMenu.location,
verticalDirection: AllInOneMenu.VerticalDirection.TopToBottom,
horizontalDirection: AllInOneMenu.HorizontalDirection.RightToLeft,
}),
location: windowLevelActionMenu.location,
});
}
if (segmentationOverlay?.enabled) {
viewportActionCornersService.addComponent({
viewportId,
id: 'segmentation',
component: getViewportDataOverlaySettingsMenu({
viewportId,
element: elementRef.current,
displaySets,
servicesManager,
commandsManager,
location: segmentationOverlay.location,
}),
location: segmentationOverlay.location,
});
}
}, [displaySets, viewportId, viewportActionCornersService, servicesManager, commandsManager]);
const { ref: resizeRef } = useResizeDetector({
onResize,
});
const Notification = customizationService.getCustomization('ui.notificationComponent');
return (
@@ -314,12 +364,9 @@ const OHIFCornerstoneViewport = React.memo(
style={{ height: '100%', width: '100%' }}
onContextMenu={e => e.preventDefault()}
onMouseDown={e => e.preventDefault()}
data-viewportid={viewportId}
ref={el => {
resizeRef.current = el;
elementRef.current = el;
if (el) {
viewportRef.register(el);
}
}}
></div>
<CornerstoneOverlays
@@ -361,6 +408,54 @@ const OHIFCornerstoneViewport = React.memo(
areEqual
);
// Helper function to handle jumping to measurements
function handleJumpToMeasurement(event, elementRef, viewportId, cornerstoneViewportService) {
const { measurement, isConsumed } = event;
if (!measurement || isConsumed) {
return;
}
const enabledElement = getEnabledElement(elementRef.current);
if (!enabledElement) {
return;
}
const viewport = enabledElement.viewport as csTypes.IStackViewport | csTypes.IVolumeViewport;
const { metadata, displaySetInstanceUID } = measurement;
const viewportDisplaySets = cornerstoneViewportService.getViewportDisplaySets(viewportId);
const showingDisplaySet = viewportDisplaySets.find(
ds => ds.displaySetInstanceUID === displaySetInstanceUID
);
let metadataToUse = metadata;
// if it is not showing the displaySet we need to remove the FOR from the metadata
if (!showingDisplaySet) {
metadataToUse = {
...metadata,
FrameOfReferenceUID: undefined,
};
}
// Todo: make it work with cases where we want to define FOR based measurements too
if (!viewport.isReferenceViewable(metadataToUse, WITH_NAVIGATION)) {
return;
}
try {
viewport.setViewReference(metadata);
viewport.render();
} catch (e) {
console.warn('Unable to apply', metadata, e);
}
cs3DTools.annotation.selection.setAnnotationSelected(measurement.uid);
event?.consume?.();
}
function _rehydrateSynchronizers(viewportId: string, syncGroupService: any) {
const { synchronizersStore } = useSynchronizersStore.getState();
const synchronizers = synchronizersStore[viewportId];
@@ -421,18 +516,22 @@ OHIFCornerstoneViewport.displayName = 'OHIFCornerstoneViewport';
function areEqual(prevProps, nextProps) {
if (nextProps.needsRerendering) {
console.debug('OHIFCornerstoneViewport: Rerender caused by: needsRerendering');
return false;
}
if (prevProps.displaySets.length !== nextProps.displaySets.length) {
console.debug('OHIFCornerstoneViewport: Rerender caused by: displaySets length change');
return false;
}
if (prevProps.viewportOptions.orientation !== nextProps.viewportOptions.orientation) {
console.debug('OHIFCornerstoneViewport: Rerender caused by: orientation change');
return false;
}
if (prevProps.viewportOptions.toolGroupId !== nextProps.viewportOptions.toolGroupId) {
console.debug('OHIFCornerstoneViewport: Rerender caused by: toolGroupId change');
return false;
}
@@ -440,10 +539,12 @@ function areEqual(prevProps, nextProps) {
nextProps.viewportOptions.viewportType &&
prevProps.viewportOptions.viewportType !== nextProps.viewportOptions.viewportType
) {
console.debug('OHIFCornerstoneViewport: Rerender caused by: viewportType change');
return false;
}
if (nextProps.viewportOptions.needsRerendering) {
console.debug('OHIFCornerstoneViewport: Rerender caused by: viewportOptions.needsRerendering');
return false;
}
@@ -451,6 +552,7 @@ function areEqual(prevProps, nextProps) {
const nextDisplaySets = nextProps.displaySets;
if (prevDisplaySets.length !== nextDisplaySets.length) {
console.debug('OHIFCornerstoneViewport: Rerender caused by: displaySets length mismatch');
return false;
}
@@ -463,11 +565,13 @@ function areEqual(prevProps, nextProps) {
);
if (!foundDisplaySet) {
console.debug('OHIFCornerstoneViewport: Rerender caused by: displaySet not found');
return false;
}
// check they contain the same image
if (foundDisplaySet.images?.length !== prevDisplaySet.images?.length) {
console.debug('OHIFCornerstoneViewport: Rerender caused by: images length mismatch');
return false;
}
@@ -475,6 +579,7 @@ function areEqual(prevProps, nextProps) {
if (foundDisplaySet.images?.length) {
for (let j = 0; j < foundDisplaySet.images.length; j++) {
if (foundDisplaySet.images[j].imageId !== prevDisplaySet.images[j].imageId) {
console.debug('OHIFCornerstoneViewport: Rerender caused by: imageId mismatch');
return false;
}
}
@@ -484,4 +589,16 @@ function areEqual(prevProps, nextProps) {
return true;
}
// Helper function to check if display sets have changed
function haveDisplaySetsChanged(prevDisplaySets, currentDisplaySets) {
if (prevDisplaySets.length !== currentDisplaySets.length) {
return true;
}
return currentDisplaySets.some((currentDS, index) => {
const prevDS = prevDisplaySets[index];
return currentDS.displaySetInstanceUID !== prevDS.displaySetInstanceUID;
});
}
export default OHIFCornerstoneViewport;
@@ -1,8 +1,7 @@
import React, { useCallback, useEffect, useMemo, useState } from 'react';
import { vec3 } from 'gl-matrix';
import PropTypes from 'prop-types';
import { metaData, Enums, utilities, eventTarget } from '@cornerstonejs/core';
import { Enums as csToolsEnums, UltrasoundPleuraBLineTool } from '@cornerstonejs/tools';
import { metaData, Enums, utilities } from '@cornerstonejs/core';
import type { ImageSliceData } from '@cornerstonejs/core/types';
import { ViewportOverlay } from '@ohif/ui-next';
import type { InstanceMetadata } from '@ohif/core/src/types';
@@ -11,7 +10,6 @@ import { utils } from '@ohif/core';
import { StackViewportData, VolumeViewportData } from '../../types/CornerstoneCacheService';
import './CustomizableViewportOverlay.css';
import { useViewportRendering } from '../../hooks';
const EPSILON = 1e-4;
const { formatPN } = utils;
@@ -69,8 +67,6 @@ function CustomizableViewportOverlay({
servicesManager.services;
const [voi, setVOI] = useState({ windowCenter: null, windowWidth: null });
const [scale, setScale] = useState(1);
const [annotationState, setAnnotationState] = useState(0);
const { isViewportBackgroundLight: isLight } = useViewportRendering(viewportId);
const { imageIndex } = imageSliceData;
// Historical usage defined the overlays as separate items due to lack of
@@ -134,20 +130,6 @@ function CustomizableViewportOverlay({
};
}, [viewportId, viewportData, voi, element]);
const annotationModified = useCallback(evt => {
if (evt.detail.annotation.metadata.toolName === UltrasoundPleuraBLineTool.toolName) {
// Update the annotation state to trigger a re-render
setAnnotationState(prevState => prevState + 1);
}
}, []);
useEffect(() => {
eventTarget.addEventListener(csToolsEnums.Events.ANNOTATION_MODIFIED, annotationModified);
return () => {
eventTarget.removeEventListener(csToolsEnums.Events.ANNOTATION_MODIFIED, annotationModified);
};
}, [annotationModified]);
/**
* Updating the scale when the viewport changes its zoom
*/
@@ -188,7 +170,6 @@ function CustomizableViewportOverlay({
viewportId,
servicesManager,
customization: item,
isLight,
formatters: {
formatPN,
formatDate: formatDICOMDate,
@@ -225,7 +206,6 @@ function CustomizableViewportOverlay({
voi,
scale,
instanceNumber,
annotationState,
]
);
@@ -239,7 +219,6 @@ function CustomizableViewportOverlay({
instanceNumber,
viewportId,
toolGroupService,
isLight,
};
return (
@@ -262,8 +241,6 @@ function CustomizableViewportOverlay({
topRight={getContent(topRightCustomization, 'topRightOverlayItem')}
bottomLeft={getContent(bottomLeftCustomization, 'bottomLeftOverlayItem')}
bottomRight={getContent(bottomRightCustomization, 'bottomRightOverlayItem')}
color={isLight ? 'text-neutral-dark' : 'text-neutral-light'}
shadowClass={isLight ? 'shadow-light' : 'shadow-dark'}
/>
);
}
@@ -398,7 +375,6 @@ function OverlayItem(props) {
/**
* Window Level / Center Overlay item
* //
*/
function VOIOverlayItem({ voi, customization }: OverlayItemProps) {
const { windowWidth, windowCenter } = voi;
@@ -411,9 +387,9 @@ function VOIOverlayItem({ voi, customization }: OverlayItemProps) {
className="overlay-item flex flex-row"
style={{ color: customization?.color }}
>
<span className="mr-0.5 shrink-0 opacity-[0.70]">W:</span>
<span className="mr-0.5 shrink-0 opacity-[0.67]">W:</span>
<span className="mr-2.5 shrink-0">{windowWidth.toFixed(0)}</span>
<span className="mr-0.5 shrink-0 opacity-[0.70]">L:</span>
<span className="mr-0.5 shrink-0 opacity-[0.67]">L:</span>
<span className="shrink-0">{windowCenter.toFixed(0)}</span>
</div>
);
@@ -428,7 +404,7 @@ function ZoomOverlayItem({ scale, customization }: OverlayItemProps) {
className="overlay-item flex flex-row"
style={{ color: (customization && customization.color) || undefined }}
>
<span className="mr-0.5 shrink-0 opacity-[0.70]">Zoom:</span>
<span className="mr-0.5 shrink-0 opacity-[0.67]">Zoom:</span>
<span>{scale.toFixed(2)}x</span>
</div>
);
@@ -452,7 +428,7 @@ function InstanceNumberOverlayItem({
<span>
{instanceNumber !== undefined && instanceNumber !== null ? (
<>
<span className="mr-0.5 shrink-0 opacity-[0.70]">I:</span>
<span className="mr-0.5 shrink-0 opacity-[0.67]">I:</span>
<span>{`${instanceNumber} (${imageIndex + 1}/${numberOfSlices})`}</span>
</>
) : (
@@ -63,7 +63,7 @@ function CornerstoneImageScrollbar({
}
const { viewportType } = viewportData;
const eventId =
(viewportType === Enums.ViewportType.STACK && Enums.Events.STACK_NEW_IMAGE) ||
(viewportType === Enums.ViewportType.STACK && Enums.Events.STACK_VIEWPORT_SCROLL) ||
(viewportType === Enums.ViewportType.ORTHOGRAPHIC && Enums.Events.VOLUME_NEW_IMAGE) ||
Enums.Events.IMAGE_RENDERED;
@@ -72,11 +72,11 @@ function CornerstoneImageScrollbar({
if (!viewport || viewport instanceof VolumeViewport3D) {
return;
}
const { imageIndex, newImageIdIndex = imageIndex, imageIdIndex } = event.detail;
const { imageIndex, newImageIdIndex = imageIndex } = event.detail;
const numberOfSlices = viewport.getNumberOfSlices();
// find the index of imageId in the imageIds
setImageSliceData({
imageIndex: newImageIdIndex ?? imageIdIndex,
imageIndex: newImageIdIndex,
numberOfSlices,
});
};
@@ -11,22 +11,18 @@
.ViewportOrientationMarkers .top-mid {
top: 0.38rem;
left: 50%;
transform: translateX(-50%);
}
.ViewportOrientationMarkers .left-mid {
top: 50%;
top: 47%;
left: 0.38rem;
transform: translateY(-50%);
}
.ViewportOrientationMarkers .right-mid {
top: 50%;
top: 47%;
left: calc(100% - var(--marker-width) - var(--scrollbar-width));
transform: translateY(-50%);
}
.ViewportOrientationMarkers .bottom-mid {
top: calc(100% - var(--marker-height) - 0.6rem);
left: 50%;
transform: translateX(-50%);
left: 47%;
}
.ViewportOrientationMarkers .right-mid .orientation-marker-value {
display: flex;
@@ -1,11 +1,11 @@
import React, { useEffect, useState, useMemo } from 'react';
import classNames from 'classnames';
import { metaData, Enums, getEnabledElement } from '@cornerstonejs/core';
import { metaData, Enums, Types, getEnabledElement } from '@cornerstonejs/core';
import { utilities } from '@cornerstonejs/tools';
import { vec3 } from 'gl-matrix';
import './ViewportOrientationMarkers.css';
import { useViewportRendering } from '../../hooks';
const { getOrientationStringLPS, invertOrientationStringLPS } = utilities.orientation;
function ViewportOrientationMarkers({
@@ -16,36 +16,49 @@ function ViewportOrientationMarkers({
servicesManager,
orientationMarkers = ['top', 'left'],
}: withAppTypes) {
const [cameraModifiedTime, setCameraModifiedTime] = useState(0);
const { isViewportBackgroundLight: isLight } = useViewportRendering(viewportId);
// Rotation is in degrees
const [rotation, setRotation] = useState(0);
const [flipHorizontal, setFlipHorizontal] = useState(false);
const [flipVertical, setFlipVertical] = useState(false);
const { cornerstoneViewportService } = servicesManager.services;
useEffect(() => {
const cameraModifiedListener = () => setCameraModifiedTime(Date.now());
const cameraModifiedListener = (evt: Types.EventTypes.CameraModifiedEvent) => {
const { previousCamera, camera } = evt.detail;
const { rotation } = camera;
if (rotation !== undefined) {
setRotation(rotation);
}
if (
camera.flipHorizontal !== undefined &&
previousCamera.flipHorizontal !== camera.flipHorizontal
) {
setFlipHorizontal(camera.flipHorizontal);
}
if (
camera.flipVertical !== undefined &&
previousCamera.flipVertical !== camera.flipVertical
) {
setFlipVertical(camera.flipVertical);
}
};
element.addEventListener(Enums.Events.CAMERA_MODIFIED, cameraModifiedListener);
return () => {
element.removeEventListener(Enums.Events.CAMERA_MODIFIED, cameraModifiedListener);
};
}, [element]);
}, []);
const markers = useMemo(() => {
if (!viewportData || cameraModifiedTime === 0) {
return '';
}
if (!element || !getEnabledElement(element)) {
console.log(`ViewportOrientationMarkers :: Viewport element not enabled (${viewportId})`);
return '';
}
const ohifViewport = cornerstoneViewportService.getViewportInfo(viewportId);
if (!ohifViewport) {
console.log(`ViewportOrientationMarkers :: No viewport (${viewportId})`);
if (!viewportData) {
return '';
}
let rowCosines, columnCosines, isDefaultValueSetForRowCosine, isDefaultValueSetForColumnCosine;
if (viewportData.viewportType === 'stack') {
const imageIndex = imageSliceData.imageIndex;
const imageId = viewportData.data[0].imageIds?.[imageIndex];
@@ -55,33 +68,58 @@ function ViewportOrientationMarkers({
return false;
}
const { isDefaultValueSetForRowCosine, isDefaultValueSetForColumnCosine } =
metaData.get('imagePlaneModule', imageId) || {};
if (isDefaultValueSetForColumnCosine || isDefaultValueSetForRowCosine) {
({
rowCosines,
columnCosines,
isDefaultValueSetForColumnCosine,
isDefaultValueSetForColumnCosine,
} = metaData.get('imagePlaneModule', imageId) || {});
} else {
if (!element || !getEnabledElement(element)) {
return '';
}
const { viewport } = getEnabledElement(element);
const { viewUp, viewPlaneNormal } = viewport.getCamera();
const viewRight = vec3.create();
vec3.cross(viewRight, viewUp, viewPlaneNormal);
columnCosines = [-viewUp[0], -viewUp[1], -viewUp[2]];
rowCosines = viewRight;
}
const { viewport } = getEnabledElement(element);
const p00 = viewport.canvasToWorld([0, 0]);
const p10 = viewport.canvasToWorld([1, 0]);
const p01 = viewport.canvasToWorld([0, 1]);
const rowCosines = vec3.sub(vec3.create(), p10, p00);
const columnCosines = vec3.sub(vec3.create(), p01, p00);
if (
!rowCosines ||
!columnCosines ||
rotation === undefined ||
isDefaultValueSetForRowCosine ||
isDefaultValueSetForColumnCosine
) {
return '';
}
vec3.normalize(rowCosines, rowCosines);
vec3.normalize(columnCosines, columnCosines);
const markers = _getOrientationMarkers(
rowCosines,
columnCosines,
