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+296
-235
@@ -1,52 +1,72 @@
|
||||
version: 2.1
|
||||
|
||||
### ABOUT
|
||||
#
|
||||
# This configuration powers our Circleci.io integration
|
||||
#
|
||||
# Note:
|
||||
# Netlify works independently from this configuration to
|
||||
# create pull request previews and to update `https://docs.ohif.org`
|
||||
###
|
||||
|
||||
## https://github.com/cypress-io/circleci-orb
|
||||
##
|
||||
orbs:
|
||||
codecov: codecov/codecov@1.0.5
|
||||
cypress: cypress-io/cypress@3.4.2
|
||||
cypress: cypress-io/cypress@3.3.1
|
||||
|
||||
executors:
|
||||
cypress-custom:
|
||||
description: |
|
||||
Single Docker container used to run Cypress Tests
|
||||
docker:
|
||||
- image: cimg/node:<< parameters.node-version >>-browsers
|
||||
parameters:
|
||||
node-version:
|
||||
default: '18.16.1'
|
||||
description: |
|
||||
The version of Node to run your tests with.
|
||||
type: string
|
||||
|
||||
defaults: &defaults
|
||||
docker:
|
||||
- image: cimg/node:20.18.1
|
||||
- image: cimg/node:18.18
|
||||
environment:
|
||||
TERM: xterm
|
||||
TERM: xterm # Enable colors in term
|
||||
QUICK_BUILD: true
|
||||
working_directory: ~/repo
|
||||
|
||||
commands:
|
||||
install_bun:
|
||||
steps:
|
||||
- restore_cache:
|
||||
keys:
|
||||
- bun-cache-v2-{{ arch }}-latest
|
||||
- run:
|
||||
name: Install Bun
|
||||
command: |
|
||||
if [ ! -d "$HOME/.bun" ]; then
|
||||
curl -fsSL https://bun.sh/install | bash
|
||||
fi
|
||||
echo 'export BUN_INSTALL="$HOME/.bun"' >> $BASH_ENV
|
||||
echo 'export PATH="$BUN_INSTALL/bin:$PATH"' >> $BASH_ENV
|
||||
source $BASH_ENV
|
||||
- save_cache:
|
||||
key: bun-cache-v2-{{ arch }}-latest
|
||||
paths:
|
||||
- ~/.bun
|
||||
|
||||
jobs:
|
||||
###
|
||||
# Workflow: PR_CHECKS
|
||||
###
|
||||
UNIT_TESTS:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
steps:
|
||||
- install_bun
|
||||
# Update yarn
|
||||
- run: yarn -v
|
||||
- run: node --version
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: bun install --no-save
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache ## Cache yarn and Cypress
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# RUN TESTS
|
||||
- run:
|
||||
name: 'JavaScript Test Suite'
|
||||
command: bun run test:unit:ci
|
||||
command: yarn run test:unit:ci
|
||||
# platform/app
|
||||
- run:
|
||||
name: 'VIEWER: Combine report output'
|
||||
@@ -74,23 +94,36 @@ jobs:
|
||||
file: '/home/circleci/repo/platform/core/coverage/reports'
|
||||
flags: 'core'
|
||||
|
||||
###
|
||||
# Workflow: DEPLOY
|
||||
###
|
||||
BUILD:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
steps:
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout
|
||||
- install_bun
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: bun install --no-save
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache ## Cache yarn and Cypress
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# Build & Test
|
||||
- run:
|
||||
name: 'Perform the versioning before build'
|
||||
command: bun ./version.mjs
|
||||
command: node ./version.mjs
|
||||
- run:
|
||||
name: 'Build the OHIF Viewer'
|
||||
command: bun run build
|
||||
command: yarn run build
|
||||
no_output_timeout: 45m
|
||||
- run:
|
||||
name: 'Upload SourceMaps, Send Deploy Notification'
|
||||
@@ -112,18 +145,30 @@ jobs:
|
||||
- commit.txt
|
||||
- version.json
|
||||
|
||||
# just to make sure later on we can publish them
|
||||
BUILD_PACKAGES_QUICK:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
steps:
|
||||
- install_bun
|
||||
- run: yarn -v
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
# Use increasingly general patterns to restore cache
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: bun install --frozen-lockfile
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache/yarn
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- run:
|
||||
name: Avoid hosts unknown for github
|
||||
command: |
|
||||
@@ -138,24 +183,38 @@ jobs:
|
||||
- run:
|
||||
name: build half of the packages (to avoid out of memory in circleci)
|
||||
command: |
|
||||
bun run build:package-all
|
||||
yarn run build:package-all
|
||||
- run:
|
||||
name: build the other half of the packages
|
||||
command: |
|
||||
bun run build:package-all-1
|
||||
yarn run build:package-all-1
|
||||
|
||||
###
|
||||
# Workflow: RELEASE
|
||||
###
|
||||
NPM_PUBLISH:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
steps:
|
||||
- install_bun
|
||||
- run: yarn -v
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
# Use increasingly general patterns to restore cache
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: bun install --no-save
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache/yarn
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- run:
|
||||
name: Avoid hosts unknown for github
|
||||
command: |
|
||||
@@ -170,11 +229,11 @@ jobs:
|
||||
- run:
|
||||
name: build half of the packages (to avoid out of memory in circleci)
|
||||
command: |
|
||||
bun run build:package-all
|
||||
yarn run build:package-all
|
||||
- run:
|
||||
name: build the other half of the packages
|
||||
command: |
|
||||
bun run build:package-all-1
|
||||
yarn run build:package-all-1
|
||||
- run:
|
||||
name: increase min time out
|
||||
command: |
|
||||
@@ -186,14 +245,14 @@ jobs:
|
||||
- run:
|
||||
name: publish package versions
|
||||
command: |
|
||||
bun ./publish-version.mjs
|
||||
node ./publish-version.mjs
|
||||
- run:
|
||||
name: Again set the NPM registry (was deleted in the version script)
|
||||
command: echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
|
||||
- run:
|
||||
name: publish package dist
|
||||
command: |
|
||||
bun ./publish-package.mjs
|
||||
node ./publish-package.mjs
|
||||
- persist_to_workspace:
|
||||
root: ~/repo
|
||||
paths:
|
||||
@@ -208,7 +267,7 @@ jobs:
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Build Docker image for amd64
|
||||
name: Build and push Docker image from the release branch
|
||||
command: |
|
||||
# This file will exist if a new version was published by
|
||||
# our command in the previous job.
|
||||
@@ -222,50 +281,12 @@ jobs:
|
||||
export IMAGE_VERSION_FULL=v$IMAGE_VERSION
|
||||
echo $IMAGE_VERSION
|
||||
echo $IMAGE_VERSION_FULL
|
||||
# Build our amd64 image, auth, and push
|
||||
docker build --platform linux/amd64 --tag ohif/app:$IMAGE_VERSION_FULL-amd64 --tag ohif/app:latest-amd64 .
|
||||
# Build our image, auth, and push
|
||||
docker build --tag ohif/app:$IMAGE_VERSION_FULL --tag ohif/app:latest .
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
docker push ohif/app:$IMAGE_VERSION_FULL-amd64
|
||||
docker push ohif/app:latest-amd64
|
||||
docker push ohif/app:$IMAGE_VERSION_FULL
|
||||
docker push ohif/app:latest
|
||||
fi
|
||||
- persist_to_workspace:
|
||||
root: ~/repo
|
||||
paths:
|
||||
- .
|
||||
|
||||
DOCKER_RELEASE_PUBLISH_ARM:
|
||||
<<: *defaults
|
||||
resource_class: arm.large
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Build Docker image for arm64 (Release)
|
||||
command: |
|
||||
# This file will exist if a new version was published by
|
||||
# our command in the previous job.
|
||||
if [[ ! -e version.txt ]]; then
|
||||
exit 0
|
||||
else
|
||||
# Remove npm config
|
||||
rm -f ./.npmrc
|
||||
# Set our version number using vars
|
||||
export IMAGE_VERSION=$(cat version.txt)
|
||||
export IMAGE_VERSION_FULL=v$IMAGE_VERSION
|
||||
echo $IMAGE_VERSION
|
||||
echo $IMAGE_VERSION_FULL
|
||||
# Build our arm64 image, auth, and push
|
||||
docker build --platform linux/arm64 --tag ohif/app:$IMAGE_VERSION_FULL-arm64 --tag ohif/app:latest-arm64 .
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
docker push ohif/app:$IMAGE_VERSION_FULL-arm64
|
||||
docker push ohif/app:latest-arm64
|
||||
fi
|
||||
- persist_to_workspace:
|
||||
root: ~/repo
|
||||
paths:
|
||||
- .
|
||||
|
||||
DOCKER_BETA_PUBLISH:
|
||||
<<: *defaults
|
||||
@@ -276,7 +297,7 @@ jobs:
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Build Docker image for amd64 (Beta)
|
||||
name: Build and push Docker image from the master branch (beta releases)
|
||||
command: |
|
||||
echo $(ls -l)
|
||||
|
||||
@@ -288,153 +309,108 @@ jobs:
|
||||
else
|
||||
echo "Building and pushing Docker image from the master branch (beta releases)"
|
||||
rm -f ./.npmrc
|
||||
|
||||
# Set our version number using vars
|
||||
export IMAGE_VERSION=$(cat version.txt)
|
||||
export IMAGE_VERSION_FULL=v$IMAGE_VERSION
|
||||
echo $IMAGE_VERSION
|
||||
echo $IMAGE_VERSION_FULL
|
||||
# Build our amd64 image, auth, and push
|
||||
docker build --platform linux/amd64 --tag ohif/app:$IMAGE_VERSION_FULL-amd64 --tag ohif/app:latest-beta-amd64 .
|
||||
# Build our image, auth, and push
|
||||
|
||||
echo "starting docker build"
|
||||
docker build --tag ohif/app:$IMAGE_VERSION_FULL .
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
docker push ohif/app:$IMAGE_VERSION_FULL-amd64
|
||||
docker push ohif/app:latest-beta-amd64
|
||||
|
||||
echo "starting docker push"
|
||||
docker push ohif/app:$IMAGE_VERSION_FULL
|
||||
fi
|
||||
|
||||
DOCKER_BETA_PUBLISH_ARM:
|
||||
<<: *defaults
|
||||
resource_class: arm.large
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Build Docker image for arm64 (Beta)
|
||||
command: |
|
||||
echo $(ls -l)
|
||||
|
||||
# This file will exist if a new version was published by
|
||||
# our command in the previous job.
|
||||
if [[ ! -e version.txt ]]; then
|
||||
echo "don't have version txt"
|
||||
exit 0
|
||||
else
|
||||
echo "Building and pushing ARM64 Docker image from the master branch (beta releases)"
|
||||
rm -f ./.npmrc
|
||||
# Set our version number using vars
|
||||
export IMAGE_VERSION=$(cat version.txt)
|
||||
export IMAGE_VERSION_FULL=v$IMAGE_VERSION
|
||||
echo $IMAGE_VERSION
|
||||
echo $IMAGE_VERSION_FULL
|
||||
# Build our arm64 image, auth, and push
|
||||
docker build --platform linux/arm64 --tag ohif/app:$IMAGE_VERSION_FULL-arm64 --tag ohif/app:latest-beta-arm64 .
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
docker push ohif/app:$IMAGE_VERSION_FULL-arm64
|
||||
docker push ohif/app:latest-beta-arm64
|
||||
fi
|
||||
|
||||
CYPRESS:
|
||||
<<: *defaults
|
||||
# This is copied from the Cypress orb since the default for cypress/run is node 16 and
|
||||
# we migrated to 18
|
||||
CYPRESS_CUSTOM_RUN:
|
||||
description: |
|
||||
A single, complete job to run Cypress end-to-end tests in your application.
|
||||
executor: cypress-custom
|
||||
parallelism: << parameters.parallelism >>
|
||||
parameters:
|
||||
cypress-cache-key:
|
||||
default: cypress-cache-{{ arch }}-{{ checksum "package.json" }}
|
||||
description: Cache key used to cache the Cypress binary.
|
||||
type: string
|
||||
cypress-cache-path:
|
||||
default: ~/.cache/Cypress
|
||||
description: |
|
||||
By default, this will cache the '~/.cache/Cypress' directory so that the Cypress binary is cached. You can override this by providing your own cache path.
|
||||
type: string
|
||||
cypress-command:
|
||||
default: npx cypress run
|
||||
description: Command used to run your Cypress tests
|
||||
type: string
|
||||
include-branch-in-node-cache-key:
|
||||
default: false
|
||||
description: |
|
||||
If true, this cache will only apply to runs within the same branch. (Adds -{{ .Branch }}- to the node cache key)
|
||||
type: boolean
|
||||
install-browsers:
|
||||
default: false
|
||||
description: |
|
||||
Cypress runs by default in the Electron browser. Use this flag to install additional browsers to run your tests in.
|
||||
This is only needed if you are passing the `--browser` flag in your `cypress-command`.
|
||||
This parameter leverages the `circleci/browser-tools` orb and includes Chrome and FireFox.
|
||||
If you need additional browser support you can set this to false and use an executor with a docker image
|
||||
that includes the browsers of your choosing. See https://hub.docker.com/r/cypress/browsers/tags
|
||||
type: boolean
|
||||
install-command:
|
||||
default: ''
|
||||
description: Overrides the default NPM command (npm ci)
|
||||
type: string
|
||||
node-cache-version:
|
||||
default: v1
|
||||
description:
|
||||
Change the default node cache version if you need to clear the cache for any reason.
|
||||
type: string
|
||||
package-manager:
|
||||
default: npm
|
||||
description: Select the default node package manager to use. NPM v5+ Required.
|
||||
enum:
|
||||
- npm
|
||||
- yarn
|
||||
- yarn-berry
|
||||
type: enum
|
||||
parallelism:
|
||||
default: 4
|
||||
description: |
|
||||
Number of Circle machines to use for load balancing, min 1
|
||||
(requires `parallel` and `record` flags in your `cypress-command`)
|
||||
type: integer
|
||||
post-install:
|
||||
default: ''
|
||||
description: |
|
||||
Additional commands to run after running install but before verifying Cypress and saving cache.
|
||||
type: string
|
||||
start-command:
|
||||
default: ''
|
||||
description: Command used to start your local dev server for Cypress to tests against
|
||||
type: string
|
||||
working-directory:
|
||||
default: ''
|
||||
description: Directory containing package.json
|
||||
type: string
|
||||
resource_class: large
|
||||
parallelism: 8
|
||||
steps:
|
||||
- run:
|
||||
name: Install System Dependencies
|
||||
command: |
|
||||
sudo apt-get update
|
||||
sudo apt-get install -y xvfb libgtk2.0-0 libgtk-3-0 libgbm-dev libnotify-dev libgconf-2-4 libnss3 libxss1 libasound2 libxtst6
|
||||
- run:
|
||||
name: Start Xvfb
|
||||
command: Xvfb :99 -screen 0 1920x1080x24 &
|
||||
background: true
|
||||
- run:
|
||||
name: Export Display Variable
|
||||
command: export DISPLAY=:99
|
||||
- cypress/install:
|
||||
install-command: yarn install --no-save
|
||||
cypress-cache-key: << parameters.cypress-cache-key >>
|
||||
cypress-cache-path: << parameters.cypress-cache-path >>
|
||||
include-branch-in-node-cache-key: << parameters.include-branch-in-node-cache-key >>
|
||||
install-browsers: << parameters.install-browsers >>
|
||||
install-command: << parameters.install-command >>
|
||||
node-cache-version: << parameters.node-cache-version >>
|
||||
package-manager: << parameters.package-manager >>
|
||||
post-install: << parameters.post-install >>
|
||||
working-directory: << parameters.working-directory >>
|
||||
- cypress/run-tests:
|
||||
cypress-command: |
|
||||
npx wait-on@latest http://localhost:3000 && cd platform/app && npx cypress run --record --parallel
|
||||
start-command: yarn run test:data && yarn run test:e2e:serve
|
||||
|
||||
DOCKER_MULTIARCH_MANIFEST:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Create and push multi-architecture manifest (Release)
|
||||
command: |
|
||||
# This file will exist if a new version was published by
|
||||
# our command in the previous job.
|
||||
if [[ ! -e version.txt ]]; then
|
||||
exit 0
|
||||
else
|
||||
echo "Building and pushing multi-architecture manifest from the master branch (release releases)"
|
||||
rm -f ./.npmrc
|
||||
# Set our version number using vars
|
||||
export IMAGE_VERSION=$(cat version.txt)
|
||||
export IMAGE_VERSION_FULL=v$IMAGE_VERSION
|
||||
echo $IMAGE_VERSION
|
||||
echo $IMAGE_VERSION_FULL
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
|
||||
# Create and push manifest for specific version
|
||||
docker manifest create ohif/app:$IMAGE_VERSION_FULL \
|
||||
--amend ohif/app:$IMAGE_VERSION_FULL-amd64 \
|
||||
--amend ohif/app:$IMAGE_VERSION_FULL-arm64
|
||||
docker manifest push ohif/app:$IMAGE_VERSION_FULL
|
||||
|
||||
# Create and push manifest for "latest" tag
|
||||
docker manifest create ohif/app:latest \
|
||||
--amend ohif/app:latest-amd64 \
|
||||
--amend ohif/app:latest-arm64
|
||||
docker manifest push ohif/app:latest
|
||||
fi
|
||||
|
||||
DOCKER_BETA_MULTIARCH_MANIFEST:
|
||||
<<: *defaults
|
||||
resource_class: large
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Create and push multi-architecture manifest (Beta)
|
||||
command: |
|
||||
echo $(ls -l)
|
||||
|
||||
# This file will exist if a new version was published by
|
||||
# our command in the previous job.
|
||||
if [[ ! -e version.txt ]]; then
|
||||
exit 0
|
||||
else
|
||||
echo "Building and pushing multi-architecture manifest from the master branch (beta releases)"
|
||||
rm -f ./.npmrc
|
||||
# Set our version number using vars
|
||||
export IMAGE_VERSION=$(cat version.txt)
|
||||
export IMAGE_VERSION_FULL=v$IMAGE_VERSION
|
||||
echo $IMAGE_VERSION
|
||||
echo $IMAGE_VERSION_FULL
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
|
||||
# Create and push manifest for specific beta version
|
||||
docker manifest create ohif/app:$IMAGE_VERSION_FULL \
|
||||
--amend ohif/app:$IMAGE_VERSION_FULL-amd64 \
|
||||
--amend ohif/app:$IMAGE_VERSION_FULL-arm64
|
||||
docker manifest push ohif/app:$IMAGE_VERSION_FULL
|
||||
|
||||
# Create and push manifest for "latest-beta" tag
|
||||
docker manifest create ohif/app:latest-beta \
|
||||
--amend ohif/app:latest-beta-amd64 \
|
||||
--amend ohif/app:latest-beta-arm64
|
||||
docker manifest push ohif/app:latest-beta
|
||||
fi
|
||||
cypress-command: << parameters.cypress-command >>
|
||||
start-command: << parameters.start-command >>
|
||||
working-directory: << parameters.working-directory >>
|
||||
|
||||
workflows:
|
||||
PR_CHECKS:
|
||||
@@ -443,12 +419,61 @@ workflows:
|
||||
filters:
|
||||
branches:
|
||||
ignore: master
|
||||
- UNIT_TESTS
|
||||
- CYPRESS:
|
||||
- UNIT_TESTS:
|
||||
requires:
|
||||
- BUILD_PACKAGES_QUICK
|
||||
- CYPRESS_CUSTOM_RUN:
|
||||
name: 'Cypress Tests'
|
||||
context: cypress
|
||||
matrix:
|
||||
parameters:
|
||||
start-command:
|
||||
- yarn run test:data && yarn run test:e2e:serve
|
||||
install-browsers:
|
||||
- true
|
||||
cypress-command:
|
||||
- 'npx wait-on@latest http://localhost:3000 && cd platform/app && npx cypress run
|
||||
--record --browser chrome --parallel'
|
||||
package-manager:
|
||||
- 'yarn'
|
||||
cypress-cache-key:
|
||||
- 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
cypress-cache-path:
|
||||
- '~/.cache/Cypress'
|
||||
requires:
|
||||
- BUILD_PACKAGES_QUICK
|
||||
|
||||
# viewer-dev.ohif.org
|
||||
# PR_OPTIONAL_VISUAL_TESTS:
|
||||
# jobs:
|
||||
# - AWAIT_APPROVAL:
|
||||
# type: approval
|
||||
# # Update hub.docker.org
|
||||
# - cypress/run:
|
||||
# name: 'Generate Percy Snapshots'
|
||||
# executor: cypress/browsers-chrome76
|
||||
# browser: chrome
|
||||
# pre-steps:
|
||||
# - run: 'rm -rf ~/.yarn && yarn -v && yarn global add wait-on'
|
||||
# yarn: true
|
||||
# store_artifacts: false
|
||||
# working_directory: platform/app
|
||||
# build:
|
||||
# yarn test:data && npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
# yarn run build
|
||||
# # start server --> verify running --> percy + chrome + cypress
|
||||
# command: yarn run test:e2e:dist
|
||||
# cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
# no-workspace: true # Don't persist workspace
|
||||
# post-steps:
|
||||
# - store_artifacts:
|
||||
# path: platform/app/cypress/screenshots
|
||||
# - store_artifacts:
|
||||
# path: platform/app/cypress/videos
|
||||
# requires:
|
||||
# - AWAIT_APPROVAL
|
||||
|
||||
# Our master branch deploys to viewer-dev.ohif.org, the viewer.ohif.org is
|
||||
# deployed from the release branch which is more stable and less frequently updated.
|
||||
DEPLOY_MASTER:
|
||||
jobs:
|
||||
- BUILD:
|
||||
@@ -461,14 +486,9 @@ workflows:
|
||||
- DOCKER_BETA_PUBLISH:
|
||||
requires:
|
||||
- NPM_PUBLISH
|
||||
- DOCKER_BETA_PUBLISH_ARM:
|
||||
requires:
|
||||
- DOCKER_BETA_PUBLISH
|
||||
- DOCKER_BETA_MULTIARCH_MANIFEST:
|
||||
requires:
|
||||
- DOCKER_BETA_PUBLISH_ARM
|
||||
|
||||
# viewer.ohif.org
|
||||
# Our release branch deploys to viewer.ohif.org and is more stable and less
|
||||
# frequently updated after being tested in the staging environment.
|
||||
DEPLOY_RELEASE:
|
||||
jobs:
|
||||
- BUILD:
|
||||
@@ -485,9 +505,50 @@ workflows:
|
||||
- DOCKER_RELEASE_PUBLISH:
|
||||
requires:
|
||||
- NPM_PUBLISH
|
||||
- DOCKER_RELEASE_PUBLISH_ARM:
|
||||
requires:
|
||||
- DOCKER_RELEASE_PUBLISH
|
||||
- DOCKER_MULTIARCH_MANIFEST:
|
||||
requires:
|
||||
- DOCKER_RELEASE_PUBLISH_ARM
|
||||
|
||||
###
|
||||
# Unit and E2E tests have already run for PR_CHECKS
|
||||
# Re-running should not gain us any confidence here
|
||||
###
|
||||
# RELEASE:
|
||||
# jobs:
|
||||
# - NPM_PUBLISH:
|
||||
# filters:
|
||||
# branches:
|
||||
# only: master
|
||||
# - DOCS_PUBLISH:
|
||||
# filters:
|
||||
# branches:
|
||||
# only: master
|
||||
# # Update base branch snapshots
|
||||
# # and record a Cypress dashboard test run
|
||||
# - cypress/run:
|
||||
# name: 'Generate Percy Snapshots'
|
||||
# executor: cypress/browsers-chrome76
|
||||
# browser: chrome
|
||||
# pre-steps:
|
||||
# - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
|
||||
# add wait-on' # Use yarn latest
|
||||
# yarn: true
|
||||
# store_artifacts: false
|
||||
# working_directory: platform/app
|
||||
# build:
|
||||
# npx cross-env QUICK_BUILD=true APP_CONFIG=config/e2e.js yarn run
|
||||
# build
|
||||
# # start server --> verify running --> percy + chrome + cypress
|
||||
# command: yarn run test:e2e:dist
|
||||
# cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
# no-workspace: true # Don't persist workspace
|
||||
# post-steps:
|
||||
# - store_artifacts:
|
||||
# path: platform/app/cypress/screenshots
|
||||
# - store_artifacts:
|
||||
# path: platform/app/cypress/videos
|
||||
# - store_test_results:
|
||||
# path: platform/app/cypress/results
|
||||
# filters:
|
||||
# branches:
|
||||
# only: master
|
||||
# - DOCKER_MASTER_PUBLISH:
|
||||
# requires:
|
||||
# - NPM_PUBLISH
|
||||
@@ -1,13 +1,10 @@
|
||||
server {
|
||||
gzip_static always;
|
||||
gzip_proxied expired no-cache no-store private auth;
|
||||
gunzip on;
|
||||
listen ${PORT} default_server;
|
||||
listen [::]:${PORT} default_server;
|
||||
location / {
|
||||
root /usr/share/nginx/html;
|
||||
index index.html index.htm;
|
||||
try_files $uri $uri/ ${PUBLIC_URL}index.html;
|
||||
try_files $uri $uri/ /index.html;
|
||||
add_header Cross-Origin-Resource-Policy same-origin;
|
||||
proxy_set_header Host $host;
|
||||
proxy_set_header X-Real-IP $remote_addr;
|
||||
|
||||
@@ -2,34 +2,16 @@
|
||||
|
||||
if [ -n "$SSL_PORT" ]
|
||||
then
|
||||
envsubst '${SSL_PORT}:${PORT}' < /usr/src/default.ssl.conf.template | envsubst '${PUBLIC_URL}' > /etc/nginx/conf.d/default.conf
|
||||
envsubst '${SSL_PORT}:${PORT}' < /usr/src/default.ssl.conf.template > /etc/nginx/conf.d/default.conf
|
||||
else
|
||||
envsubst '${PORT}:${PUBLIC_URL}' < /usr/src/default.conf.template > /etc/nginx/conf.d/default.conf
|
||||
envsubst '${PORT}' < /usr/src/default.conf.template > /etc/nginx/conf.d/default.conf
|
||||
fi
|
||||
|
||||
if [ -n "$APP_CONFIG" ]; then
|
||||
echo "$APP_CONFIG" > /usr/share/nginx/html${PUBLIC_URL}app-config.js
|
||||
echo "Using custom APP_CONFIG environment variable"
|
||||
else
|
||||
echo "Not using custom APP_CONFIG"
|
||||
if [ -n "$APP_CONFIG" ]
|
||||
then
|
||||
echo "$APP_CONFIG" > /usr/share/nginx/html/app-config.js
|
||||
fi
|
||||
|
||||
if [ -f /usr/share/nginx/html${PUBLIC_URL}app-config.js ]; then
|
||||
if [ -s /usr/share/nginx/html${PUBLIC_URL}app-config.js ]; then
|
||||
echo "Detected non-empty app-config.js. Ensuring .gz file is updated..."
|
||||
rm -f /usr/share/nginx/html${PUBLIC_URL}app-config.js.gz
|
||||
gzip /usr/share/nginx/html${PUBLIC_URL}app-config.js
|
||||
touch /usr/share/nginx/html${PUBLIC_URL}app-config.js
|
||||
echo "Compressed app-config.js to app-config.js.gz"
|
||||
else
|
||||
echo "app-config.js is empty. Skipping compression."
|
||||
fi
|
||||
else
|
||||
echo "No app-config.js file found. Skipping compression."
|
||||
fi
|
||||
|
||||
|
||||
|
||||
if [ -n "$CLIENT_ID" ] || [ -n "$HEALTHCARE_API_ENDPOINT" ]
|
||||
then
|
||||
# If CLIENT_ID is specified, use the google.js configuration with the modified ID
|
||||
@@ -58,6 +40,6 @@ if [ -n "$CLIENT_ID" ] || [ -n "$HEALTHCARE_API_ENDPOINT" ]
|
||||
cp /usr/share/nginx/html/google.js /usr/share/nginx/html/app-config.js
|
||||
fi
|
||||
|
||||
echo "Starting Nginx to serve the OHIF Viewer on ${PUBLIC_URL}"
|
||||
echo "Starting Nginx to serve the OHIF Viewer..."
|
||||
|
||||
exec "$@"
|
||||
@@ -1,4 +0,0 @@
|
||||
find platform/app/dist -name "*.js" -exec gzip -9 "{}" \; -exec touch "{}" \;
|
||||
find platform/app/dist -name "*.map" -exec gzip -9 "{}" \; -exec touch "{}" \;
|
||||
find platform/app/dist -name "*.css" -exec gzip -9 "{}" \; -exec touch "{}" \;
|
||||
find platform/app/dist -name "*.svg" -exec gzip -9 "{}" \; -exec touch "{}" \;
|
||||
+4
-4
@@ -8,11 +8,11 @@
|
||||
# have this file as their .dockerignore.
|
||||
|
||||
# Output
|
||||
**/dist/
|
||||
**/build/
|
||||
dist/
|
||||
build/
|
||||
|
||||
# Dependencies
|
||||
**/node_modules/
|
||||
node_modules/
|
||||
|
||||
# Root
|
||||
README.md
|
||||
@@ -33,5 +33,5 @@ dockerfile
|
||||
.scripts/
|
||||
.vscode/
|
||||
coverage/
|
||||
platform/docs/
|
||||
docs/
|
||||
testdata/
|
||||
+1
-2
@@ -18,8 +18,7 @@
|
||||
},
|
||||
"rules": {
|
||||
// Enforce consistent brace style for all control statements for readability
|
||||
"curly": "error",
|
||||
"import/no-anonymous-default-export": "off"
|
||||
"curly": "error"
|
||||
},
|
||||
"globals": {
|
||||
"cy": true,
|
||||
|
||||
@@ -1,19 +0,0 @@
|
||||
version: 2
|
||||
enable-beta-ecosystems: true
|
||||
updates:
|
||||
- package-ecosystem: 'bun'
|
||||
directory: '/'
|
||||
schedule:
|
||||
interval: 'daily'
|
||||
labels: ['dependencies']
|
||||
commit-message:
|
||||
prefix: 'chore'
|
||||
include: 'scope'
|
||||
- package-ecosystem: 'npm'
|
||||
directory: '/'
|
||||
schedule:
|
||||
interval: 'daily'
|
||||
labels: ['dependencies']
|
||||
commit-message:
|
||||
prefix: 'chore'
|
||||
include: 'scope'
|
||||
@@ -64,7 +64,7 @@ body:
|
||||
attributes:
|
||||
label: 'Node version'
|
||||
description: 'Your Node.js version.'
|
||||
placeholder: 'e.g., 20.18.1'
|
||||
placeholder: 'e.g., 18.16.1'
|
||||
validations:
|
||||
required: true
|
||||
- type: input
|
||||
|
||||
@@ -1,108 +0,0 @@
|
||||
name: Build and Deploy Docs
|
||||
|
||||
on:
|
||||
push:
|
||||
branches: [master]
|
||||
|
||||
env:
|
||||
ACTIONS_STEP_DEBUG: true
|
||||
|
||||
concurrency:
|
||||
group: ${{ github.workflow }}-${{ github.ref }}
|
||||
cancel-in-progress: true
|
||||
|
||||
jobs:
|
||||
build-and-deploy-docs:
|
||||
timeout-minutes: 60
|
||||
runs-on: ubuntu-latest
|
||||
# Need permissions to read actions and pull requests
|
||||
permissions:
|
||||
actions: read
|
||||
contents: read
|
||||
pull-requests: read
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: oven-sh/setup-bun@v2
|
||||
- uses: actions/setup-node@v4
|
||||
with:
|
||||
node-version: 20 # Or your desired Node version
|
||||
|
||||
- name: Install root dependencies
|
||||
run: bun install --frozen-lockfile
|
||||
|
||||
# Removed Playwright tests and coverage generation steps
|
||||
|
||||
- name: Find PR and associated workflow run
|
||||
id: find_pr_run
|
||||
env:
|
||||
GH_TOKEN: ${{ github.token }}
|
||||
MERGE_COMMIT_SHA: ${{ github.sha }}
|
||||
run: |
|
||||
# Find the PR associated with the merge commit SHA
|
||||
# Note: This relies on the merge commit being directly pushed to main
|
||||
PR_DATA=$(gh pr list --state merged --search "$MERGE_COMMIT_SHA" --json number,headRefOid --jq '.[0]')
|
||||
if [ -z "$PR_DATA" ]; then
|
||||
echo "Could not find merged PR for commit $MERGE_COMMIT_SHA."
|
||||
# Decide how to handle - fail, or maybe generate coverage now?
|
||||
# For now, let's fail.
|
||||
exit 1
|
||||
fi
|
||||
PR_HEAD_SHA=$(echo "$PR_DATA" | jq -r '.headRefOid')
|
||||
PR_NUMBER=$(echo "$PR_DATA" | jq -r '.number')
|
||||
echo "Found PR Number: $PR_NUMBER"
|
||||
echo "Found PR Head SHA: $PR_HEAD_SHA"
|
||||
|
||||
# Find the latest workflow run ID for the playwright workflow on the PR head commit
|
||||
# Uses the workflow file name 'playwright.yml'
|
||||
# Remove the --status success flag to find any run
|
||||
RUN_ID=$(gh run list --workflow playwright.yml --commit "$PR_HEAD_SHA" --event pull_request --json databaseId --jq '.[0].databaseId')
|
||||
|
||||
if [ -z "$RUN_ID" ]; then
|
||||
echo "Could not find any 'playwright.yml' run for PR $PR_NUMBER (Head SHA: $PR_HEAD_SHA)."
|
||||
# Decide how to handle - maybe try finding the artifact from the merge commit run if that exists?
|
||||
# For now, let's fail.
|
||||
exit 1
|
||||
fi
|
||||
echo "Found Run ID: $RUN_ID"
|
||||
echo "run_id=$RUN_ID" >> $GITHUB_OUTPUT
|
||||
|
||||
- name: Download coverage artifact from PR run
|
||||
env:
|
||||
GH_TOKEN: ${{ github.token }}
|
||||
run: |
|
||||
mkdir -p ./coverage-artifact
|
||||
gh run download ${{ steps.find_pr_run.outputs.run_id }} -n coverage-report-pr --dir ./coverage-artifact
|
||||
# Check if download was successful (e.g., check if files exist)
|
||||
if [ ! -f ./coverage-artifact/base.css ]; then
|
||||
echo "Failed to download or find expected files in artifact 'coverage-report-pr' from run ${{ steps.find_pr_run.outputs.run_id }}."
|
||||
exit 1
|
||||
fi
|
||||
echo "Artifact downloaded successfully."
|
||||
|
||||
- name: Install docs dependencies
|
||||
run: cd platform/docs && bun install
|
||||
|
||||
- name: Copy coverage to docs static directory
|
||||
run: |
|
||||
# Copy files from the downloaded artifact directory
|
||||
mkdir -p platform/docs/static/coverage
|
||||
cp -r ./coverage-artifact/* platform/docs/static/coverage/
|
||||
# Copy specific asset files from the downloaded artifact root to static root
|
||||
cp ./coverage-artifact/base.css platform/docs/static/
|
||||
cp ./coverage-artifact/block-navigation.js platform/docs/static/
|
||||
cp ./coverage-artifact/prettify.css platform/docs/static/
|
||||
cp ./coverage-artifact/prettify.js platform/docs/static/
|
||||
cp ./coverage-artifact/favicon.png platform/docs/static/
|
||||
cp ./coverage-artifact/sort-arrow-sprite.png platform/docs/static/
|
||||
cp ./coverage-artifact/sorter.js platform/docs/static/
|
||||
|
||||
- name: Build docs
|
||||
run: cd platform/docs && bun run build
|
||||
|
||||
- name: Deploy to Netlify
|
||||
run: |
|
||||
cd platform/docs
|
||||
npx netlify-cli deploy --dir=./build --prod
|
||||
env:
|
||||
NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
|
||||
NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
|
||||
@@ -1,98 +0,0 @@
|
||||
# For most projects, this workflow file will not need changing; you simply need
|
||||
# to commit it to your repository.
|
||||
#
|
||||
# You may wish to alter this file to override the set of languages analyzed,
|
||||
# or to provide custom queries or build logic.
|
||||
#
|
||||
# ******** NOTE ********
|
||||
# We have attempted to detect the languages in your repository. Please check
|
||||
# the `language` matrix defined below to confirm you have the correct set of
|
||||
# supported CodeQL languages.
|
||||
#
|
||||
name: "CodeQL Advanced"
|
||||
|
||||
on:
|
||||
pull_request:
|
||||
branches: [ "main" ]
|
||||
schedule:
|
||||
- cron: '15 1 * * 5'
|
||||
|
||||
jobs:
|
||||
analyze:
|
||||
name: Analyze (${{ matrix.language }})
|
||||
# Runner size impacts CodeQL analysis time. To learn more, please see:
|
||||
# - https://gh.io/recommended-hardware-resources-for-running-codeql
|
||||
# - https://gh.io/supported-runners-and-hardware-resources
|
||||
# - https://gh.io/using-larger-runners (GitHub.com only)
|
||||
# Consider using larger runners or machines with greater resources for possible analysis time improvements.
|
||||
runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
|
||||
permissions:
|
||||
# required for all workflows
|
||||
security-events: write
|
||||
|
||||
# required to fetch internal or private CodeQL packs
|
||||
packages: read
|
||||
|
||||
# only required for workflows in private repositories
|
||||
actions: read
|
||||
contents: read
|
||||
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
include:
|
||||
- language: actions
|
||||
build-mode: none
|
||||
- language: javascript-typescript
|
||||
build-mode: none
|
||||
# CodeQL supports the following values keywords for 'language': 'actions', 'c-cpp', 'csharp', 'go', 'java-kotlin', 'javascript-typescript', 'python', 'ruby', 'swift'
|
||||
# Use `c-cpp` to analyze code written in C, C++ or both
|
||||
# Use 'java-kotlin' to analyze code written in Java, Kotlin or both
|
||||
# Use 'javascript-typescript' to analyze code written in JavaScript, TypeScript or both
|
||||
# To learn more about changing the languages that are analyzed or customizing the build mode for your analysis,
|
||||
# see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/customizing-your-advanced-setup-for-code-scanning.
|
||||
# If you are analyzing a compiled language, you can modify the 'build-mode' for that language to customize how
|
||||
# your codebase is analyzed, see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages
|
||||
steps:
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v4
|
||||
|
||||
# Add any setup steps before running the `github/codeql-action/init` action.
|
||||
# This includes steps like installing compilers or runtimes (`actions/setup-node`
|
||||
# or others). This is typically only required for manual builds.
|
||||
# - name: Setup runtime (example)
|
||||
# uses: actions/setup-example@v1
|
||||
|
||||
# Initializes the CodeQL tools for scanning.
|
||||
- name: Initialize CodeQL
|
||||
uses: github/codeql-action/init@v3
|
||||
with:
|
||||
languages: ${{ matrix.language }}
|
||||
build-mode: ${{ matrix.build-mode }}
|
||||
# If you wish to specify custom queries, you can do so here or in a config file.
|
||||
# By default, queries listed here will override any specified in a config file.
|
||||
# Prefix the list here with "+" to use these queries and those in the config file.
|
||||
|
||||
# For more details on CodeQL's query packs, refer to: https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
|
||||
# queries: security-extended,security-and-quality
|
||||
|
||||
# If the analyze step fails for one of the languages you are analyzing with
|
||||
# "We were unable to automatically build your code", modify the matrix above
|
||||
# to set the build mode to "manual" for that language. Then modify this step
|
||||
# to build your code.
|
||||
# ℹ️ Command-line programs to run using the OS shell.
|
||||
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
|
||||
- if: matrix.build-mode == 'manual'
|
||||
shell: bash
|
||||
run: |
|
||||
echo 'If you are using a "manual" build mode for one or more of the' \
|
||||
'languages you are analyzing, replace this with the commands to build' \
|
||||
'your code, for example:'
|
||||
echo ' make bootstrap'
|
||||
echo ' make release'
|
||||
exit 1
|
||||
|
||||
- name: Perform CodeQL Analysis
|
||||
uses: github/codeql-action/analyze@v3
|
||||
with:
|
||||
category: "/language:${{matrix.language}}"
|
||||
@@ -1,41 +1,67 @@
|
||||
name: Playwright Tests
|
||||
on:
|
||||
push:
|
||||
branches: [main, master]
|
||||
pull_request:
|
||||
branches: [master]
|
||||
|
||||
concurrency:
|
||||
group: ${{ github.workflow }}-${{ github.ref }}
|
||||
cancel-in-progress: true
|
||||
|
||||
branches: [main, master]
|
||||
jobs:
|
||||
playwright-tests:
|
||||
timeout-minutes: 60
|
||||
runs-on: self-hosted
|
||||
runs-on: ubuntu-latest
|
||||
container:
|
||||
image: mcr.microsoft.com/playwright:v1.49.0-noble
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
node-version: [20]
|
||||
shardIndex: [1, 2, 3, 4, 5]
|
||||
shardTotal: [5]
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: oven-sh/setup-bun@v2
|
||||
- uses: actions/setup-node@v4
|
||||
with:
|
||||
node-version: ${{ matrix.node-version }}
|
||||
node-version: 18
|
||||
- name: Install dependencies
|
||||
run: bun install --frozen-lockfile
|
||||
- name: Install Playwright browsers
|
||||
run: npx playwright install
|
||||
run: yarn install --frozen-lockfile
|
||||
- name: Install Playwright Browsers
|
||||
run: npx playwright install --with-deps
|
||||
- name: Run Playwright tests
|
||||
run: |
|
||||
export NODE_OPTIONS="--max_old_space_size=10192"
|
||||
bun run test:e2e:coverage
|
||||
- name: create the coverage report
|
||||
run: |
|
||||
bun nyc report --reporter=lcov --reporter=text
|
||||
- name: Upload the coverage report to GitHub Actions Artifacts
|
||||
run:
|
||||
export NODE_OPTIONS="--max_old_space_size=8192" && npx playwright test --shard=${{
|
||||
matrix.shardIndex }}/${{ matrix.shardTotal }}
|
||||
|
||||
- name: Upload blob report to GitHub Actions Artifacts
|
||||
if: ${{ !cancelled() }}
|
||||
uses: actions/upload-artifact@v4
|
||||
with:
|
||||
name: coverage-report-pr
|
||||
path: coverage
|
||||
retention-days: 3
|
||||
name: blob-report-${{ matrix.shardIndex }}
|
||||
path: blob-report
|
||||
retention-days: 1
|
||||
|
||||
merge-reports:
|
||||
if: ${{ !cancelled() }}
|
||||
needs: [playwright-tests]
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/setup-node@v4
|
||||
with:
|
||||
node-version: 18
|
||||
- name: Install dependencies
|
||||
run: yarn install --frozen-lockfile
|
||||
|
||||
- name: Download blob reports from GitHub Actions Artifacts
|
||||
uses: actions/download-artifact@v4
|
||||
with:
|
||||
path: all-blob-reports
|
||||
pattern: blob-report-*
|
||||
merge-multiple: true
|
||||
|
||||
- name: Merge into HTML Report
|
||||
run: npx playwright merge-reports --reporter html ./all-blob-reports
|
||||
|
||||
- name: Upload HTML report
|
||||
uses: actions/upload-artifact@v4
|
||||
with:
|
||||
name: html-report--attempt-${{ github.run_attempt }}
|
||||
path: playwright-report
|
||||
retention-days: 14
|
||||
+1
-5
@@ -1,7 +1,6 @@
|
||||
# Packages
|
||||
node_modules
|
||||
.cursor/
|
||||
.nyc_output/
|
||||
|
||||
# Output
|
||||
build
|
||||
dist
|
||||
@@ -13,7 +12,6 @@ coverage/
|
||||
.yarn/
|
||||
.nx/
|
||||
addOns/yarn.lock
|
||||
playwright-report/
|
||||
|
||||
# YALC (for Erik)
|
||||
.yalc
|
||||
@@ -58,5 +56,3 @@ tests/test-results/
|
||||
tests/playwright-report/
|
||||
/blob-report/
|
||||
/playwright/.cache/
|
||||
|
||||
**/.claude/settings.local.json
|
||||
+1
-1
@@ -1 +1 @@
|
||||
20.9.0
|
||||
18.16.1
|
||||
-24
@@ -1,24 +0,0 @@
|
||||
{
|
||||
"extends": "@istanbuljs/nyc-config-typescript",
|
||||
"instrument": true,
|
||||
"sourceMap": true,
|
||||
"cache": false,
|
||||
"all": true,
|
||||
"include": [
|
||||
"platform/*/src/**/*.ts",
|
||||
"platform/*/src/**/*.js",
|
||||
"extensions/*/src/**/*.ts",
|
||||
"extensions/*/src/**/*.js",
|
||||
"modes/*/src/**/*.ts",
|
||||
"modes/*/src/**/*.js"
|
||||
],
|
||||
"exclude": [
|
||||
"**/*.spec.ts",
|
||||
"**/*.test.ts",
|
||||
"**/test/**",
|
||||
"**/tests/**",
|
||||
"**/examples/**",
|
||||
"**/stories/**",
|
||||
"platform/docs/**"
|
||||
]
|
||||
}
|
||||
Vendored
+1
-3
@@ -109,8 +109,6 @@
|
||||
"wado",
|
||||
"wadors",
|
||||
"wadouri",
|
||||
"workerpool",
|
||||
"Colorbar",
|
||||
"Colorbars"
|
||||
"workerpool"
|
||||
]
|
||||
}
|
||||
@@ -26,7 +26,6 @@ const ReactRefreshWebpackPlugin = require('@pmmmwh/react-refresh-webpack-plugin'
|
||||
const NODE_ENV = process.env.NODE_ENV;
|
||||
const QUICK_BUILD = process.env.QUICK_BUILD;
|
||||
const BUILD_NUM = process.env.CIRCLE_BUILD_NUM || '0';
|
||||
const IS_COVERAGE = process.env.COVERAGE === 'true';
|
||||
|
||||
// read from ../version.txt
|
||||
const VERSION_NUMBER = fs.readFileSync(path.join(__dirname, '../version.txt'), 'utf8') || '';
|
||||
@@ -50,7 +49,6 @@ const defineValues = {
|
||||
'process.env.LOCIZE_PROJECTID': JSON.stringify(process.env.LOCIZE_PROJECTID || ''),
|
||||
'process.env.LOCIZE_API_KEY': JSON.stringify(process.env.LOCIZE_API_KEY || ''),
|
||||
'process.env.REACT_APP_I18N_DEBUG': JSON.stringify(process.env.REACT_APP_I18N_DEBUG || ''),
|
||||
'process.env.TEST_ENV': JSON.stringify(process.env.TEST_ENV || ''),
|
||||
};
|
||||
|
||||
// Only redefine updated values. This avoids warning messages in the logs
|
||||
@@ -101,30 +99,14 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
...(isProdBuild
|
||||
? []
|
||||
: [
|
||||
...(IS_COVERAGE
|
||||
? [
|
||||
{
|
||||
test: /\.[jt]sx?$/,
|
||||
exclude: /node_modules/,
|
||||
use: {
|
||||
loader: 'babel-loader',
|
||||
options: {
|
||||
presets: ['@babel/preset-typescript', '@babel/preset-react'],
|
||||
plugins: ['istanbul'],
|
||||
},
|
||||
},
|
||||
},
|
||||
]
|
||||
: [
|
||||
{
|
||||
test: /\.[jt]sx?$/,
|
||||
exclude: /node_modules/,
|
||||
loader: 'babel-loader',
|
||||
options: {
|
||||
plugins: isProdBuild ? [] : ['react-refresh/babel'],
|
||||
},
|
||||
},
|
||||
]),
|
||||
{
|
||||
test: /\.[jt]sx?$/,
|
||||
exclude: /node_modules/,
|
||||
loader: 'babel-loader',
|
||||
options: {
|
||||
plugins: isProdBuild ? [] : ['react-refresh/babel'],
|
||||
},
|
||||
},
|
||||
]),
|
||||
{
|
||||
test: /\.svg?$/,
|
||||
@@ -186,10 +168,6 @@ module.exports = (env, argv, { SRC_DIR, ENTRY }) => {
|
||||
},
|
||||
],
|
||||
},
|
||||
{
|
||||
test: /\.(woff|woff2|eot|ttf|otf)$/i,
|
||||
type: 'asset/resource',
|
||||
},
|
||||
], //.concat(vtkRules),
|
||||
},
|
||||
resolve: {
|
||||
|
||||
+8
-2198
File diff suppressed because it is too large.
Load diff
+32
-57
@@ -1,4 +1,3 @@
|
||||
# syntax=docker/dockerfile:1.7-labs
|
||||
# This dockerfile is used to publish the `ohif/app` image on dockerhub.
|
||||
#
|
||||
# It's a good example of how to build our static application and package it
|
||||
@@ -20,85 +19,61 @@
|
||||
#
|
||||
|
||||
|
||||
# syntax=docker/dockerfile:1.7-labs
|
||||
# This dockerfile is used to publish the `ohif/app` image on dockerhub.
|
||||
#
|
||||
# It's a good example of how to build our static application and package it
|
||||
# with a web server capable of hosting it as static content.
|
||||
#
|
||||
# docker build
|
||||
# --------------
|
||||
# If you would like to use this dockerfile to build and tag an image, make sure
|
||||
# you set the context to the project's root directory:
|
||||
# https://docs.docker.com/engine/reference/commandline/build/
|
||||
#
|
||||
#
|
||||
# SUMMARY
|
||||
# --------------
|
||||
# This dockerfile is used as an input for a second stage to make things run faster.
|
||||
#
|
||||
|
||||
|
||||
# Stage 1: Build the application
|
||||
# docker build -t ohif/viewer:latest .
|
||||
# Copy Files
|
||||
FROM node:20.18.1-slim as builder
|
||||
|
||||
RUN apt-get update && apt-get install -y build-essential python3
|
||||
|
||||
FROM node:18.16.1-slim as json-copier
|
||||
|
||||
RUN mkdir /usr/src/app
|
||||
WORKDIR /usr/src/app
|
||||
RUN npm install -g bun
|
||||
# RUN npm install -g lerna@7.4.2
|
||||
ENV PATH=/usr/src/app/node_modules/.bin:$PATH
|
||||
|
||||
# Do an initial install and then a final install
|
||||
COPY package.json yarn.lock preinstall.js lerna.json ./
|
||||
COPY --parents ./addOns/package.json ./addOns/*/*/package.json ./extensions/*/package.json ./modes/*/package.json ./platform/*/package.json ./
|
||||
COPY ["package.json", "yarn.lock", "preinstall.js", "./"]
|
||||
COPY extensions /usr/src/app/extensions
|
||||
COPY modes /usr/src/app/modes
|
||||
COPY platform /usr/src/app/platform
|
||||
|
||||
# Find and remove non-package.json files
|
||||
#RUN find extensions \! -name "package.json" -mindepth 2 -maxdepth 2 -print | xargs rm -rf
|
||||
#RUN find modes \! -name "package.json" -mindepth 2 -maxdepth 2 -print | xargs rm -rf
|
||||
#RUN find platform \! -name "package.json" -mindepth 2 -maxdepth 2 -print | xargs rm -rf
|
||||
|
||||
# Copy Files
|
||||
FROM node:18.16.1-slim as builder
|
||||
RUN apt-get update && apt-get install -y build-essential python3
|
||||
RUN mkdir /usr/src/app
|
||||
WORKDIR /usr/src/app
|
||||
|
||||
COPY --from=json-copier /usr/src/app .
|
||||
|
||||
# Run the install before copying the rest of the files
|
||||
RUN yarn config set workspaces-experimental true
|
||||
RUN yarn install --frozen-lockfile --verbose
|
||||
|
||||
RUN bun pm cache rm
|
||||
RUN bun install
|
||||
# Copy the local directory
|
||||
COPY --link --exclude=yarn.lock --exclude=package.json --exclude=Dockerfile . .
|
||||
COPY . .
|
||||
|
||||
# Build here
|
||||
# After install it should hopefully be stable until the local directory changes
|
||||
# To restore workspaces symlinks
|
||||
RUN yarn install --frozen-lockfile --verbose
|
||||
|
||||
ENV PATH /usr/src/app/node_modules/.bin:$PATH
|
||||
ENV QUICK_BUILD true
|
||||
# ENV GENERATE_SOURCEMAP=false
|
||||
ARG APP_CONFIG=config/default.js
|
||||
ARG PUBLIC_URL=/
|
||||
ENV PUBLIC_URL=${PUBLIC_URL}
|
||||
# ENV REACT_APP_CONFIG=config/default.js
|
||||
|
||||
RUN bun run show:config
|
||||
RUN bun run build
|
||||
|
||||
# Precompress files
|
||||
RUN chmod u+x .docker/compressDist.sh
|
||||
RUN ./.docker/compressDist.sh
|
||||
RUN yarn run build
|
||||
|
||||
# Stage 3: Bundle the built application into a Docker container
|
||||
# which runs Nginx using Alpine Linux
|
||||
FROM nginxinc/nginx-unprivileged:1.27-alpine as final
|
||||
FROM nginxinc/nginx-unprivileged:1.25-alpine as final
|
||||
#RUN apk add --no-cache bash
|
||||
ARG PUBLIC_URL=/
|
||||
ENV PUBLIC_URL=${PUBLIC_URL}
|
||||
ARG PORT=80
|
||||
ENV PORT=${PORT}
|
||||
ENV PORT=80
|
||||
RUN rm /etc/nginx/conf.d/default.conf
|
||||
USER nginx
|
||||
COPY --chown=nginx:nginx .docker/Viewer-v3.x /usr/src
|
||||
RUN chmod 777 /usr/src/entrypoint.sh
|
||||
COPY --from=builder /usr/src/app/platform/app/dist /usr/share/nginx/html${PUBLIC_URL}
|
||||
# Copy paths that are renamed/redirected generally
|
||||
# Microscopy libraries depend on root level include, so must be copied
|
||||
COPY --from=builder /usr/src/app/platform/app/dist/dicom-microscopy-viewer /usr/share/nginx/html/dicom-microscopy-viewer
|
||||
|
||||
COPY --from=builder /usr/src/app/platform/app/dist /usr/share/nginx/html
|
||||
# In entrypoint.sh, app-config.js might be overwritten, so chmod it to be writeable.
|
||||
# The nginx user cannot chmod it, so change to root.
|
||||
USER root
|
||||
RUN chown -R nginx:nginx /usr/share/nginx/html
|
||||
RUN chmod 666 /usr/share/nginx/html/app-config.js
|
||||
USER nginx
|
||||
ENTRYPOINT ["/usr/src/entrypoint.sh"]
|
||||
CMD ["nginx", "-g", "daemon off;"]
|
||||
@@ -1,4 +1,5 @@
|
||||
<!-- prettier-ignore-start -->
|
||||
<!-- markdownlint-disable -->
|
||||
<div align="center">
|
||||
<h1>OHIF Medical Imaging Viewer</h1>
|
||||
<p><strong>The OHIF Viewer</strong> is a zero-footprint medical image viewer
|
||||
@@ -134,20 +135,18 @@ Here is a schematic representation of our development workflow:
|
||||
|
||||
### Requirements
|
||||
|
||||
- [Yarn 1.20.0+](https://yarnpkg.com/en/docs/install)
|
||||
- [Yarn 1.17.3+](https://yarnpkg.com/en/docs/install)
|
||||
- [Node 18+](https://nodejs.org/en/)
|
||||
- Yarn Workspaces should be enabled on your machine:
|
||||
- `yarn config set workspaces-experimental true`
|
||||
|
||||
### Getting Started
|
||||
|
||||
1. [Fork this repository][how-to-fork]
|
||||
2. [Clone your forked repository][how-to-clone]
|
||||
- `git clone https://github.com/YOUR-USERNAME/Viewers.git`
|
||||
3. Navigate to the cloned project's directory
|
||||
4. Add this repo as a `remote` named `upstream`
|
||||
- `git remote add upstream https://github.com/OHIF/Viewers.git`
|
||||
5. `yarn install` to restore dependencies and link projects
|
||||
1. Clone the repository
|
||||
- `git clone https://github.com/OHIF/Viewers.git`
|
||||
2. Navigate to the cloned project's directory
|
||||
3. `yarn install` to restore dependencies and link projects
|
||||
4. `yarn dev` to start the development server
|
||||
|
||||
#### To Develop
|
||||
|
||||
@@ -167,16 +166,15 @@ These commands are available from the root directory. Each project directory
|
||||
also supports a number of commands that can be found in their respective
|
||||
`README.md` and `package.json` files.
|
||||
|
||||
| Yarn Commands | Description |
|
||||
| Commands | Description |
|
||||
| ---------------------------- | ------------------------------------------------------------- |
|
||||
| **Develop** | |
|
||||
| `dev` | Default development experience for Viewer |
|
||||
| `dev:fast` | Our experimental fast dev mode that uses rsbuild instead of webpack |
|
||||
| `dev` or `start` | Default development experience for Viewer |
|
||||
| `test:unit` | Jest multi-project test runner; overall coverage |
|
||||
| **Deploy** | |
|
||||
| `build`\* | Builds production output for our PWA Viewer | |
|
||||
|
||||
\* - For more information on different builds, check out our [Deploy
|
||||
\* - For more information on our different builds, check out our [Deploy
|
||||
Docs][deployment-docs]
|
||||
|
||||
## Project
|
||||
|
||||
+4
-1699
File diff suppressed because it is too large.