rotation,
flipVertical,
flipHorizontal
);
const markers = _getOrientationMarkers(rowCosines, columnCosines);
const ohifViewport = cornerstoneViewportService.getViewportInfo(viewportId);
if (!ohifViewport) {
console.log('ViewportOrientationMarkers::No viewport');
return null;
}
return orientationMarkers.map((m, index) => (
<div
className={classNames(
'overlay-text',
`${m}-mid orientation-marker`,
isLight ? 'text-neutral-dark/70' : 'text-neutral-light/70',
isLight ? 'shadow-light' : 'shadow-dark',
'text-highlight/65',
'text-base',
'leading-5'
)}
@@ -90,7 +128,15 @@ function ViewportOrientationMarkers({
<div className="orientation-marker-value">{markers[m]}</div>
</div>
));
}, [viewportData, imageSliceData, cameraModifiedTime, orientationMarkers, element, isLight]);
}, [
viewportData,
imageSliceData,
rotation,
flipVertical,
flipHorizontal,
orientationMarkers,
element,
]);
return <div className="ViewportOrientationMarkers select-none">{markers}</div>;
}
@@ -102,8 +148,10 @@ function ViewportOrientationMarkers({
*
* @param {*} rowCosines
* @param {*} columnCosines
* @param {*} rotation in degrees
* @returns
*/
function _getOrientationMarkers(rowCosines, columnCosines) {
function _getOrientationMarkers(rowCosines, columnCosines, rotation, flipVertical, flipHorizontal) {
const rowString = getOrientationStringLPS(rowCosines);
const columnString = getOrientationStringLPS(columnCosines);
const oppositeRowString = invertOrientationStringLPS(rowString);
@@ -116,6 +164,43 @@ function _getOrientationMarkers(rowCosines, columnCosines) {
bottom: columnString,
};
// If any vertical or horizontal flips are applied, change the orientation strings ahead of
// the rotation applications
if (flipVertical) {
markers.top = invertOrientationStringLPS(markers.top);
markers.bottom = invertOrientationStringLPS(markers.bottom);
}
if (flipHorizontal) {
markers.left = invertOrientationStringLPS(markers.left);
markers.right = invertOrientationStringLPS(markers.right);
}
// Swap the labels accordingly if the viewport has been rotated
// This could be done in a more complex way for intermediate rotation values (e.g. 45 degrees)
if (rotation === 90 || rotation === -270) {
return {
top: markers.left,
left: invertOrientationStringLPS(markers.top),
right: invertOrientationStringLPS(markers.bottom),
bottom: markers.right, // left
};
} else if (rotation === -90 || rotation === 270) {
return {
top: invertOrientationStringLPS(markers.left),
left: markers.top,
bottom: markers.left,
right: markers.bottom,
};
} else if (rotation === 180 || rotation === -180) {
return {
top: invertOrientationStringLPS(markers.top),
left: invertOrientationStringLPS(markers.left),
bottom: invertOrientationStringLPS(markers.bottom),
right: invertOrientationStringLPS(markers.right),
};
}
return markers;
}
+78 -539
View File
@@ -3,10 +3,8 @@ import {
StackViewport,
VolumeViewport,
utilities as csUtils,
Enums as CoreEnums,
Types as CoreTypes,
BaseVolumeViewport,
getRenderingEngines,
} from '@cornerstonejs/core';
import {
ToolGroupManager,
@@ -30,7 +28,6 @@ import {
import { vec3, mat4 } from 'gl-matrix';
import toggleImageSliceSync from './utils/imageSliceSync/toggleImageSliceSync';
import { getFirstAnnotationSelected } from './utils/measurementServiceMappings/utils/selection';
import { getViewportEnabledElement } from './utils/getViewportEnabledElement';
import getActiveViewportEnabledElement from './utils/getActiveViewportEnabledElement';
import toggleVOISliceSync from './utils/toggleVOISliceSync';
import { usePositionPresentationStore, useSegmentationPresentationStore } from './stores';
@@ -39,7 +36,6 @@ import CornerstoneViewportDownloadForm from './utils/CornerstoneViewportDownload
import { updateSegmentBidirectionalStats } from './utils/updateSegmentationStats';
import { generateSegmentationCSVReport } from './utils/generateSegmentationCSVReport';
import { getUpdatedViewportsForSegmentation } from './utils/hydrationUtils';
import { SegmentationRepresentations } from '@cornerstonejs/tools/enums';
const { DefaultHistoryMemo } = csUtils.HistoryMemo;
const toggleSyncFunctions = {
@@ -58,10 +54,7 @@ const getLabelmapTools = ({ toolGroupService }) => {
// tools is an object with toolName as the key and tool as the value
Object.keys(tools).forEach(toolName => {
const tool = tools[toolName];
if (
tool instanceof cornerstoneTools.LabelmapBaseTool &&
tool.shouldResolvePreviewRequests()
) {
if (tool instanceof cornerstoneTools.LabelmapBaseTool) {
labelmapTools.push(tool);
}
});
@@ -69,14 +62,6 @@ const getLabelmapTools = ({ toolGroupService }) => {
return labelmapTools;
};
const getPreviewTools = ({ toolGroupService }) => {
const labelmapTools = getLabelmapTools({ toolGroupService });
const previewTools = labelmapTools.filter(tool => tool.acceptPreview || tool.rejectPreview);
return previewTools;
};
const segmentAI = new ONNXSegmentationController({
autoSegmentMode: true,
models: {
@@ -102,7 +87,6 @@ let segmentAIEnabled = false;
function commandsModule({
servicesManager,
commandsManager,
extensionManager,
}: OhifTypes.Extensions.ExtensionParams): OhifTypes.Extensions.CommandsModule {
const {
viewportGridService,
@@ -124,10 +108,6 @@ function commandsModule({
return getActiveViewportEnabledElement(viewportGridService);
}
function _getViewportEnabledElement(viewportId: string) {
return getViewportEnabledElement(viewportId);
}
function _getActiveViewportToolGroupId() {
const viewport = _getActiveViewportEnabledElement();
return toolGroupService.getToolGroupForViewport(viewport.id);
@@ -146,132 +126,6 @@ function commandsModule({
}
const actions = {
jumpToMeasurementViewport: ({ annotationUID, measurement }) => {
cornerstoneTools.annotation.selection.setAnnotationSelected(annotationUID, true);
const { metadata } = measurement;
const activeViewportId = viewportGridService.getActiveViewportId();
// Finds the best viewport to jump to for showing the annotation view reference
// This may be different from active if there is a viewport already showing the display set.
const viewportId = cornerstoneViewportService.findNavigationCompatibleViewportId(
activeViewportId,
metadata
);
if (viewportId) {
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
viewport.setViewReference(metadata);
viewport.render();
return;
}
const { displaySetInstanceUID: referencedDisplaySetInstanceUID } = measurement;
if (!referencedDisplaySetInstanceUID) {
console.warn('ViewportGrid::No display set found in', measurement);
return;
}
// Finds the viewport to update to show the given displayset/orientation.
// This will choose a view already containing the measurement display set
// if possible, otherwise will fallback to the active.
const viewportToUpdate = cornerstoneViewportService.findUpdateableViewportConfiguration(
activeViewportId,
measurement
);
if (!viewportToUpdate) {
console.warn('Unable to find a viewport to show this in');
return;
}
const updatedViewports = hangingProtocolService.getViewportsRequireUpdate(
viewportToUpdate.viewportId,
referencedDisplaySetInstanceUID
);
if (!updatedViewports?.[0]) {
console.warn(
'ViewportGrid::Unable to navigate to viewport containing',
referencedDisplaySetInstanceUID
);
return;
}
updatedViewports[0].viewportOptions = viewportToUpdate.viewportOptions;
// Update stored position presentation
commandsManager.run('updateStoredPositionPresentation', {
viewportId: viewportToUpdate.viewportId,
displaySetInstanceUIDs: [referencedDisplaySetInstanceUID],
referencedImageId: measurement.referencedImageId,
options: {
...measurement.metadata,
},
});
commandsManager.run('setDisplaySetsForViewports', { viewportsToUpdate: updatedViewports });
},
hydrateSecondaryDisplaySet: async ({ displaySet, viewportId }) => {
if (!displaySet) {
return;
}
if (displaySet.isOverlayDisplaySet) {
// update the previously stored segmentationPresentation with the new viewportId
// presentation so that when we put the referencedDisplaySet back in the viewport
// it will have the correct segmentation representation hydrated
commandsManager.runCommand('updateStoredSegmentationPresentation', {
displaySet,
type:
displaySet.Modality === 'SEG'
? SegmentationRepresentations.Labelmap
: SegmentationRepresentations.Contour,
});
}
const referencedDisplaySetInstanceUID = displaySet.referencedDisplaySetInstanceUID;
const storePositionPresentation = refDisplaySet => {
// update the previously stored positionPresentation with the new viewportId
// presentation so that when we put the referencedDisplaySet back in the viewport
// it will be in the correct position zoom and pan
commandsManager.runCommand('updateStoredPositionPresentation', {
viewportId,
displaySetInstanceUIDs: [refDisplaySet.displaySetInstanceUID],
});
};
if (displaySet.Modality === 'SEG' || displaySet.Modality === 'RTSTRUCT') {
const referencedDisplaySet = displaySetService.getDisplaySetByUID(
referencedDisplaySetInstanceUID
);
storePositionPresentation(referencedDisplaySet);
return commandsManager.runCommand('loadSegmentationDisplaySetsForViewport', {
viewportId,
displaySetInstanceUIDs: [referencedDisplaySet.displaySetInstanceUID],
});
} else if (displaySet.Modality === 'SR') {
const results = commandsManager.runCommand('hydrateStructuredReport', {
displaySetInstanceUID: displaySet.displaySetInstanceUID,
});
const { SeriesInstanceUIDs } = results;
const referencedDisplaySets = displaySetService.getDisplaySetsForSeries(
SeriesInstanceUIDs[0]
);
referencedDisplaySets.forEach(storePositionPresentation);
if (referencedDisplaySets.length) {
actions.setDisplaySetsForViewports({
viewportsToUpdate: [
{
viewportId: viewportGridService.getActiveViewportId(),
displaySetInstanceUIDs: [referencedDisplaySets[0].displaySetInstanceUID],
},
],
});
}
return results;
}
},
runSegmentBidirectional: async ({ segmentationId, segmentIndex } = {}) => {
// Get active segmentation if not specified
const targetSegmentation =
@@ -392,11 +246,9 @@ function commandsModule({
type,
});
},
/** Stores the changed position presentation */
updateStoredPositionPresentation: ({
viewportId,
displaySetInstanceUIDs,
displaySetInstanceUID,
referencedImageId,
options,
}) => {
@@ -404,36 +256,22 @@ function commandsModule({
const { positionPresentationStore, setPositionPresentation, getPositionPresentationId } =
usePositionPresentationStore.getState();
// Look inside positionPresentationStore and find the key that includes ALL the displaySetInstanceUIDs
// Look inside positionPresentationStore and find the key that includes the displaySetInstanceUID
// and the value has viewportId as activeViewportId.
let previousReferencedDisplaySetStoreKey;
if (
displaySetInstanceUIDs &&
Array.isArray(displaySetInstanceUIDs) &&
displaySetInstanceUIDs.length > 0
) {
previousReferencedDisplaySetStoreKey = Object.entries(positionPresentationStore).find(
([key, value]) => {
return (
displaySetInstanceUIDs.every(uid => key.includes(uid)) &&
value?.viewportId === viewportId
);
}
)?.[0];
}
const previousReferencedDisplaySetStoreKey = Object.entries(positionPresentationStore).find(
([key, value]) => key.includes(displaySetInstanceUID) && value.viewportId === viewportId
)?.[0];
// Create presentation data with referencedImageId and options if provided
const presentationData =
referencedImageId || options?.FrameOfReferenceUID
? {
...presentations.positionPresentation,
viewReference: {
referencedImageId,
...options,
},
}
: presentations.positionPresentation;
const presentationData = referencedImageId
? {
...presentations.positionPresentation,
viewReference: {
referencedImageId,
...options,
},
}
: presentations.positionPresentation;
if (previousReferencedDisplaySetStoreKey) {
setPositionPresentation(previousReferencedDisplaySetStoreKey, presentationData);
@@ -444,7 +282,7 @@ function commandsModule({
// so we need to grab the positionPresentationId directly from the store,
// Todo: this is really hacky, we should have a better way for this
const positionPresentationId = getPositionPresentationId({
displaySetInstanceUIDs,
displaySetInstanceUIDs: [displaySetInstanceUID],
viewportId,
});
@@ -516,7 +354,7 @@ function commandsModule({
});
if (val !== undefined && val !== null) {
measurementService.update(uid, { ...measurement, label: val }, true);
measurementService.update(uid, { ...val }, true);
}
},
/**
@@ -705,22 +543,10 @@ function commandsModule({
viewportGridService.setActiveViewportId(viewportId);
},
arrowTextCallback: async ({ callback, data }) => {
arrowTextCallback: async ({ callback }) => {
const labelConfig = customizationService.getCustomization('measurementLabels');
const renderContent = customizationService.getCustomization('ui.labellingComponent');
if (!labelConfig) {
const label = await callInputDialog({
uiDialogService,
title: 'Edit Arrow Text',
placeholder: data?.data?.label || 'Enter new text',
defaultValue: data?.data?.label || '',
});
callback?.(label);
return;
}
const value = await callInputDialogAutoComplete({
uiDialogService,
labelConfig,
@@ -736,20 +562,10 @@ function commandsModule({
viewports.forEach((_, index) => cineService.setCine({ id: index, isPlaying: false }));
},
setViewportWindowLevel({
viewportId,
windowWidth,
windowCenter,
displaySetInstanceUID,
}: {
viewportId: string;
windowWidth: number;
windowCenter: number;
displaySetInstanceUID?: string;
}) {
setViewportWindowLevel({ viewportId, window, level }) {
// convert to numbers
const windowWidthNum = Number(windowWidth);
const windowCenterNum = Number(windowCenter);
const windowWidthNum = Number(window);
const windowCenterNum = Number(level);
// get actor from the viewport
const renderingEngine = cornerstoneViewportService.getRenderingEngine();
@@ -757,28 +573,12 @@ function commandsModule({
const { lower, upper } = csUtils.windowLevel.toLowHighRange(windowWidthNum, windowCenterNum);
if (viewport instanceof BaseVolumeViewport) {
const volumeId = actions.getVolumeIdForDisplaySet({
viewportId,
displaySetInstanceUID,
});
viewport.setProperties(
{
voiRange: {
upper,
lower,
},
},
volumeId
);
} else {
viewport.setProperties({
voiRange: {
upper,
lower,
},
});
}
viewport.setProperties({
voiRange: {
upper,
lower,
},
});
viewport.render();
},
toggleViewportColorbar: ({ viewportId, displaySetInstanceUIDs, options = {} }) => {
@@ -827,19 +627,10 @@ function commandsModule({
actions.setViewportWindowLevel({
viewportId: activeViewport,
windowWidth: windowLevelPreset.window,
windowCenter: windowLevelPreset.level,
window: windowLevelPreset.window,
level: windowLevelPreset.level,
});
},
getVolumeIdForDisplaySet: ({ viewportId, displaySetInstanceUID }) => {
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
if (viewport instanceof BaseVolumeViewport) {
const volumeIds = viewport.getAllVolumeIds();
const volumeId = volumeIds.find(id => id.includes(displaySetInstanceUID));
return volumeId;
}
return null;
},
setToolEnabled: ({ toolName, toggle, toolGroupId }) => {
const { viewports } = viewportGridService.getState();
@@ -928,7 +719,7 @@ function commandsModule({
return;
}
if (!toolGroup?.hasTool(toolName)) {
if (!toolGroup.hasTool(toolName)) {
return;
}
@@ -978,28 +769,32 @@ function commandsModule({
});
}
},
/**
* Rotates the viewport by `rotation` relative to its current rotation.