Load diff
+5
-8
@@ -1,7 +1,7 @@
|
||||
{
|
||||
"name": "@externals/devDependencies",
|
||||
"description": "External dev dependencies - put dev build dependencies here",
|
||||
"version": "3.11.0-beta.52",
|
||||
"version": "3.9.2",
|
||||
"license": "MIT",
|
||||
"private": true,
|
||||
"engines": {
|
||||
@@ -10,10 +10,10 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"@kitware/vtk.js": "32.1.1",
|
||||
"clsx": "^2.1.1",
|
||||
"core-js": "^3.2.1",
|
||||
"moment": "^2.30.1"
|
||||
"moment": "^2.9.4"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"react": "^18.3.1",
|
||||
@@ -21,11 +21,7 @@
|
||||
},
|
||||
"devDependencies": {
|
||||
"@pmmmwh/react-refresh-webpack-plugin": "^0.5.15",
|
||||
"@rsbuild/core": "^1.3.16",
|
||||
"@rsbuild/plugin-node-polyfill": "^1.3.0",
|
||||
"@rsbuild/plugin-react": "^1.3.1",
|
||||
"@svgr/webpack": "^8.1.0",
|
||||
"@swc/helpers": "^0.5.15",
|
||||
"@types/jest": "^27.5.0",
|
||||
"@typescript-eslint/eslint-plugin": "^6.3.0",
|
||||
"@typescript-eslint/parser": "^6.3.0",
|
||||
@@ -72,10 +68,11 @@
|
||||
"prettier-plugin-tailwindcss": "^0.5.4",
|
||||
"react-refresh": "^0.14.2",
|
||||
"semver": "^7.5.1",
|
||||
"serve": "^14.2.4",
|
||||
"serve": "^14.2.0",
|
||||
"shader-loader": "^1.3.1",
|
||||
"shx": "^0.3.3",
|
||||
"source-map-loader": "^4.0.1",
|
||||
"start-server-and-test": "^1.10.0",
|
||||
"style-loader": "^1.0.0",
|
||||
"stylus": "^0.59.0",
|
||||
"stylus-loader": "^7.1.3",
|
||||
|
||||
+3
-1683
File diff suppressed because it is too large.
Load diff
+1
-1
@@ -1,7 +1,7 @@
|
||||
{
|
||||
"name": "@externals/dicom-microscopy-viewer",
|
||||
"description": "External reference to dicom-microscopy-viewer",
|
||||
"version": "3.11.0-beta.52",
|
||||
"version": "3.9.2",
|
||||
"license": "MIT",
|
||||
"dependencies": {
|
||||
"dicom-microscopy-viewer": "^0.46.1"
|
||||
|
||||
+1
-1
@@ -38,7 +38,7 @@
|
||||
"resolutions": {
|
||||
"**/@babel/runtime": "^7.20.13",
|
||||
"commander": "8.3.0",
|
||||
"dcmjs": "0.38.0",
|
||||
"dcmjs": ">=0.33.0",
|
||||
"dicomweb-client": ">=0.10.4",
|
||||
"nth-check": "^2.1.1",
|
||||
"trim-newlines": "^5.0.0",
|
||||
|
||||
+3
-1
@@ -1,4 +1,6 @@
|
||||
// https://babeljs.io/docs/en/options#babelrcroots
|
||||
const { extendDefaultPlugins } = require('svgo');
|
||||
|
||||
module.exports = {
|
||||
babelrcRoots: ['./platform/*', './extensions/*', './modes/*'],
|
||||
presets: ['@babel/preset-env', '@babel/preset-react', '@babel/preset-typescript'],
|
||||
@@ -24,7 +26,6 @@ module.exports = {
|
||||
'@babel/preset-typescript',
|
||||
],
|
||||
plugins: [
|
||||
'babel-plugin-istanbul',
|
||||
'@babel/plugin-proposal-object-rest-spread',
|
||||
'@babel/plugin-syntax-dynamic-import',
|
||||
'@babel/plugin-transform-regenerator',
|
||||
@@ -50,6 +51,7 @@ module.exports = {
|
||||
'@babel/preset-react',
|
||||
'@babel/preset-typescript',
|
||||
],
|
||||
plugins: ['react-refresh/babel'],
|
||||
ignore: ['**/*.test.jsx', '**/*.test.js', '__snapshots__', '__tests__'],
|
||||
},
|
||||
},
|
||||
|
||||
+1
-1
@@ -1 +1 @@
|
||||
26fd51f53589244a47807106c3065e3926a16903
|
||||
e5286d9fc2449da50b738e7e6208d489cce1633e
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-pmap",
|
||||
"version": "3.11.0-beta.52",
|
||||
"version": "3.9.2",
|
||||
"description": "DICOM Parametric Map read workflow",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -33,10 +33,10 @@
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.11.0-beta.52",
|
||||
"@ohif/extension-cornerstone": "3.11.0-beta.52",
|
||||
"@ohif/extension-default": "3.11.0-beta.52",
|
||||
"@ohif/i18n": "3.11.0-beta.52",
|
||||
"@ohif/core": "3.9.2",
|
||||
"@ohif/extension-cornerstone": "3.9.2",
|
||||
"@ohif/extension-default": "3.9.2",
|
||||
"@ohif/i18n": "3.9.2",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^18.3.1",
|
||||
"react-dom": "^18.3.1",
|
||||
@@ -46,9 +46,9 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^3.15.6",
|
||||
"@cornerstonejs/core": "^3.15.6",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"@cornerstonejs/adapters": "^2.2.20",
|
||||
"@cornerstonejs/core": "^2.2.20",
|
||||
"@kitware/vtk.js": "32.1.1",
|
||||
"react-color": "^2.19.3"
|
||||
}
|
||||
}
|
||||
@@ -1,9 +1,10 @@
|
||||
import { utils, Types as OhifTypes } from '@ohif/core';
|
||||
import i18n from '@ohif/i18n';
|
||||
import { utils } from '@ohif/core';
|
||||
import { metaData, cache, utilities as csUtils, volumeLoader } from '@cornerstonejs/core';
|
||||
import { adaptersPMAP } from '@cornerstonejs/adapters';
|
||||
import { SOPClassHandlerId } from './id';
|
||||
import { dicomLoaderService, VOLUME_LOADER_SCHEME } from '@ohif/extension-cornerstone';
|
||||
import { dicomLoaderService } from '@ohif/extension-cornerstone';
|
||||
|
||||
const VOLUME_LOADER_SCHEME = 'cornerstoneStreamingImageVolume';
|
||||
const sopClassUids = ['1.2.840.10008.5.1.4.1.1.30'];
|
||||
|
||||
function _getDisplaySetsFromSeries(
|
||||
@@ -56,8 +57,7 @@ function _getDisplaySetsFromSeries(
|
||||
wadoRoot,
|
||||
wadoUriRoot,
|
||||
wadoUri,
|
||||
supportsWindowLevel: true,
|
||||
label: SeriesDescription || `${i18n.t('Series')} ${SeriesNumber} - ${i18n.t('PMAP')}`,
|
||||
isOverlayDisplaySet: true,
|
||||
};
|
||||
|
||||
const referencedSeriesSequence = instance.ReferencedSeriesSequence;
|
||||
@@ -227,8 +227,7 @@ async function _loadParametricMap({ displaySet, headers }: withAppTypes) {
|
||||
return derivedVolume;
|
||||
}
|
||||
|
||||
function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams) {
|
||||
const { servicesManager, extensionManager } = params;
|
||||
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
|
||||
const getDisplaySetsFromSeries = instances => {
|
||||
return _getDisplaySetsFromSeries(instances, servicesManager, extensionManager);
|
||||
};
|
||||
|
||||
@@ -1,12 +1,18 @@
|
||||
import PropTypes from 'prop-types';
|
||||
import React, { useCallback, useEffect, useRef, useState } from 'react';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import { OHIFCornerstoneViewport } from '@ohif/extension-cornerstone';
|
||||
import { useViewportGrid, LoadingIndicatorTotalPercent } from '@ohif/ui';
|
||||
|
||||
function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
const { displaySets, children, viewportOptions, displaySetOptions, servicesManager } = props;
|
||||
const {
|
||||
displaySets,
|
||||
children,
|
||||
viewportOptions,
|
||||
displaySetOptions,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
} = props;
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
const { displaySetService, segmentationService, uiNotificationService, customizationService } =
|
||||
const { displaySetService, segmentationService, uiNotificationService } =
|
||||
servicesManager.services;
|
||||
|
||||
// PMAP viewport will always have a single display set
|
||||
@@ -14,10 +20,6 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
throw new Error('PMAP viewport must have a single display set');
|
||||
}
|
||||
|
||||
const LoadingIndicatorTotalPercent = customizationService.getCustomization(
|
||||
'ui.loadingIndicatorTotalPercent'
|
||||
);
|
||||
|
||||
const pmapDisplaySet = displaySets[0];
|
||||
const [viewportGrid, viewportGridService] = useViewportGrid();
|
||||
const referencedDisplaySetRef = useRef(null);
|
||||
@@ -53,6 +55,9 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
|
||||
const getCornerstoneViewport = useCallback(() => {
|
||||
const { displaySet: referencedDisplaySet } = referencedDisplaySetRef.current;
|
||||
const { component: Component } = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.viewportModule.cornerstone'
|
||||
);
|
||||
|
||||
displaySetOptions.unshift({});
|
||||
const [pmapDisplaySetOptions] = displaySetOptions;
|
||||
@@ -84,7 +89,7 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
});
|
||||
|
||||
return (
|
||||
<OHIFCornerstoneViewport
|
||||
<Component
|
||||
{...props}
|
||||
// Referenced + PMAP displaySets must be passed as parameter in this order
|
||||
displaySets={[referencedDisplaySet, pmapDisplaySet]}
|
||||
@@ -92,19 +97,17 @@ function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
viewportType: 'volume',
|
||||
orientation: viewportOptions.orientation,
|
||||
viewportId: viewportOptions.viewportId,
|
||||
presentationIds: viewportOptions.presentationIds,
|
||||
}}
|
||||
displaySetOptions={[{}, pmapDisplaySetOptions]}
|
||||
/>
|
||||
></Component>
|
||||
);
|
||||
}, [
|
||||
extensionManager,
|
||||
displaySetOptions,
|
||||
props,
|
||||
pmapDisplaySet,
|
||||
viewportOptions.orientation,
|
||||
viewportOptions.viewportId,
|
||||
viewportOptions.presentationIds,
|
||||
uiNotificationService,
|
||||
]);
|
||||
|
||||
// Cleanup the PMAP viewport when the viewport is destroyed
|
||||
|
||||
File diff suppressed because it is too large.
Load diff
@@ -37,6 +37,7 @@ module.exports = {
|
||||
'@babel/preset-react',
|
||||
'@babel/preset-typescript',
|
||||
],
|
||||
plugins: ['react-refresh/babel'],
|
||||
ignore: ['**/*.test.jsx', '**/*.test.js', '__snapshots__', '__tests__'],
|
||||
},
|
||||
},
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-rt",
|
||||
"version": "3.11.0-beta.52",
|
||||
"version": "3.9.2",
|
||||
"description": "DICOM RT read workflow",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -33,10 +33,10 @@
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.11.0-beta.52",
|
||||
"@ohif/extension-cornerstone": "3.11.0-beta.52",
|
||||
"@ohif/extension-default": "3.11.0-beta.52",
|
||||
"@ohif/i18n": "3.11.0-beta.52",
|
||||
"@ohif/core": "3.9.2",
|
||||
"@ohif/extension-cornerstone": "3.9.2",
|
||||
"@ohif/extension-default": "3.9.2",
|
||||
"@ohif/i18n": "3.9.2",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^18.3.1",
|
||||
"react-dom": "^18.3.1",
|
||||
|
||||
@@ -27,7 +27,7 @@ const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
// it will be in the correct position zoom and pan
|
||||
commandsManager.runCommand('updateStoredPositionPresentation', {
|
||||
viewportId,
|
||||
displaySetInstanceUIDs: [referencedDisplaySet.displaySetInstanceUID],
|
||||
displaySetInstanceUID: referencedDisplaySet.displaySetInstanceUID,
|
||||
});
|
||||
|
||||
viewportGridService.setDisplaySetsForViewport({
|
||||
|
||||
@@ -1,5 +1,4 @@
|
||||
import { utils, Types as OhifTypes } from '@ohif/core';
|
||||
import i18n from '@ohif/i18n';
|
||||
import { utils } from '@ohif/core';
|
||||
|
||||
import { SOPClassHandlerId } from './id';
|
||||
import loadRTStruct from './loadRTStruct';
|
||||
@@ -54,7 +53,6 @@ function _getDisplaySetsFromSeries(
|
||||
wadoUriRoot,
|
||||
wadoUri,
|
||||
isOverlayDisplaySet: true,
|
||||
label: SeriesDescription || `${i18n.t('Series')} ${SeriesNumber} - ${i18n.t('RTSTRUCT')}`,
|
||||
};
|
||||
|
||||
let referencedSeriesSequence = instance.ReferencedSeriesSequence;
|
||||
@@ -96,19 +94,12 @@ function _getDisplaySetsFromSeries(
|
||||
displaySet.referencedDisplaySetInstanceUID = referencedDisplaySet.displaySetInstanceUID;
|
||||
}
|
||||
|
||||
displaySet.load = ({ headers, createSegmentation = true }) =>
|
||||
_load(displaySet, servicesManager, extensionManager, headers, createSegmentation);
|
||||
displaySet.load = ({ headers }) => _load(displaySet, servicesManager, extensionManager, headers);
|
||||
|
||||
return [displaySet];
|
||||
}
|
||||
|
||||
function _load(
|
||||
rtDisplaySet,
|
||||
servicesManager: AppTypes.ServicesManager,
|
||||
extensionManager,
|
||||
headers,
|
||||
createSegmentation = true
|
||||
) {
|
||||
function _load(rtDisplaySet, servicesManager: AppTypes.ServicesManager, extensionManager, headers) {
|
||||
const { SOPInstanceUID } = rtDisplaySet;
|
||||
const { segmentationService } = servicesManager.services;
|
||||
if (
|
||||
@@ -130,21 +121,16 @@ function _load(
|
||||
rtDisplaySet.structureSet = structureSet;
|
||||
}
|
||||
|
||||
if (createSegmentation) {
|
||||
segmentationService
|
||||
.createSegmentationForRTDisplaySet(rtDisplaySet)
|
||||
.then(() => {
|
||||
rtDisplaySet.loading = false;
|
||||
resolve();
|
||||
})
|
||||
.catch(error => {
|
||||
rtDisplaySet.loading = false;
|
||||
reject(error);
|
||||
});
|
||||
} else {
|
||||
rtDisplaySet.loading = false;
|
||||
resolve();
|
||||
}
|
||||
segmentationService
|
||||
.createSegmentationForRTDisplaySet(rtDisplaySet)
|
||||
.then(() => {
|
||||
rtDisplaySet.loading = false;
|
||||
resolve();
|
||||
})
|
||||
.catch(error => {
|
||||
rtDisplaySet.loading = false;
|
||||
reject(error);
|
||||
});
|
||||
});
|
||||
|
||||
return loadPromises[SOPInstanceUID];
|
||||
@@ -185,14 +171,20 @@ function _deriveReferencedSeriesSequenceFromFrameOfReferenceSequence(
|
||||
return ReferencedSeriesSequence;
|
||||
}
|
||||
|
||||
function _segmentationExistsInCache() {
|
||||
function _segmentationExistsInCache(
|
||||
rtDisplaySet,
|
||||
segmentationService: AppTypes.SegmentationService
|
||||
) {
|
||||
// Todo: fix this
|
||||
return false;
|
||||
// This should be abstracted with the CornerstoneCacheService
|
||||
const rtContourId = rtDisplaySet.displaySetInstanceUID;
|
||||
const contour = segmentationService.getContour(rtContourId);
|
||||
|
||||
return contour !== undefined;
|
||||
}
|
||||
|
||||
function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams) {
|
||||
const { servicesManager, extensionManager } = params;
|
||||
|
||||
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
|
||||
return [
|
||||
{
|
||||
name: 'dicom-rt',
|
||||
|
||||
@@ -126,7 +126,6 @@ export default async function loadRTStruct(extensionManager, rtStructDisplaySet,
|
||||
SeriesInstanceUID: instance.SeriesInstanceUID,
|
||||
ROIContours: [],
|
||||
visible: true,
|
||||
ReferencedSOPInstanceUIDsSet: new Set(),
|
||||
};
|
||||
|
||||
for (let i = 0; i < ROIContourSequence.length; i++) {
|
||||
@@ -143,8 +142,7 @@ export default async function loadRTStruct(extensionManager, rtStructDisplaySet,
|
||||
|
||||
const contourPoints = [];
|
||||
for (let c = 0; c < ContourSequenceArray.length; c++) {
|
||||
const { ContourData, NumberOfContourPoints, ContourGeometricType, ContourImageSequence } =
|
||||
ContourSequenceArray[c];
|
||||
const { ContourData, NumberOfContourPoints, ContourGeometricType } = ContourSequenceArray[c];
|
||||
|
||||
let isSupported = false;
|
||||
|
||||
@@ -174,12 +172,6 @@ export default async function loadRTStruct(extensionManager, rtStructDisplaySet,
|
||||
type: ContourGeometricType,
|
||||
isSupported,
|
||||
});
|
||||
|
||||
if (ContourImageSequence?.ReferencedSOPInstanceUID) {
|
||||
structureSet.ReferencedSOPInstanceUIDsSet.add(
|
||||
ContourImageSequence?.ReferencedSOPInstanceUID
|
||||
);
|
||||
}
|
||||
}
|
||||
|
||||
_setROIContourMetadata(
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
function createRTToolGroupAndAddTools(ToolGroupService, customizationService, toolGroupId) {
|
||||
const tools = customizationService.getCustomization('cornerstone.overlayViewportTools');
|
||||
const { tools } = customizationService.get('cornerstone.overlayViewportTools') ?? {};
|
||||
|
||||
return ToolGroupService.createToolGroupAndAddTools(toolGroupId, tools);
|
||||
}
|
||||
|
||||
@@ -1,4 +1,10 @@
|
||||
import { utils, Types } from '@ohif/extension-cornerstone';
|
||||
import { ButtonEnums } from '@ohif/ui';
|
||||
|
||||
const RESPONSE = {
|
||||
NO_NEVER: -1,
|
||||
CANCEL: 0,
|
||||
HYDRATE_SEG: 5,
|
||||
};
|
||||
|
||||
function promptHydrateRT({
|
||||
servicesManager,
|
||||
@@ -6,20 +12,70 @@ function promptHydrateRT({
|
||||
viewportId,
|
||||
preHydrateCallbacks,
|
||||
hydrateRTDisplaySet,
|
||||
}: {
|
||||
servicesManager: AppTypes.ServicesManager;
|
||||
rtDisplaySet: AppTypes.DisplaySet;
|
||||
viewportId: string;
|
||||
preHydrateCallbacks?: Types.HydrationCallback[];
|
||||
hydrateRTDisplaySet: Types.HydrationCallback;
|
||||
}) {
|
||||
return utils.promptHydrationDialog({
|
||||
servicesManager,
|
||||
viewportId,
|
||||
displaySet: rtDisplaySet,
|
||||
preHydrateCallbacks,
|
||||
hydrateCallback: hydrateRTDisplaySet,
|
||||
type: 'RTSTRUCT',
|
||||
}: withAppTypes) {
|
||||
const { uiViewportDialogService } = servicesManager.services;
|
||||
const extensionManager = servicesManager._extensionManager;
|
||||
const appConfig = extensionManager._appConfig;
|
||||
return new Promise(async function (resolve, reject) {
|
||||
const promptResult = appConfig?.disableConfirmationPrompts
|
||||
? RESPONSE.HYDRATE_SEG
|
||||
: await _askHydrate(uiViewportDialogService, viewportId);
|
||||
|
||||
if (promptResult === RESPONSE.HYDRATE_SEG) {
|
||||
preHydrateCallbacks?.forEach(callback => {
|
||||
callback();
|
||||
});
|
||||
|
||||
const isHydrated = await hydrateRTDisplaySet({
|
||||
rtDisplaySet,
|
||||
viewportId,
|
||||
servicesManager,
|
||||
});
|
||||
|
||||
resolve(isHydrated);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
function _askHydrate(uiViewportDialogService: AppTypes.UIViewportDialogService, viewportId) {
|
||||
return new Promise(function (resolve, reject) {
|
||||
const message = 'Do you want to open this Segmentation?';
|
||||
const actions = [
|
||||
{
|
||||
id: 'no-hydrate',
|
||||
type: ButtonEnums.type.secondary,
|
||||
text: 'No',
|
||||
value: RESPONSE.CANCEL,
|
||||
},
|
||||
{
|
||||
id: 'yes-hydrate',
|
||||
type: ButtonEnums.type.primary,
|
||||
text: 'Yes',
|
||||
value: RESPONSE.HYDRATE_SEG,
|
||||
},
|
||||
];
|
||||
const onSubmit = result => {
|
||||
uiViewportDialogService.hide();
|
||||
resolve(result);
|
||||
};
|
||||
|
||||
uiViewportDialogService.show({
|
||||
id: 'promptHydrateRT',
|
||||
viewportId,
|
||||
type: 'info',
|
||||
message,
|
||||
actions,
|
||||
onSubmit,
|
||||
onOutsideClick: () => {
|
||||
uiViewportDialogService.hide();
|
||||
resolve(RESPONSE.CANCEL);
|
||||
},
|
||||
onKeyPress: event => {
|
||||
if (event.key === 'Enter') {
|
||||
onSubmit(RESPONSE.HYDRATE_SEG);
|
||||
}
|
||||
},
|
||||
});
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
@@ -1,27 +1,33 @@
|
||||
import React, { Component, useCallback, useEffect, useRef, useState } from 'react';
|
||||
import React, { useCallback, useEffect, useRef, useState } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import {
|
||||
utils,
|
||||
usePositionPresentationStore,
|
||||
OHIFCornerstoneViewport,
|
||||
} from '@ohif/extension-cornerstone';
|
||||
import { useViewportGrid, LoadingIndicatorTotalPercent, ViewportActionArrows } from '@ohif/ui';
|
||||
|
||||
import promptHydrateRT from '../utils/promptHydrateRT';
|
||||
import _getStatusComponent from './_getStatusComponent';
|
||||
|
||||
import createRTToolGroupAndAddTools from '../utils/initRTToolGroup';
|
||||
import { useSystem } from '@ohif/core/src';
|
||||
import { SegmentationRepresentations } from '@cornerstonejs/tools/enums';
|
||||
|
||||
const RT_TOOLGROUP_BASE_NAME = 'RTToolGroup';
|
||||
|
||||
function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
const { servicesManager, commandsManager } = useSystem();
|
||||
const { children, displaySets, viewportOptions } = props as {
|
||||
children: React.ReactNode;
|
||||
displaySets: AppTypes.DisplaySet[];
|
||||
viewportOptions: AppTypes.ViewportOptions;
|
||||
};
|
||||
const {
|
||||
children,
|
||||
displaySets,
|
||||
viewportOptions,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
commandsManager,
|
||||
} = props;
|
||||
|
||||
const { displaySetService, toolGroupService, segmentationService, customizationService } =
|
||||
servicesManager.services;
|
||||
const {
|
||||
displaySetService,
|
||||
toolGroupService,
|
||||
segmentationService,
|
||||
uiNotificationService,
|
||||
customizationService,
|
||||
viewportActionCornersService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
|
||||
@@ -32,25 +38,32 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
throw new Error('RT viewport should only have a single display set');
|
||||
}
|
||||
|
||||
const LoadingIndicatorTotalPercent = customizationService.getCustomization(
|
||||
'ui.loadingIndicatorTotalPercent'
|
||||
);
|
||||
|
||||
const rtDisplaySet = displaySets[0];
|
||||
|
||||
const [{ viewports, activeViewportId }, viewportGridService] = useViewportGrid();
|
||||
const [viewportGrid, viewportGridService] = useViewportGrid();
|
||||
|
||||
// States
|
||||
const selectedSegmentObjectIndex: number = 0;
|
||||
const { setPositionPresentation } = usePositionPresentationStore();
|
||||
const [isToolGroupCreated, setToolGroupCreated] = useState(false);
|
||||
const [selectedSegment, setSelectedSegment] = useState(1);
|
||||
|
||||
// Hydration means that the RT is opened and segments are loaded into the
|
||||
// segmentation panel, and RT is also rendered on any viewport that is in the
|
||||
// same frameOfReferenceUID as the referencedSeriesUID of the RT. However,
|
||||
// loading basically means RT loading over network and bit unpacking of the
|
||||
// RT data.