*/
rotateViewportBy: ({ rotation, viewportId }: { rotation: number; viewportId?: string }) => {
actions._rotateViewport({ rotation, viewportId, rotationMode: 'apply' });
rotateViewport: ({ rotation }) => {
const enabledElement = _getActiveViewportEnabledElement();
if (!enabledElement) {
return;
}
const { viewport } = enabledElement;
if (viewport instanceof BaseVolumeViewport) {
const camera = viewport.getCamera();
const rotAngle = (rotation * Math.PI) / 180;
const rotMat = mat4.identity(new Float32Array(16));
mat4.rotate(rotMat, rotMat, rotAngle, camera.viewPlaneNormal);
const rotatedViewUp = vec3.transformMat4(vec3.create(), camera.viewUp, rotMat);
viewport.setCamera({ viewUp: rotatedViewUp as CoreTypes.Point3 });
viewport.render();
} else if (viewport.getRotation !== undefined) {
const presentation = viewport.getViewPresentation();
const { rotation: currentRotation } = presentation;
const newRotation = (currentRotation + rotation + 360) % 360;
viewport.setViewPresentation({ rotation: newRotation });
viewport.render();
}
},
/**
* Sets the viewport rotation to an absolute value `rotation`.
*/
setViewportRotation: ({ rotation, viewportId }: { rotation: number; viewportId?: string }) => {
actions._rotateViewport({ rotation, viewportId, rotationMode: 'set' });
},
flipViewportHorizontal: ({
viewportId,
newValue = 'toggle',
}: {
viewportId?: string;
newValue?: 'toggle' | boolean;
}) => {
const enabledElement = viewportId
? _getViewportEnabledElement(viewportId)
: _getActiveViewportEnabledElement();
flipViewportHorizontal: () => {
const enabledElement = _getActiveViewportEnabledElement();
if (!enabledElement) {
return;
@@ -1007,27 +802,12 @@ function commandsModule({
const { viewport } = enabledElement;
let flipHorizontal: boolean;
if (newValue === 'toggle') {
const { flipHorizontal: currentHorizontalFlip } = viewport.getCamera();
flipHorizontal = !currentHorizontalFlip;
} else {
flipHorizontal = newValue;
}
viewport.setCamera({ flipHorizontal });
const { flipHorizontal } = viewport.getCamera();
viewport.setCamera({ flipHorizontal: !flipHorizontal });
viewport.render();
},
flipViewportVertical: ({
viewportId,
newValue = 'toggle',
}: {
viewportId?: string;
newValue?: 'toggle' | boolean;
}) => {
const enabledElement = viewportId
? _getViewportEnabledElement(viewportId)
: _getActiveViewportEnabledElement();
flipViewportVertical: () => {
const enabledElement = _getActiveViewportEnabledElement();
if (!enabledElement) {
return;
@@ -1035,14 +815,8 @@ function commandsModule({
const { viewport } = enabledElement;
let flipVertical: boolean;
if (newValue === 'toggle') {
const { flipVertical: currentVerticalFlip } = viewport.getCamera();
flipVertical = !currentVerticalFlip;
} else {
flipVertical = newValue;
}
viewport.setCamera({ flipVertical });
const { flipVertical } = viewport.getCamera();
viewport.setCamera({ flipVertical: !flipVertical });
viewport.render();
},
invertViewport: ({ element }) => {
@@ -1245,7 +1019,7 @@ function commandsModule({
const toolGroup = toolGroupService.getToolGroupForViewport(viewportId);
if (!toolGroup?.hasTool(toolName)) {
if (!toolGroup.hasTool(toolName)) {
return;
}
@@ -1415,9 +1189,6 @@ function commandsModule({
},
/**
* Creates a labelmap for the active viewport
*
* The created labelmap will be registered as a display set and also added
* as a segmentation representation to the viewport.
*/
createLabelmapForViewport: async ({ viewportId, options = {} }) => {
const { viewportGridService, displaySetService, segmentationService } =
@@ -1438,7 +1209,6 @@ function commandsModule({
const displaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
// This will create the segmentation and register it as a display set
const generatedSegmentationId = await segmentationService.createLabelmapForDisplaySet(
displaySet,
{
@@ -1455,7 +1225,6 @@ function commandsModule({
}
);
// Also add the segmentation representation to the viewport
await segmentationService.addSegmentationRepresentation(viewportId, {
segmentationId,
type: Enums.SegmentationRepresentations.Labelmap,
@@ -1811,62 +1580,6 @@ function commandsModule({
}
});
},
toggleSegmentLabel: () => {
const toolName = cornerstoneTools.SegmentLabelTool.toolName;
const toolGroupIds = toolGroupService.getToolGroupIds();
const isOn = toolGroupIds.some(toolGroupId => {
const toolGroup = cornerstoneTools.ToolGroupManager.getToolGroup(toolGroupId);
const mode = toolGroup.getToolInstance(toolName)?.mode;
return mode === 'Active';
});
toolGroupIds.forEach(toolGroupId => {
const toolGroup = cornerstoneTools.ToolGroupManager.getToolGroup(toolGroupId);
if (isOn) {
toolGroup.setToolDisabled(toolName);
} else {
toolGroup.setToolActive(toolName);
}
});
},
/**
* Used to sync the apps initial state with the config file settings.
*
* Will mutate the tools object of the given tool group and add the segmentLabelTool to the proper place.
*
* Use it before initializing the toolGroup with the tools.
*/
initializeSegmentLabelTool: ({ tools }) => {
const appConfig = extensionManager.appConfig;
const segmentLabelConfig = appConfig.segmentation?.segmentLabel;
if (segmentLabelConfig?.enabledByDefault) {
const activeTools = tools?.active ?? [];
activeTools.push({
toolName: toolNames.SegmentLabel,
configuration: {
hoverTimeout: segmentLabelConfig?.hoverTimeout ?? 1,
color: segmentLabelConfig?.labelColor,
background: segmentLabelConfig?.background,
},
});
tools.active = activeTools;
return tools;
}
const disabledTools = tools?.disabled ?? [];
disabledTools.push({
toolName: toolNames.SegmentLabel,
configuration: {
hoverTimeout: segmentLabelConfig?.hoverTimeout ?? 1,
color: segmentLabelConfig?.labelColor,
},
});
tools.disabled = disabledTools;
return tools;
},
toggleUseCenterSegmentIndex: ({ toggle }) => {
let labelmapTools = getLabelmapTools({ toolGroupService });
labelmapTools = labelmapTools.filter(tool => !tool.toolName.includes('Eraser'));
@@ -1878,15 +1591,14 @@ function commandsModule({
});
},
_handlePreviewAction: action => {
const labelmapTools = getLabelmapTools({ toolGroupService });
const { viewport } = _getActiveViewportEnabledElement();
const previewTools = getPreviewTools({ toolGroupService });
const activeTools = labelmapTools.filter(
tool => tool.mode === 'Active' || tool.mode === 'Enabled'
);
previewTools.forEach(tool => {
try {
tool[`${action}Preview`]();
} catch (error) {
console.debug('Error accepting preview for tool', tool.toolName);
}
activeTools.forEach(tool => {
tool[`${action}Preview`]();
});
if (segmentAI.enabled) {
@@ -2013,9 +1725,6 @@ function commandsModule({
const { segmentationService } = servicesManager.services;
const { activeViewportId } = viewportGridService.getState();
const activeSegmentation = segmentationService.getActiveSegmentation(activeViewportId);
if (!activeSegmentation) {
return;
}
segmentationService.addSegment(activeSegmentation.segmentationId);
},
loadSegmentationDisplaySetsForViewport: ({ viewportId, displaySetInstanceUIDs }) => {
@@ -2025,162 +1734,11 @@ function commandsModule({
displaySetInstanceUIDs,
});
actions.setDisplaySetsForViewports({
viewportsToUpdate: updatedViewports.map(viewport => ({
updatedViewports.forEach(viewport => {
viewportGridService.setDisplaySetsForViewport({
viewportId: viewport.viewportId,
displaySetInstanceUIDs: viewport.displaySetInstanceUIDs,
})),
});
},
setViewportOrientation: ({ viewportId, orientation }) => {
const viewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
if (!viewport || viewport.type !== CoreEnums.ViewportType.ORTHOGRAPHIC) {
console.warn('Orientation can only be set on volume viewports');
return;
}
// Get display sets for this viewport to verify at least one is reconstructable
const displaySetUIDs = viewportGridService.getDisplaySetsUIDsForViewport(viewportId);
const displaySets = displaySetUIDs.map(uid => displaySetService.getDisplaySetByUID(uid));
if (!displaySets.some(ds => ds.isReconstructable)) {
console.warn('Cannot change orientation: No reconstructable display sets in viewport');
return;
}
viewport.setOrientation(orientation);
viewport.render();
// update the orientation in the viewport info
const viewportInfo = cornerstoneViewportService.getViewportInfo(viewportId);
viewportInfo.setOrientation(orientation);
},
/**
* Toggles the horizontal flip state of the viewport.
*/
toggleViewportHorizontalFlip: ({ viewportId }: { viewportId?: string } = {}) => {
actions.flipViewportHorizontal({ viewportId, newValue: 'toggle' });
},
/**
* Explicitly sets the horizontal flip state of the viewport.
*/
setViewportHorizontalFlip: ({
flipped,
viewportId,
}: {
flipped: boolean;
viewportId?: string;
}) => {
actions.flipViewportHorizontal({ viewportId, newValue: flipped });
},
/**
* Toggles the vertical flip state of the viewport.
*/
toggleViewportVerticalFlip: ({ viewportId }: { viewportId?: string } = {}) => {
actions.flipViewportVertical({ viewportId, newValue: 'toggle' });
},
/**
* Explicitly sets the vertical flip state of the viewport.
*/
setViewportVerticalFlip: ({
flipped,
viewportId,
}: {
flipped: boolean;
viewportId?: string;
}) => {
actions.flipViewportVertical({ viewportId, newValue: flipped });
},
/**
* Internal helper to rotate or set absolute rotation for a viewport.
*/
_rotateViewport: ({
rotation,
viewportId,
rotationMode = 'apply',
}: {
rotation: number;
viewportId?: string;
rotationMode?: 'apply' | 'set';
}) => {
const enabledElement = viewportId
? _getViewportEnabledElement(viewportId)
: _getActiveViewportEnabledElement();
if (!enabledElement) {
return;
}
const { viewport } = enabledElement;
if (viewport instanceof BaseVolumeViewport) {
const camera = viewport.getCamera();
const rotAngle = (rotation * Math.PI) / 180;
const rotMat = mat4.identity(new Float32Array(16));
mat4.rotate(rotMat, rotMat, rotAngle, camera.viewPlaneNormal);
const rotatedViewUp = vec3.transformMat4(vec3.create(), camera.viewUp, rotMat);
viewport.setCamera({ viewUp: rotatedViewUp as CoreTypes.Point3 });
viewport.render();
return;
}
if (viewport.getRotation !== undefined) {
const { rotation: currentRotation } = viewport.getViewPresentation();
const newRotation =
rotationMode === 'apply'
? (currentRotation + rotation + 360) % 360
: (() => {
// In 'set' mode, account for the effect horizontal/vertical flips
// have on the perceived rotation direction. A single flip mirrors
// the image and inverses rotation direction, while two flips
// restore the original parity. We therefore invert the rotation
// angle when an odd number of flips are applied so that the
// requested absolute rotation matches the user expectation.
const { flipHorizontal = false, flipVertical = false } =
viewport.getViewPresentation();
const flipsParity = (flipHorizontal ? 1 : 0) + (flipVertical ? 1 : 0);
const effectiveRotation = flipsParity % 2 === 1 ? -rotation : rotation;
return (effectiveRotation + 360) % 360;
})();
viewport.setViewPresentation({ rotation: newRotation });
viewport.render();
}
},
startRecordingForAnnotationGroup: () => {
cornerstoneTools.AnnotationTool.startGroupRecording();
},
endRecordingForAnnotationGroup: () => {
cornerstoneTools.AnnotationTool.endGroupRecording();
},
triggerCreateAnnotationMemo: ({
annotation,
FrameOfReferenceUID,
options,
}: {
annotation: ToolTypes.Annotation;
FrameOfReferenceUID: string;
options: { newAnnotation?: boolean; deleting?: boolean };
}): void => {
const { newAnnotation, deleting } = options;
const renderingEngines = getRenderingEngines();
const viewports = renderingEngines.flatMap(re => re.getViewports());
const validViewport = viewports.find(
vp => vp.getFrameOfReferenceUID() === FrameOfReferenceUID
);
if (!validViewport) {
return;
}
cornerstoneTools.AnnotationTool.createAnnotationMemo(validViewport.element, annotation, {
newAnnotation,
deleting,
});
});
},
};
@@ -2220,7 +1778,9 @@ function commandsModule({
updateMeasurement: {
commandFn: actions.updateMeasurement,
},
jumpToMeasurement: actions.jumpToMeasurement,
jumpToMeasurement: {
commandFn: actions.jumpToMeasurement,
},
removeMeasurement: {
commandFn: actions.removeMeasurement,
},
@@ -2252,17 +1812,13 @@ function commandsModule({
commandFn: actions.setToolEnabled,
},
rotateViewportCW: {
commandFn: actions.rotateViewportBy,
commandFn: actions.rotateViewport,
options: { rotation: 90 },
},
rotateViewportCCW: {
commandFn: actions.rotateViewportBy,
commandFn: actions.rotateViewport,
options: { rotation: -90 },
},
rotateViewportCWSet: {
commandFn: actions.setViewportRotation,
options: { rotation: 90 },
},
incrementActiveViewport: {
commandFn: actions.changeActiveViewport,
},
@@ -2271,18 +1827,10 @@ function commandsModule({
options: { direction: -1 },
},
flipViewportHorizontal: {
commandFn: actions.toggleViewportHorizontalFlip,
commandFn: actions.flipViewportHorizontal,
},
flipViewportVertical: {
commandFn: actions.toggleViewportVerticalFlip,
},
setViewportHorizontalFlip: {
commandFn: actions.setViewportHorizontalFlip,
options: { flipped: true },
},
setViewportVerticalFlip: {
commandFn: actions.setViewportVerticalFlip,
options: { flipped: true },
commandFn: actions.flipViewportVertical,
},
invertViewport: {
commandFn: actions.invertViewport,
@@ -2473,15 +2021,6 @@ function commandsModule({
decreaseBrushSize: actions.decreaseBrushSize,
addNewSegment: actions.addNewSegment,
loadSegmentationDisplaySetsForViewport: actions.loadSegmentationDisplaySetsForViewport,
setViewportOrientation: actions.setViewportOrientation,
hydrateSecondaryDisplaySet: actions.hydrateSecondaryDisplaySet,
getVolumeIdForDisplaySet: actions.getVolumeIdForDisplaySet,
triggerCreateAnnotationMemo: actions.triggerCreateAnnotationMemo,
startRecordingForAnnotationGroup: actions.startRecordingForAnnotationGroup,
endRecordingForAnnotationGroup: actions.endRecordingForAnnotationGroup,
toggleSegmentLabel: actions.toggleSegmentLabel,
jumpToMeasurementViewport: actions.jumpToMeasurementViewport,
initializeSegmentLabelTool: actions.initializeSegmentLabelTool,
};
return {
@@ -1,149 +0,0 @@
import { useToolbar, useViewportMousePosition } from '@ohif/core/src/hooks';
import React, { useState, useEffect, useRef, useCallback } from 'react';
import { useViewportRendering } from '../../hooks';
import { ButtonLocation } from '@ohif/core/src/services/ToolBarService/ToolbarService';
import classNames from 'classnames';
const mouseNearControlsRanges = {
[ButtonLocation.TopMiddle]: { minX: 0, minY: 0, maxX: 1, maxY: 0.1 },
[ButtonLocation.BottomMiddle]: { minX: 0, minY: 0.9, maxX: 1, maxY: 1 },
[ButtonLocation.LeftMiddle]: { minX: 0, minY: 0, maxX: 0.1, maxY: 1 },
[ButtonLocation.RightMiddle]: { minX: 0.9, minY: 0, maxX: 1, maxY: 1 },
};
const getFlexDirectionClassName = (location: ButtonLocation) =>
location === ButtonLocation.LeftMiddle || location === ButtonLocation.RightMiddle
? 'flex-col'
: 'flex-row';
function AdvancedRenderingControls({
viewportId,
location,
buttonSection,
}: {
viewportId: string;
location: number;
buttonSection: string;
}) {
const {
onInteraction,
toolbarButtons,
isItemOpen,
isItemLocked,
openItem,
closeItem,
toggleLock,
} = useToolbar({
buttonSection,
});
const mousePosition = useViewportMousePosition(viewportId);
const [isMouseNearControls, setIsMouseNearControls] = useState(false);
const [showAllIcons, setShowAllIcons] = useState(true);
const firstMountRef = useRef(true);
const { hasColorbar } = useViewportRendering(viewportId);
const [isAnItemOpen, setIsAnItemOpen] = useState(false);
useEffect(() => {
if (firstMountRef.current) {
firstMountRef.current = false;
const timer = setTimeout(() => {
setShowAllIcons(false);
}, 3000);
return () => clearTimeout(timer);
}
}, []);
useEffect(() => {
if (!showAllIcons && mousePosition.isInViewport) {
const mouseHoverLocation = mouseNearControlsRanges[location];
if (mousePosition.isWithinNormalizedBox(mouseHoverLocation)) {
setIsMouseNearControls(true);
} else {
setIsMouseNearControls(false);
}
}
}, [location, mousePosition, showAllIcons]);
const handleOnItemOpen = useCallback(
(id, viewportId) => {
openItem(id, viewportId);
setIsAnItemOpen(true);
},
[openItem, setIsAnItemOpen]
);
const handleOnItemClose = useCallback(
(id, viewportId) => {
closeItem(id, viewportId);
setIsAnItemOpen(false);
},
[closeItem, setIsAnItemOpen]
);
if (!toolbarButtons?.length) {
return null;
}
if (!hasColorbar) {
return null;
}
return (
<div className={classNames('flex gap-2', getFlexDirectionClassName(location))}>
{toolbarButtons.map(toolDef => {
if (!toolDef) {
return null;
}
const { id, Component, componentProps } = toolDef;
// Enhanced props with state and actions - respecting viewport specificity
const enhancedProps = {
...componentProps,
isOpen: isItemOpen(id, viewportId),
isLocked: isItemLocked(id, viewportId),
onOpen: () => handleOnItemOpen(id, viewportId),
onClose: () => handleOnItemClose(id, viewportId),
onToggleLock: () => toggleLock(id, viewportId),
viewportId,
};
const tool = (
<Component
key={id}
id={id}
location={location}
onInteraction={args => {
onInteraction({
...args,
itemId: id,
viewportId,
});
}}
{...enhancedProps}
/>
);
// Always show all icons on first mount for 3 seconds
// After that, always show Colorbar, show others only when mouse is at bottom
const shouldBeVisible =
isAnItemOpen || showAllIcons || id === 'Colorbar' || isMouseNearControls;
return (
<div
key={id}
className={shouldBeVisible ? 'opacity-100' : 'pointer-events-none opacity-0'}
style={{ transition: 'opacity 0.2s ease-in-out' }}
>
{tool}
</div>
);
})}
</div>
);
}
export default AdvancedRenderingControls;
@@ -1 +0,0 @@
export { default } from './AdvancedRenderingControls';
@@ -259,24 +259,22 @@ function DicomUploadProgress({
}, [getPercentCompleteRounded, percentComplete]);
/**
* Gets the CSS style for the 'n of m' (files completed) text.