|
||||
const [isHydrated, setIsHydrated] = useState(rtDisplaySet.isHydrated);
|
||||
const [rtIsLoading, setRtIsLoading] = useState(!rtDisplaySet.isLoaded);
|
||||
const [element, setElement] = useState(null);
|
||||
const [processingProgress, setProcessingProgress] = useState({
|
||||
percentComplete: null,
|
||||
totalSegments: null,
|
||||
});
|
||||
|
||||
// refs
|
||||
const referencedDisplaySetRef = useRef(null);
|
||||
|
||||
const { viewports, activeViewportId } = viewportGrid;
|
||||
|
||||
const referencedDisplaySetInstanceUID = rtDisplaySet.referencedDisplaySetInstanceUID;
|
||||
const referencedDisplaySet = displaySetService.getDisplaySetByUID(
|
||||
referencedDisplaySetInstanceUID
|
||||
@@ -61,31 +74,110 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
displaySet: referencedDisplaySet,
|
||||
metadata: referencedDisplaySetMetadata,
|
||||
};
|
||||
/**
|
||||
* OnElementEnabled callback which is called after the cornerstoneExtension
|
||||
* has enabled the element. Note: we delegate all the image rendering to
|
||||
* cornerstoneExtension, so we don't need to do anything here regarding
|
||||
* the image rendering, element enabling etc.
|
||||
*/
|
||||
const onElementEnabled = evt => {
|
||||
setElement(evt.detail.element);
|
||||
};
|
||||
|
||||
const onElementDisabled = () => {
|
||||
setElement(null);
|
||||
};
|
||||
|
||||
const storePresentationState = useCallback(() => {
|
||||
viewportGrid?.viewports.forEach(({ viewportId }) => {
|
||||
commandsManager.runCommand('storePresentation', {
|
||||
viewportId,
|
||||
});
|
||||
});
|
||||
}, [viewportGrid]);
|
||||
|
||||
const hydrateRTDisplaySet = useCallback(
|
||||
({ rtDisplaySet, viewportId }) => {
|
||||
commandsManager.runCommand('hydrateRTSDisplaySet', {
|
||||
displaySet: rtDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
},
|
||||
[commandsManager]
|
||||
);
|
||||
|
||||
const getCornerstoneViewport = useCallback(() => {
|
||||
const { component: Component } = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.viewportModule.cornerstone'
|
||||
);
|
||||
|
||||
const { displaySet: referencedDisplaySet } = referencedDisplaySetRef.current;
|
||||
|
||||
// Todo: jump to the center of the first segment
|
||||
return (
|
||||
<Component
|
||||
{...props}
|
||||
displaySets={[referencedDisplaySet, rtDisplaySet]}
|
||||
viewportOptions={{
|
||||
viewportType: 'stack',
|
||||
toolGroupId: toolGroupId,
|
||||
orientation: viewportOptions.orientation,
|
||||
viewportId: viewportOptions.viewportId,
|
||||
}}
|
||||
onElementEnabled={evt => {
|
||||
props.onElementEnabled?.(evt);
|
||||
onElementEnabled(evt);
|
||||
}}
|
||||
onElementDisabled={onElementDisabled}
|
||||
></Component>
|
||||
);
|
||||
}, [viewportId, rtDisplaySet, toolGroupId]);
|
||||
|
||||
const onSegmentChange = useCallback(
|
||||
direction => {
|
||||
const segmentationId = rtDisplaySet.displaySetInstanceUID;
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
const { segments } = segmentation;
|
||||
|
||||
const numberOfSegments = Object.keys(segments).length;
|
||||
|
||||
let newSelectedSegmentIndex = selectedSegment + direction;
|
||||
|
||||
// Segment 0 is always background
|
||||
if (newSelectedSegmentIndex >= numberOfSegments - 1) {
|
||||
newSelectedSegmentIndex = 1;
|
||||
} else if (newSelectedSegmentIndex === 0) {
|
||||
newSelectedSegmentIndex = numberOfSegments - 1;
|
||||
}
|
||||
|
||||
segmentationService.jumpToSegmentCenter(segmentationId, newSelectedSegmentIndex, viewportId);
|
||||
setSelectedSegment(newSelectedSegmentIndex);
|
||||
},
|
||||
[selectedSegment, segmentationService]
|
||||
);
|
||||
|
||||
useEffect(() => {
|
||||
if (rtIsLoading) {
|
||||
return;
|
||||
}
|
||||
|
||||
// if not active viewport, return
|
||||
if (viewportId !== activeViewportId) {
|
||||
return;
|
||||
}
|
||||
|
||||
promptHydrateRT({
|
||||
servicesManager,
|
||||
viewportId,
|
||||
rtDisplaySet,
|
||||
hydrateRTDisplaySet: async () => {
|
||||
return commandsManager.runCommand('hydrateSecondaryDisplaySet', {
|
||||
displaySet: rtDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
},
|
||||
preHydrateCallbacks: [storePresentationState],
|
||||
hydrateRTDisplaySet,
|
||||
}).then(isHydrated => {
|
||||
if (isHydrated) {
|
||||
setIsHydrated(true);
|
||||
}
|
||||
});
|
||||
}, [servicesManager, viewportId, rtDisplaySet, rtIsLoading, commandsManager, activeViewportId]);
|
||||
}, [servicesManager, viewportId, rtDisplaySet, rtIsLoading]);
|
||||
|
||||
useEffect(() => {
|
||||
// I'm not sure what is this, since in RT we support Overlapping segments
|
||||
// via contours
|
||||
const { unsubscribe } = segmentationService.subscribe(
|
||||
segmentationService.EVENTS.SEGMENTATION_LOADING_COMPLETE,
|
||||
evt => {
|
||||
@@ -93,16 +185,11 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
setRtIsLoading(false);
|
||||
}
|
||||
|
||||
if (rtDisplaySet?.firstSegmentedSliceImageId && viewportOptions?.presentationIds) {
|
||||
const { firstSegmentedSliceImageId } = rtDisplaySet;
|
||||
const { presentationIds } = viewportOptions;
|
||||
|
||||
setPositionPresentation(presentationIds.positionPresentationId, {
|
||||
viewportType: 'stack',
|
||||
viewReference: {
|
||||
referencedImageId: firstSegmentedSliceImageId,
|
||||
},
|
||||
viewPresentation: {},
|
||||
if (evt.overlappingSegments) {
|
||||
uiNotificationService.show({
|
||||
title: 'Overlapping Segments',
|
||||
message: 'Overlapping segments detected which is not currently supported',
|
||||
type: 'warning',
|
||||
});
|
||||
}
|
||||
}
|
||||
@@ -114,7 +201,7 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
}, [rtDisplaySet]);
|
||||
|
||||
useEffect(() => {
|
||||
const segmentLoadingSubscription = segmentationService.subscribe(
|
||||
const { unsubscribe } = segmentationService.subscribe(
|
||||
segmentationService.EVENTS.SEGMENT_LOADING_COMPLETE,
|
||||
({ percentComplete, numSegments }) => {
|
||||
setProcessingProgress({
|
||||
@@ -124,7 +211,16 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
}
|
||||
);
|
||||
|
||||
const displaySetsRemovedSubscription = displaySetService.subscribe(
|
||||
return () => {
|
||||
unsubscribe();
|
||||
};
|
||||
}, [rtDisplaySet]);
|
||||
|
||||
/**
|
||||
Cleanup the SEG viewport when the viewport is destroyed
|
||||
*/
|
||||
useEffect(() => {
|
||||
const onDisplaySetsRemovedSubscription = displaySetService.subscribe(
|
||||
displaySetService.EVENTS.DISPLAY_SETS_REMOVED,
|
||||
({ displaySetInstanceUIDs }) => {
|
||||
const activeViewport = viewports.get(activeViewportId);
|
||||
@@ -138,10 +234,9 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
);
|
||||
|
||||
return () => {
|
||||
segmentLoadingSubscription.unsubscribe();
|
||||
displaySetsRemovedSubscription.unsubscribe();
|
||||
onDisplaySetsRemovedSubscription.unsubscribe();
|
||||
};
|
||||
}, [rtDisplaySet, displaySetService, viewports, activeViewportId, viewportGridService]);
|
||||
}, []);
|
||||
|
||||
useEffect(() => {
|
||||
let toolGroup = toolGroupService.getToolGroup(toolGroupId);
|
||||
@@ -152,36 +247,43 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
|
||||
toolGroup = createRTToolGroupAndAddTools(toolGroupService, customizationService, toolGroupId);
|
||||
|
||||
setToolGroupCreated(true);
|
||||
|
||||
return () => {
|
||||
// remove the segmentation representations if seg displayset changed
|
||||
segmentationService.removeSegmentationRepresentations(viewportId);
|
||||
referencedDisplaySetRef.current = null;
|
||||
|
||||
toolGroupService.destroyToolGroup(toolGroupId);
|
||||
};
|
||||
}, []);
|
||||
|
||||
const getCornerstoneViewport = useCallback(() => {
|
||||
const { displaySet: referencedDisplaySet } = referencedDisplaySetRef.current;
|
||||
useEffect(() => {
|
||||
setIsHydrated(rtDisplaySet.isHydrated);
|
||||
|
||||
// Todo: jump to the center of the first segment
|
||||
return (
|
||||
<OHIFCornerstoneViewport
|
||||
{...props}
|
||||
displaySets={[referencedDisplaySet, rtDisplaySet]}
|
||||
viewportOptions={{
|
||||
viewportType: 'stack',
|
||||
toolGroupId: toolGroupId,
|
||||
orientation: viewportOptions.orientation,
|
||||
viewportId: viewportOptions.viewportId,
|
||||
presentationIds: viewportOptions.presentationIds,
|
||||
}}
|
||||
onElementEnabled={evt => {
|
||||
props.onElementEnabled?.(evt);
|
||||
}}
|
||||
/>
|
||||
);
|
||||
}, [viewportId, rtDisplaySet, toolGroupId]);
|
||||
return () => {
|
||||
// remove the segmentation representations if seg displayset changed
|
||||
segmentationService.removeSegmentationRepresentations(viewportId);
|
||||
referencedDisplaySetRef.current = null;
|
||||
};
|
||||
}, [rtDisplaySet]);
|
||||
|
||||
const onStatusClick = useCallback(async () => {
|
||||
// Before hydrating a RT and make it added to all viewports in the grid
|
||||
// that share the same frameOfReferenceUID, we need to store the viewport grid
|
||||
// presentation state, so that we can restore it after hydrating the RT. This is
|
||||
// required if the user has changed the viewport (other viewport than RT viewport)
|
||||
// presentation state (w/l and invert) and then opens the RT. If we don't store
|
||||
// the presentation state, the viewport will be reset to the default presentation
|
||||
storePresentationState();
|
||||
const isHydrated = await hydrateRTDisplaySet({
|
||||
rtDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
|
||||
setIsHydrated(isHydrated);
|
||||
}, [hydrateRTDisplaySet, rtDisplaySet, storePresentationState, viewportId]);
|
||||
|
||||
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
let childrenWithProps = null;
|
||||
|
||||
if (
|
||||
@@ -204,6 +306,43 @@ function OHIFCornerstoneRTViewport(props: withAppTypes) {
|
||||
});
|
||||
}
|
||||
|
||||
useEffect(() => {
|
||||
viewportActionCornersService.addComponents([
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportStatusComponent',
|
||||
component: _getStatusComponent({
|
||||
isHydrated,
|
||||
onStatusClick,
|
||||
}),
|
||||
indexPriority: -100,
|
||||
location: viewportActionCornersService.LOCATIONS.topLeft,
|
||||
},
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportActionArrowsComponent',
|
||||
component: (
|
||||
<ViewportActionArrows
|
||||
key="actionArrows"
|
||||
onArrowsClick={onSegmentChange}
|
||||
className={
|
||||
viewportId === activeViewportId ? 'visible' : 'invisible group-hover/pane:visible'
|
||||
}
|
||||
></ViewportActionArrows>
|
||||
),
|
||||
indexPriority: 0,
|
||||
location: viewportActionCornersService.LOCATIONS.topRight,
|
||||
},
|
||||
]);
|
||||
}, [
|
||||
activeViewportId,
|
||||
isHydrated,
|
||||
onSegmentChange,
|
||||
onStatusClick,
|
||||
viewportActionCornersService,
|
||||
viewportId,
|
||||
]);
|
||||
|
||||
return (
|
||||
<>
|
||||
<div className="relative flex h-full w-full flex-row overflow-hidden">
|
||||
|
||||
@@ -0,0 +1,62 @@
|
||||
import React from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { Icon, Tooltip } from '@ohif/ui';
|
||||
|
||||
export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
let ToolTipMessage = null;
|
||||
let StatusIcon = null;
|
||||
|
||||
switch (isHydrated) {
|
||||
case true:
|
||||
StatusIcon = () => <Icon name="status-alert" />;
|
||||
|
||||
ToolTipMessage = () => <div>This Segmentation is loaded in the segmentation panel</div>;
|
||||
break;
|
||||
case false:
|
||||
StatusIcon = () => (
|
||||
<Icon
|
||||
className="text-aqua-pale"
|
||||
name="status-untracked"
|
||||
/>
|
||||
);
|
||||
|
||||
ToolTipMessage = () => <div>Click LOAD to load RTSTRUCT.</div>;
|
||||
}
|
||||
|
||||
const StatusArea = () => {
|
||||
const { t } = useTranslation('Common');
|
||||
const loadStr = t('LOAD');
|
||||
|
||||
return (
|
||||
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
|
||||
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
|
||||
<StatusIcon />
|
||||
<span className="ml-1">RTSTRUCT</span>
|
||||
</div>
|
||||
{!isHydrated && (
|
||||
<div
|
||||
className="bg-primary-main hover:bg-primary-light ml-1 cursor-pointer rounded px-1.5 hover:text-black"
|
||||
// Using onMouseUp here because onClick is not working when the viewport is not active and is styled with pointer-events:none
|
||||
onMouseUp={onStatusClick}
|
||||
>
|
||||
{loadStr}
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
{ToolTipMessage && (
|
||||
<Tooltip
|
||||
content={<ToolTipMessage />}
|
||||
position="bottom-left"
|
||||
>
|
||||
<StatusArea />
|
||||
</Tooltip>
|
||||
)}
|
||||
{!ToolTipMessage && <StatusArea />}
|
||||
</>
|
||||
);
|
||||
}
|
||||
File diff suppressed because it is too large.
Load diff
@@ -37,6 +37,7 @@ module.exports = {
|
||||
'@babel/preset-react',
|
||||
'@babel/preset-typescript',
|
||||
],
|
||||
plugins: ['react-refresh/babel'],
|
||||
ignore: ['**/*.test.jsx', '**/*.test.js', '__snapshots__', '__tests__'],
|
||||
},
|
||||
},
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-seg",
|
||||
"version": "3.11.0-beta.52",
|
||||
"version": "3.9.2",
|
||||
"description": "DICOM SEG read workflow",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -33,10 +33,10 @@
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.11.0-beta.52",
|
||||
"@ohif/extension-cornerstone": "3.11.0-beta.52",
|
||||
"@ohif/extension-default": "3.11.0-beta.52",
|
||||
"@ohif/i18n": "3.11.0-beta.52",
|
||||
"@ohif/core": "3.9.2",
|
||||
"@ohif/extension-cornerstone": "3.9.2",
|
||||
"@ohif/extension-default": "3.9.2",
|
||||
"@ohif/i18n": "3.9.2",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^18.3.1",
|
||||
"react-dom": "^18.3.1",
|
||||
@@ -46,9 +46,9 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^3.15.6",
|
||||
"@cornerstonejs/core": "^3.15.6",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"@cornerstonejs/adapters": "^2.2.20",
|
||||
"@cornerstonejs/core": "^2.2.20",
|
||||
"@kitware/vtk.js": "32.1.1",
|
||||
"react-color": "^2.19.3"
|
||||
}
|
||||
}
|
||||
@@ -1,12 +1,20 @@
|
||||
import dcmjs from 'dcmjs';
|
||||
import { classes, Types } from '@ohif/core';
|
||||
import { cache, metaData } from '@cornerstonejs/core';
|
||||
import { segmentation as cornerstoneToolsSegmentation } from '@cornerstonejs/tools';
|
||||
import { adaptersRT, helpers, adaptersSEG } from '@cornerstonejs/adapters';
|
||||
import { createReportDialogPrompt } from '@ohif/extension-default';
|
||||
import { DicomMetadataStore } from '@ohif/core';
|
||||
import { Types } from '@ohif/core';
|
||||
import { cache, metaData } from '@cornerstonejs/core';
|
||||
import {
|
||||
segmentation as cornerstoneToolsSegmentation,
|
||||
Enums as cornerstoneToolsEnums,
|
||||
utilities,
|
||||
} from '@cornerstonejs/tools';
|
||||
import { adaptersRT, helpers, adaptersSEG } from '@cornerstonejs/adapters';
|
||||
import { classes, DicomMetadataStore } from '@ohif/core';
|
||||
|
||||
import PROMPT_RESPONSES from '../../default/src/utils/_shared/PROMPT_RESPONSES';
|
||||
import vtkImageMarchingSquares from '@kitware/vtk.js/Filters/General/ImageMarchingSquares';
|
||||
import vtkDataArray from '@kitware/vtk.js/Common/Core/DataArray';
|
||||
import vtkImageData from '@kitware/vtk.js/Common/DataModel/ImageData';
|
||||
|
||||
const { segmentation: segmentationUtils } = utilities;
|
||||
|
||||
const { datasetToBlob } = dcmjs.data;
|
||||
|
||||
@@ -37,8 +45,13 @@ const commandsModule = ({
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
}: Types.Extensions.ExtensionParams): Types.Extensions.CommandsModule => {
|
||||
const { segmentationService, displaySetService, viewportGridService, toolGroupService } =
|
||||
servicesManager.services as AppTypes.Services;
|
||||
const {
|
||||
segmentationService,
|
||||
uiDialogService,
|
||||
displaySetService,
|
||||
viewportGridService,
|
||||
toolGroupService,
|
||||
} = servicesManager.services as AppTypes.Services;
|
||||
|
||||
const actions = {
|
||||
/**
|
||||
@@ -213,6 +226,14 @@ const commandsModule = ({
|
||||
* otherwise throws an error.
|
||||
*/
|
||||
storeSegmentation: async ({ segmentationId, dataSource }) => {
|
||||
const promptResult = await createReportDialogPrompt(uiDialogService, {
|
||||
extensionManager,
|
||||
});
|
||||
|
||||
if (promptResult.action !== 1 && !promptResult.value) {
|
||||
return;
|
||||
}
|
||||
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
if (!segmentation) {
|
||||
@@ -220,55 +241,33 @@ const commandsModule = ({
|
||||
}
|
||||
|
||||
const { label } = segmentation;
|
||||
const defaultDataSource = dataSource ?? extensionManager.getActiveDataSource()[0];
|
||||
const SeriesDescription = promptResult.value || label || 'Research Derived Series';
|
||||
|
||||
const {
|
||||
value: reportName,
|
||||
dataSourceName: selectedDataSource,
|
||||
action,
|
||||
} = await createReportDialogPrompt({
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
title: 'Store Segmentation',
|
||||
const generatedData = actions.generateSegmentation({
|
||||
segmentationId,
|
||||
options: {
|
||||
SeriesDescription,
|
||||
},
|
||||
});
|
||||
|
||||
if (action === PROMPT_RESPONSES.CREATE_REPORT) {
|
||||
try {
|
||||
const selectedDataSourceConfig = selectedDataSource
|
||||
? extensionManager.getDataSources(selectedDataSource)[0]
|
||||
: defaultDataSource;
|
||||
|
||||
const generatedData = actions.generateSegmentation({
|
||||
segmentationId,
|
||||
options: {
|
||||
SeriesDescription: reportName || label || 'Research Derived Series',
|
||||
},
|
||||
});
|
||||
|
||||
if (!generatedData || !generatedData.dataset) {
|
||||
throw new Error('Error during segmentation generation');
|
||||
}
|
||||
|
||||
const { dataset: naturalizedReport } = generatedData;
|
||||
|
||||
// DCMJS assigns a dummy study id during creation, and this can cause problems, so clearing it out
|
||||
if (naturalizedReport.StudyID === 'No Study ID') {
|
||||
naturalizedReport.StudyID = '';
|
||||
}
|
||||
|
||||
await selectedDataSourceConfig.store.dicom(naturalizedReport);
|
||||
|
||||
// add the information for where we stored it to the instance as well
|
||||
naturalizedReport.wadoRoot = selectedDataSourceConfig.getConfig().wadoRoot;
|
||||
|
||||
DicomMetadataStore.addInstances([naturalizedReport], true);
|
||||
|
||||
return naturalizedReport;
|
||||
} catch (error) {
|
||||
console.debug('Error storing segmentation:', error);
|
||||
throw error;
|
||||
}
|
||||
if (!generatedData || !generatedData.dataset) {
|
||||
throw new Error('Error during segmentation generation');
|
||||
}
|
||||
|
||||
const { dataset: naturalizedReport } = generatedData;
|
||||
|
||||
await dataSource.store.dicom(naturalizedReport);
|
||||
|
||||
// The "Mode" route listens for DicomMetadataStore changes
|
||||
// When a new instance is added, it listens and
|
||||
// automatically calls makeDisplaySets
|
||||
|
||||
// add the information for where we stored it to the instance as well
|
||||
naturalizedReport.wadoRoot = dataSource.getConfig().wadoRoot;
|
||||
|
||||
DicomMetadataStore.addInstances([naturalizedReport], true);
|
||||
|
||||
return naturalizedReport;
|
||||
},
|
||||
/**
|
||||
* Converts segmentations into RTSS for download.
|
||||
@@ -277,24 +276,21 @@ const commandsModule = ({
|
||||
* converts dataset to downloadable blob.
|
||||
*
|
||||
*/
|
||||
downloadRTSS: async ({ segmentationId }) => {
|
||||
downloadRTSS: ({ segmentationId }) => {
|
||||
const segmentations = segmentationService.getSegmentation(segmentationId);
|
||||
const vtkUtils = {
|
||||
vtkImageMarchingSquares,
|
||||
vtkDataArray,
|
||||
vtkImageData,
|
||||
};
|
||||
|
||||
// inject colors to the segmentIndex
|
||||
const firstRepresentation =
|
||||
segmentationService.getRepresentationsForSegmentation(segmentationId)[0];
|
||||
Object.entries(segmentations.segments).forEach(([segmentIndex, segment]) => {
|
||||
segment.color = segmentationService.getSegmentColor(
|
||||
firstRepresentation.viewportId,
|
||||
segmentationId,
|
||||
segmentIndex
|
||||
);
|
||||
});
|
||||
|
||||
const RTSS = await generateRTSSFromSegmentations(
|
||||
const RTSS = generateRTSSFromSegmentations(
|
||||
segmentations,
|
||||
classes.MetadataProvider,
|
||||
DicomMetadataStore
|
||||
DicomMetadataStore,
|
||||
cache,
|
||||
cornerstoneToolsEnums,
|
||||
vtkUtils
|
||||
);
|
||||
|
||||
try {
|
||||
@@ -307,9 +303,48 @@ const commandsModule = ({
|
||||
console.warn(e);
|
||||
}
|
||||
},
|
||||
setBrushSize: ({ value, toolNames }) => {
|
||||
const brushSize = Number(value);
|
||||
|
||||
toolGroupService.getToolGroupIds()?.forEach(toolGroupId => {
|
||||
if (toolNames?.length === 0) {
|
||||
segmentationUtils.setBrushSizeForToolGroup(toolGroupId, brushSize);
|
||||
} else {
|
||||
toolNames?.forEach(toolName => {
|
||||
segmentationUtils.setBrushSizeForToolGroup(toolGroupId, brushSize, toolName);
|
||||
});
|
||||
}
|
||||
});
|
||||
},
|
||||
setThresholdRange: ({
|
||||
value,
|
||||
toolNames = ['ThresholdCircularBrush', 'ThresholdSphereBrush'],
|
||||
}) => {
|
||||
toolGroupService.getToolGroupIds()?.forEach(toolGroupId => {
|
||||
const toolGroup = toolGroupService.getToolGroup(toolGroupId);
|
||||
toolNames?.forEach(toolName => {
|
||||
toolGroup.setToolConfiguration(toolName, {
|
||||
strategySpecificConfiguration: {
|
||||
THRESHOLD: {
|
||||
threshold: value,
|
||||
},
|
||||
},
|
||||
});
|
||||
});
|
||||
});
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
/**
|
||||
* Obsolete?
|
||||
*/
|
||||
loadSegmentationDisplaySetsForViewport: {
|
||||
commandFn: actions.loadSegmentationDisplaySetsForViewport,
|
||||
},
|
||||
/**
|
||||
* Obsolete?