* The width changes according to numFilesCompleted and can vary,
* e.g. "1 of 200", "10 of 200", "100 of 200" all have differents width.
* Gets the css style for the 'n of m' (files completed) text. The only css attribute
* of the style is width such that the 'n of m' is always a fixed width and thus
* as each file completes uploading the text on screen does not constantly shift
* left and right.
*/
const getNofMFilesStyle = useCallback(() => {
// the number of digits accounts for the digits being on each side of the ' of '
const numDigits =
numFilesCompleted.toString().length + dicomFileUploaderArr.length.toString().length;
// The number of digits + 3 additional characters (accounts for ' of ').
// Even though intuitively 4 should be better, this is the most accurate width.
// The font may play a part in this discrepancy.
const numChars = numDigits + 3;
const numDigits = 2 * dicomFileUploaderArr.length.toString().length;
// the number of digits + 2 spaces and 2 characters for ' of '
const numChars = numDigits + 4;
return { width: `${numChars}ch` };
}, [numFilesCompleted]);
}, []);
const getNumCompletedAndTimeRemainingComponent = (): ReactElement => {
return (
<div className="bg-primary-dark flex h-14 items-center px-1 pb-4 text-lg text-white">
<div className="bg-primary-dark flex h-14 items-center px-1 pb-4 text-lg">
{numFilesCompleted === dicomFileUploaderArr.length ? (
<>
<span className={NO_WRAP_ELLIPSIS_CLASS_NAMES}>{`${dicomFileUploaderArr.length} ${
@@ -292,24 +290,21 @@ function DicomUploadProgress({
</>
) : (
<>
<div className="flex flex-wrap">
<span
style={getNofMFilesStyle()}
className={classNames(NO_WRAP_ELLIPSIS_CLASS_NAMES, 'text-right')}
>
{`${numFilesCompleted} of ${dicomFileUploaderArr.length}`}&nbsp;
</span>
<span className={NO_WRAP_ELLIPSIS_CLASS_NAMES}>{' files completed.'}</span>
<br />
<span>
{timeRemaining ? `Less than ${getFormattedTimeRemaining()} remaining. ` : ''}
</span>
</div>
<span
className={
'text-primary hover:text-primary-lightactive:text-aqua-pale ml-auto cursor-pointer whitespace-nowrap'
}
style={getNofMFilesStyle()}
className={classNames(NO_WRAP_ELLIPSIS_CLASS_NAMES, 'text-end')}
>
{`${numFilesCompleted} of ${dicomFileUploaderArr.length}`}&nbsp;
</span>
<span className={NO_WRAP_ELLIPSIS_CLASS_NAMES}>{' files completed.'}&nbsp;</span>
<span className={NO_WRAP_ELLIPSIS_CLASS_NAMES}>
{timeRemaining ? `Less than ${getFormattedTimeRemaining()} remaining. ` : ''}
</span>
<span
className={classNames(
NO_WRAP_ELLIPSIS_CLASS_NAMES,
'text-primary hover:text-primary-light active:text-aqua-pale ml-auto cursor-pointer'
)}
onClick={cancelAllUploads}
>
Cancel All Uploads
@@ -359,7 +354,7 @@ function DicomUploadProgress({
></ProgressLoadingBar>
</div>
<div className="ml-1 flex w-24 items-center">
<div className="w-10 text-right text-foreground">{`${getPercentCompleteRounded()}%`}</div>
<div className="w-10 text-right">{`${getPercentCompleteRounded()}%`}</div>
{getShowFailedOnlyIconComponent()}
</div>
</>
@@ -75,7 +75,7 @@ const DicomUploadProgressItem = memo(
<div className="self-top flex w-0 shrink grow flex-col gap-1">
<div className="flex gap-4">
<div className="flex w-6 shrink-0 items-center justify-center">{getStatusIcon()}</div>
<div className="overflow-hidden text-ellipsis whitespace-nowrap text-white">
<div className="overflow-hidden text-ellipsis whitespace-nowrap">
{dicomFileUploader.getFileName()}
</div>
</div>
@@ -1,171 +0,0 @@
import React, { useMemo, useState, useEffect } from 'react';
import { useTranslation } from 'react-i18next';
import { ViewportActionButton } from '@ohif/ui-next';
import { Icons, Tooltip, TooltipTrigger, TooltipContent } from '@ohif/ui-next';
import { useSystem } from '@ohif/core/src';
import { useViewportDisplaySets } from '../../hooks/useViewportDisplaySets';
import { useMeasurementTracking } from '../../hooks/useMeasurementTracking';
/**
* ModalityLoadBadge displays the status and actionable buttons for viewports containing
* special displaySets (SR, SEG, RTSTRUCT) or when tracking measurements
*/
function ModalityLoadBadge({ viewportId }: { viewportId: string }) {
const { commandsManager } = useSystem();
const { t } = useTranslation('Common');
const loadStr = t('LOAD');
const { isTracked, isLocked } = useMeasurementTracking({ viewportId });
const { backgroundDisplaySet } = useViewportDisplaySets(viewportId);
const [specialDisplaySet, setSpecialDisplaySet] = useState(null);
const allDisplaySets = useMemo(() => {
return [backgroundDisplaySet].filter(Boolean);
}, [backgroundDisplaySet]);
useEffect(() => {
const displaySet = allDisplaySets.find(ds => ds.isOverlayDisplaySet || ds?.Modality === 'SR');
setSpecialDisplaySet(displaySet || null);
}, [allDisplaySets]);
const statusInfo = useMemo(() => {
if (isTracked && !specialDisplaySet) {
return {
type: 'SR',
isHydrated: true,
isTracked,
displaySet: null,
tooltip: 'Currently tracking measurements in this viewport',
};
}
if (!specialDisplaySet) {
return {
type: null,
};
}
const type = specialDisplaySet.Modality;
const isHydrated = specialDisplaySet.isHydrated || false;
let tooltip = null;
const isRehydratable = specialDisplaySet.isRehydratable || false;
if (type === 'SEG') {
tooltip = isHydrated
? 'This Segmentation is loaded in the segmentation panel'
: 'Click LOAD to load segmentation.';
} else if (type === 'RTSTRUCT') {
tooltip = isHydrated
? 'This RTSTRUCT is loaded in the segmentation panel'
: 'Click LOAD to load RTSTRUCT.';
} else if (type === 'SR') {
if (!isRehydratable) {
tooltip = 'This structured report is not compatible with this application.';
} else if (isRehydratable && isLocked) {
tooltip =
'This structured report is currently read-only because you are tracking measurements in another viewport.';
} else {
tooltip = `Click ${loadStr} to restore measurements.`;
}
}
return {
type,
isHydrated,
displaySet: specialDisplaySet,
isRehydratable,
tooltip,
};
}, [specialDisplaySet, loadStr, isLocked, isTracked]);
// Nothing to show if there's no special display set type or tracking
if (!statusInfo.type && !isTracked) {
return null;
}
const StatusIcon = () => {
if (statusInfo.type === 'SR') {
if (statusInfo.isRehydratable && !isLocked) {
return (
<Icons.ByName
className="text-muted-foreground h-4 w-4"
name="status-untracked"
/>
);
}
if (statusInfo.isRehydratable && isLocked) {
return (
<Icons.ByName
name="status-locked"
className="h-4 w-4"
/>
);
} else {
return (
<Icons.ByName
name="status-alert"
className="h-4 w-4"
/>
);
}
} else {
return <Icons.StatusUntracked className="h-4 w-4" />;
}
};
const StatusArea = () => {
if (!statusInfo.isHydrated) {
return (
<div
data-cy={`ModalityLoadBadge-${viewportId}`}
className="flex h-6 cursor-default text-sm leading-6 text-white"
>
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
<StatusIcon />
<span className="ml-1">{statusInfo.type}</span>
</div>
{/* We don't show the load button for SRs because we handle it in the SR extension
via the tracked measurement context that works with state machine, this is not a regression right now */}
{statusInfo.type !== 'SR' && (
<ViewportActionButton
onInteraction={() => {
commandsManager.runCommand('hydrateSecondaryDisplaySet', {
displaySet: statusInfo.displaySet,
viewportId,
});
}}
>
{loadStr}
</ViewportActionButton>
)}
</div>
);
}
return null;
};
return (
<>
{statusInfo.tooltip && (
<Tooltip>
<TooltipTrigger asChild>
<span>
<StatusArea />
</span>
</TooltipTrigger>
<TooltipContent side="bottom">
<div>{statusInfo.tooltip}</div>
</TooltipContent>
</Tooltip>
)}
{!statusInfo.tooltip && <StatusArea />}
</>
);
}
export default ModalityLoadBadge;
@@ -1 +0,0 @@
export { default } from './ModalityLoadBadge';
@@ -1,151 +0,0 @@
import React, { useCallback, useState } from 'react';
import { ViewportActionArrows } from '@ohif/ui-next';
import { useSystem } from '@ohif/core/src';
import { utils } from '../..';
import { useViewportSegmentations } from '../../hooks';
import { useMeasurementTracking } from '../../hooks/useMeasurementTracking';
import { useViewportDisplaySets } from '../../hooks/useViewportDisplaySets';
/**
* NavigationComponent provides navigation controls for viewports containing
* special displaySets (SR, SEG, RTSTRUCT) to navigate between segments or measurements
*/
function NavigationComponent({ viewportId }: { viewportId: string }) {
const { servicesManager } = useSystem();
const { segmentationService, cornerstoneViewportService, measurementService } =
servicesManager.services;
// Get tracking information
const { isTracked, trackedMeasurementUIDs } = useMeasurementTracking({ viewportId });
const { viewportDisplaySets } = useViewportDisplaySets(viewportId);
const [measurementSelected, setMeasurementSelected] = useState(0);
const isSRDisplaySet = viewportDisplaySets.some(displaySet => displaySet?.Modality === 'SR');
const cornerstoneViewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
// Get segmentation information
const { segmentationsWithRepresentations } = useViewportSegmentations({
viewportId,
});
const hasSegmentations = segmentationsWithRepresentations.length > 0;
// prefer segment navigation if available
const navigationMode = hasSegmentations
? 'segment'
: isSRDisplaySet
? 'measurement'
: isTracked
? 'measurement'
: null;
const handleMeasurementNavigation = useCallback(
(direction: number) => {
const measurementDisplaySet = viewportDisplaySets.find(
displaySet => displaySet?.Modality === 'SR'
);
if (measurementDisplaySet) {
const measurements = measurementDisplaySet.measurements;
if (measurements.length <= 0) {
return;
}
const newIndex = getNextIndex(measurementSelected, direction, measurements.length);
setMeasurementSelected(newIndex);
const measurement = measurements[newIndex];
cornerstoneViewport.setViewReference({
referencedImageId: measurement.imageId,
});
return;
}
if (isTracked && trackedMeasurementUIDs.length > 0) {
const newIndex = getNextIndex(
measurementSelected,
direction,
trackedMeasurementUIDs.length
);
setMeasurementSelected(newIndex);
measurementService.jumpToMeasurement(viewportId, trackedMeasurementUIDs[newIndex]);
}
},
[
viewportId,
cornerstoneViewport,
measurementSelected,
measurementService,
isTracked,
trackedMeasurementUIDs,
viewportDisplaySets,
]
);
const handleSegmentNavigation = useCallback(
(direction: number) => {
if (!segmentationsWithRepresentations.length) {
return;
}
const segmentationId = segmentationsWithRepresentations[0].segmentation.segmentationId;
utils.handleSegmentChange({
direction,
segmentationId,
viewportId,
selectedSegmentObjectIndex: 0,
segmentationService,
});
},
[segmentationsWithRepresentations, viewportId, segmentationService]
);
// Handle navigation between segments/measurements
const handleNavigate = useCallback(
(direction: number) => {
if (navigationMode === 'segment') {
handleSegmentNavigation(direction);
} else if (navigationMode === 'measurement') {
handleMeasurementNavigation(direction);
}
},
[navigationMode, handleSegmentNavigation, handleMeasurementNavigation]
);
// Only render if we have a navigation mode
if (!navigationMode) {
return null;
}
return (
<ViewportActionArrows
onArrowsClick={handleNavigate}
className="h-6"
/>
);
}
/**
* Calculate the next index with circular navigation support
* @param currentIndex Current index position
* @param direction Direction of movement (1 for next, -1 for previous)
* @param totalItems Total number of items to navigate through
* @returns The next index with wrap-around support
*/
function getNextIndex(currentIndex: number, direction: number, totalItems: number): number {
if (totalItems <= 0) {
return 0;
}
// Use modulo to handle circular navigation
let nextIndex = (currentIndex + direction) % totalItems;
// Handle negative index when going backwards from index 0
if (nextIndex < 0) {
nextIndex = totalItems - 1;
}
return nextIndex;
}
export default NavigationComponent;
@@ -1,3 +0,0 @@
import NavigationComponent from './NavigationComponent';
export default NavigationComponent;
@@ -1,94 +1,25 @@
import React, { memo } from 'react';
import { ViewportActionCorners, IconPresentationProvider, ToolButton } from '@ohif/ui-next';
import { Toolbar } from '@ohif/extension-default/src/Toolbar/Toolbar';
import { ButtonLocation } from '@ohif/core/src/services/ToolBarService/ToolbarService';
import { useViewportHover } from '../hooks';
import React from 'react';
import { useViewportActionCornersContext } from '../contextProviders/ViewportActionCornersProvider';
import { useSystem } from '@ohif/core';
export type OHIFViewportActionCornersProps = {
viewportId: string;
};
function OHIFViewportActionCornersComponent({ viewportId }: OHIFViewportActionCornersProps) {
// Use the viewport hover hook to track if viewport is hovered or active
const { isHovered, isActive } = useViewportHover(viewportId);
const shouldShowCorners = isHovered || isActive;
if (!shouldShowCorners) {
function OHIFViewportActionCorners({ viewportId }: OHIFViewportActionCornersProps) {
const { servicesManager } = useSystem();
const [viewportActionCornersState] = useViewportActionCornersContext();
const ViewportActionCorners =
servicesManager.services.customizationService.getCustomization('ui.viewportActionCorner');
if (!viewportActionCornersState[viewportId]) {
return null;
}
return (
<IconPresentationProvider
size="medium"
IconContainer={ToolButton}
containerProps={{
size: 'tiny',
className: 'font-normal text-primary hover:bg-primary/25',
}}
>
<ViewportActionCorners.Container>
<ViewportActionCorners.TopLeft>
<Toolbar
buttonSection="viewportActionMenu.topLeft"
viewportId={viewportId}
location={ButtonLocation.TopLeft}
/>
</ViewportActionCorners.TopLeft>
<ViewportActionCorners.TopMiddle>
<Toolbar
buttonSection="viewportActionMenu.topMiddle"
viewportId={viewportId}
location={ButtonLocation.TopMiddle}
/>
</ViewportActionCorners.TopMiddle>
<ViewportActionCorners.TopRight>
<Toolbar
buttonSection="viewportActionMenu.topRight"
viewportId={viewportId}
location={ButtonLocation.TopRight}
/>
</ViewportActionCorners.TopRight>
<ViewportActionCorners.LeftMiddle>
<Toolbar
buttonSection="viewportActionMenu.leftMiddle"
viewportId={viewportId}
location={ButtonLocation.LeftMiddle}
/>
</ViewportActionCorners.LeftMiddle>
<ViewportActionCorners.RightMiddle>
<Toolbar
buttonSection="viewportActionMenu.rightMiddle"
viewportId={viewportId}
location={ButtonLocation.RightMiddle}
/>
</ViewportActionCorners.RightMiddle>
<ViewportActionCorners.BottomLeft>
<Toolbar
buttonSection="viewportActionMenu.bottomLeft"
viewportId={viewportId}
location={ButtonLocation.BottomLeft}
/>
</ViewportActionCorners.BottomLeft>
<ViewportActionCorners.BottomMiddle>
<Toolbar
buttonSection="viewportActionMenu.bottomMiddle"
viewportId={viewportId}
location={ButtonLocation.BottomMiddle}
/>
</ViewportActionCorners.BottomMiddle>
<ViewportActionCorners.BottomRight>
<Toolbar
buttonSection="viewportActionMenu.bottomRight"
viewportId={viewportId}
location={ButtonLocation.BottomRight}
/>
</ViewportActionCorners.BottomRight>
</ViewportActionCorners.Container>
</IconPresentationProvider>
<ViewportActionCorners
cornerComponents={viewportActionCornersState[viewportId]}
></ViewportActionCorners>
);
}
const OHIFViewportActionCorners = memo(OHIFViewportActionCornersComponent);
export default OHIFViewportActionCorners;
@@ -1,54 +0,0 @@
import React from 'react';
import { Numeric } from '@ohif/ui-next';
import { useViewportDisplaySets, useViewportRendering } from '../../hooks';
interface OpacityMenuProps {
viewportId: string;
className?: string;
}
function OpacityMenu({ viewportId, className }: OpacityMenuProps) {
const { backgroundDisplaySet, foregroundDisplaySets } = useViewportDisplaySets(viewportId, {
includeForeground: true,
includeBackground: true,
});
const { opacityLinear, setOpacityLinear } = useViewportRendering(viewportId, {
displaySetInstanceUID: foregroundDisplaySets[0].displaySetInstanceUID,
});
const opacityValue = opacityLinear !== undefined ? opacityLinear : 0;
const backgroundModality = backgroundDisplaySet?.Modality || '';
const foregroundModality = foregroundDisplaySets[0]?.Modality || '';
return (
<div className={className}>
<div className="bg-popover w-72 rounded-lg p-3">
<div className="mb-2 flex items-center justify-center">
<span className="text-muted-foreground text-base">Opacity</span>
</div>
<div className="">
<Numeric.Container
mode="singleRange"
value={opacityValue}
onChange={(val: number | [number, number]) => {
if (typeof val === 'number') {
setOpacityLinear(val);
}
}}
min={0}
max={1}
step={0.0001}
>
<div className="flex items-center">
<span className="text-foreground mr-2 text-sm">{backgroundModality}</span>
<Numeric.SingleRange showNumberInput={false} />
<span className="text-foreground ml-2 text-sm">{foregroundModality}</span>
</div>
</Numeric.Container>
</div>
</div>
</div>
);
}
export default OpacityMenu;
@@ -1,85 +0,0 @@
import React, { ReactNode } from 'react';
import { useSystem } from '@ohif/core';
import {
Button,
Icons,
Popover,
PopoverContent,
PopoverTrigger,
useIconPresentation,
} from '@ohif/ui-next';
import OpacityMenu from './OpacityMenu';
type OpacityMenuWrapperProps = {
viewportId: string;
location: string;
isOpen?: boolean;
onOpen?: () => void;
onClose?: () => void;
disabled?: boolean;
};
export function OpacityMenuWrapper(props: OpacityMenuWrapperProps): ReactNode {
const { viewportId, location, isOpen = false, onOpen, onClose, disabled, ...rest } = props;
const { IconContainer, className: iconClassName, containerProps } = useIconPresentation();
const handleOpenChange = (openState: boolean) => {
if (openState) {
onOpen?.();
} else {
onClose?.();
}
};
const { servicesManager } = useSystem();
const { toolbarService } = servicesManager.services;
const { align, side } = toolbarService.getAlignAndSide(location);
const Icon = <Icons.Opacity className={iconClassName} />;
return (
<Popover
open={isOpen}
onOpenChange={handleOpenChange}
>
<PopoverTrigger
asChild
className="flex items-center justify-center"
>
<div>
{IconContainer ? (
<IconContainer
disabled={disabled}
icon="Opacity"
{...rest}
{...containerProps}
>
{Icon}
</IconContainer>
) : (
<Button
variant="ghost"
size="icon"
disabled={disabled}
>
{Icon}
</Button>
)}
</div>
</PopoverTrigger>
<PopoverContent
className="border-none bg-transparent p-0 shadow-none"
side={side}
align={align}
alignOffset={0}
sideOffset={5}
>
<OpacityMenu
className="w-full"
viewportId={viewportId}
/>
</PopoverContent>
</Popover>
);
}
@@ -1,2 +0,0 @@
export { OpacityMenuWrapper } from './OpacityMenuWrapper';
export { default as OpacityMenu } from './OpacityMenu';
@@ -1,26 +0,0 @@
import React from 'react';
// should be used in a Select component
const SelectItemWithModality = ({
displaySet,
showModality = true,
dataCY = `${displaySet.label}-${displaySet.Modality}`,
}: {
displaySet: AppTypes.DisplaySet;
showModality?: boolean;
dataCY?: string;
}): JSX.Element => (
<div
className="flex w-[90%] items-center justify-between"
data-cy={dataCY}
>
<span className="text-foreground truncate text-base">{displaySet.label}</span>
{showModality && displaySet.Modality && (
<span className="text-muted-foreground flex-shrink-0 whitespace-nowrap text-xs">
{displaySet.Modality}
</span>
)}
</div>
);
export default SelectItemWithModality;
@@ -24,38 +24,36 @@ export const groupByStudy = (items, grouping, childProps) => {
let firstSelected, firstGroup;
items
.filter(item => item.displaySetInstanceUID)
.forEach(item => {
const studyUID = getItemStudyInstanceUID(item);
if (!groups.has(studyUID)) {
const items = [];
const filter = MeasurementFilters.filterAnd(
MeasurementFilters.filterMeasurementsByStudyUID(studyUID),
grouping.filter
);
const group = {
...grouping,
items,
displayMeasurements: items,
key: studyUID,
isSelected: studyUID === activeStudyUID,
StudyInstanceUID: studyUID,
filter,
measurementFilter: filter,
};
if (group.isSelected && !firstSelected) {
firstSelected = group;
}
firstGroup ||= group;
groups.set(studyUID, group);
items.forEach(item => {
const studyUID = getItemStudyInstanceUID(item);
if (!groups.has(studyUID)) {
const items = [];
const filter = MeasurementFilters.filterAnd(
MeasurementFilters.filterMeasurementsByStudyUID(activeStudyUID),
grouping.filter
);
const group = {
...grouping,
items,
displayMeasurements: items,
key: studyUID,
isSelected: studyUID === activeStudyUID,
StudyInstanceUID: activeStudyUID,
filter,
measurementFilter: filter,
};
if (group.isSelected && !firstSelected) {
firstSelected = group;
}
if (!firstSelected && firstGroup) {
firstGroup.isSelected = true;
}
const group = groups.get(studyUID);
group.items.push(item);
});
firstGroup ||= group;
groups.set(studyUID, group);
}
if (!firstSelected && firstGroup) {
firstGroup.isSelected = true;
}
const group = groups.get(studyUID);
group.items.push(item);
});
return groups;
};
@@ -1,104 +0,0 @@
import React, { useState, useEffect } from 'react';
import {
Numeric,
Select,
SelectTrigger,
SelectValue,
SelectContent,
SelectItem,
Button,
} from '@ohif/ui-next';
import { useViewportRendering } from '../../hooks';
import { useViewportDisplaySets } from '../../hooks/useViewportDisplaySets';
import SelectItemWithModality from '../SelectItemWithModality';
interface ThresholdMenuProps {
viewportId: string;
className?: string;
}
function ThresholdMenu({ viewportId, className }: ThresholdMenuProps) {
const { viewportDisplaySets, foregroundDisplaySets } = useViewportDisplaySets(viewportId);
const [selectedDisplaySetUID, setSelectedDisplaySetUID] = useState<string | undefined>(
foregroundDisplaySets.length > 0 ? foregroundDisplaySets[0].displaySetInstanceUID : undefined
);
const { threshold, setThreshold, pixelValueRange } = useViewportRendering(viewportId, {
displaySetInstanceUID: selectedDisplaySetUID,
});
const { min, max } = pixelValueRange;
const thresholdValue = threshold ?? min;
useEffect(() => {
if (foregroundDisplaySets.length > 0 && !selectedDisplaySetUID) {
setSelectedDisplaySetUID(foregroundDisplaySets[0].displaySetInstanceUID);
}
}, [foregroundDisplaySets, selectedDisplaySetUID]);
const selectedDisplaySet = viewportDisplaySets.find(
ds => ds.displaySetInstanceUID === selectedDisplaySetUID
);
return (
<div className={className}>
<div className="bg-popover w-72 rounded-lg p-4 shadow-md">
<div className="mb-4 flex items-center justify-between">
<div className="flex items-center space-x-2">
<span className="text-muted-foreground text-base">Threshold</span>
{viewportDisplaySets.length > 1 && (
<div className="w-32">
<Select
value={selectedDisplaySetUID}
onValueChange={setSelectedDisplaySetUID}
>
<SelectTrigger>
<SelectValue>{selectedDisplaySet?.label || 'Select Display Set'}</SelectValue>
</SelectTrigger>
<SelectContent>
{viewportDisplaySets.map(ds => (
<SelectItem
key={ds.displaySetInstanceUID}
value={ds.displaySetInstanceUID}
>
<SelectItemWithModality displaySet={ds} />
</SelectItem>
))}
</SelectContent>
</Select>
</div>
)}
</div>
<Button
size="sm"
variant="ghost"
onClick={() => setThreshold(min)}
className="text-sm"
>
Reset
</Button>
</div>
<Numeric.Container
mode="singleRange"
value={thresholdValue}
onChange={(val: number | [number, number]) => {
if (typeof val === 'number') {
setThreshold(val);
}
}}
min={min}
max={max}
step={0.01}
>
<Numeric.SingleRange />
<div className="mt-1 flex justify-between">
<span className="text-muted-foreground text-sm">{min.toFixed(0)}</span>
<span className="text-muted-foreground text-sm">{max.toFixed(0)}</span>
</div>
</Numeric.Container>
</div>
</div>
);
}
export default ThresholdMenu;
@@ -1,85 +0,0 @@
import React, { ReactNode } from 'react';
import { useSystem } from '@ohif/core';
import {
Button,
Icons,
Popover,
PopoverContent,
PopoverTrigger,
useIconPresentation,
} from '@ohif/ui-next';
import ThresholdMenu from './ThresholdMenu';
type ThresholdMenuWrapperProps = {
viewportId: string;
location: string;
isOpen?: boolean;
onOpen?: () => void;
onClose?: () => void;
disabled?: boolean;
};
export function ThresholdMenuWrapper(props: ThresholdMenuWrapperProps): ReactNode {
const { viewportId, location, isOpen = false, onOpen, onClose, disabled, ...rest } = props;
const { IconContainer, className: iconClassName, containerProps } = useIconPresentation();
const handleOpenChange = (openState: boolean) => {
if (openState) {
onOpen?.();
} else {
onClose?.();
}
};
const { servicesManager } = useSystem();
const { toolbarService } = servicesManager.services;
const { align, side } = toolbarService.getAlignAndSide(location);
const Icon = <Icons.Threshold className={iconClassName} />;
return (
<Popover
open={isOpen}
onOpenChange={handleOpenChange}
>
<PopoverTrigger
asChild
className="flex items-center justify-center"
>
<div>
{IconContainer ? (
<IconContainer
disabled={disabled}
icon="Threshold"
{...rest}
{...containerProps}
>
{Icon}
</IconContainer>
) : (
<Button
variant="ghost"
size="icon"
disabled={disabled}
>
{Icon}
</Button>
)}
</div>
</PopoverTrigger>
<PopoverContent
className="border-none bg-transparent p-0 shadow-none"
side={side}
align={align}
alignOffset={0}
sideOffset={5}
>
<ThresholdMenu
className="w-full"
viewportId={viewportId}
/>
</PopoverContent>
</Popover>
);
}
@@ -1,2 +0,0 @@
export { ThresholdMenuWrapper } from './ThresholdMenuWrapper';
export { default as ThresholdMenu } from './ThresholdMenu';
@@ -1,32 +0,0 @@
import React from 'react';
import { Icons, Tooltip, TooltipTrigger, TooltipContent } from '@ohif/ui-next';
import { useMeasurementTracking } from '../../hooks/useMeasurementTracking';
/**
* TrackingStatus displays an indicator icon for viewports that have
* tracked measurements
*/
function TrackingStatus({ viewportId }: { viewportId: string }) {
const { isTracked } = useMeasurementTracking({ viewportId });
if (!isTracked) {
return null;
}
return (
<>
<Tooltip>
<TooltipTrigger asChild>
<span>
<Icons.StatusTracking className="h-4 w-4" />
</span>
</TooltipTrigger>
<TooltipContent side="bottom">
<div>Tracking</div>
</TooltipContent>
</Tooltip>
</>
);
}
export default TrackingStatus;
@@ -1 +0,0 @@
export { default } from './TrackingStatus';
@@ -1,190 +0,0 @@
import React, { useState, useEffect } from 'react';
import {
Tabs,
TabsList,
TabsTrigger,
TabsContent,
Numeric,
Select,
SelectTrigger,
SelectValue,
SelectContent,
SelectItem,
} from '@ohif/ui-next';
import { useViewportDisplaySets } from '../../hooks/useViewportDisplaySets';
import { useViewportRendering } from '../../hooks/useViewportRendering';
import { useSystem } from '@ohif/core';
import { cache } from '@cornerstonejs/core';
interface VOIManualControlMenuProps {
viewportId: string;
className?: string;
}
const TABS = {
MINMAX: 'minmax',
MANUAL: 'manual',
};
function VOIManualControlMenu({ viewportId, className }: VOIManualControlMenuProps) {
const { servicesManager } = useSystem();
const { displaySetService } = servicesManager.services;
const [activeTab, setActiveTab] = useState(TABS.MINMAX);
const { viewportDisplaySets } = useViewportDisplaySets(viewportId);
const [selectedDisplaySetUID, setSelectedDisplaySetUID] = useState<string | undefined>(
viewportDisplaySets.length > 0 ? viewportDisplaySets[0].displaySetInstanceUID : undefined
);
const { voiRange, setVOIRange, windowLevel, setWindowLevel } = useViewportRendering(viewportId, {
displaySetInstanceUID: selectedDisplaySetUID,
});
useEffect(() => {
if (viewportDisplaySets.length > 0 && !selectedDisplaySetUID) {
setSelectedDisplaySetUID(viewportDisplaySets[0].displaySetInstanceUID);
}
}, [viewportDisplaySets, selectedDisplaySetUID]);
if (!voiRange) {
return null;
}
const { upper, lower } = voiRange;
const { windowWidth, windowCenter } = windowLevel;
const selectedViewportImageIds =
displaySetService.getDisplaySetByUID(selectedDisplaySetUID)?.imageIds;
let min = Infinity;
let max = -Infinity;
if (selectedViewportImageIds) {
for (const imageId of selectedViewportImageIds) {
const image = cache.getImage(imageId);
if (image) {
min = Math.min(min, image.minPixelValue);
max = Math.max(max, image.maxPixelValue);
}
}
}
// Provide reasonable defaults if min/max couldn't be determined
if (min === Infinity || max === -Infinity) {
min = 0;
max = 255;
}
const selectedDisplaySet = viewportDisplaySets.find(
ds => ds.displaySetInstanceUID === selectedDisplaySetUID
);
return (
<div className={className}>
<div className="bg-popover w-72 rounded-lg p-4 shadow-md">
<Tabs
defaultValue={activeTab}
onValueChange={setActiveTab}
>
<div className="mb-4 flex items-center space-x-2">
{viewportDisplaySets.length > 1 && (
<Select
value={selectedDisplaySetUID}
onValueChange={setSelectedDisplaySetUID}
>
<SelectTrigger>
<SelectValue>{selectedDisplaySet?.label || 'Select Display Set'}</SelectValue>
</SelectTrigger>
<SelectContent>
{viewportDisplaySets.map(ds => (
<SelectItem
key={ds.displaySetInstanceUID}
value={ds.displaySetInstanceUID}
>
{`${ds.SeriesDescription || ''}`.trim()}
</SelectItem>
))}
</SelectContent>
</Select>
)}
<TabsList className="w-full flex-1">
<TabsTrigger
value={TABS.MINMAX}
className="flex-1"
>
Min/Max
</TabsTrigger>
<TabsTrigger
value={TABS.MANUAL}
className="flex-1"
>
Manual
</TabsTrigger>
</TabsList>
</div>
<TabsContent value={TABS.MINMAX}>
<Numeric.Container
mode="doubleRange"
min={min}
max={max}
values={[lower, upper]}
step={1}
className="space-y-1"
onChange={(vals: [number, number]) => {
const [newLower, newUpper] = vals;
if (newLower !== lower || newUpper !== upper) {