|
||||
*/
|
||||
loadSegmentationsForViewport: {
|
||||
commandFn: actions.loadSegmentationsForViewport,
|
||||
},
|
||||
@@ -326,6 +361,12 @@ const commandsModule = ({
|
||||
downloadRTSS: {
|
||||
commandFn: actions.downloadRTSS,
|
||||
},
|
||||
setBrushSize: {
|
||||
commandFn: actions.setBrushSize,
|
||||
},
|
||||
setThresholdRange: {
|
||||
commandFn: actions.setThresholdRange,
|
||||
},
|
||||
};
|
||||
|
||||
return {
|
||||
|
||||
@@ -1,6 +1,5 @@
|
||||
import { utils, Types as OhifTypes } from '@ohif/core';
|
||||
import i18n from '@ohif/i18n';
|
||||
import { metaData, eventTarget } from '@cornerstonejs/core';
|
||||
import { utils } from '@ohif/core';
|
||||
import { metaData, triggerEvent, eventTarget } from '@cornerstonejs/core';
|
||||
import { CONSTANTS, segmentation as cstSegmentation } from '@cornerstonejs/tools';
|
||||
import { adaptersSEG, Enums } from '@cornerstonejs/adapters';
|
||||
|
||||
@@ -58,7 +57,6 @@ function _getDisplaySetsFromSeries(
|
||||
wadoUriRoot,
|
||||
wadoUri,
|
||||
isOverlayDisplaySet: true,
|
||||
label: SeriesDescription || `${i18n.t('Series')} ${SeriesNumber} - ${i18n.t('SEG')}`,
|
||||
};
|
||||
|
||||
const referencedSeriesSequence = instance.ReferencedSeriesSequence;
|
||||
@@ -179,16 +177,12 @@ async function _loadSegments({
|
||||
throw new Error('referencedDisplaySet is missing for SEG');
|
||||
}
|
||||
|
||||
let { imageIds } = referencedDisplaySet;
|
||||
|
||||
if (!imageIds) {
|
||||
// try images
|
||||
const { images } = referencedDisplaySet;
|
||||
imageIds = images.map(image => image.imageId);
|
||||
}
|
||||
const { instances: images } = referencedDisplaySet;
|
||||
const imageIds = images.map(({ imageId }) => imageId);
|
||||
|
||||
// Todo: what should be defaults here
|
||||
const tolerance = 0.001;
|
||||
const skipOverlapping = true;
|
||||
eventTarget.addEventListener(Enums.Events.SEGMENTATION_LOAD_PROGRESS, evt => {
|
||||
const { percentComplete } = evt.detail;
|
||||
segmentationService._broadcastEvent(segmentationService.EVENTS.SEGMENT_LOADING_COMPLETE, {
|
||||
@@ -196,10 +190,11 @@ async function _loadSegments({
|
||||
});
|
||||
});
|
||||
|
||||
const results = await adaptersSEG.Cornerstone3D.Segmentation.createFromDICOMSegBuffer(
|
||||
const results = await adaptersSEG.Cornerstone3D.Segmentation.generateToolState(
|
||||
imageIds,
|
||||
arrayBuffer,
|
||||
{ metadataProvider: metaData, tolerance }
|
||||
metaData,
|
||||
{ skipOverlapping, tolerance, eventTarget, triggerEvent }
|
||||
);
|
||||
|
||||
let usedRecommendedDisplayCIELabValue = true;
|
||||
@@ -216,6 +211,15 @@ async function _loadSegments({
|
||||
}
|
||||
});
|
||||
|
||||
if (results.overlappingSegments) {
|
||||
uiNotificationService.show({
|
||||
title: 'Overlapping Segments',
|
||||
message:
|
||||
'Unsupported overlapping segments detected, segmentation rendering results may be incorrect.',
|
||||
type: 'warning',
|
||||
});
|
||||
}
|
||||
|
||||
if (!usedRecommendedDisplayCIELabValue) {
|
||||
// Display a notification about the non-utilization of RecommendedDisplayCIELabValue
|
||||
uiNotificationService.show({
|
||||
@@ -234,8 +238,7 @@ function _segmentationExists(segDisplaySet) {
|
||||
return cstSegmentation.state.getSegmentation(segDisplaySet.displaySetInstanceUID);
|
||||
}
|
||||
|
||||
function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams) {
|
||||
const { servicesManager, extensionManager } = params;
|
||||
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
|
||||
const getDisplaySetsFromSeries = instances => {
|
||||
return _getDisplaySetsFromSeries(instances, servicesManager, extensionManager);
|
||||
};
|
||||
|
||||
@@ -1,15 +1,6 @@
|
||||
export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
const { segmentationService, toolbarService, toolGroupService } = servicesManager.services;
|
||||
return [
|
||||
{
|
||||
name: 'evaluate.cornerstone.hasSegmentation',
|
||||
evaluate: ({ viewportId }) => {
|
||||
const segmentations = segmentationService.getSegmentationRepresentations(viewportId);
|
||||
return {
|
||||
disabled: !segmentations?.length,
|
||||
};
|
||||
},
|
||||
},
|
||||
{
|
||||
name: 'evaluate.cornerstone.segmentation',
|
||||
evaluate: ({ viewportId, button, toolNames, disabledText }) => {
|
||||
@@ -21,39 +12,27 @@ export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
if (!segmentations?.length) {
|
||||
return {
|
||||
disabled: true,
|
||||
className: '!text-common-bright !bg-black opacity-50',
|
||||
disabledText: disabledText ?? 'No segmentations available',
|
||||
};
|
||||
}
|
||||
|
||||
const activeSegmentation = segmentationService.getActiveSegmentation(viewportId);
|
||||
if (!Object.keys(activeSegmentation.segments).length) {
|
||||
return {
|
||||
disabled: true,
|
||||
disabledText: 'Add segment to enable this tool',
|
||||
};
|
||||
}
|
||||
|
||||
const toolGroup = toolGroupService.getToolGroupForViewport(viewportId);
|
||||
|
||||
if (!toolGroup) {
|
||||
return {
|
||||
disabled: true,
|
||||
className: '!text-common-bright ohif-disabled',
|
||||
disabledText: disabledText ?? 'Not available on the current viewport',
|
||||
};
|
||||
}
|
||||
|
||||
if (!toolNames) {
|
||||
return {
|
||||
disabled: false,
|
||||
// isActive: false,
|
||||
};
|
||||
}
|
||||
|
||||
const toolName = toolbarService.getToolNameForButton(button);
|
||||
|
||||
if (!toolGroup.hasTool(toolName) && !toolNames) {
|
||||
return {
|
||||
disabled: true,
|
||||
className: '!text-common-bright ohif-disabled',
|
||||
disabledText: disabledText ?? 'Not available on the current viewport',
|
||||
};
|
||||
}
|
||||
@@ -64,6 +43,12 @@ export function getToolbarModule({ servicesManager }: withAppTypes) {
|
||||
|
||||
return {
|
||||
disabled: false,
|
||||
className: isPrimaryActive
|
||||
? '!text-black !bg-primary-light hover:bg-primary-light hover-text-black hover:cursor-pointer'
|
||||
: '!text-common-bright !bg-black hover:bg-primary-light hover:cursor-pointer hover:text-black',
|
||||
// Todo: isActive right now is used for nested buttons where the primary
|
||||
// button needs to be fully rounded (vs partial rounded) when active
|
||||
// otherwise it does not have any other use
|
||||
isActive: isPrimaryActive,
|
||||
};
|
||||
},
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
function createSEGToolGroupAndAddTools(ToolGroupService, customizationService, toolGroupId) {
|
||||
const tools = customizationService.getCustomization('cornerstone.overlayViewportTools');
|
||||
const { tools } = customizationService.get('cornerstone.overlayViewportTools') ?? {};
|
||||
|
||||
return ToolGroupService.createToolGroupAndAddTools(toolGroupId, tools);
|
||||
}
|
||||
|
||||
@@ -1,4 +1,10 @@
|
||||
import { utils, Types } from '@ohif/extension-cornerstone';
|
||||
import { ButtonEnums } from '@ohif/ui';
|
||||
|
||||
const RESPONSE = {
|
||||
NO_NEVER: -1,
|
||||
CANCEL: 0,
|
||||
HYDRATE_SEG: 5,
|
||||
};
|
||||
|
||||
function promptHydrateSEG({
|
||||
servicesManager,
|
||||
@@ -6,20 +12,71 @@ function promptHydrateSEG({
|
||||
viewportId,
|
||||
preHydrateCallbacks,
|
||||
hydrateCallback,
|
||||
}: {
|
||||
servicesManager: AppTypes.ServicesManager;
|
||||
segDisplaySet: AppTypes.DisplaySet;
|
||||
viewportId: string;
|
||||
preHydrateCallbacks?: Types.HydrationCallback[];
|
||||
hydrateCallback: Types.HydrationCallback;
|
||||
}) {
|
||||
return utils.promptHydrationDialog({
|
||||
servicesManager,
|
||||
viewportId,
|
||||
displaySet: segDisplaySet as AppTypes.DisplaySet,
|
||||
preHydrateCallbacks,
|
||||
hydrateCallback,
|
||||
type: 'SEG',
|
||||
}: withAppTypes) {
|
||||
const { uiViewportDialogService } = servicesManager.services;
|
||||
const extensionManager = servicesManager._extensionManager;
|
||||
const appConfig = extensionManager._appConfig;
|
||||
|
||||
return new Promise(async function (resolve, reject) {
|
||||
const promptResult = appConfig?.disableConfirmationPrompts
|
||||
? RESPONSE.HYDRATE_SEG
|
||||
: await _askHydrate(uiViewportDialogService, viewportId);
|
||||
|
||||
if (promptResult === RESPONSE.HYDRATE_SEG) {
|
||||
preHydrateCallbacks?.forEach(callback => {
|
||||
callback();
|
||||
});
|
||||
|
||||
window.setTimeout(async () => {
|
||||
const isHydrated = await hydrateCallback({
|
||||
segDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
|
||||
resolve(isHydrated);
|
||||
}, 0);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
function _askHydrate(uiViewportDialogService, viewportId) {
|
||||
return new Promise(function (resolve, reject) {
|
||||
const message = 'Do you want to open this Segmentation?';
|
||||
const actions = [
|
||||
{
|
||||
id: 'no-hydrate',
|
||||
type: ButtonEnums.type.secondary,
|
||||
text: 'No',
|
||||
value: RESPONSE.CANCEL,
|
||||
},
|
||||
{
|
||||
id: 'yes-hydrate',
|
||||
type: ButtonEnums.type.primary,
|
||||
text: 'Yes',
|
||||
value: RESPONSE.HYDRATE_SEG,
|
||||
},
|
||||
];
|
||||
const onSubmit = result => {
|
||||
uiViewportDialogService.hide();
|
||||
resolve(result);
|
||||
};
|
||||
|
||||
uiViewportDialogService.show({
|
||||
viewportId,
|
||||
type: 'info',
|
||||
message,
|
||||
actions,
|
||||
onSubmit,
|
||||
onOutsideClick: () => {
|
||||
uiViewportDialogService.hide();
|
||||
resolve(RESPONSE.CANCEL);
|
||||
},
|
||||
onKeyPress: event => {
|
||||
if (event.key === 'Enter') {
|
||||
onSubmit(RESPONSE.HYDRATE_SEG);
|
||||
}
|
||||
},
|
||||
});
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
@@ -1,28 +1,33 @@
|
||||
import React, { useCallback, useEffect, useRef, useState } from 'react';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { LoadingIndicatorTotalPercent, useViewportGrid, ViewportActionArrows } from '@ohif/ui';
|
||||
import createSEGToolGroupAndAddTools from '../utils/initSEGToolGroup';
|
||||
import promptHydrateSEG from '../utils/promptHydrateSEG';
|
||||
import { usePositionPresentationStore, OHIFCornerstoneViewport } from '@ohif/extension-cornerstone';
|
||||
import _getStatusComponent from './_getStatusComponent';
|
||||
import { SegmentationRepresentations } from '@cornerstonejs/tools/enums';
|
||||
import { useSystem } from '@ohif/core/src/contextProviders/SystemProvider';
|
||||
|
||||
const SEG_TOOLGROUP_BASE_NAME = 'SEGToolGroup';
|
||||
|
||||
function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
const { servicesManager, commandsManager } = useSystem();
|
||||
const { children, displaySets, viewportOptions } = props as {
|
||||
children: React.ReactNode;
|
||||
displaySets: AppTypes.DisplaySet[];
|
||||
viewportOptions: AppTypes.ViewportOptions;
|
||||
};
|
||||
const {
|
||||
children,
|
||||
displaySets,
|
||||
viewportOptions,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
commandsManager,
|
||||
} = props;
|
||||
|
||||
const { t } = useTranslation('SEGViewport');
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
|
||||
const { displaySetService, toolGroupService, segmentationService, customizationService } =
|
||||
servicesManager.services;
|
||||
|
||||
const LoadingIndicatorTotalPercent = customizationService.getCustomization(
|
||||
'ui.loadingIndicatorTotalPercent'
|
||||
);
|
||||
const {
|
||||
displaySetService,
|
||||
toolGroupService,
|
||||
segmentationService,
|
||||
customizationService,
|
||||
viewportActionCornersService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const toolGroupId = `${SEG_TOOLGROUP_BASE_NAME}-${viewportId}`;
|
||||
|
||||
@@ -35,14 +40,16 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
const [viewportGrid, viewportGridService] = useViewportGrid();
|
||||
|
||||
// States
|
||||
const { setPositionPresentation } = usePositionPresentationStore();
|
||||
const [selectedSegment, setSelectedSegment] = useState(1);
|
||||
|
||||
// Hydration means that the SEG is opened and segments are loaded into the
|
||||
// segmentation panel, and SEG is also rendered on any viewport that is in the
|
||||
// same frameOfReferenceUID as the referencedSeriesUID of the SEG. However,
|
||||
// loading basically means SEG loading over network and bit unpacking of the
|
||||
// SEG data.
|
||||
const [isHydrated, setIsHydrated] = useState(segDisplaySet.isHydrated);
|
||||
const [segIsLoading, setSegIsLoading] = useState(!segDisplaySet.isLoaded);
|
||||
const [element, setElement] = useState(null);
|
||||
const [processingProgress, setProcessingProgress] = useState({
|
||||
percentComplete: null,
|
||||
totalSegments: null,
|
||||
@@ -67,10 +74,36 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
displaySet: referencedDisplaySet,
|
||||
metadata: referencedDisplaySetMetadata,
|
||||
};
|
||||
/**
|
||||
* OnElementEnabled callback which is called after the cornerstoneExtension
|
||||
* has enabled the element. Note: we delegate all the image rendering to
|
||||
* cornerstoneExtension, so we don't need to do anything here regarding
|
||||
* the image rendering, element enabling etc.
|
||||
*/
|
||||
const onElementEnabled = evt => {
|
||||
setElement(evt.detail.element);
|
||||
};
|
||||
|
||||
const onElementDisabled = () => {
|
||||
setElement(null);
|
||||
};
|
||||
|
||||
const storePresentationState = useCallback(() => {
|
||||
viewportGrid?.viewports.forEach(({ viewportId }) => {
|
||||
commandsManager.runCommand('storePresentation', {
|
||||
viewportId,
|
||||
});
|
||||
});
|
||||
}, [viewportGrid]);
|
||||
|
||||
const getCornerstoneViewport = useCallback(() => {
|
||||
const { component: Component } = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.viewportModule.cornerstone'
|
||||
);
|
||||
|
||||
// Todo: jump to the center of the first segment
|
||||
return (
|
||||
<OHIFCornerstoneViewport
|
||||
<Component
|
||||
{...props}
|
||||
displaySets={[segDisplaySet]}
|
||||
viewportOptions={{
|
||||
@@ -82,35 +115,78 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
}}
|
||||
onElementEnabled={evt => {
|
||||
props.onElementEnabled?.(evt);
|
||||
onElementEnabled(evt);
|
||||
}}
|
||||
/>
|
||||
onElementDisabled={onElementDisabled}
|
||||
></Component>
|
||||
);
|
||||
}, [viewportId, segDisplaySet, toolGroupId, props, viewportOptions]);
|
||||
}, [viewportId, segDisplaySet, toolGroupId]);
|
||||
|
||||
const onSegmentChange = useCallback(
|
||||
direction => {
|
||||
const segmentationId = segDisplaySet.displaySetInstanceUID;
|
||||
const segmentation = segmentationService.getSegmentation(segmentationId);
|
||||
|
||||
const { segments } = segmentation;
|
||||
|
||||
const numberOfSegments = Object.keys(segments).length;
|
||||
|
||||
let newSelectedSegmentIndex = selectedSegment + direction;
|
||||
|
||||
// Segment 0 is always background
|
||||
|
||||
if (newSelectedSegmentIndex > numberOfSegments - 1) {
|
||||
newSelectedSegmentIndex = 1;
|
||||
} else if (newSelectedSegmentIndex === 0) {
|
||||
newSelectedSegmentIndex = numberOfSegments - 1;
|
||||
}
|
||||
|
||||
segmentationService.jumpToSegmentCenter(segmentationId, newSelectedSegmentIndex, viewportId);
|
||||
setSelectedSegment(newSelectedSegmentIndex);
|
||||
},
|
||||
[selectedSegment]
|
||||
);
|
||||
|
||||
const hydrateSEG = useCallback(() => {
|
||||
// update the previously stored segmentationPresentation with the new viewportId
|
||||
// presentation so that when we put the referencedDisplaySet back in the viewport
|
||||
// it will have the correct segmentation representation hydrated
|
||||
commandsManager.runCommand('updateStoredSegmentationPresentation', {
|
||||
displaySet: segDisplaySet,
|
||||
type: SegmentationRepresentations.Labelmap,
|
||||
});
|
||||
|
||||
// update the previously stored positionPresentation with the new viewportId
|
||||
// presentation so that when we put the referencedDisplaySet back in the viewport
|
||||
// it will be in the correct position zoom and pan
|
||||
commandsManager.runCommand('updateStoredPositionPresentation', {
|
||||
viewportId,
|
||||
displaySetInstanceUID: referencedDisplaySet.displaySetInstanceUID,
|
||||
});
|
||||
|
||||
viewportGridService.setDisplaySetsForViewport({
|
||||
viewportId,
|
||||
displaySetInstanceUIDs: [referencedDisplaySet.displaySetInstanceUID],
|
||||
});
|
||||
}, [commandsManager, viewportId, referencedDisplaySet, segDisplaySet]);
|
||||
|
||||
useEffect(() => {
|
||||
if (segIsLoading) {
|
||||
return;
|
||||
}
|
||||
|
||||
// if not active viewport, return
|
||||
if (viewportId !== activeViewportId) {
|
||||
return;
|
||||
}
|
||||
|
||||
promptHydrateSEG({
|
||||
servicesManager,
|
||||
viewportId,
|
||||
segDisplaySet,
|
||||
hydrateCallback: async () => {
|
||||
await commandsManager.runCommand('hydrateSecondaryDisplaySet', {
|
||||
displaySet: segDisplaySet,
|
||||
viewportId,
|
||||
});
|
||||
|
||||
return true;
|
||||
},
|
||||
preHydrateCallbacks: [storePresentationState],
|
||||
hydrateCallback: hydrateSEG,
|
||||
}).then(isHydrated => {
|
||||
if (isHydrated) {
|
||||
setIsHydrated(true);
|
||||
}
|
||||
});
|
||||
}, [servicesManager, viewportId, segDisplaySet, segIsLoading, commandsManager, activeViewportId]);
|
||||
}, [servicesManager, viewportId, segDisplaySet, segIsLoading, hydrateSEG]);
|
||||
|
||||
useEffect(() => {
|
||||
// on new seg display set, remove all segmentations from all viewports
|
||||
@@ -122,17 +198,6 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
if (evt.segDisplaySet.displaySetInstanceUID === segDisplaySet.displaySetInstanceUID) {
|
||||
setSegIsLoading(false);
|
||||
}
|
||||
|
||||
if (segDisplaySet?.firstSegmentedSliceImageId && viewportOptions?.presentationIds) {
|
||||
const { firstSegmentedSliceImageId } = segDisplaySet;
|
||||
const { presentationIds } = viewportOptions;
|
||||
|
||||
setPositionPresentation(presentationIds.positionPresentationId, {
|
||||
viewReference: {
|
||||
referencedImageId: firstSegmentedSliceImageId,
|
||||
},
|
||||
});
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
@@ -211,6 +276,54 @@ function OHIFCornerstoneSEGViewport(props: withAppTypes) {
|
||||
};
|
||||
}, []);
|
||||
|
||||
const onStatusClick = useCallback(async () => {
|
||||
// Before hydrating a SEG and make it added to all viewports in the grid
|
||||
// that share the same frameOfReferenceUID, we need to store the viewport grid
|
||||
// presentation state, so that we can restore it after hydrating the SEG. This is
|
||||
// required if the user has changed the viewport (other viewport than SEG viewport)
|
||||
// presentation state (w/l and invert) and then opens the SEG. If we don't store
|
||||
// the presentation state, the viewport will be reset to the default presentation
|
||||
storePresentationState();
|
||||
hydrateSEG();
|
||||
}, [storePresentationState, hydrateSEG]);
|
||||
|
||||
useEffect(() => {
|
||||
viewportActionCornersService.addComponents([
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportStatusComponent',
|
||||
component: _getStatusComponent({
|
||||
isHydrated,
|
||||
onStatusClick,
|
||||
}),
|
||||
indexPriority: -100,
|
||||
location: viewportActionCornersService.LOCATIONS.topLeft,
|
||||
},
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportActionArrowsComponent',
|
||||
component: (
|
||||
<ViewportActionArrows
|
||||
key="actionArrows"
|
||||
onArrowsClick={onSegmentChange}
|
||||
className={
|
||||
viewportId === activeViewportId ? 'visible' : 'invisible group-hover/pane:visible'
|
||||
}
|
||||
></ViewportActionArrows>
|
||||
),
|
||||
indexPriority: 0,
|
||||
location: viewportActionCornersService.LOCATIONS.topRight,
|
||||
},
|
||||
]);
|
||||
}, [
|
||||
activeViewportId,
|
||||
isHydrated,
|
||||
onSegmentChange,
|
||||
onStatusClick,
|
||||
viewportActionCornersService,
|
||||
viewportId,
|
||||
]);
|
||||
|
||||
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
let childrenWithProps = null;
|
||||
|
||||
|
||||
@@ -0,0 +1,62 @@
|
||||
import React from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { Icon, Tooltip } from '@ohif/ui';
|
||||
|
||||
export default function _getStatusComponent({ isHydrated, onStatusClick }) {
|
||||
let ToolTipMessage = null;
|
||||
let StatusIcon = null;
|
||||
|
||||
switch (isHydrated) {
|
||||
case true:
|
||||
StatusIcon = () => <Icon name="status-alert" />;
|
||||
|
||||
ToolTipMessage = () => <div>This Segmentation is loaded in the segmentation panel</div>;
|
||||
break;
|
||||
case false:
|
||||
StatusIcon = () => (
|
||||
<Icon
|
||||
className="text-aqua-pale"
|
||||
name="status-untracked"
|
||||
/>
|
||||
);
|
||||
|
||||
ToolTipMessage = () => <div>Click LOAD to load segmentation.</div>;
|
||||
}
|
||||
|
||||
const StatusArea = () => {
|
||||
const { t } = useTranslation('Common');
|
||||
const loadStr = t('LOAD');
|
||||
|
||||
return (
|
||||
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
|
||||
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
|
||||
<StatusIcon />
|
||||
<span className="ml-1">SEG</span>
|
||||
</div>
|
||||
{!isHydrated && (
|
||||
<div
|
||||
className="bg-primary-main hover:bg-primary-light ml-1 cursor-pointer rounded px-1.5 hover:text-black"
|
||||
// Using onMouseUp here because onClick is not working when the viewport is not active and is styled with pointer-events:none
|
||||
onMouseUp={onStatusClick}
|
||||
>
|
||||
{loadStr}
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
{ToolTipMessage && (
|
||||
<Tooltip
|
||||
content={<ToolTipMessage />}
|
||||
position="bottom-left"
|
||||
>
|
||||
<StatusArea />
|
||||
</Tooltip>
|
||||
)}
|
||||
{!ToolTipMessage && <StatusArea />}
|
||||
</>
|
||||
);
|
||||
}
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-sr",
|
||||
"version": "3.11.0-beta.52",
|
||||
"version": "3.9.2",
|
||||
"description": "OHIF extension for an SR Cornerstone Viewport",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -34,10 +34,10 @@
|
||||
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.11.0-beta.52",
|
||||
"@ohif/extension-cornerstone": "3.11.0-beta.52",
|
||||
"@ohif/extension-measurement-tracking": "3.11.0-beta.52",
|
||||
"@ohif/ui": "3.11.0-beta.52",
|
||||
"@ohif/core": "3.9.2",
|
||||
"@ohif/extension-cornerstone": "3.9.2",
|
||||
"@ohif/extension-measurement-tracking": "3.9.2",
|
||||
"@ohif/ui": "3.9.2",
|
||||
"dcmjs": "*",
|
||||
"dicom-parser": "^1.8.9",
|
||||
"hammerjs": "^2.0.8",
|
||||
@@ -46,9 +46,9 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^3.15.6",
|
||||
"@cornerstonejs/core": "^3.15.6",
|
||||
"@cornerstonejs/tools": "^3.15.6",
|
||||
"@cornerstonejs/adapters": "^2.2.20",
|
||||
"@cornerstonejs/core": "^2.2.20",
|
||||
"@cornerstonejs/tools": "^2.2.20",
|
||||
"classnames": "^2.3.2"
|
||||
}
|
||||
}
|
||||
@@ -5,28 +5,19 @@ import dcmjs from 'dcmjs';
|
||||
import { adaptersSR } from '@cornerstonejs/adapters';
|
||||
|
||||
import getFilteredCornerstoneToolState from './utils/getFilteredCornerstoneToolState';
|
||||
import hydrateStructuredReport from './utils/hydrateStructuredReport';
|
||||
|
||||
const { MeasurementReport } = adaptersSR.Cornerstone3D;
|
||||
const { log } = OHIF;
|
||||
|
||||
interface Options {
|
||||
SeriesDescription?: string;
|
||||
SeriesInstanceUID?: string;
|
||||
SeriesNumber?: number;
|
||||
InstanceNumber?: number;
|
||||
SeriesDate?: string;
|
||||
SeriesTime?: string;
|
||||
}
|
||||
|
||||
/**
|
||||
*
|
||||
* @param measurementData An array of measurements from the measurements service
|
||||
* that you wish to serialize.
|
||||
* @param additionalFindingTypes toolTypes that should be stored with labels as Findings
|
||||
* @param options Naturalized DICOM JSON headers to merge into the displaySet.
|
||||
*
|
||||
*/
|
||||
const _generateReport = (measurementData, additionalFindingTypes, options: Options = {}) => {
|
||||
const _generateReport = (measurementData, additionalFindingTypes, options = {}) => {
|
||||
const filteredToolState = getFilteredCornerstoneToolState(
|
||||
measurementData,
|
||||
additionalFindingTypes
|
||||
@@ -46,37 +37,13 @@ const _generateReport = (measurementData, additionalFindingTypes, options: Optio
|
||||
if (typeof dataset.SpecificCharacterSet === 'undefined') {
|
||||
dataset.SpecificCharacterSet = 'ISO_IR 192';
|
||||
}
|
||||
|
||||
dataset.InstanceNumber = options.InstanceNumber ?? 1;
|
||||
|
||||
return dataset;
|
||||
};
|
||||
|
||||
const commandsModule = (props: withAppTypes) => {
|
||||
const { servicesManager, extensionManager, commandsManager } = props;
|
||||
const { customizationService, viewportGridService, displaySetService } = servicesManager.services;
|
||||
|
||||
const { servicesManager } = props;
|
||||
const { customizationService } = servicesManager.services;
|
||||
const actions = {
|
||||
changeColorMeasurement: ({ uid }) => {
|
||||
// When this gets supported, it probably belongs in cornerstone, not sr
|
||||
throw new Error('Unsupported operation: changeColorMeasurement');
|
||||
// const { color } = measurementService.getMeasurement(uid);
|
||||
// const rgbaColor = {
|
||||
// r: color[0],
|
||||
// g: color[1],
|
||||
// b: color[2],
|
||||
// a: color[3] / 255.0,
|
||||
// };
|
||||
// colorPickerDialog(uiDialogService, rgbaColor, (newRgbaColor, actionId) => {
|
||||
// if (actionId === 'cancel') {
|
||||
// return;
|
||||
// }
|
||||
|
||||
// const color = [newRgbaColor.r, newRgbaColor.g, newRgbaColor.b, newRgbaColor.a * 255.0];
|
||||
// segmentationService.setSegmentColor(viewportId, segmentationId, segmentIndex, color);
|
||||
// });
|
||||
},
|
||||
|
||||
/**
|
||||
*
|
||||
* @param measurementData An array of measurements from the measurements service
|
||||
@@ -86,7 +53,7 @@ const commandsModule = (props: withAppTypes) => {
|
||||
* that you wish to serialize.