setVOIRange({ lower: newLower, upper: newUpper });
}
}}
>
<Numeric.DoubleRange showNumberInputs />
</Numeric.Container>
</TabsContent>
<TabsContent value={TABS.MANUAL}>
<div className="space-y-1">
<Numeric.Container
mode="singleRange"
min={0}
max={max}
step={1}
value={windowWidth}
className="space-y-1"
onChange={(val: number) => {
if (val !== windowWidth) {
setWindowLevel({ windowWidth: val, windowCenter });
}
}}
>
<div className="flex items-center space-x-2">
<Numeric.Label>W:</Numeric.Label>
<Numeric.SingleRange showNumberInput />
</div>
</Numeric.Container>
<Numeric.Container
mode="singleRange"
min={min}
max={max}
step={1}
value={windowCenter}
className="space-y-1"
onChange={(val: number) => {
if (val !== windowCenter) {
setWindowLevel({ windowWidth, windowCenter: val });
}
}}
>
<div className="flex items-center space-x-2">
<Numeric.Label>L:</Numeric.Label>
<Numeric.SingleRange showNumberInput />
</div>
</Numeric.Container>
</div>
</TabsContent>
</Tabs>
</div>
</div>
);
}
export default VOIManualControlMenu;
@@ -1,85 +0,0 @@
import React, { ReactNode } from 'react';
import { useSystem } from '@ohif/core';
import {
Button,
Icons,
Popover,
PopoverContent,
PopoverTrigger,
useIconPresentation,
} from '@ohif/ui-next';
import VOIManualControlMenu from './VOIManualControlMenu';
type VOIManualControlMenuWrapperProps = {
viewportId: string;
location: string;
isOpen?: boolean;
onOpen?: () => void;
onClose?: () => void;
disabled?: boolean;
};
export function VOIManualControlMenuWrapper(props: VOIManualControlMenuWrapperProps): ReactNode {
const { viewportId, location, isOpen = false, onOpen, onClose, disabled, ...rest } = props;
const { IconContainer, className: iconClassName, containerProps } = useIconPresentation();
const handleOpenChange = (openState: boolean) => {
if (openState) {
onOpen?.();
} else {
onClose?.();
}
};
const { servicesManager } = useSystem();
const { toolbarService } = servicesManager.services;
const { align, side } = toolbarService.getAlignAndSide(location);
const Icon = <Icons.WindowLevelAdvanced className={iconClassName} />;
return (
<Popover
open={isOpen}
onOpenChange={handleOpenChange}
>
<PopoverTrigger
asChild
className="flex items-center justify-center"
>
<div>
{IconContainer ? (
<IconContainer
disabled={disabled}
icon="WindowLevelAdvanced"
{...rest}
{...containerProps}
>
{Icon}
</IconContainer>
) : (
<Button
variant="ghost"
size="icon"
disabled={disabled}
>
{Icon}
</Button>
)}
</div>
</PopoverTrigger>
<PopoverContent
className="border-none bg-transparent p-0 shadow-none"
side={side}
align={align}
alignOffset={0}
sideOffset={5}
>
<VOIManualControlMenu
className="w-full"
viewportId={viewportId}
/>
</PopoverContent>
</Popover>
);
}
@@ -1,2 +0,0 @@
export { VOIManualControlMenuWrapper } from './VOIManualControlMenuWrapper';
export { default as VOIManualControlMenu } from './VOIManualControlMenu';
@@ -1,158 +0,0 @@
import React, { useEffect, useRef, useMemo, memo } from 'react';
import { utilities } from '@cornerstonejs/tools';
import { useSystem, useViewportRef, useViewportSize } from '@ohif/core';
import {
ColorbarPositionType,
TickPositionType,
ColorbarCustomization,
TickStyleType,
ContainerStyleType,
} from '../../types/Colorbar';
import { ColorbarRangeTextPosition } from '@cornerstonejs/tools/utilities/voi/colorbar/enums/ColorbarRangeTextPosition';
const { ViewportColorbar: CornerstoneViewportColorbar } = utilities.voi.colorbar;
type ColorbarProps = {
viewportId: string;
displaySetInstanceUID: string;
colormap?: any;
colormaps: any[];
activeColormapName: string;
volumeId?: string;
position: ColorbarPositionType;
tickPosition: TickPositionType;
tickStyles?: TickStyleType;
containerStyles?: ContainerStyleType;
viewportElementRef?: React.RefObject<HTMLDivElement>;
numColorbars: number;
};
export const isHorizontal = (position: ColorbarPositionType): boolean =>
position === 'top' || position === 'bottom';
/**
* ViewportColorbar Component
* A React wrapper for the cornerstone ViewportColorbar that adds a close button
* positioned appropriately based on the colorbar position.
*/
const ViewportColorbar = memo(function ViewportColorbar({
viewportId,
displaySetInstanceUID,
colormaps,
activeColormapName,
volumeId,
position,
tickPosition,
tickStyles,
numColorbars,
}: ColorbarProps) {
const containerRef = useRef<HTMLDivElement>(null);
const { servicesManager } = useSystem();
const { customizationService } = servicesManager.services;
const viewportElementRef = useViewportRef(viewportId);
const { height, width } = useViewportSize(viewportId);
// Memoize colorbar customization to prevent rerenders from unrelated customization changes
const colorbarCustomization = useMemo(() => {
return customizationService.getCustomization(
'cornerstone.colorbar'
) as unknown as ColorbarCustomization;
}, [customizationService]);
const appropriateTickPosition = useMemo(() => {
let tickPos = tickPosition;
if (position === 'left' || position === 'right') {
tickPos = position === 'left' ? 'right' : 'left';
} else {
tickPos = position === 'top' ? 'bottom' : 'top';
}
return tickPos;
}, [position, tickPosition]);
const positionTickStyles = useMemo(() => {
return colorbarCustomization?.positionTickStyles?.[position];
}, [colorbarCustomization, position]);
const positionStylesFromConfig = useMemo(() => {
return colorbarCustomization?.positionStyles?.[position] || {};
}, [colorbarCustomization, position]);
const mergedTickStyles = useMemo(() => {
return {
...(colorbarCustomization?.tickStyles || {}),
...(positionTickStyles?.style || {}),
...(tickStyles || {}),
};
}, [colorbarCustomization, positionTickStyles, tickStyles]);
const colorbarId = useMemo(() => {
return `Colorbar-${viewportId}-${displaySetInstanceUID}`;
}, [viewportId, displaySetInstanceUID]);
useEffect(() => {
if (!containerRef.current || !colormaps || !activeColormapName) {
return;
}
const viewportElement = viewportElementRef?.current;
if (!viewportElement || !colormaps?.length) {
return;
}
// Using stable references from memoized values
const csColorbar = new CornerstoneViewportColorbar({
id: colorbarId,
element: viewportElement,
container: containerRef.current,
colormaps: colormaps,
activeColormapName: activeColormapName,
volumeId,
ticks: {
position: appropriateTickPosition as ColorbarRangeTextPosition,
style: mergedTickStyles,
},
});
return () => {
if (csColorbar) {
csColorbar.destroy();
}
};
}, [
viewportId,
displaySetInstanceUID,
colormaps,
activeColormapName,
volumeId,
colorbarId,
appropriateTickPosition,
mergedTickStyles,
viewportElementRef,
]);
if (!height || !width) {
return null;
}
return (
<div
id={`colorbar-container-${viewportId}-${displaySetInstanceUID}`}
ref={containerRef}
style={{
position: 'relative',
zIndex: 1000,
boxSizing: 'border-box',
display: 'flex',
alignItems: 'center',
pointerEvents: 'auto',
minWidth: isHorizontal(position) ? width / 2.5 : '17px',
minHeight: isHorizontal(position) ? '20px' : numColorbars === 1 ? height / 3 : height / 4,
height: '1px', // sometimes flex items with min-height need a starting point for its height calculation
...positionStylesFromConfig,
}}
></div>
);
});
export default ViewportColorbar;
@@ -1,126 +0,0 @@
import React, { useEffect, useState, useMemo, memo, useCallback } from 'react';
import { useSystem } from '@ohif/core';
import { ColorbarCustomization } from '../../types/Colorbar';
import type { ColorMapPreset } from '../../types/Colormap';
import ViewportColorbar, { isHorizontal } from './ViewportColorbar';
import useViewportRendering from '../../hooks/useViewportRendering';
import { useViewportDisplaySets } from '../../hooks/useViewportDisplaySets';
type ViewportColorbarsContainerProps = {
viewportId: string;
location: number;
};
type ColorbarData = {
colorbar: {
activeColormapName: string;
colormaps: ColorMapPreset[];
volumeId?: string;
};
displaySetInstanceUID: string;
};
/**
* Container component that manages multiple colorbars for a viewport
* It interacts with the colorbarService to get/set colorbar states
*/
const ViewportColorbarsContainer = memo(function ViewportColorbarsContainer({
viewportId,
location,
}: ViewportColorbarsContainerProps) {
const [colorbars, setColorbars] = useState<ColorbarData[]>([]);
const { servicesManager } = useSystem();
const { colorbarService, customizationService, displaySetService } = servicesManager.services;
const { viewportDisplaySets, backgroundDisplaySet, foregroundDisplaySets } =
useViewportDisplaySets(viewportId);
const { colorbarPosition: position, opacity } = useViewportRendering(viewportId, {
location,
});
// Memoize the customization to prevent recomputation
const colorbarCustomization = useMemo(() => {
return customizationService.getCustomization(
'cornerstone.colorbar'
) as unknown as ColorbarCustomization;
}, [customizationService]);
// Memoize tick position
const tickPosition = useMemo(() => {
const defaultTickPosition = colorbarCustomization?.colorbarTickPosition;
return colorbarCustomization?.colorbarTickPosition || defaultTickPosition;
}, [colorbarCustomization]);
// Initial load of colorbars
useEffect(() => {
setColorbars(colorbarService.getViewportColorbar(viewportId) || []);
}, [viewportId, colorbarService]);
// Subscribe to colorbar state changes
useEffect(() => {
const { unsubscribe } = colorbarService.subscribe(
colorbarService.EVENTS.STATE_CHANGED,
(event: { viewportId: string; displaySetInstanceUID?: string; changeType: string }) => {
if (event.viewportId === viewportId) {
setColorbars(colorbarService.getViewportColorbar(viewportId) || []);
}
}
);
return () => {
unsubscribe();
};
}, [viewportId, colorbarService]);
if (!colorbars.length) {
return null;
}
const isSingleViewport = viewportDisplaySets.length === 1;
const showFullList = isSingleViewport || !isHorizontal(position);
const colorbarsToUse = showFullList
? colorbars
: colorbars.filter(({ displaySetInstanceUID }) => {
const { displaySetInstanceUID: dsUID } =
displaySetService.getDisplaySetByUID(displaySetInstanceUID) ?? {};
const targetUID =
opacity === 0 || opacity == null
? backgroundDisplaySet?.displaySetInstanceUID
: foregroundDisplaySets[0].displaySetInstanceUID;
return dsUID === targetUID;
});
return (
<div
style={{
pointerEvents: 'auto',
}}
>
<div
className="flex h-full flex-col items-center justify-center"
style={{ pointerEvents: 'auto' }}
>
{colorbarsToUse.map(colorbarInfo => {
const { colorbar, displaySetInstanceUID } = colorbarInfo;
return (
<ViewportColorbar
key={`colorbar-${viewportId}-${displaySetInstanceUID}`}
viewportId={viewportId}
displaySetInstanceUID={displaySetInstanceUID}
colormaps={colorbar.colormaps}
activeColormapName={colorbar.activeColormapName}
volumeId={colorbar.volumeId}
position={position}
tickPosition={tickPosition}
tickStyles={colorbarCustomization?.tickStyles}
numColorbars={colorbars.length}
/>
);
})}
</div>
</div>
);
});
export default ViewportColorbarsContainer;
@@ -1,5 +0,0 @@
import ViewportColorbar from './ViewportColorbar';
import ViewportColorbarsContainer from './ViewportColorbarsContainer';
export { ViewportColorbar, ViewportColorbarsContainer };
export default ViewportColorbarsContainer;
@@ -1,529 +0,0 @@
import React, { useState } from 'react';
import {
Button,
Icons,
DropdownMenu,
DropdownMenuTrigger,
DropdownMenuContent,
DropdownMenuItem,
Select,
SelectContent,
SelectItem,
SelectTrigger,
SelectValue,
Switch,
} from '@ohif/ui-next';
import { useSystem } from '@ohif/core';
import { useViewportDisplaySets } from '../../hooks/useViewportDisplaySets';
import SelectItemWithModality from '../SelectItemWithModality';
import { useViewportRendering } from '../../hooks';
function ViewportDataOverlayMenu({ viewportId }: withAppTypes<{ viewportId: string }>) {
const { commandsManager, servicesManager } = useSystem();
const [pendingForegrounds, setPendingForegrounds] = useState<string[]>([]);
const [pendingSegmentations, setPendingSegmentations] = useState<string[]>([]);
const { toggleColorbar } = useViewportRendering(viewportId);
const { hangingProtocolService, toolbarService } = servicesManager.services;
const {
backgroundDisplaySet,
potentialOverlayDisplaySets,
potentialForegroundDisplaySets,
potentialBackgroundDisplaySets,
overlayDisplaySets,
foregroundDisplaySets,
} = useViewportDisplaySets(viewportId);
const [optimisticOverlayDisplaySets, setOptimisticOverlayDisplaySets] =
useState(overlayDisplaySets);
const [thresholdOpacityEnabled, setThresholdOpacityEnabled] = useState(false);
/**
* Change the background display set
*/
const handleBackgroundSelection = (newBackgroundDisplaySet: AppTypes.DisplaySet) => {
const updatedViewports = hangingProtocolService.getViewportsRequireUpdate(
viewportId,
newBackgroundDisplaySet.displaySetInstanceUID
);
commandsManager.run('setDisplaySetsForViewports', {
viewportsToUpdate: updatedViewports,
});
};
/**
* Replace a display set layer with a new one
*/
const handleReplaceDisplaySetLayer = (
currentDisplaySetInstanceUID: string,
newDisplaySetInstanceUID: string
) => {
// Remove current display set
commandsManager.runCommand('removeDisplaySetLayer', {
viewportId,
displaySetInstanceUID: currentDisplaySetInstanceUID,
});
setTimeout(() => {
commandsManager.runCommand('addDisplaySetAsLayer', {
viewportId,
displaySetInstanceUID: newDisplaySetInstanceUID,
});
}, 0);
};
/**
* Remove a display set layer
*/
const handleRemoveDisplaySetLayer = (displaySetInstanceUID: string) => {
const optimisticOverlayDisplaySetsIndex = optimisticOverlayDisplaySets.findIndex(
displaySet => displaySet.displaySetInstanceUID === displaySetInstanceUID
);
if (optimisticOverlayDisplaySetsIndex !== -1) {
setOptimisticOverlayDisplaySets(prevOptimisticOverlayDisplaySets => {
return prevOptimisticOverlayDisplaySets.filter(
displaySet => displaySet.displaySetInstanceUID !== displaySetInstanceUID
);
});
}
commandsManager.runCommand('removeDisplaySetLayer', {
viewportId,
displaySetInstanceUID,
});
};
/**
* Add a display set as a layer
*/
const handleAddDisplaySetAsLayer = (displaySetInstanceUID: string) => {
commandsManager.runCommand('addDisplaySetAsLayer', {
viewportId,
displaySetInstanceUID,
});
};
/**
* Handle overlay display set selection change
*/
const handleOverlaySelectionChange = (
currentDisplaySet: AppTypes.DisplaySet,
newDisplaySetInstanceUID: string
) => {
if (newDisplaySetInstanceUID === currentDisplaySet.displaySetInstanceUID) {
return;
}
// Find the selected display set
const selectedDisplaySet = potentialOverlayDisplaySets.find(
ds => ds.displaySetInstanceUID === newDisplaySetInstanceUID
);
if (selectedDisplaySet) {
setOptimisticOverlayDisplaySets(prevOptimisticOverlayDisplaySets => {
const currentDisplaySetIndex = prevOptimisticOverlayDisplaySets.findIndex(