|
||||
*/
|
||||
downloadReport: ({ measurementData, additionalFindingTypes, options = {} }) => {
|
||||
const srDataset = _generateReport(measurementData, additionalFindingTypes, options);
|
||||
const srDataset = actions.generateReport(measurementData, additionalFindingTypes, options);
|
||||
const reportBlob = dcmjs.data.datasetToBlob(srDataset);
|
||||
|
||||
//Create a URL for the binary.
|
||||
@@ -130,11 +97,12 @@ const commandsModule = (props: withAppTypes) => {
|
||||
throw new Error('Invalid report, no content');
|
||||
}
|
||||
|
||||
const onBeforeDicomStore = customizationService.getCustomization('onBeforeDicomStore');
|
||||
const onBeforeDicomStore =
|
||||
customizationService.getModeCustomization('onBeforeDicomStore')?.value;
|
||||
|
||||
let dicomDict;
|
||||
if (typeof onBeforeDicomStore === 'function') {
|
||||
dicomDict = onBeforeDicomStore({ dicomDict, measurementData, naturalizedReport });
|
||||
dicomDict = onBeforeDicomStore({ measurementData, naturalizedReport });
|
||||
}
|
||||
|
||||
await dataSource.store.dicom(naturalizedReport, null, dicomDict);
|
||||
@@ -155,23 +123,15 @@ const commandsModule = (props: withAppTypes) => {
|
||||
throw new Error(error.message || 'Error while saving the measurements.');
|
||||
}
|
||||
},
|
||||
|
||||
/**
|
||||
* Loads measurements by hydrating and loading the SR for the given display set instance UID
|
||||
* and displays it in the active viewport.
|
||||
*/
|
||||
hydrateStructuredReport: ({ displaySetInstanceUID }) => {
|
||||
return hydrateStructuredReport(
|
||||
{ servicesManager, extensionManager, commandsManager },
|
||||
displaySetInstanceUID
|
||||
);
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
downloadReport: actions.downloadReport,
|
||||
storeMeasurements: actions.storeMeasurements,
|
||||
hydrateStructuredReport: actions.hydrateStructuredReport,
|
||||
downloadReport: {
|
||||
commandFn: actions.downloadReport,
|
||||
},
|
||||
storeMeasurements: {
|
||||
commandFn: actions.storeMeasurements,
|
||||
},
|
||||
};
|
||||
|
||||
return {
|
||||
|
||||
+277
-25
@@ -1,24 +1,38 @@
|
||||
import PropTypes from 'prop-types';
|
||||
import React, { useCallback, useEffect, useState } from 'react';
|
||||
import React, { useCallback, useContext, useEffect, useState } from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { ExtensionManager } from '@ohif/core';
|
||||
|
||||
import { setTrackingUniqueIdentifiersForElement } from '../tools/modules/dicomSRModule';
|
||||
|
||||
import { Icon, Tooltip, useViewportGrid, ViewportActionArrows } from '@ohif/ui';
|
||||
import hydrateStructuredReport from '../utils/hydrateStructuredReport';
|
||||
import { useAppConfig } from '@state';
|
||||
import createReferencedImageDisplaySet from '../utils/createReferencedImageDisplaySet';
|
||||
import { usePositionPresentationStore, OHIFCornerstoneViewport } from '@ohif/extension-cornerstone';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import { useSystem } from '@ohif/core/src/contextProviders/SystemProvider';
|
||||
|
||||
const MEASUREMENT_TRACKING_EXTENSION_ID = '@ohif/extension-measurement-tracking';
|
||||
|
||||
const SR_TOOLGROUP_BASE_NAME = 'SRToolGroup';
|
||||
|
||||
function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
const { servicesManager } = useSystem();
|
||||
const { children, dataSource, displaySets, viewportOptions } = props as {
|
||||
children: React.ReactNode;
|
||||
dataSource: unknown;
|
||||
displaySets: AppTypes.DisplaySet[];
|
||||
viewportOptions: AppTypes.ViewportOptions;
|
||||
};
|
||||
function OHIFCornerstoneSRMeasurementViewport(props: withAppTypes) {
|
||||
const {
|
||||
commandsManager,
|
||||
children,
|
||||
dataSource,
|
||||
displaySets,
|
||||
viewportOptions,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
} = props;
|
||||
|
||||
const { displaySetService } = servicesManager.services;
|
||||
const [appConfig] = useAppConfig();
|
||||
|
||||
const {
|
||||
displaySetService,
|
||||
cornerstoneViewportService,
|
||||
measurementService,
|
||||
viewportActionCornersService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
|
||||
@@ -29,15 +43,66 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
|
||||
const srDisplaySet = displaySets[0];
|
||||
|
||||
const { setPositionPresentation } = usePositionPresentationStore();
|
||||
|
||||
const [viewportGrid, viewportGridService] = useViewportGrid();
|
||||
const [measurementSelected, setMeasurementSelected] = useState(0);
|
||||
const [measurementCount, setMeasurementCount] = useState(1);
|
||||
const [activeImageDisplaySetData, setActiveImageDisplaySetData] = useState(null);
|
||||
const [referencedDisplaySetMetadata, setReferencedDisplaySetMetadata] = useState(null);
|
||||
const [element, setElement] = useState(null);
|
||||
const { viewports, activeViewportId } = viewportGrid;
|
||||
|
||||
const { t } = useTranslation('Common');
|
||||
|
||||
// Optional hook into tracking extension, if present.
|
||||
let trackedMeasurements;
|
||||
let sendTrackedMeasurementsEvent;
|
||||
|
||||
const hasMeasurementTrackingExtension = extensionManager.registeredExtensionIds.includes(
|
||||
MEASUREMENT_TRACKING_EXTENSION_ID
|
||||
);
|
||||
|
||||
if (hasMeasurementTrackingExtension) {
|
||||
const contextModule = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-measurement-tracking.contextModule.TrackedMeasurementsContext'
|
||||
);
|
||||
|
||||
const tracked = useContext(contextModule.context);
|
||||
trackedMeasurements = tracked?.[0];
|
||||
sendTrackedMeasurementsEvent = tracked?.[1];
|
||||
}
|
||||
|
||||
if (!sendTrackedMeasurementsEvent) {
|
||||
// if no panels from measurement-tracking extension is used, this code will run
|
||||
trackedMeasurements = null;
|
||||
sendTrackedMeasurementsEvent = (eventName, { displaySetInstanceUID }) => {
|
||||
measurementService.clearMeasurements();
|
||||
const { SeriesInstanceUIDs } = hydrateStructuredReport(
|
||||
{ servicesManager, extensionManager, appConfig },
|
||||
displaySetInstanceUID
|
||||
);
|
||||
|
||||
const displaySets = displaySetService.getDisplaySetsForSeries(SeriesInstanceUIDs[0]);
|
||||
if (displaySets.length) {
|
||||
viewportGridService.setDisplaySetsForViewports([
|
||||
{
|
||||
viewportId: activeViewportId,
|
||||
displaySetInstanceUIDs: [displaySets[0].displaySetInstanceUID],
|
||||
},
|
||||
]);
|
||||
}
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
* Todo: what is this, not sure what it does regarding the react aspect,
|
||||
* it is updating a local variable? which is not state.
|
||||
*/
|
||||
const [isLocked, setIsLocked] = useState(trackedMeasurements?.context?.trackedSeries?.length > 0);
|
||||
/**
|
||||
* Store the tracking identifiers per viewport in order to be able to
|
||||
* show the SR measurements on the referenced image on the correct viewport,
|
||||
* when multiple viewports are used.
|
||||
*/
|
||||
const setTrackingIdentifiers = useCallback(
|
||||
measurementSelected => {
|
||||
const { measurements } = srDisplaySet;
|
||||
@@ -75,6 +140,10 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
console.warn('More than one SOPClassUID in the same series is not yet supported.');
|
||||
}
|
||||
|
||||
// if (!srDisplaySet.measurements || !srDisplaySet.measurements.length) {
|
||||
// return;
|
||||
// }
|
||||
|
||||
_getViewportReferencedDisplaySetData(
|
||||
srDisplaySet,
|
||||
newMeasurementSelected,
|
||||
@@ -85,17 +154,33 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
}
|
||||
|
||||
setMeasurementSelected(newMeasurementSelected);
|
||||
|
||||
setActiveImageDisplaySetData(referencedDisplaySet);
|
||||
setReferencedDisplaySetMetadata(referencedDisplaySetMetadata);
|
||||
|
||||
const { presentationIds } = viewportOptions;
|
||||
const measurement = srDisplaySet.measurements[newMeasurementSelected];
|
||||
setPositionPresentation(presentationIds.positionPresentationId, {
|
||||
viewReference: {
|
||||
referencedImageId: measurement.imageId,
|
||||
},
|
||||
});
|
||||
if (
|
||||
referencedDisplaySet.displaySetInstanceUID ===
|
||||
activeImageDisplaySetData?.displaySetInstanceUID
|
||||
) {
|
||||
const { measurements } = srDisplaySet;
|
||||
|
||||
// it means that we have a new referenced display set, and the
|
||||
// imageIdIndex will handle it by updating the viewport, but if they
|
||||
// are the same we just need to use measurementService to jump to the
|
||||
// new measurement
|
||||
const csViewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
|
||||
if (!csViewport) {
|
||||
return;
|
||||
}
|
||||
|
||||
const imageIds = csViewport.getImageIds();
|
||||
|
||||
const imageIdIndex = imageIds.indexOf(measurements[newMeasurementSelected].imageId);
|
||||
|
||||
if (imageIdIndex !== -1) {
|
||||
csViewport.setImageIdIndex(imageIdIndex);
|
||||
}
|
||||
}
|
||||
});
|
||||
},
|
||||
[dataSource, srDisplaySet, activeImageDisplaySetData, viewportId]
|
||||
@@ -106,6 +191,10 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
return null;
|
||||
}
|
||||
|
||||
const { component: Component } = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.viewportModule.cornerstone'
|
||||
);
|
||||
|
||||
const { measurements } = srDisplaySet;
|
||||
const measurement = measurements[measurementSelected];
|
||||
|
||||
@@ -113,8 +202,12 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
return null;
|
||||
}
|
||||
|
||||
const initialImageIndex = activeImageDisplaySetData.images.findIndex(
|
||||
image => image.imageId === measurement.imageId
|
||||
);
|
||||
|
||||
return (
|
||||
<OHIFCornerstoneViewport
|
||||
<Component
|
||||
{...props}
|
||||
// should be passed second since we don't want SR displaySet to
|
||||
// override the activeImageDisplaySetData
|
||||
@@ -137,11 +230,29 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
props.onElementEnabled?.(evt);
|
||||
onElementEnabled(evt);
|
||||
}}
|
||||
initialImageIndex={initialImageIndex}
|
||||
isJumpToMeasurementDisabled={true}
|
||||
/>
|
||||
></Component>
|
||||
);
|
||||
}, [activeImageDisplaySetData, viewportId, measurementSelected]);
|
||||
|
||||
const onMeasurementChange = useCallback(
|
||||
direction => {
|
||||
let newMeasurementSelected = measurementSelected;
|
||||
|
||||
newMeasurementSelected += direction;
|
||||
if (newMeasurementSelected >= measurementCount) {
|
||||
newMeasurementSelected = 0;
|
||||
} else if (newMeasurementSelected < 0) {
|
||||
newMeasurementSelected = measurementCount - 1;
|
||||
}
|
||||
|
||||
setTrackingIdentifiers(newMeasurementSelected);
|
||||
updateViewport(newMeasurementSelected);
|
||||
},
|
||||
[measurementSelected, measurementCount, updateViewport, setTrackingIdentifiers]
|
||||
);
|
||||
|
||||
/**
|
||||
Cleanup the SR viewport when the viewport is destroyed
|
||||
*/
|
||||
@@ -176,6 +287,8 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
if (!srDisplaySet.isLoaded) {
|
||||
await srDisplaySet.load();
|
||||
}
|
||||
const numMeasurements = srDisplaySet.measurements.length;
|
||||
setMeasurementCount(numMeasurements);
|
||||
updateViewport(measurementSelected);
|
||||
};
|
||||
loadSR();
|
||||
@@ -198,6 +311,50 @@ function OHIFCornerstoneSRMeasurementViewport(props) {
|
||||
updateSR();
|
||||
}, [measurementSelected, element, setTrackingIdentifiers, srDisplaySet]);
|
||||
|
||||
useEffect(() => {
|
||||
setIsLocked(trackedMeasurements?.context?.trackedSeries?.length > 0);
|
||||
}, [trackedMeasurements]);
|
||||
|
||||
useEffect(() => {
|
||||
viewportActionCornersService.addComponents([
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportStatusComponent',
|
||||
component: _getStatusComponent({
|
||||
srDisplaySet,
|
||||
viewportId,
|
||||
isRehydratable: srDisplaySet.isRehydratable,
|
||||
isLocked,
|
||||
sendTrackedMeasurementsEvent,
|
||||
t,
|
||||
}),
|
||||
indexPriority: -100,
|
||||
location: viewportActionCornersService.LOCATIONS.topLeft,
|
||||
},
|
||||
{
|
||||
viewportId,
|
||||
id: 'viewportActionArrowsComponent',
|
||||
index: 0,
|
||||
component: (
|
||||
<ViewportActionArrows
|
||||
key="actionArrows"
|
||||
onArrowsClick={onMeasurementChange}
|
||||
></ViewportActionArrows>
|
||||
),
|
||||
indexPriority: 0,
|
||||
location: viewportActionCornersService.LOCATIONS.topRight,
|
||||
},
|
||||
]);
|
||||
}, [
|
||||
isLocked,
|
||||
onMeasurementChange,
|
||||
sendTrackedMeasurementsEvent,
|
||||
srDisplaySet,
|
||||
t,
|
||||
viewportActionCornersService,
|
||||
viewportId,
|
||||
]);
|
||||
|
||||
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
let childrenWithProps = null;
|
||||
|
||||
@@ -234,6 +391,8 @@ OHIFCornerstoneSRMeasurementViewport.propTypes = {
|
||||
children: PropTypes.node,
|
||||
viewportLabel: PropTypes.string,
|
||||
viewportOptions: PropTypes.object,
|
||||
servicesManager: PropTypes.object.isRequired,
|
||||
extensionManager: PropTypes.instanceOf(ExtensionManager).isRequired,
|
||||
};
|
||||
|
||||
async function _getViewportReferencedDisplaySetData(
|
||||
@@ -277,4 +436,97 @@ async function _getViewportReferencedDisplaySetData(
|
||||
return { referencedDisplaySetMetadata, referencedDisplaySet };
|
||||
}
|
||||
|
||||
function _getStatusComponent({
|
||||
srDisplaySet,
|
||||
viewportId,
|
||||
isRehydratable,
|
||||
isLocked,
|
||||
sendTrackedMeasurementsEvent,
|
||||
t,
|
||||
}) {
|
||||
const handleMouseUp = () => {
|
||||
sendTrackedMeasurementsEvent('HYDRATE_SR', {
|
||||
displaySetInstanceUID: srDisplaySet.displaySetInstanceUID,
|
||||
viewportId,
|
||||
});
|
||||
};
|
||||
|
||||
const loadStr = t('LOAD');
|
||||
|
||||
// 1 - Incompatible
|
||||
// 2 - Locked
|
||||
// 3 - Rehydratable / Open
|
||||
const state = isRehydratable && !isLocked ? 3 : isRehydratable && isLocked ? 2 : 1;
|
||||
let ToolTipMessage = null;
|
||||
let StatusIcon = null;
|
||||
|
||||
switch (state) {
|
||||
case 1:
|
||||
StatusIcon = () => <Icon name="status-alert" />;
|
||||
|
||||
ToolTipMessage = () => (
|
||||
<div>
|
||||
This structured report is not compatible
|
||||
<br />
|
||||
with this application.
|
||||
</div>
|
||||
);
|
||||
break;
|
||||
case 2:
|
||||
StatusIcon = () => <Icon name="status-locked" />;
|
||||
|
||||
ToolTipMessage = () => (
|
||||
<div>
|
||||
This structured report is currently read-only
|
||||
<br />
|
||||
because you are tracking measurements in
|
||||
<br />
|
||||
another viewport.
|
||||
</div>
|
||||
);
|
||||
break;
|
||||
case 3:
|
||||
StatusIcon = () => (
|
||||
<Icon
|
||||
className="text-aqua-pale"
|
||||
name="status-untracked"
|
||||
/>
|
||||
);
|
||||
|
||||
ToolTipMessage = () => <div>{`Click ${loadStr} to restore measurements.`}</div>;
|
||||
}
|
||||
|
||||
const StatusArea = () => (
|
||||
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
|
||||
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
|
||||
<StatusIcon />
|
||||
<span className="ml-1">SR</span>
|
||||
</div>
|
||||
{state === 3 && (
|
||||
<div
|
||||
className="bg-primary-main hover:bg-primary-light ml-1 cursor-pointer rounded px-1.5 hover:text-black"
|
||||
// Using onMouseUp here because onClick is not working when the viewport is not active and is styled with pointer-events:none
|
||||
onMouseUp={handleMouseUp}
|
||||
>
|
||||
{loadStr}
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
|
||||
return (
|
||||
<>
|
||||
{ToolTipMessage && (
|
||||
<Tooltip
|
||||
content={<ToolTipMessage />}
|
||||
position="bottom-left"
|
||||
>
|
||||
<StatusArea />
|
||||
</Tooltip>
|
||||
)}
|
||||
{!ToolTipMessage && <StatusArea />}
|
||||
</>
|
||||
);
|
||||
}
|
||||
|
||||
export default OHIFCornerstoneSRMeasurementViewport;
|
||||
@@ -1,5 +1,4 @@
|
||||
import { utils, classes, DisplaySetService, Types as OhifTypes } from '@ohif/core';
|
||||
import i18n from '@ohif/i18n';
|
||||
import { utils, classes, DisplaySetService, Types } from '@ohif/core';
|
||||
import { Enums as CSExtensionEnums } from '@ohif/extension-cornerstone';
|
||||
import { adaptersSR } from '@cornerstonejs/adapters';
|
||||
|
||||
@@ -91,7 +90,6 @@ function _getDisplaySetsFromSeries(
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
ConceptNameCodeSequence,
|
||||
SOPClassUID,
|
||||
} = instance;
|
||||
@@ -108,7 +106,6 @@ function _getDisplaySetsFromSeries(
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
@@ -123,7 +120,6 @@ function _getDisplaySetsFromSeries(
|
||||
sopClassUids,
|
||||
instance,
|
||||
addInstances,
|
||||
label: SeriesDescription || `${i18n.t('Series')} ${SeriesNumber} - ${i18n.t('SR')}`,
|
||||
};
|
||||
|
||||
displaySet.load = () => _load(displaySet, servicesManager, extensionManager);
|
||||
@@ -267,9 +263,9 @@ function _checkIfCanAddMeasurementsToDisplaySet(
|
||||
for (let j = unloadedMeasurements.length - 1; j >= 0; j--) {
|
||||
let measurement = unloadedMeasurements[j];
|
||||
|
||||
const onBeforeSRAddMeasurement = customizationService.getCustomization(
|
||||
const onBeforeSRAddMeasurement = customizationService.getModeCustomization(
|
||||
'onBeforeSRAddMeasurement'
|
||||
);
|
||||
)?.value;
|
||||
|
||||
if (typeof onBeforeSRAddMeasurement === 'function') {
|
||||
measurement = onBeforeSRAddMeasurement({
|
||||
@@ -356,8 +352,7 @@ function _measurementReferencesSOPInstanceUID(measurement, SOPInstanceUID, frame
|
||||
* @param {Object} options.extensionManager - The extension manager.
|
||||
* @returns {Array} An array containing the SOP class handler module.
|
||||
*/
|
||||
function getSopClassHandlerModule(params: OhifTypes.Extensions.ExtensionParams) {
|
||||
const { servicesManager, extensionManager } = params;
|
||||
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
|
||||
const getDisplaySetsFromSeries = instances => {
|
||||
return _getDisplaySetsFromSeries(instances, servicesManager, extensionManager);
|
||||
};
|
||||
|
||||
@@ -30,7 +30,6 @@ const dicomSRExtension = {
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id,
|
||||
|
||||
onModeEnter,
|
||||
|
||||
preRegistration,
|
||||
|
||||
@@ -77,4 +77,28 @@ export default function init({
|
||||
SRRectangleROI: dashedLine,
|
||||
global: {},
|
||||
});
|
||||
|
||||
measurementService.subscribe(
|
||||
MeasurementService.EVENTS.JUMP_TO_MEASUREMENT_LAYOUT,
|
||||
({ viewportId, measurement, isConsumed }) => {
|
||||
if (isConsumed) {
|
||||
return;
|
||||
}
|
||||
try {
|
||||
const currentViewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
const { viewPlaneNormal } = currentViewport.getCamera();
|
||||
const referencedImageId = csToolsUtils.getClosestImageIdForStackViewport(
|
||||
currentViewport as StackViewport,
|
||||
measurement.points[0],
|
||||
viewPlaneNormal
|
||||
);
|
||||
const imageIndex = (currentViewport as StackViewport)
|
||||
.getImageIds()
|
||||
.indexOf(referencedImageId);
|
||||
csUtils.jumpToSlice(currentViewport.element, { imageIndex });
|
||||
} catch (error) {
|
||||
console.warn('Unable to jump to image based on measurement coordinate', error);
|
||||
}
|
||||
}
|
||||
);
|
||||
}
|
||||
File renamed without changes.
@@ -63,4 +63,5 @@ export default function addSRAnnotation(measurement, imageId, frameNumber) {
|
||||
* was not triggering annotation_added events.
|
||||
*/
|
||||
annotation.state.addAnnotation(SRAnnotation);
|
||||
console.debug('Adding SR annotation:', SRAnnotation);
|
||||
}
|
||||
@@ -25,7 +25,7 @@ const contentItemFormatters = {
|
||||
return `${NumericValue} ${CodeValue}`;
|
||||
},
|
||||
PNAME: contentItem => {
|
||||
const personName = contentItem.PersonName?.[0];
|
||||
const personName = contentItem.PersonName?.[0]?.Alphabetic;
|
||||
return personName ? utils.formatPN(personName) : undefined;
|
||||
},
|
||||
DATE: contentItem => {
|
||||
|
||||
@@ -41,14 +41,22 @@ const convertSites = (codingValues, sites) => {
|
||||
*
|
||||
*/
|
||||
export default function hydrateStructuredReport(
|
||||
{ servicesManager, extensionManager, commandsManager }: withAppTypes,
|
||||
{ servicesManager, extensionManager, appConfig }: withAppTypes,
|
||||
displaySetInstanceUID
|
||||
) {
|
||||
const annotationManager = CsAnnotation.state.getAnnotationManager();
|
||||
const dataSource = extensionManager.getActiveDataSource()[0];
|
||||
const { measurementService, displaySetService, customizationService } = servicesManager.services;
|
||||
|
||||
const codingValues = customizationService.getCustomization('codingValues');
|
||||
const disableEditing = customizationService.getCustomization('panelMeasurement.disableEditing');
|
||||
const codingValues = customizationService.getCustomization('codingValues', {});
|
||||
|
||||
const { disableEditing } = customizationService.getCustomization(
|
||||
'PanelMeasurement.disableEditing',
|
||||
{
|
||||
id: 'default.disableEditing',
|
||||
disableEditing: false,
|
||||
}
|
||||
);
|
||||
|
||||
const displaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
|
||||
|
||||
@@ -85,8 +93,7 @@ export default function hydrateStructuredReport(
|
||||
}
|
||||
});
|
||||
|
||||
// Mapping of legacy datasets is now directly handled by adapters module
|
||||
const datasetToUse = instance;
|
||||
const datasetToUse = _mapLegacyDataSet(instance);
|
||||
|
||||
// Use dcmjs to generate toolState.
|
||||
let storedMeasurementByAnnotationType = MeasurementReport.generateToolState(
|
||||
@@ -100,7 +107,8 @@ export default function hydrateStructuredReport(
|
||||
metaData
|
||||
);
|
||||
|
||||
const onBeforeSRHydration = customizationService.getCustomization('onBeforeSRHydration')?.value;
|
||||
const onBeforeSRHydration =
|
||||
customizationService.getModeCustomization('onBeforeSRHydration')?.value;
|
||||
|
||||
if (typeof onBeforeSRHydration === 'function') {
|
||||
storedMeasurementByAnnotationType = onBeforeSRHydration({
|
||||
@@ -200,11 +208,7 @@ export default function hydrateStructuredReport(
|
||||
annotation.data.label = getLabelFromDCMJSImportedToolData(toolData);
|
||||
annotation.data.finding = convertCode(codingValues, toolData.finding?.[0]);
|
||||
annotation.data.findingSites = convertSites(codingValues, toolData.findingSites);
|
||||
annotation.data.findingSites?.forEach(site => {
|
||||
if (site.type) {
|
||||
annotation.data[site.type] = site;
|
||||
}
|
||||
});
|
||||
annotation.data.site = annotation.data.findingSites?.[0];
|
||||
|
||||
const matchingMapping = mappings.find(m => m.annotationType === annotationType);
|
||||
|
||||
@@ -216,13 +220,9 @@ export default function hydrateStructuredReport(
|
||||
dataSource
|
||||
);
|
||||
|
||||
commandsManager.runCommand('updateMeasurement', {
|
||||
uid: newAnnotationUID,
|
||||
code: annotation.data.finding,
|
||||
});
|
||||
|
||||
if (disableEditing) {
|
||||
locking.setAnnotationLocked(newAnnotationUID, true);
|
||||
const addedAnnotation = annotationManager.getAnnotation(newAnnotationUID);
|
||||
locking.setAnnotationLocked(addedAnnotation, true);
|
||||
}
|
||||
|
||||
if (!imageIds.includes(imageId)) {
|
||||
@@ -238,3 +238,62 @@ export default function hydrateStructuredReport(
|
||||
SeriesInstanceUIDs,
|
||||
};
|
||||
}
|
||||
|
||||
function _mapLegacyDataSet(dataset) {
|
||||
const REPORT = 'Imaging Measurements';
|
||||
const GROUP = 'Measurement Group';
|
||||
const TRACKING_IDENTIFIER = 'Tracking Identifier';
|
||||
|
||||
// Identify the Imaging Measurements
|
||||
const imagingMeasurementContent = toArray(dataset.ContentSequence).find(
|
||||
codeMeaningEquals(REPORT)
|
||||
);
|
||||
|
||||
// Retrieve the Measurements themselves
|
||||
const measurementGroups = toArray(imagingMeasurementContent.ContentSequence).filter(
|
||||
codeMeaningEquals(GROUP)
|
||||
);
|
||||
|
||||
// For each of the supported measurement types, compute the measurement data
|
||||
const measurementData = {};
|
||||
|
||||
const cornerstoneToolClasses = MeasurementReport.CORNERSTONE_TOOL_CLASSES_BY_UTILITY_TYPE;
|
||||
|
||||
const registeredToolClasses = [];
|
||||
|
||||
Object.keys(cornerstoneToolClasses).forEach(key => {
|
||||
registeredToolClasses.push(cornerstoneToolClasses[key]);
|
||||
measurementData[key] = [];
|
||||
});
|
||||
|
||||
measurementGroups.forEach((measurementGroup, index) => {
|
||||
const measurementGroupContentSequence = toArray(measurementGroup.ContentSequence);
|
||||
|
||||
const TrackingIdentifierGroup = measurementGroupContentSequence.find(
|
||||
contentItem => contentItem.ConceptNameCodeSequence.CodeMeaning === TRACKING_IDENTIFIER
|
||||
);
|
||||
|
||||
const TrackingIdentifier = TrackingIdentifierGroup.TextValue;
|
||||
|
||||
let [cornerstoneTag, toolName] = TrackingIdentifier.split(':');
|
||||
if (supportedLegacyCornerstoneTags.includes(cornerstoneTag)) {
|
||||
cornerstoneTag = CORNERSTONE_3D_TAG;
|
||||
}
|
||||
|
||||
const mappedTrackingIdentifier = `${cornerstoneTag}:${toolName}`;
|
||||
|
||||
TrackingIdentifierGroup.TextValue = mappedTrackingIdentifier;
|
||||
});
|
||||
|
||||
return dataset;
|
||||
}
|
||||
|
||||
const toArray = function (x) {
|
||||
return Array.isArray(x) ? x : [x];
|
||||
};
|
||||
|
||||
const codeMeaningEquals = codeMeaningName => {
|
||||
return contentItem => {
|
||||
return contentItem.ConceptNameCodeSequence.CodeMeaning === codeMeaningName;
|
||||
};
|
||||
};
|
||||
@@ -0,0 +1,60 @@
|
||||
import { adaptersSR } from '@cornerstonejs/adapters';
|
||||
|
||||
const cornerstoneAdapters =
|
||||
adaptersSR.Cornerstone3D.MeasurementReport.CORNERSTONE_TOOL_CLASSES_BY_UTILITY_TYPE;
|
||||
|
||||
const supportedLegacyCornerstoneTags = ['cornerstoneTools@^4.0.0'];
|
||||
const CORNERSTONE_3D_TAG = adaptersSR.Cornerstone3D.CORNERSTONE_3D_TAG;
|
||||
|
||||
/**
|
||||
* Checks if the given `displaySet`can be rehydrated into the `measurementService`.