displaySet => displaySet.displaySetInstanceUID === currentDisplaySet.displaySetInstanceUID
);
return [
...prevOptimisticOverlayDisplaySets.slice(0, currentDisplaySetIndex),
selectedDisplaySet,
...prevOptimisticOverlayDisplaySets.slice(currentDisplaySetIndex + 1),
];
});
handleReplaceDisplaySetLayer(
currentDisplaySet.displaySetInstanceUID,
selectedDisplaySet.displaySetInstanceUID
);
}
};
/**
* Handle foreground display set selection change
*/
const handleForegroundSelectionChange = (
currentDisplaySet: AppTypes.DisplaySet,
newDisplaySetInstanceUID: string
) => {
if (newDisplaySetInstanceUID === currentDisplaySet.displaySetInstanceUID) {
return;
}
// Find the selected display set
const selectedDisplaySet = potentialForegroundDisplaySets.find(
ds => ds.displaySetInstanceUID === newDisplaySetInstanceUID
);
if (selectedDisplaySet) {
handleReplaceDisplaySetLayer(
currentDisplaySet.displaySetInstanceUID,
selectedDisplaySet.displaySetInstanceUID
);
}
};
/**
* Handle pending segmentation selection
*/
const handlePendingSegmentationSelection = (pendingId: string, displaySetInstanceUID: string) => {
const selectedDisplaySet = potentialOverlayDisplaySets.find(
ds => ds.displaySetInstanceUID === displaySetInstanceUID
);
if (selectedDisplaySet) {
setOptimisticOverlayDisplaySets(prevOptimisticOverlayDisplaySets => [
...prevOptimisticOverlayDisplaySets,
selectedDisplaySet,
]);
handleAddDisplaySetAsLayer(selectedDisplaySet.displaySetInstanceUID);
// Remove this pending segmentation from the list
setPendingSegmentations(pendingSegmentations.filter(id => id !== pendingId));
}
};
/**
* Handle pending foreground selection
*/
const handlePendingForegroundSelection = (pendingId: string, displaySetInstanceUID: string) => {
const selectedDisplaySet = potentialForegroundDisplaySets.find(
ds => ds.displaySetInstanceUID === displaySetInstanceUID
);
if (selectedDisplaySet) {
handleAddDisplaySetAsLayer(selectedDisplaySet.displaySetInstanceUID);
// Remove this pending foreground from the list
setPendingForegrounds(pendingForegrounds.filter(id => id !== pendingId));
}
};
// Check if the advanced window level components exist in toolbar
const hasAdvancedRenderingControls = !!toolbarService.getButton('AdvancedRenderingControls');
const hasOpacityMenu = !!toolbarService.getButton('opacityMenu');
const handleThresholdOpacityToggle = () => {
const newValue = !thresholdOpacityEnabled;
if (hasAdvancedRenderingControls) {
toggleColorbar();
}
setThresholdOpacityEnabled(newValue);
};
return (
<div
className="bg-popover flex h-full w-[275px] flex-col rounded rounded-md p-1.5"
data-cy={`viewport-data-overlay-menu-${viewportId}`}
>
{/* Top buttons row */}
<div className={`flex`}>
<Button
variant="ghost"
className="text-primary flex items-center p-1"
onClick={() => {
// Add a new pending foreground slot with a unique ID
setPendingForegrounds([...pendingForegrounds, `pending-${Date.now()}`]);
}}
disabled={potentialForegroundDisplaySets.length === 0}
>
<Icons.Plus className="h-4 w-4" />
Foreground
</Button>
<Button
variant="ghost"
className="text-primary ml-2 flex items-center"
disabled={potentialOverlayDisplaySets.length === 0}
onClick={() => {
setPendingSegmentations([...pendingSegmentations, `seg-${Date.now()}`]);
}}
dataCY={`AddSegmentationDataOverlay-${viewportId}`}
>
<Icons.Plus className="h-4 w-4" />
Segmentation
</Button>
</div>
<div className="">
{/* Overlays Segmentation section */}
<div className="my-2 ml-1">
{optimisticOverlayDisplaySets.map(displaySet => (
<div
key={displaySet.displaySetInstanceUID}
className="mb-1 flex items-center"
>
<Icons.LayerSegmentation className="text-muted-foreground mr-1 h-6 w-6 flex-shrink-0" />
<Select
value={displaySet.displaySetInstanceUID}
onValueChange={value => handleOverlaySelectionChange(displaySet, value)}
>
<SelectTrigger className="flex-1">
<SelectValue
data-cy={`overlay-ds-select-value-${displaySet.label?.toUpperCase()}`}
>
{displaySet.label?.toUpperCase()}
</SelectValue>
</SelectTrigger>
<SelectContent>
{/* Include both potential overlays and the current overlay */}
<SelectItem
key={displaySet.displaySetInstanceUID}
value={displaySet.displaySetInstanceUID}
className="pr-2"
>
<SelectItemWithModality displaySet={displaySet} />
</SelectItem>
{potentialOverlayDisplaySets.map(item => (
<SelectItem
key={item.displaySetInstanceUID}
value={item.displaySetInstanceUID}
className="pr-2"
>
<SelectItemWithModality displaySet={item} />
</SelectItem>
))}
</SelectContent>
</Select>
<DropdownMenu>
<DropdownMenuTrigger asChild>
<Button
variant="ghost"
size="icon"
className="ml-2 flex-shrink-0"
dataCY={`overlay-ds-more-button-${displaySet.label?.toUpperCase()}`}
>
<Icons.More className="h-4 w-4" />
</Button>
</DropdownMenuTrigger>
<DropdownMenuContent align="start">
<DropdownMenuItem
data-cy={`overlay-ds-remove-button-${displaySet.label?.toUpperCase()}`}
onClick={() => handleRemoveDisplaySetLayer(displaySet.displaySetInstanceUID)}
>
Remove
</DropdownMenuItem>
</DropdownMenuContent>
</DropdownMenu>
</div>
))}
{pendingSegmentations.map(pendingId => (
<div
key={pendingId}
className="mb-2 flex items-center"
>
<Icons.LayerSegmentation className="text-muted-foreground mr-1 h-6 w-6 flex-shrink-0" />
<Select
value=""
onValueChange={value => handlePendingSegmentationSelection(pendingId, value)}
>
<SelectTrigger className="flex-1">
<SelectValue placeholder="SELECT A SEGMENTATION" />
</SelectTrigger>
<SelectContent>
{potentialOverlayDisplaySets.map(item => (
<SelectItem
key={item.displaySetInstanceUID}
value={item.displaySetInstanceUID}
className="pr-2"
>
<SelectItemWithModality
displaySet={item}
dataCY={`${item.label}`}
/>
</SelectItem>
))}
</SelectContent>
</Select>
<DropdownMenu>
<DropdownMenuTrigger asChild>
<Button
variant="ghost"
size="icon"
className="ml-2 flex-shrink-0"
>
<Icons.More className="h-4 w-4" />
</Button>
</DropdownMenuTrigger>
<DropdownMenuContent align="start">
<DropdownMenuItem
onClick={() => {
// Remove this pending segmentation
setPendingSegmentations(pendingSegmentations.filter(id => id !== pendingId));
}}
>
Cancel
</DropdownMenuItem>
</DropdownMenuContent>
</DropdownMenu>
</div>
))}
</div>
{/* Foregrounds section */}
<div className="my-2 px-1">
{foregroundDisplaySets.map((displaySet, index) => (
<div
key={displaySet.displaySetInstanceUID}
className="mb-1 flex items-center"
>
<Icons.LayerForeground className="text-muted-foreground mr-1 h-6 w-6 flex-shrink-0" />
<Select
value={displaySet.displaySetInstanceUID}
onValueChange={value => handleForegroundSelectionChange(displaySet, value)}
>
<SelectTrigger className="flex-1">
<SelectValue>{displaySet.label?.toUpperCase()}</SelectValue>
</SelectTrigger>
<SelectContent>
{/* Include both potential foregrounds and the current foreground */}
<SelectItem
key={displaySet.displaySetInstanceUID}
value={displaySet.displaySetInstanceUID}
className="pr-2"
>
<SelectItemWithModality displaySet={displaySet} />
</SelectItem>
{potentialForegroundDisplaySets.map(item => (
<SelectItem
key={item.displaySetInstanceUID}
value={item.displaySetInstanceUID}
className="pr-2"
>
<SelectItemWithModality displaySet={item} />
</SelectItem>
))}
</SelectContent>
</Select>
<DropdownMenu>
<DropdownMenuTrigger asChild>
<Button
variant="ghost"
size="icon"
className="ml-2 flex-shrink-0"
>
<Icons.More className="h-4 w-4" />
</Button>
</DropdownMenuTrigger>
<DropdownMenuContent align="start">
<DropdownMenuItem
onClick={() => handleRemoveDisplaySetLayer(displaySet.displaySetInstanceUID)}
>
Remove
</DropdownMenuItem>
</DropdownMenuContent>
</DropdownMenu>
</div>
))}
{pendingForegrounds.map(pendingId => (
<div
key={pendingId}
className="mb-2 flex items-center"
>
<Icons.LayerForeground className="text-muted-foreground mr-1 h-6 w-6 flex-shrink-0" />
<Select
value=""
onValueChange={value => handlePendingForegroundSelection(pendingId, value)}
>
<SelectTrigger className="flex-1">
<SelectValue placeholder="SELECT A FOREGROUND" />
</SelectTrigger>
<SelectContent>
{potentialForegroundDisplaySets.map(item => (
<SelectItem
key={item.displaySetInstanceUID}
value={item.displaySetInstanceUID}
className="pr-2"
>
<SelectItemWithModality displaySet={item} />
</SelectItem>
))}
</SelectContent>
</Select>
<DropdownMenu>
<DropdownMenuTrigger asChild>
<Button
variant="ghost"
size="icon"
className="ml-2 flex-shrink-0"
>
<Icons.More className="h-4 w-4" />
</Button>
</DropdownMenuTrigger>
<DropdownMenuContent align="start">
<DropdownMenuItem
onClick={() => {
// Remove this pending foreground
setPendingForegrounds(pendingForegrounds.filter(id => id !== pendingId));
}}
>
Cancel
</DropdownMenuItem>
</DropdownMenuContent>
</DropdownMenu>
</div>
))}
</div>
{/* Background section */}
<div className="mt-1 mb-1 flex items-center px-1">
<Icons.LayerBackground className="text-muted-foreground mr-1 h-6 w-6 flex-shrink-0" />
<Select
value={backgroundDisplaySet?.displaySetInstanceUID}
onValueChange={value => {
const selectedDisplaySet = potentialBackgroundDisplaySets.find(
ds => ds.displaySetInstanceUID === value
);
if (selectedDisplaySet) {
handleBackgroundSelection(selectedDisplaySet);
}
}}
>
<SelectTrigger className="flex-1">
<SelectValue>
{(
backgroundDisplaySet?.SeriesDescription ||
backgroundDisplaySet?.label ||
'background'
).toUpperCase()}
</SelectValue>
</SelectTrigger>
<SelectContent>
{potentialBackgroundDisplaySets.map(displaySet => (
<SelectItem
key={displaySet.displaySetInstanceUID}
value={displaySet.displaySetInstanceUID}
className="pr-2"
>
<SelectItemWithModality displaySet={displaySet} />
</SelectItem>
))}
</SelectContent>
</Select>
</div>
</div>
{foregroundDisplaySets.length > 0 && (hasAdvancedRenderingControls || hasOpacityMenu) && (
<div className="mt-1 ml-7">
<div className="flex items-center">
<Switch
id="threshold-opacity-switch"
className="mr-2"
checked={thresholdOpacityEnabled}
onCheckedChange={handleThresholdOpacityToggle}
/>
<label
htmlFor="threshold-opacity-switch"
className="text-muted-foreground cursor-pointer text-sm"
onClick={() => setThresholdOpacityEnabled(!thresholdOpacityEnabled)}
>
Control threshold & opacity
</label>
</div>
</div>
)}
</div>
);
}
export default ViewportDataOverlayMenu;
@@ -1,91 +0,0 @@
import React, { ReactNode } from 'react';
import { useSystem } from '@ohif/core';
import {
Button,
Icons,
Popover,
PopoverContent,
PopoverTrigger,
useIconPresentation,
} from '@ohif/ui-next';
import ViewportDataOverlayMenu from './ViewportDataOverlayMenu';
import { useViewportDisplaySets } from '../../hooks/useViewportDisplaySets';
type DataOverlayMenuProps = {
viewportId: string;
location: string;
isOpen?: boolean;
onOpen?: () => void;
onClose?: () => void;
disabled?: boolean;
id?: string;
};
export function ViewportDataOverlayMenuWrapper(props: DataOverlayMenuProps): ReactNode {
const { viewportId, location, isOpen = false, onOpen, onClose, disabled, ...rest } = props;
const { viewportDisplaySets: displaySets } = useViewportDisplaySets(viewportId);
const { IconContainer, className: iconClassName, containerProps } = useIconPresentation();
const handleOpenChange = (openState: boolean) => {
if (openState) {
onOpen?.();
} else {
onClose?.();
}
};
const { servicesManager } = useSystem();
const { toolbarService } = servicesManager.services;
const { align, side } = toolbarService.getAlignAndSide(location);
const Icon = <Icons.ViewportViews className={iconClassName} />;
const idProp = rest.id ? { id: `${rest.id}-${viewportId}` } : {};
return (
<Popover
open={isOpen}
onOpenChange={handleOpenChange}
>
<PopoverTrigger
asChild
className="flex items-center justify-center"
>
<div>
{IconContainer ? (
<IconContainer
disabled={disabled}
icon="ViewportViews"
{...rest}
{...containerProps}
{...idProp}
>
{Icon}
</IconContainer>
) : (
<Button
variant="ghost"
size="icon"
disabled={disabled}
>
{Icon}
</Button>
)}
</div>
</PopoverTrigger>
<PopoverContent
className="border-none bg-transparent p-0 shadow-none"
side={side}
align={align}
alignOffset={0}
sideOffset={5}
>
<ViewportDataOverlayMenu
className="w-full"
viewportId={viewportId}
displaySets={displaySets}
/>
</PopoverContent>
</Popover>
);
}
@@ -0,0 +1,136 @@
import React, { useEffect, useState } from 'react';
import { Button, Icons, Separator } from '@ohif/ui-next';
import { SegmentationRepresentations } from '@cornerstonejs/tools/enums';
function ViewportSegmentationMenu({
viewportId,
servicesManager,
}: withAppTypes<{ viewportId: string }>) {
const { segmentationService } = servicesManager.services;
const [activeSegmentations, setActiveSegmentations] = useState([]);
const [availableSegmentations, setAvailableSegmentations] = useState([]);
useEffect(() => {
const updateSegmentations = () => {
const active = segmentationService.getSegmentationRepresentations(viewportId);
setActiveSegmentations(active);
const all = segmentationService.getSegmentations();
const available = all.filter(
seg => !active.some(activeSeg => activeSeg.segmentationId === seg.segmentationId)
);
setAvailableSegmentations(available);
};
updateSegmentations();
const subscriptions = [
segmentationService.EVENTS.SEGMENTATION_MODIFIED,
segmentationService.EVENTS.SEGMENTATION_REMOVED,
segmentationService.EVENTS.SEGMENTATION_REPRESENTATION_MODIFIED,
].map(event => segmentationService.subscribe(event, updateSegmentations));
return () => {
subscriptions.forEach(subscription => subscription.unsubscribe());
};
}, [segmentationService, viewportId]);
const toggleSegmentationRepresentationVisibility = (
segmentationId,
type = SegmentationRepresentations.Labelmap
) => {
segmentationService.toggleSegmentationRepresentationVisibility(viewportId, {
segmentationId,
type,
});
};
const addSegmentationToViewport = segmentationId => {
segmentationService.addSegmentationRepresentation(viewportId, { segmentationId });
};
const removeSegmentationFromViewport = segmentationId => {
segmentationService.removeSegmentationRepresentations(viewportId, {
segmentationId,
});
};
return (
<div className="bg-muted flex h-full w-[262px] flex-col rounded p-3">
<span className="text-muted-foreground mb-2 text-xs font-semibold">Current Viewport</span>
<ul className="space-y-1">
{activeSegmentations.map(segmentation => (
<li
key={segmentation.id}
className="flex items-center text-sm"
>
<Button
variant="ghost"
size="icon"
className="text-muted-foreground mr-2"
onClick={() => removeSegmentationFromViewport(segmentation.segmentationId)}
>
<Icons.Minus className="h-6 w-6" />
</Button>
<span className="text-foreground flex-grow">{segmentation.label}</span>
{segmentation.visible ? (
<Button
variant="ghost"
size="icon"
className="text-muted-foreground"
onClick={() =>
toggleSegmentationRepresentationVisibility(
segmentation.segmentationId,
segmentation.type
)
}
>
<Icons.Hide className="h-6 w-6" />