|
||||
*
|
||||
* @param {object} displaySet The SR `displaySet` to check.
|
||||
* @param {object[]} mappings The CornerstoneTools 4 mappings to the `measurementService`.
|
||||
* @returns {boolean} True if the SR can be rehydrated into the `measurementService`.
|
||||
*/
|
||||
export default function isRehydratable(displaySet, mappings) {
|
||||
if (!mappings || !mappings.length) {
|
||||
return false;
|
||||
}
|
||||
|
||||
const mappingDefinitions = mappings.map(m => m.annotationType);
|
||||
const { measurements } = displaySet;
|
||||
|
||||
const adapterKeys = Object.keys(cornerstoneAdapters).filter(
|
||||
adapterKey =>
|
||||
typeof cornerstoneAdapters[adapterKey].isValidCornerstoneTrackingIdentifier === 'function'
|
||||
);
|
||||
|
||||
const adapters = [];
|
||||
|
||||
adapterKeys.forEach(key => {
|
||||
if (mappingDefinitions.includes(key)) {
|
||||
// Must have both a dcmjs adapter and a measurementService
|
||||
// Definition in order to be a candidate for import.
|
||||
adapters.push(cornerstoneAdapters[key]);
|
||||
}
|
||||
});
|
||||
|
||||
for (let i = 0; i < measurements.length; i++) {
|
||||
const { TrackingIdentifier } = measurements[i] || {};
|
||||
const hydratable = adapters.some(adapter => {
|
||||
let [cornerstoneTag, toolName] = TrackingIdentifier.split(':');
|
||||
if (supportedLegacyCornerstoneTags.includes(cornerstoneTag)) {
|
||||
cornerstoneTag = CORNERSTONE_3D_TAG;
|
||||
}
|
||||
|
||||
const mappedTrackingIdentifier = `${cornerstoneTag}:${toolName}`;
|
||||
|
||||
return adapter.isValidCornerstoneTrackingIdentifier(mappedTrackingIdentifier);
|
||||
});
|
||||
|
||||
if (hydratable) {
|
||||
return true;
|
||||
}
|
||||
console.log('Measurement is not rehydratable', TrackingIdentifier, measurements[i]);
|
||||
}
|
||||
|
||||
console.log('No measurements found which were rehydratable');
|
||||
return false;
|
||||
}
|
||||
@@ -1,41 +0,0 @@
|
||||
import { adaptersSR } from '@cornerstonejs/adapters';
|
||||
|
||||
const { MeasurementReport } = adaptersSR.Cornerstone3D;
|
||||
|
||||
/**
|
||||
* Checks if the given `displaySet`can be rehydrated into the `measurementService`.
|
||||
*
|
||||
* @param {object} displaySet The SR `displaySet` to check.
|
||||
* @param {object[]} mappings The CornerstoneTools 4 mappings to the `measurementService`.
|
||||
* @returns {boolean} True if the SR can be rehydrated into the `measurementService`.
|
||||
*/
|
||||
export default function isRehydratable(displaySet, mappings) {
|
||||
if (!mappings || !mappings.length) {
|
||||
return false;
|
||||
}
|
||||
|
||||
const mappingDefinitions = new Set<string>();
|
||||
for (const m of mappings) {
|
||||
mappingDefinitions.add(m.annotationType);
|
||||
}
|
||||
|
||||
const { measurements } = displaySet;
|
||||
|
||||
for (let i = 0; i < measurements.length; i++) {
|
||||
const { TrackingIdentifier } = measurements[i] || {};
|
||||
if (!TrackingIdentifier) {
|
||||
console.warn('No tracking identifier for measurement ', measurements[i]);
|
||||
continue;
|
||||
}
|
||||
const adapter = MeasurementReport.getAdapterForTrackingIdentifier(TrackingIdentifier);
|
||||
const hydratable = adapter && mappingDefinitions.has(adapter.toolType);
|
||||
|
||||
if (hydratable) {
|
||||
return true;
|
||||
}
|
||||
console.log('Measurement is not rehydratable', TrackingIdentifier, measurements[i]);
|
||||
}
|
||||
|
||||
console.log('No measurements found which were rehydratable');
|
||||
return false;
|
||||
}
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dynamic-volume",
|
||||
"version": "3.11.0-beta.52",
|
||||
"version": "3.9.2",
|
||||
"description": "OHIF extension for 4D volumes data",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -29,11 +29,11 @@
|
||||
"test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.11.0-beta.52",
|
||||
"@ohif/extension-cornerstone": "3.11.0-beta.52",
|
||||
"@ohif/extension-default": "3.11.0-beta.52",
|
||||
"@ohif/i18n": "3.11.0-beta.52",
|
||||
"@ohif/ui": "3.11.0-beta.52",
|
||||
"@ohif/core": "3.9.2",
|
||||
"@ohif/extension-cornerstone": "3.9.2",
|
||||
"@ohif/extension-default": "3.9.2",
|
||||
"@ohif/i18n": "3.9.2",
|
||||
"@ohif/ui": "3.9.2",
|
||||
"dcmjs": "*",
|
||||
"dicom-parser": "^1.8.21",
|
||||
"hammerjs": "^2.0.8",
|
||||
@@ -42,8 +42,8 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/core": "^3.15.6",
|
||||
"@cornerstonejs/tools": "^3.15.6",
|
||||
"@cornerstonejs/core": "^2.2.20",
|
||||
"@cornerstonejs/tools": "^2.2.20",
|
||||
"classnames": "^2.3.2"
|
||||
}
|
||||
}
|
||||
+1
@@ -262,6 +262,7 @@ function _getInstanceFromSegmentations(segmentations, { servicesManager }) {
|
||||
}
|
||||
|
||||
function updateSegmentationsChartDisplaySet({ servicesManager }: withAppTypes): void {
|
||||
debugger;
|
||||
const { segmentationService } = servicesManager.services;
|
||||
const segmentations = segmentationService.getSegmentations();
|
||||
const { seriesMetadata, instance } =
|
||||
|
||||
@@ -263,7 +263,7 @@ const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
}
|
||||
}
|
||||
|
||||
commandsManager.run('setDisplaySetsForViewports', { viewportsToUpdate });
|
||||
viewportGridService.setDisplaySetsForViewports(viewportsToUpdate);
|
||||
},
|
||||
swapComputedWithDynamicDisplaySet: () => {
|
||||
// Todo: this assumes there is only one dynamic display set in the viewer
|
||||
@@ -313,7 +313,7 @@ const commandsModule = ({ commandsManager, servicesManager }: withAppTypes) => {
|
||||
}
|
||||
}
|
||||
|
||||
commandsManager.run('setDisplaySetsForViewports', { viewportsToUpdate });
|
||||
viewportGridService.setDisplaySetsForViewports(viewportsToUpdate);
|
||||
},
|
||||
createNewLabelMapForDynamicVolume: async ({ label }) => {
|
||||
const { viewports, activeViewportId } = viewportGridService.getState();
|
||||
|
||||
@@ -1,12 +1,10 @@
|
||||
import React from 'react';
|
||||
import { DynamicDataPanel } from './panels';
|
||||
import { Toolbox } from '@ohif/extension-default';
|
||||
import { Toolbox } from '@ohif/ui-next';
|
||||
import { PanelSegmentation } from '@ohif/extension-cornerstone';
|
||||
import DynamicExport from './panels/DynamicExport';
|
||||
|
||||
function getPanelModule({ commandsManager, extensionManager, servicesManager, configuration }) {
|
||||
const { toolbarService } = servicesManager.services;
|
||||
|
||||
const wrappedDynamicDataPanel = () => {
|
||||
return (
|
||||
<DynamicDataPanel
|
||||
@@ -21,7 +19,10 @@ function getPanelModule({ commandsManager, extensionManager, servicesManager, co
|
||||
return (
|
||||
<>
|
||||
<Toolbox
|
||||
buttonSectionId={toolbarService.sections.dynamicToolbox}
|
||||
commandsManager={commandsManager}
|
||||
servicesManager={servicesManager}
|
||||
extensionManager={extensionManager}
|
||||
buttonSectionId="dynamic-toolbox"
|
||||
title="Threshold Tools"
|
||||
/>
|
||||
<PanelSegmentation
|
||||
|
||||
@@ -1,45 +1,38 @@
|
||||
import React, { useState } from 'react';
|
||||
import React, { useEffect, useState } from 'react';
|
||||
import {
|
||||
Tabs,
|
||||
TabsList,
|
||||
TabsTrigger,
|
||||
Button,
|
||||
PanelSection,
|
||||
Icons,
|
||||
ButtonGroup,
|
||||
IconButton,
|
||||
InputNumber,
|
||||
Icon,
|
||||
Tooltip,
|
||||
TooltipTrigger,
|
||||
TooltipContent,
|
||||
Numeric,
|
||||
} from '@ohif/ui-next';
|
||||
} from '@ohif/ui';
|
||||
|
||||
import { DoubleSlider } from '@ohif/ui-next';
|
||||
|
||||
import { Enums } from '@cornerstonejs/core';
|
||||
|
||||
// Helper function to safely convert any value to uppercase string
|
||||
const toUpperCaseString = value => {
|
||||
if (value === null || value === undefined) {
|
||||
return '';
|
||||
}
|
||||
return String(value).toUpperCase();
|
||||
const controlClassNames = {
|
||||
sizeClassName: 'w-[58px] h-[28px]',
|
||||
arrowsDirection: 'horizontal',
|
||||
labelPosition: 'bottom',
|
||||
};
|
||||
|
||||
const Header = ({ title, tooltip }) => (
|
||||
<div className="flex items-center space-x-1">
|
||||
<Tooltip>
|
||||
<TooltipTrigger asChild>
|
||||
<span>
|
||||
<Icons.ByName
|
||||
name="info-link"
|
||||
className="text-primary h-3 w-3"
|
||||
/>
|
||||
</span>
|
||||
</TooltipTrigger>
|
||||
<TooltipContent
|
||||
sideOffset={4}
|
||||
className="max-w-xs"
|
||||
>
|
||||
<div>{tooltip}</div>
|
||||
</TooltipContent>
|
||||
<Tooltip
|
||||
content={<div className="text-white">{tooltip}</div>}
|
||||
position="bottom-left"
|
||||
tight={true}
|
||||
tooltipBoxClassName="max-w-xs p-2"
|
||||
>
|
||||
<Icon
|
||||
name="info-link"
|
||||
className="text-primary-active h-[14px] w-[14px]"
|
||||
/>
|
||||
</Tooltip>
|
||||
<span className="text-muted-foreground text-xs uppercase tracking-wide">{title}</span>
|
||||
<span className="text-aqua-pale text-[11px] uppercase">{title}</span>
|
||||
</div>
|
||||
);
|
||||
|
||||
@@ -52,149 +45,132 @@ const DynamicVolumeControls = ({
|
||||
minFps,
|
||||
maxFps,
|
||||
// Frames
|
||||
currentDimensionGroupNumber,
|
||||
onDimensionGroupChange,
|
||||
numDimensionGroups,
|
||||
currentFrameIndex,
|
||||
onFrameChange,
|
||||
framesLength,
|
||||
onGenerate,
|
||||
onDoubleRangeChange,
|
||||
rangeValues,
|
||||
onDynamicClick,
|
||||
}) => {
|
||||
const [computedView, setComputedView] = useState(false);
|
||||
|
||||
const [computeViewMode, setComputeViewMode] = useState(Enums.DynamicOperatorType.SUM);
|
||||
|
||||
// Wrapper for onGenerate to handle potential errors
|
||||
const handleGenerate = () => {
|
||||
try {
|
||||
if (typeof onGenerate === 'function') {
|
||||
onGenerate(computeViewMode);
|
||||
} else {
|
||||
console.error('onGenerate is not a function', onGenerate);
|
||||
}
|
||||
} catch (error) {
|
||||
console.error('Error in onGenerate:', error);
|
||||
}
|
||||
const [sliderRangeValues, setSliderRangeValues] = useState([0, framesLength - 1]);
|
||||
|
||||
const handleSliderChange = newValues => {
|
||||
onDoubleRangeChange(newValues);
|
||||
setSliderRangeValues(newValues);
|
||||
};
|
||||
|
||||
const formatLabel = value => Math.round(value);
|
||||
|
||||
return (
|
||||
<div className="flex select-none flex-col">
|
||||
<PanelSection defaultOpen={true}>
|
||||
<PanelSection.Header>Controls</PanelSection.Header>
|
||||
<PanelSection.Content className="bg-muted space-y-4 px-5 pt-2 pb-4">
|
||||
<div className="mb-4">
|
||||
<Header
|
||||
title="View"
|
||||
tooltip={
|
||||
'Select the view mode, 4D to view the dynamic volume or Computed to view the computed volume'
|
||||
}
|
||||
/>
|
||||
<Tabs
|
||||
value={computedView ? 'computed' : '4d'}
|
||||
onValueChange={value => {
|
||||
const isComputed = value === 'computed';
|
||||
setComputedView(isComputed);
|
||||
if (!isComputed && typeof onDynamicClick === 'function') {
|
||||
onDynamicClick();
|
||||
}
|
||||
<PanelSection
|
||||
title="Controls"
|
||||
childrenClassName="space-y-4 pb-5 px-5"
|
||||
>
|
||||
<div className="mt-2">
|
||||
<Header
|
||||
title="View"
|
||||
tooltip={
|
||||
'Select the view mode, 4D to view the dynamic volume or Computed to view the computed volume'
|
||||
}
|
||||
/>
|
||||
<ButtonGroup className="mt-2 w-full">
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => {
|
||||
setComputedView(false);
|
||||
onDynamicClick?.();
|
||||
}}
|
||||
className="my-2 w-full"
|
||||
>
|
||||
<TabsList className="w-full">
|
||||
<TabsTrigger
|
||||
value="4d"
|
||||
className="w-1/2"
|
||||
>
|
||||
4D
|
||||
</TabsTrigger>
|
||||
<TabsTrigger
|
||||
value="computed"
|
||||
className="w-1/2"
|
||||
>
|
||||
Computed
|
||||
</TabsTrigger>
|
||||
</TabsList>
|
||||
</Tabs>
|
||||
</div>
|
||||
<div>
|
||||
<DimensionGroupControls
|
||||
onPlayPauseChange={onPlayPauseChange}
|
||||
isPlaying={isPlaying}
|
||||
computedView={computedView}
|
||||
// fps
|
||||
fps={fps}
|
||||
onFpsChange={onFpsChange}
|
||||
minFps={minFps}
|
||||
maxFps={maxFps}
|
||||
//
|
||||
numDimensionGroups={numDimensionGroups}
|
||||
onDimensionGroupChange={onDimensionGroupChange}
|
||||
currentDimensionGroupNumber={currentDimensionGroupNumber}
|
||||
/>
|
||||
</div>
|
||||
<div className={`mt-3 flex flex-col ${computedView ? '' : 'ohif-disabled'}`}>
|
||||
<Header
|
||||
title="Computed Operation"
|
||||
tooltip={
|
||||
<div>
|
||||
Operation Buttons (SUM, AVERAGE, SUBTRACT): Select the mathematical operation to
|
||||
be applied to the data set.
|
||||
<br /> Range Slider: Choose the numeric range of dimension groups within which the
|
||||
operation will be performed.
|
||||
<br />
|
||||
Generate Button: Execute the chosen operation on the specified range of data.
|
||||
</div>
|
||||
}
|
||||
/>
|
||||
<Tabs
|
||||
value={String(computeViewMode)}
|
||||
onValueChange={value => {
|
||||
setComputeViewMode(value);
|
||||
4D
|
||||
</button>
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => {
|
||||
setComputedView(true);
|
||||
}}
|
||||
className="mt-2 w-full"
|
||||
>
|
||||
<TabsList className="w-full gap-1">
|
||||
{' '}
|
||||
<TabsTrigger
|
||||
value={String(Enums.DynamicOperatorType.SUM)}
|
||||
className="w-1/3"
|
||||
>
|
||||
{toUpperCaseString(Enums.DynamicOperatorType.SUM)}
|
||||
</TabsTrigger>
|
||||
<TabsTrigger
|
||||
value={String(Enums.DynamicOperatorType.AVERAGE)}
|
||||
className="w-1/3"
|
||||
>
|
||||
{toUpperCaseString(Enums.DynamicOperatorType.AVERAGE)}
|
||||
</TabsTrigger>
|
||||
<TabsTrigger
|
||||
value={String(Enums.DynamicOperatorType.SUBTRACT)}
|
||||
className="w-1/3"
|
||||
>
|
||||
{toUpperCaseString(Enums.DynamicOperatorType.SUBTRACT)}
|
||||
</TabsTrigger>
|
||||
</TabsList>
|
||||
</Tabs>
|
||||
<div className="mt-2 w-full">
|
||||
<Numeric.Container
|
||||
mode="doubleRange"
|
||||
min={1}
|
||||
max={numDimensionGroups || 1}
|
||||
values={rangeValues || [1, numDimensionGroups || 1]}
|
||||
onChange={onDoubleRangeChange || (() => {})}
|
||||
>
|
||||
<Numeric.DoubleRange showNumberInputs />
|
||||
</Numeric.Container>
|
||||
</div>
|
||||
<Button
|
||||
variant="default"
|
||||
size="sm"
|
||||
className="mt-2 h-[26px] w-[115px] self-start p-0"
|
||||
onClick={handleGenerate}
|
||||
Computed
|
||||
</button>
|
||||
</ButtonGroup>
|
||||
</div>
|
||||
<div>
|
||||
<FrameControls
|
||||
onPlayPauseChange={onPlayPauseChange}
|
||||
isPlaying={isPlaying}
|
||||
computedView={computedView}
|
||||
// fps
|
||||
fps={fps}
|
||||
onFpsChange={onFpsChange}
|
||||
minFps={minFps}
|
||||
maxFps={maxFps}
|
||||
//
|
||||
framesLength={framesLength}
|
||||
onFrameChange={onFrameChange}
|
||||
currentFrameIndex={currentFrameIndex}
|
||||
/>
|
||||
</div>
|
||||
<div className={`mt-6 flex flex-col ${computedView ? '' : 'ohif-disabled'}`}>
|
||||
<Header
|
||||
title="Computed Operation"
|
||||
tooltip={
|
||||
<div>
|
||||
Operation Buttons (SUM, AVERAGE, SUBTRACT): Select the mathematical operation to be
|
||||
applied to the data set.
|
||||
<br></br> Range Slider: Choose the numeric range within which the operation will be
|
||||
performed.
|
||||
<br></br>Generate Button: Execute the chosen operation on the specified range of
|
||||
data.{' '}
|
||||
</div>
|
||||
}
|
||||
/>
|
||||
<ButtonGroup
|
||||
className={`mt-2 w-full`}
|
||||
separated={true}
|
||||
>
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => setComputeViewMode(Enums.DynamicOperatorType.SUM)}
|
||||
>
|
||||
Generate
|
||||
</Button>
|
||||
{Enums.DynamicOperatorType.SUM.toString().toUpperCase()}
|
||||
</button>
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => setComputeViewMode(Enums.DynamicOperatorType.AVERAGE)}
|
||||
>
|
||||
{Enums.DynamicOperatorType.AVERAGE.toString().toUpperCase()}
|
||||
</button>
|
||||
<button
|
||||
className="w-1/2"
|
||||
onClick={() => setComputeViewMode(Enums.DynamicOperatorType.SUBTRACT)}
|
||||
>
|
||||
{Enums.DynamicOperatorType.SUBTRACT.toString().toUpperCase()}
|
||||
</button>
|
||||
</ButtonGroup>
|
||||
<div className="mt-2 w-full">
|
||||
<DoubleSlider
|
||||
min={0}
|
||||
max={framesLength - 1}
|
||||
step={1}
|
||||
defaultValue={sliderRangeValues}
|
||||
onValueChange={handleSliderChange}
|
||||
formatLabel={formatLabel}
|
||||
className="w-full"
|
||||
/>
|
||||
</div>
|
||||
</PanelSection.Content>
|
||||
<Button
|
||||
className="mt-2 !h-[26px] !w-[115px] self-start !p-0"
|
||||
onClick={() => {
|
||||
onGenerate(computeViewMode);
|
||||
}}
|
||||
>
|
||||
Generate
|
||||
</Button>
|
||||
</div>
|
||||
</PanelSection>
|
||||
</div>
|
||||
);
|
||||
@@ -202,84 +178,58 @@ const DynamicVolumeControls = ({
|
||||
|
||||
export default DynamicVolumeControls;
|
||||
|
||||
function DimensionGroupControls({
|
||||
function FrameControls({
|
||||
isPlaying,
|
||||
onPlayPauseChange,
|
||||
fps,
|
||||
minFps,
|
||||
maxFps,
|
||||
onFpsChange,
|
||||
numDimensionGroups,
|
||||
onDimensionGroupChange,
|
||||
currentDimensionGroupNumber,
|
||||
framesLength,
|
||||
onFrameChange,
|
||||
currentFrameIndex,
|
||||
computedView,
|
||||
}) {
|
||||
const getPlayPauseIconName = () => (isPlaying ? 'icon-pause' : 'icon-play');
|
||||
|
||||
return (
|
||||
<div className={computedView ? 'ohif-disabled' : ''}>
|
||||
<div className={computedView && 'ohif-disabled'}>
|
||||
<Header
|
||||
title="4D Controls"
|
||||
tooltip={
|
||||
<div>
|
||||
Play/Pause Button: Begin or pause the animation of the 4D visualization. <br />
|
||||
Dimension Group Selector: Navigate through individual dimension groups of the 4D data.{' '}
|
||||
<br />
|
||||
FPS (Frames Per Second) Selector: Adjust the playback speed of the animation.
|
||||
Play/Pause Button: Begin or pause the animation of the 4D visualization. <br></br> Frame
|
||||
Selector: Navigate through individual frames of the 4D data. <br></br> FPS (Frames Per
|
||||
Second) Selector: Adjust the playback speed of the animation.