</Button>
) : (
<Button
variant="ghost"
size="icon"
className="text-muted-foreground"
onClick={() =>
toggleSegmentationRepresentationVisibility(
segmentation.segmentationId,
segmentation.type
)
}
>
<Icons.Show className="h-6 w-6" />
</Button>
)}
</li>
))}
</ul>
{availableSegmentations.length > 0 && (
<>
<Separator className="bg-input mb-3" />
<span className="text-muted-foreground mb-2 text-xs font-semibold">Available</span>
<ul className="space-y-1">
{availableSegmentations.map(({ segmentationId, label }) => (
<li
key={segmentationId}
className="flex items-center text-sm"
>
<Button
variant="ghost"
size="icon"
className="text-muted-foreground mr-2"
onClick={() => addSegmentationToViewport(segmentationId)}
>
<Icons.Plus className="h-6 w-6" />
</Button>
<span className="text-foreground/60">{label}</span>
</li>
))}
</ul>
</>
)}
</div>
);
}
export default ViewportSegmentationMenu;
@@ -0,0 +1,83 @@
import React, { ReactNode, useEffect, useState } from 'react';
import { Button, Icons, Popover, PopoverContent, PopoverTrigger } from '@ohif/ui-next';
import ViewportSegmentationMenu from './ViewportSegmentationMenu';
import classNames from 'classnames';
import { useSegmentations } from '../../hooks/useSegmentations';
export function ViewportSegmentationMenuWrapper({
viewportId,
displaySets,
servicesManager,
commandsManager,
location,
}: withAppTypes<{
viewportId: string;
element: HTMLElement;
}>): ReactNode {
const { viewportActionCornersService, viewportGridService } = servicesManager.services;
const segmentations = useSegmentations({ servicesManager });
const activeViewportId = viewportGridService.getActiveViewportId();
const isActiveViewport = viewportId === activeViewportId;
const { align, side } = getAlignAndSide(viewportActionCornersService, location);
if (!segmentations?.length) {
return null;
}
return (
<Popover>
<PopoverTrigger
asChild
className="flex items-center justify-center"
>
<Button
variant="ghost"
size="icon"
>
<Icons.ViewportViews
className={classNames(
'text-highlight',
isActiveViewport ? 'visible' : 'invisible group-hover/pane:visible'
)}
/>
</Button>
</PopoverTrigger>
<PopoverContent
className="border-none bg-transparent p-0 shadow-none"
side={side}
align={align}
alignOffset={-15}
sideOffset={5}
>
<ViewportSegmentationMenu
className="w-full"
viewportId={viewportId}
displaySets={displaySets}
servicesManager={servicesManager}
commandsManager={commandsManager}
/>
</PopoverContent>
</Popover>
);
}
const getAlignAndSide = (viewportActionCornersService, location) => {
const ViewportActionCornersLocations = viewportActionCornersService.LOCATIONS;
switch (location) {
case ViewportActionCornersLocations.topLeft:
return { align: 'start', side: 'bottom' };
case ViewportActionCornersLocations.topRight:
return { align: 'end', side: 'bottom' };
case ViewportActionCornersLocations.bottomLeft:
return { align: 'start', side: 'top' };
case ViewportActionCornersLocations.bottomRight:
return { align: 'end', side: 'top' };
default:
console.debug('Unknown location, defaulting to bottom-start');
return { align: 'start', side: 'bottom' };
}
};
@@ -0,0 +1,11 @@
import React, { ReactNode } from 'react';
import { ViewportSegmentationMenuWrapper } from './ViewportSegmentationMenuWrapper';
export function getViewportDataOverlaySettingsMenu(
props: withAppTypes<{
viewportId: string;
element: HTMLElement;
}>
): ReactNode {
return <ViewportSegmentationMenuWrapper {...props} />;
}
@@ -1,164 +0,0 @@
import { utilities as csUtils } from '@cornerstonejs/core';
export const DEFAULT_COLORMAP = 'hsv';
export const DEFAULT_OPACITY = 0.5;
export const DEFAULT_OPACITY_PERCENT = DEFAULT_OPACITY * 100;
export const DERIVED_OVERLAY_MODALITIES = ['SEG', 'RTSTRUCT'];
/**
* Get modality-specific color and opacity settings from the customization service
*/
export function getModalityOverlayColormap(customizationService, modality) {
const modalityOverlayDefaultColorMaps = customizationService?.getCustomization(
'cornerstone.modalityOverlayDefaultColorMaps'
) || { defaultSettings: {} };
return (
modalityOverlayDefaultColorMaps.defaultSettings[modality] || {
colormap: DEFAULT_COLORMAP,
opacity: DEFAULT_OPACITY,
}
);
}
/**
* Identifies display sets that can be used as overlays for a specific viewport.
*
* "Enhanced" display sets are those that:
* 1. Are not already in the viewport
* 2. Are evaluated for their ability to be overlaid onto the background display set
* 3. Have an "isOverlayable" flag indicating if they're compatible with the viewport
*
* A display set is considered overlayable when:
* - The background display set is reconstructable
* - The display set is not unsupported
* - The Frame of Reference matches the background display set
* - For non-derived modalities: background can be a volume and display set is either multiframe or valid volume
*
* @returns {Object} Object containing:
* - viewportDisplaySets: Display sets already in the viewport
* - enhancedDisplaySets: Other display sets with overlayability assessment
*/
export function getEnhancedDisplaySets({ viewportId, services }) {
const { displaySetService, viewportGridService } = services;
const displaySetsUIDs = viewportGridService.getDisplaySetsUIDsForViewport(viewportId);
if (!displaySetsUIDs?.length) {
return {
viewportDisplaySets: [],
enhancedDisplaySets: [],
};
}
const allDisplaySets = displaySetService.getActiveDisplaySets();
const otherDisplaySets = allDisplaySets.filter(
displaySet => !displaySetsUIDs.includes(displaySet.displaySetInstanceUID)
);
const viewportDisplaySets = displaySetsUIDs.map(displaySetUID =>
displaySetService.getDisplaySetByUID(displaySetUID)
);
const backgroundCanBeVolume = csUtils.isValidVolume(viewportDisplaySets[0].imageIds || []);
const backgroundDisplaySet = viewportDisplaySets[0];
const enhancedDisplaySets = otherDisplaySets.map(displaySet => {
if (!backgroundDisplaySet.isReconstructable) {
return {
...displaySet,
isOverlayable: false,
};
}
if (displaySet.unsupported) {
return {
...displaySet,
isOverlayable: false,
};
}
// Check if Frame of Reference matches
if (
displaySet.FrameOfReferenceUID &&
displaySet.FrameOfReferenceUID !== backgroundDisplaySet.FrameOfReferenceUID
) {
return {
...displaySet,
isOverlayable: false,
};
}
// Special handling for derived modalities
if (!DERIVED_OVERLAY_MODALITIES.includes(displaySet.Modality)) {
if (!backgroundCanBeVolume) {
return {
...displaySet,
isOverlayable: false,
};
}
const imageIds = displaySet.imageIds || displaySet.images?.map(image => image.imageId);
const isMultiframe = displaySet.isMultiFrame;
if (!isMultiframe && imageIds?.length > 0 && !csUtils.isValidVolume(imageIds)) {
return {
...displaySet,
isOverlayable: false,
};
}
}
return {
...displaySet,
isOverlayable: true,
};
});
return {
viewportDisplaySets,
enhancedDisplaySets,
};
}
/**
* Sort function: puts disabled items (isOverlayable: false) at the end
*/
export const sortByOverlayable = (a, b) => {
if (a.isOverlayable === b.isOverlayable) {
return 0;
}
return a.isOverlayable ? -1 : 1;
};
/**
* Create display set options based on modality and opacity settings
*/
export function createColormapOverlayDisplaySetOptions(displaySet, opacity, customizationService) {
if (displaySet.Modality === 'SEG') {
return {};
}
const modalitySettings = getModalityOverlayColormap(customizationService, displaySet.Modality);
return {
colormap: {
name: modalitySettings.colormap || DEFAULT_COLORMAP,
opacity: opacity / 100, // Convert from percentage to 0-1 range
},
};
}
/**
* Get segmentations that can be added as overlays to the viewport
*
* Note: This function is deprecated as we now use display sets for segmentations
*/
export function getAvailableSegmentations(segmentationService) {
const segmentations = segmentationService.getSegmentations() || [];
return segmentations.map(segmentation => ({
segmentationId: segmentation.segmentationId,
label: segmentation.label || 'Segmentation',
segments: segmentation.segments,
frameOfReferenceUID: segmentation.frameOfReferenceUID,
}));
}
@@ -1,241 +0,0 @@
import React from 'react';
import { cn, Icons, useIconPresentation } from '@ohif/ui-next';
import { useSystem } from '@ohif/core';
import { Enums } from '@cornerstonejs/core';
import { Popover, PopoverTrigger, PopoverContent, Button, useViewportGrid } from '@ohif/ui-next';
function ViewportOrientationMenu({
location,
viewportId,
displaySets,
isOpen = false,
onOpen,
onClose,
disabled,
...props
}: withAppTypes<{
location?: string;
viewportId: string;
displaySets: AppTypes.DisplaySet[];
isOpen?: boolean;
onOpen?: () => void;
onClose?: () => void;
disabled?: boolean;
}>) {
const { servicesManager, commandsManager } = useSystem();
const { cornerstoneViewportService, toolbarService } = servicesManager.services;
const viewportInfo = cornerstoneViewportService.getViewportInfo(viewportId);
const viewportOrientation = viewportInfo.getOrientation();
const [gridState] = useViewportGrid();
const viewportIdToUse = viewportId || gridState.activeViewportId;
const { IconContainer, className: iconClassName, containerProps } = useIconPresentation();
const [currentOrientation, setCurrentOrientation] = React.useState<string>(
typeof viewportOrientation === 'string' ? viewportOrientation : 'axial'
);
const handleOrientationChange = (orientation: string) => {
setCurrentOrientation(orientation);
const viewportInfo = cornerstoneViewportService.getViewportInfo(viewportIdToUse);
const currentViewportType = viewportInfo?.getViewportType();
if (!displaySets.length) {
return;
}
// Check if at least one displaySet is reconstructable
const hasReconstructableDisplaySet = displaySets.some(ds => ds.isReconstructable);
if (!hasReconstructableDisplaySet) {
console.warn('Cannot change orientation: No reconstructable display sets in viewport');
return;
}
// Set the orientation enum based on the selected orientation
let orientationEnum;
switch (orientation.toLowerCase()) {
case 'axial':
orientationEnum = Enums.OrientationAxis.AXIAL;
break;
case 'sagittal':
orientationEnum = Enums.OrientationAxis.SAGITTAL;
break;
case 'coronal':
orientationEnum = Enums.OrientationAxis.CORONAL;
break;
case 'reformat':
orientationEnum = Enums.OrientationAxis.REFORMAT;
break;
default:
orientationEnum = Enums.OrientationAxis.ACQUISITION;
}
const displaySetUIDs = displaySets.map(ds => ds.displaySetInstanceUID);
// If viewport is not already a volume type, we need to convert it
if (currentViewportType !== Enums.ViewportType.ORTHOGRAPHIC) {
// Configure the viewport to be a volume viewport with current display sets
const updatedViewport = {
viewportId: viewportIdToUse,
displaySetInstanceUIDs: displaySetUIDs,
viewportOptions: {
viewportType: Enums.ViewportType.ORTHOGRAPHIC,
orientation: orientationEnum,
},
displaySetOptions: displaySetUIDs.map(() => ({})),
};
// Update the viewport to be a volume viewport
commandsManager.run('setDisplaySetsForViewports', {
viewportsToUpdate: [updatedViewport],
});
} else {
// Set the viewport orientation
commandsManager.runCommand('setViewportOrientation', {
viewportId: viewportIdToUse,
orientation: orientationEnum,
});
}
// Close the menu after selection
onClose?.();
};
const handleOpenChange = (openState: boolean) => {
if (openState) {
onOpen?.();
} else {
onClose?.();
}
};
if (!displaySets.length) {
return null;
}
// Get proper alignment and side based on the location using toolbar service
const { align, side } = toolbarService.getAlignAndSide(Number(location));
const Icon = React.createElement(getIcon(currentOrientation), { className: iconClassName });
return (
<Popover
open={isOpen}
onOpenChange={handleOpenChange}
>
<PopoverTrigger
asChild
className={cn('flex items-center justify-center')}
>
<div>
{IconContainer ? (
<IconContainer
disabled={disabled}
icon="OrientationSwitch"
{...props}
{...containerProps}
>
{Icon}
</IconContainer>
) : (
<Button
variant="ghost"
size="icon"
disabled={disabled}
onClick={() => {}}
>
{Icon}
</Button>
)}
</div>
</PopoverTrigger>
<PopoverContent
className="h-[170px] w-[130px] flex-shrink-0 flex-col items-start rounded p-1"
align={align}
side={side}
style={{ left: 0 }}
>
<Button
variant="ghost"
className="flex h-7 w-full flex-shrink-0 items-center justify-start self-stretch px-1 py-0"
onClick={() => handleOrientationChange('axial')}
>
<div className="mr-1 flex w-6 items-center justify-start">
{currentOrientation === 'axial' ? (
<Icons.Checked className="text-primary h-6 w-6" />
) : null}
</div>
<div className="flex-1 text-left">Axial</div>
</Button>
<Button
variant="ghost"
className="flex h-7 w-full flex-shrink-0 items-center justify-start self-stretch px-1 py-0"
onClick={() => handleOrientationChange('sagittal')}
>
<div className="mr-1 flex w-6 items-center justify-start">
{currentOrientation === 'sagittal' ? (
<Icons.Checked className="text-primary h-6 w-6" />
) : null}
</div>
<div className="flex-1 text-left">Sagittal</div>
</Button>
<Button
variant="ghost"
className="flex h-7 w-full flex-shrink-0 items-center justify-start self-stretch px-1 py-0"
onClick={() => handleOrientationChange('coronal')}
>
<div className="mr-1 flex w-6 items-center justify-start">
{currentOrientation === 'coronal' ? (
<Icons.Checked className="text-primary h-6 w-6" />
) : null}
</div>
<div className="flex-1 text-left">Coronal</div>
</Button>
<Button
variant="ghost"
className="flex h-7 w-full flex-shrink-0 items-center justify-start self-stretch px-1 py-0"
onClick={() => handleOrientationChange('acquisition')}
>
<div className="mr-1 flex w-6 items-center justify-start">
{currentOrientation === 'acquisition' ? (
<Icons.Checked className="text-primary h-6 w-6" />
) : null}
</div>
<div className="flex-1 text-left">Acquisition</div>
</Button>
{/* Divider */}
<div className="mx-1 my-2 border-t border-white/20" />
<Button
variant="ghost"
className="flex h-7 w-full flex-shrink-0 items-center justify-start self-stretch px-1 py-0"
onClick={() => handleOrientationChange('reformat')}
>
<div className="mr-1 flex w-6 items-center justify-start">
{currentOrientation === 'reformat' ? (
<Icons.Checked className="text-primary h-6 w-6" />
) : null}
</div>
<div className="flex-1 text-left">Reformat</div>
</Button>
</PopoverContent>
</Popover>
);
}
const getIcon = (orientationName: string) => {
switch (orientationName.toLowerCase()) {
case 'axial':
return Icons.OrientationSwitchA;
case 'sagittal':
return Icons.OrientationSwitchS;
case 'coronal':
return Icons.OrientationSwitchC;
case 'reformat':
return Icons.OrientationSwitchR;
case 'acquisition':
return Icons.OrientationSwitch;
default:
return Icons.OrientationSwitch;
}
};
export default ViewportOrientationMenu;
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