|
||||
</div>
|
||||
}
|
||||
/>
|
||||
<div className="mt-3 flex justify-between">
|
||||
<Button
|
||||
id="play-pause-button"
|
||||
variant="secondary"
|
||||
size="default"
|
||||
className="w-[58px]"
|
||||
onClick={() => {
|
||||
if (typeof onPlayPauseChange === 'function') {
|
||||
onPlayPauseChange(!isPlaying);
|
||||
}
|
||||
}}
|
||||
<IconButton
|
||||
className="bg-customblue-30 h-[26px] w-[58px] rounded-[4px]"
|
||||
onClick={() => onPlayPauseChange(!isPlaying)}
|
||||
>
|
||||
<Icons.ByName
|
||||
<Icon
|
||||
name={getPlayPauseIconName()}
|
||||
className="text-foreground h-[24px] w-[24px]"
|
||||
className="active:text-primary-light hover:bg-customblue-300 h-[24px] w-[24px] cursor-pointer text-white"
|
||||
/>
|
||||
</Button>
|
||||
|
||||
<Numeric.Container
|
||||
mode="stepper"
|
||||
value={currentDimensionGroupNumber || 1}
|
||||
onChange={onDimensionGroupChange || (() => {})}
|
||||
min={1}
|
||||
max={numDimensionGroups || 1}
|
||||
step={1}
|
||||
>
|
||||
<div className="flex flex-col items-center">
|
||||
<Numeric.NumberStepper
|
||||
className="h-[28px] w-[58px]"
|
||||
direction="horizontal"
|
||||
/>
|
||||
<Numeric.Label className="text-muted-foreground mt-1 text-sm">Frame</Numeric.Label>
|
||||
</div>
|
||||
</Numeric.Container>
|
||||
|
||||
<Numeric.Container
|
||||
mode="stepper"
|
||||
value={fps || 1}
|
||||
onChange={onFpsChange || (() => {})}
|
||||
min={minFps || 1}
|
||||
max={maxFps || 30}
|
||||
step={1}
|
||||
>
|
||||
<div className="flex flex-col items-center">
|
||||
<Numeric.NumberStepper
|
||||
className="h-[28px] w-[58px]"
|
||||
direction="horizontal"
|
||||
/>
|
||||
<Numeric.Label className="text-muted-foreground mt-1 text-sm">FPS</Numeric.Label>
|
||||
</div>
|
||||
</Numeric.Container>
|
||||
</IconButton>
|
||||
<InputNumber
|
||||
value={currentFrameIndex}
|
||||
onChange={onFrameChange}
|
||||
minValue={0}
|
||||
maxValue={framesLength - 1}
|
||||
label="Frame"
|
||||
{...controlClassNames}
|
||||
/>
|
||||
<InputNumber
|
||||
value={fps}
|
||||
onChange={onFpsChange}
|
||||
minValue={minFps}
|
||||
maxValue={maxFps}
|
||||
{...controlClassNames}
|
||||
label="FPS"
|
||||
/>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
|
||||
@@ -0,0 +1,71 @@
|
||||
import React from 'react';
|
||||
import { InputDoubleRange } from '@ohif/ui';
|
||||
import { Select } from '@ohif/ui';
|
||||
import { Button } from '@ohif/ui';
|
||||
import PropTypes from 'prop-types';
|
||||
|
||||
const GenerateVolume = ({
|
||||
rangeValues,
|
||||
handleSliderChange,
|
||||
operationsUI,
|
||||
options,
|
||||
handleGenerateOptionsChange,
|
||||
onGenerateImage,
|
||||
returnTo4D,
|
||||
displayingComputedVolume,
|
||||
}) => {
|
||||
return (
|
||||
<>
|
||||
<div>
|
||||
<div className="mb-2 text-white">Computed Image</div>
|
||||
<Select
|
||||
closeMenuOnSelect={true}
|
||||
className="border-primary-main mr-2 bg-black text-white "
|
||||
options={operationsUI}
|
||||
placeholder={operationsUI.find(option => option.value === options.Operation).placeHolder}
|
||||
value={options.Operation}
|
||||
onChange={({ value }) => {
|
||||
handleGenerateOptionsChange({
|
||||
Operation: value,
|
||||
});
|
||||
}}
|
||||
/>
|
||||
<InputDoubleRange
|
||||
values={rangeValues}
|
||||
onChange={handleSliderChange}
|
||||
minValue={rangeValues[0] || 1}
|
||||
maxValue={rangeValues[1] || 2}
|
||||
showLabel={true}
|
||||
step={1}
|
||||
/>
|
||||
<div className="flex space-x-2">
|
||||
<Button
|
||||
onClick={onGenerateImage}
|
||||
className="w-1/2"
|
||||
>
|
||||
Generate
|
||||
</Button>
|
||||
<Button
|
||||
onClick={returnTo4D}
|
||||
disabled={!displayingComputedVolume}
|
||||
className="w-1/2"
|
||||
>
|
||||
Return To 4D
|
||||
</Button>
|
||||
</div>
|
||||
</div>
|
||||
</>
|
||||
);
|
||||
};
|
||||
|
||||
GenerateVolume.propTypes = {
|
||||
rangeValues: PropTypes.array.isRequired,
|
||||
handleSliderChange: PropTypes.func.isRequired,
|
||||
operationsUI: PropTypes.array.isRequired,
|
||||
options: PropTypes.object.isRequired,
|
||||
handleGenerateOptionsChange: PropTypes.func.isRequired,
|
||||
onGenerateImage: PropTypes.func.isRequired,
|
||||
returnTo4D: PropTypes.func.isRequired,
|
||||
};
|
||||
|
||||
export default GenerateVolume;
|
||||
@@ -1,6 +1,5 @@
|
||||
import React, { useEffect, useState, useRef } from 'react';
|
||||
import { useCine } from '@ohif/ui-next';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import { useCine, useViewportGrid } from '@ohif/ui';
|
||||
import { utilities as csUtils, volumeLoader, eventTarget, Enums, cache } from '@cornerstonejs/core';
|
||||
import { utilities as cstUtils } from '@cornerstonejs/tools';
|
||||
import DynamicVolumeControls from './DynamicVolumeControls';
|
||||
@@ -15,12 +14,13 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
const [{ activeViewportId }] = useViewportGrid();
|
||||
|
||||
//
|
||||
const [dimensionGroupRange, setDimensionGroupRange] = useState([1, 1]);
|
||||
const [timePointsRange, setTimePointsRange] = useState([0, 0]);
|
||||
const [timePointsRangeToUseForGenerate, setTimePointsRangeToUseForGenerate] = useState([0, 0]);
|
||||
const [computedDisplaySet, setComputedDisplaySet] = useState(null);
|
||||
const [dynamicVolume, setDynamicVolume] = useState(null);
|
||||
const [frameRate, setFrameRate] = useState(20);
|
||||
const [isPlaying, setIsPlaying] = useState(isCineEnabled);
|
||||
const [dimensionGroupNumberRendered, setDimensionGroupNumberRendered] = useState(null);
|
||||
const [timePointRendered, setTimePointRendered] = useState(null);
|
||||
const [displayingComputed, setDisplayingComputed] = useState(false);
|
||||
|
||||
//
|
||||
@@ -37,8 +37,9 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
if (volumeData.volume?.isDynamicVolume()) {
|
||||
setDynamicVolume(volumeData.volume);
|
||||
uuidDynamicVolume.current = volumeData.displaySetInstanceUID;
|
||||
const newRange = [1, volumeData.volume.numDimensionGroups];
|
||||
setDimensionGroupRange(newRange);
|
||||
const newRange = [1, volumeData.volume.numTimePoints];
|
||||
setTimePointsRange(newRange);
|
||||
setTimePointsRangeToUseForGenerate(newRange);
|
||||
}
|
||||
});
|
||||
};
|
||||
@@ -63,10 +64,10 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
}, [cornerstoneViewportService, cineService, servicesManager.services.cineService]);
|
||||
|
||||
useEffect(() => {
|
||||
const evt = Enums.Events.DYNAMIC_VOLUME_DIMENSION_GROUP_CHANGED;
|
||||
const evt = Enums.Events.DYNAMIC_VOLUME_TIME_POINT_INDEX_CHANGED;
|
||||
|
||||
const callback = evt => {
|
||||
setDimensionGroupNumberRendered(evt.detail.dimensionGroupNumber);
|
||||
setTimePointRendered(evt.detail.timePointIndex);
|
||||
};
|
||||
|
||||
eventTarget.addEventListener(evt, callback);
|
||||
@@ -74,7 +75,7 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
return () => {
|
||||
eventTarget.removeEventListener(evt, callback);
|
||||
};
|
||||
}, []);
|
||||
}, [cornerstoneViewportService]);
|
||||
|
||||
useEffect(() => {
|
||||
const displaySetUIDs = viewportGridService.getDisplaySetsUIDsForViewport(activeViewportId);
|
||||
@@ -100,7 +101,9 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
|
||||
setDynamicVolume(dynamicVolume);
|
||||
uuidDynamicVolume.current = dynamicVolumeDisplaySet.displaySetInstanceUID;
|
||||
setDimensionGroupRange([1, dynamicVolume.numDimensionGroups]);
|
||||
const newRange = [1, dynamicVolume.numTimePoints];
|
||||
setTimePointsRange(newRange);
|
||||
setTimePointsRangeToUseForGenerate(newRange);
|
||||
}, [
|
||||
activeViewportId,
|
||||
viewportGridService,
|
||||
@@ -137,12 +140,11 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
volumeId: computedVolumeId,
|
||||
});
|
||||
}
|
||||
const [start, end] = dimensionGroupRange;
|
||||
// from start to end, with steps of 1
|
||||
const frameNumbers = Array.from({ length: end - start + 1 }, (_, i) => start + i);
|
||||
const [start, end] = timePointsRangeToUseForGenerate;
|
||||
const frameNumbers = Array.from({ length: end - start + 1 }, (_, i) => i + start - 1);
|
||||
|
||||
const options = {
|
||||
dimensionGroupNumbers: operationName === 'SUBTRACT' ? [start, end] : frameNumbers,
|
||||
frameNumbers: operationName === 'SUBTRACT' ? [start, end - 1] : frameNumbers,
|
||||
targetVolume: computedVolume,
|
||||
};
|
||||
|
||||
@@ -204,6 +206,21 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
handlePlay();
|
||||
};
|
||||
|
||||
function handleSliderChange(newValues) {
|
||||
if (
|
||||
newValues[0] === timePointsRangeToUseForGenerate[0] &&
|
||||
newValues[1] === timePointsRangeToUseForGenerate[1]
|
||||
) {
|
||||
return;
|
||||
}
|
||||
|
||||
setTimePointsRangeToUseForGenerate(newValues);
|
||||
}
|
||||
|
||||
if (!dynamicVolume || timePointsRange.length === 0) {
|
||||
return null;
|
||||
}
|
||||
|
||||
return (
|
||||
<DynamicVolumeControls
|
||||
fps={frameRate}
|
||||
@@ -211,16 +228,16 @@ export default function PanelGenerateImage({ servicesManager, commandsManager }:
|
||||
onPlayPauseChange={onPlayPauseChange}
|
||||
minFps={1}
|
||||
maxFps={50}
|
||||
currentFrameIndex={timePointRendered}
|
||||
onFpsChange={handleSetFrameRate}
|
||||
currentDimensionGroupNumber={dimensionGroupNumberRendered}
|
||||
numDimensionGroups={dynamicVolume?.numDimensionGroups || 1}
|
||||
onDimensionGroupChange={dimensionGroupNumber => {
|
||||
dynamicVolume.dimensionGroupNumber = dimensionGroupNumber;
|
||||
framesLength={timePointsRange[1]}
|
||||
onFrameChange={timePointIndex => {
|
||||
dynamicVolume.timePointIndex = timePointIndex;
|
||||
}}
|
||||
onGenerate={onGenerateImage}
|
||||
onDynamicClick={displayingComputed ? () => renderDynamicImage(computedDisplaySet) : null}
|
||||
onDoubleRangeChange={setDimensionGroupRange}
|
||||
rangeValues={dimensionGroupRange}
|
||||
onDoubleRangeChange={handleSliderChange}
|
||||
initialRangeValues={timePointsRangeToUseForGenerate}
|
||||
/>
|
||||
);
|
||||
}
|
||||
@@ -5,7 +5,7 @@ function WorkflowPanel({ servicesManager }: { servicesManager: ServicesManager }
|
||||
const ProgressDropdownWithService =
|
||||
servicesManager.services.customizationService.getCustomization(
|
||||
'progressDropdownWithServiceComponent'
|
||||
);
|
||||
).component;
|
||||
|
||||
return (
|
||||
<div
|
||||
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone",
|
||||
"version": "3.11.0-beta.52",
|
||||
"version": "3.9.2",
|
||||
"description": "OHIF extension for Cornerstone",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -38,9 +38,10 @@
|
||||
"@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2",
|
||||
"@cornerstonejs/codec-openjpeg": "^1.2.4",
|
||||
"@cornerstonejs/codec-openjph": "^2.4.5",
|
||||
"@cornerstonejs/dicom-image-loader": "^3.15.6",
|
||||
"@ohif/core": "3.11.0-beta.52",
|
||||
"@ohif/ui": "3.11.0-beta.52",
|
||||
"@cornerstonejs/dicom-image-loader": "^2.2.20",
|
||||
"@icr/polyseg-wasm": "^0.4.0",
|
||||
"@ohif/core": "3.9.2",
|
||||
"@ohif/ui": "3.9.2",
|
||||
"dcmjs": "*",
|
||||
"dicom-parser": "^1.8.21",
|
||||
"hammerjs": "^2.0.8",
|
||||
@@ -49,22 +50,19 @@
|
||||
"react-dom": "^18.3.1",
|
||||
"react-resize-detector": "^10.0.1"
|
||||
},
|
||||
"devDependencies": {
|
||||
"lodash": "^4.17.21"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^3.15.6",
|
||||
"@cornerstonejs/ai": "^3.15.6",
|
||||
"@cornerstonejs/core": "^3.15.6",
|
||||
"@cornerstonejs/labelmap-interpolation": "^3.15.6",
|
||||
"@cornerstonejs/polymorphic-segmentation": "^3.15.6",
|
||||
"@cornerstonejs/tools": "^3.15.6",
|
||||
"@itk-wasm/morphological-contour-interpolation": "1.1.0",
|
||||
"@kitware/vtk.js": "32.12.0",
|
||||
"@cornerstonejs/adapters": "^2.2.20",
|
||||
"@cornerstonejs/core": "^2.2.20",
|
||||
"@cornerstonejs/tools": "^2.2.20",
|
||||
"@icr/polyseg-wasm": "^0.4.0",
|
||||
"@kitware/vtk.js": "32.1.1",
|
||||
"html2canvas": "^1.4.1",
|
||||
"lodash.compact": "^3.0.1",
|
||||
"lodash.debounce": "^4.0.8",
|
||||
"lodash.flatten": "^4.4.0",
|
||||
"lodash.merge": "^4.6.2",
|
||||
"lodash.zip": "^4.2.0",
|
||||
"shader-loader": "^1.3.1",
|
||||
"worker-loader": "^3.0.8"
|
||||
}
|
||||
|
||||
@@ -2,11 +2,6 @@
|
||||
width: 100%;
|
||||
height: 100%; /* MUST have `height` to prevent resize infinite loop */
|
||||
position: relative;
|
||||
/* Prevent text selection on the entire viewport wrapper */
|
||||
user-select: none;
|
||||
-webkit-user-select: none;
|
||||
-moz-user-select: none;
|
||||
-ms-user-select: none;
|
||||
}
|
||||
|
||||
.cornerstone-viewport-element {
|
||||
@@ -21,26 +16,4 @@
|
||||
/* Prevents the entire page from getting larger
|
||||
when the magnify tool is near the sides/corners of the page */
|
||||
overflow: hidden;
|
||||
|
||||
/* Prevent text selection on the viewport element */
|
||||
user-select: none;
|
||||
-webkit-user-select: none;
|
||||
-moz-user-select: none;
|
||||
-ms-user-select: none;
|
||||
}
|
||||
|
||||
/* Prevent text selection on overlay elements */
|
||||
.noselect {
|
||||
user-select: none;
|
||||
-webkit-user-select: none;
|
||||
-moz-user-select: none;
|
||||
-ms-user-select: none;
|
||||
}
|
||||
|
||||
/* Ensure all elements within viewport wrapper prevent text selection */
|
||||
.viewport-wrapper * {
|
||||
user-select: none;
|
||||
-webkit-user-select: none;
|
||||
-moz-user-select: none;
|
||||
-ms-user-select: none;
|
||||
}
|
||||
@@ -1,8 +1,9 @@
|
||||
import React, { useEffect, useRef, useCallback, useState } from 'react';
|
||||
import { useResizeDetector } from 'react-resize-detector';
|
||||
import * as cs3DTools from '@cornerstonejs/tools';
|
||||
import { Enums, eventTarget, getEnabledElement } from '@cornerstonejs/core';
|
||||
import { MeasurementService, useViewportRef } from '@ohif/core';
|
||||
import { useViewportDialog } from '@ohif/ui-next';
|
||||
import { MeasurementService } from '@ohif/core';
|
||||
import { AllInOneMenu, Notification, useViewportDialog } from '@ohif/ui';
|
||||
import type { Types as csTypes } from '@cornerstonejs/core';
|
||||
|
||||
import { setEnabledElement } from '../state';
|
||||
@@ -13,16 +14,20 @@ import CinePlayer from '../components/CinePlayer';
|
||||
import type { Types } from '@ohif/core';
|
||||
|
||||
import OHIFViewportActionCorners from '../components/OHIFViewportActionCorners';
|
||||
import ViewportColorbarsContainer from '../components/ViewportColorbar';
|
||||
import { getWindowLevelActionMenu } from '../components/WindowLevelActionMenu/getWindowLevelActionMenu';
|
||||
import { useAppConfig } from '@state';
|
||||
import { getViewportDataOverlaySettingsMenu } from '../components/ViewportDataOverlaySettingMenu';
|
||||
import { getViewportPresentations } from '../utils/presentations/getViewportPresentations';
|
||||
import { useSynchronizersStore } from '../stores/useSynchronizersStore';
|
||||
import ActiveViewportBehavior from '../utils/ActiveViewportBehavior';
|
||||
import { WITH_NAVIGATION } from '../services/ViewportService/CornerstoneViewportService';
|
||||
|
||||
const STACK = 'stack';
|
||||
|
||||
// Cache for viewport dimensions, persists across component remounts
|
||||
const viewportDimensions = new Map<string, { width: number; height: number }>();
|
||||
/**
|
||||
* Caches the jump to measurement operation, so that if display set is shown,
|
||||
* it can jump to the measurement.
|
||||
*/
|
||||
let cacheJumpToMeasurementEvent;
|
||||
|
||||
// Todo: This should be done with expose of internal API similar to react-vtkjs-viewport
|
||||
// Then we don't need to worry about the re-renders if the props change.
|
||||
@@ -41,6 +46,7 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
viewportOptions,
|
||||
displaySetOptions,
|
||||
servicesManager,
|
||||
commandsManager,
|
||||
onElementEnabled,
|
||||
// eslint-disable-next-line react/prop-types
|
||||
onElementDisabled,
|
||||
@@ -82,7 +88,7 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
const [scrollbarHeight, setScrollbarHeight] = useState('100px');
|
||||
const [enabledVPElement, setEnabledVPElement] = useState(null);
|
||||
const elementRef = useRef() as React.MutableRefObject<HTMLDivElement>;
|
||||
const viewportRef = useViewportRef(viewportId);
|
||||
const [appConfig] = useAppConfig();
|
||||
|
||||
const {
|
||||
displaySetService,
|
||||
@@ -92,56 +98,23 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
cornerstoneViewportService,
|
||||
segmentationService,
|
||||
cornerstoneCacheService,
|
||||
customizationService,
|
||||
measurementService,
|
||||
viewportActionCornersService,
|
||||
} = servicesManager.services;
|
||||
|
||||
const [viewportDialogState] = useViewportDialog();
|
||||
// useCallback for scroll bar height calculation
|
||||
const setImageScrollBarHeight = useCallback(() => {
|
||||
const scrollbarHeight = `${elementRef.current.clientHeight - 10}px`;
|
||||
const scrollbarHeight = `${elementRef.current.clientHeight - 40}px`;
|
||||
setScrollbarHeight(scrollbarHeight);
|
||||
}, [elementRef]);
|
||||
|
||||
// useCallback for onResize
|
||||
const onResize = useCallback(
|
||||
(entries: ResizeObserverEntry[]) => {
|
||||
if (elementRef.current && entries?.length) {
|
||||
const entry = entries[0];
|
||||
const { width, height } = entry.contentRect;
|
||||
|
||||
const prevDimensions = viewportDimensions.get(viewportId) || { width: 0, height: 0 };
|
||||
|
||||
// Check if dimensions actually changed and then only resize if they have changed
|
||||
const hasDimensionsChanged =
|
||||
prevDimensions.width !== width || prevDimensions.height !== height;
|
||||
|
||||
if (width > 0 && height > 0 && hasDimensionsChanged) {
|
||||
viewportDimensions.set(viewportId, { width, height });
|
||||
// Perform resize operations
|
||||
cornerstoneViewportService.resize();
|
||||
setImageScrollBarHeight();
|
||||
}
|
||||
}
|
||||
},
|
||||
[viewportId, elementRef, cornerstoneViewportService, setImageScrollBarHeight]
|
||||
);
|
||||
|
||||
useEffect(() => {
|
||||
const element = elementRef.current;
|
||||
if (!element) {
|
||||
return;
|
||||
const onResize = useCallback(() => {
|
||||
if (elementRef.current) {
|
||||
cornerstoneViewportService.resize();
|
||||
setImageScrollBarHeight();
|
||||
}
|
||||
|
||||
const resizeObserver = new ResizeObserver(onResize);
|
||||
resizeObserver.observe(element);
|
||||
|
||||
// Cleanup function
|
||||
return () => {
|
||||
resizeObserver.unobserve(element);
|
||||
resizeObserver.disconnect();
|
||||
};
|
||||
}, [onResize]);
|
||||
}, [elementRef]);
|
||||
|
||||
const cleanUpServices = useCallback(
|
||||
viewportInfo => {
|
||||
@@ -152,8 +125,16 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
syncGroupService.removeViewportFromSyncGroup(viewportId, renderingEngineId, syncGroups);
|
||||
|
||||
segmentationService.clearSegmentationRepresentations(viewportId);
|
||||
|
||||
viewportActionCornersService.clear(viewportId);
|
||||
},
|
||||
[viewportId, segmentationService, syncGroupService, toolGroupService]
|
||||
[
|
||||
viewportId,
|
||||
segmentationService,
|
||||
syncGroupService,
|
||||
toolGroupService,
|
||||
viewportActionCornersService,
|
||||
]
|
||||
);
|
||||
|
||||
const elementEnabledHandler = useCallback(
|
||||
@@ -165,11 +146,6 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
|
||||
const { viewportId, element } = evt.detail;
|
||||
const viewportInfo = cornerstoneViewportService.getViewportInfo(viewportId);
|
||||
|
||||
if (!viewportInfo) {
|
||||
return;
|
||||
}
|
||||
|
||||
setEnabledElement(viewportId, element);
|
||||
setEnabledVPElement(element);
|
||||
|
||||
@@ -221,7 +197,6 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
}
|
||||
|
||||
cornerstoneViewportService.disableElement(viewportId);
|
||||
viewportRef.unregister();
|
||||
|
||||
eventTarget.removeEventListener(Enums.Events.ELEMENT_ENABLED, elementEnabledHandler);
|
||||
};
|
||||
@@ -283,6 +258,14 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
|
||||
const presentations = getViewportPresentations(viewportId, viewportOptions);
|
||||
|
||||
let measurement;
|
||||
if (cacheJumpToMeasurementEvent?.viewportId === viewportId) {
|
||||
measurement = cacheJumpToMeasurementEvent.measurement;
|
||||
// Delete the position presentation so that viewport navigates direct
|
||||
presentations.positionPresentation = null;
|
||||
cacheJumpToMeasurementEvent = null;
|
||||
}
|
||||
|
||||
// Note: This is a hack to get the grid to re-render the OHIFCornerstoneViewport component
|
||||
// Used for segmentation hydration right now, since the logic to decide whether
|
||||
// a viewport needs to render a segmentation lives inside the CornerstoneViewportService
|
||||
@@ -300,6 +283,10 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
displaySetOptions,
|
||||
presentations
|
||||
);
|
||||
|
||||
if (measurement) {
|
||||
cs3DTools.annotation.selection.setAnnotationSelected(measurement.uid);
|
||||
}
|
||||
};
|
||||
|
||||
loadViewportData();
|
||||
@@ -320,17 +307,71 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
return;
|
||||
}
|
||||
|
||||
const { unsubscribe } = measurementService.subscribe(
|
||||
MeasurementService.EVENTS.JUMP_TO_MEASUREMENT_VIEWPORT,
|
||||
event => handleJumpToMeasurement(event, elementRef, viewportId, cornerstoneViewportService)
|
||||
const unsubscribeFromJumpToMeasurementEvents = _subscribeToJumpToMeasurementEvents(
|
||||
elementRef,
|
||||
viewportId,
|
||||
servicesManager
|
||||
);
|
||||
|
||||
_checkForCachedJumpToMeasurementEvents(elementRef, viewportId, displaySets, servicesManager);
|
||||
|
||||
return () => {
|
||||
unsubscribe();
|
||||
unsubscribeFromJumpToMeasurementEvents();
|
||||
};
|
||||
}, [displaySets, elementRef, viewportId, isJumpToMeasurementDisabled, servicesManager]);
|
||||
|
||||
const Notification = customizationService.getCustomization('ui.notificationComponent');
|
||||
// Set up the window level action menu in the viewport action corners.
|
||||
useEffect(() => {
|
||||
// Doing an === check here because the default config value when not set is true
|
||||
if (appConfig.addWindowLevelActionMenu === false) {
|
||||
return;
|
||||
}
|
||||
|
||||
const location = viewportActionCornersService.LOCATIONS.topRight;
|
||||
|
||||
// TODO: In the future we should consider using the customization service
|
||||
// to determine if and in which corner various action components should go.
|
||||
viewportActionCornersService.addComponent({
|
||||
viewportId,
|
||||
id: 'windowLevelActionMenu',
|
||||
component: getWindowLevelActionMenu({
|
||||
viewportId,
|
||||
element: elementRef.current,
|
||||
displaySets,
|
||||
servicesManager,
|
||||
commandsManager,
|
||||
location,
|
||||
verticalDirection: AllInOneMenu.VerticalDirection.TopToBottom,
|
||||
horizontalDirection: AllInOneMenu.HorizontalDirection.RightToLeft,
|
||||
}),
|
||||
location,
|
||||
});
|
||||
|
||||
viewportActionCornersService.addComponent({
|
||||
viewportId,
|
||||
id: 'segmentation',
|
||||
component: getViewportDataOverlaySettingsMenu({
|
||||
viewportId,
|
||||
element: elementRef.current,
|
||||
displaySets,
|
||||
servicesManager,
|
||||
commandsManager,
|
||||
location,
|
||||
}),
|
||||
location,
|
||||
});
|
||||
}, [
|
||||
displaySets,
|
||||
viewportId,
|
||||
viewportActionCornersService,
|
||||
servicesManager,
|
||||
commandsManager,
|
||||
appConfig,
|
||||
]);
|
||||
|
||||
const { ref: resizeRef } = useResizeDetector({
|
||||
onResize,
|
||||
});
|
||||
|
||||
return (
|
||||
<React.Fragment>
|
||||
@@ -340,12 +381,9 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
style={{ height: '100%', width: '100%' }}
|
||||
onContextMenu={e => e.preventDefault()}
|
||||
onMouseDown={e => e.preventDefault()}
|
||||
data-viewportId={viewportId}
|
||||
ref={el => {
|
||||
resizeRef.current = el;
|
||||
elementRef.current = el;
|
||||
if (el) {
|
||||
viewportRef.register(el);
|
||||
}
|
||||
}}
|
||||
></div>
|
||||
<CornerstoneOverlays
|
||||
@@ -387,52 +425,95 @@ const OHIFCornerstoneViewport = React.memo(
|
||||
areEqual
|
||||
);
|
||||
|
||||
// Helper function to handle jumping to measurements
|
||||
function handleJumpToMeasurement(event, elementRef, viewportId, cornerstoneViewportService) {
|
||||
const { measurement, isConsumed } = event;
|
||||
if (!measurement || isConsumed) {
|
||||
return;
|
||||
}
|
||||
function _subscribeToJumpToMeasurementEvents(elementRef, viewportId, servicesManager) {
|
||||
const { measurementService, cornerstoneViewportService } = servicesManager.services;
|
||||
|
||||
const enabledElement = getEnabledElement(elementRef.current);
|
||||
|
||||
if (!enabledElement) {
|
||||
return;
|
||||
}
|
||||
|
||||
const viewport = enabledElement.viewport as csTypes.IStackViewport | csTypes.IVolumeViewport;
|
||||
|
||||
const { metadata, displaySetInstanceUID } = measurement;
|
||||
|
||||
const viewportDisplaySets = cornerstoneViewportService.getViewportDisplaySets(viewportId);
|
||||
|
||||
const showingDisplaySet = viewportDisplaySets.find(
|
||||
ds => ds.displaySetInstanceUID === displaySetInstanceUID
|
||||
const { unsubscribe } = measurementService.subscribe(
|
||||
MeasurementService.EVENTS.JUMP_TO_MEASUREMENT_VIEWPORT,
|
||||
props => {
|
||||
cacheJumpToMeasurementEvent = props;
|
||||
const { viewportId: jumpId, measurement, isConsumed } = props;
|
||||
if (!measurement || isConsumed) {
|
||||
return;
|
||||
}
|
||||
if (cacheJumpToMeasurementEvent.cornerstoneViewport === undefined) {
|
||||
// Decide on which viewport should handle this
|
||||
cacheJumpToMeasurementEvent.cornerstoneViewport =
|
||||
cornerstoneViewportService.getViewportIdToJump(jumpId, {
|
||||
displaySetInstanceUID: measurement.displaySetInstanceUID,
|
||||
...measurement.metadata,
|
||||
referencedImageId:
|
||||
measurement.referencedImageId || measurement.metadata?.referencedImageId,
|
||||
});
|
||||
}
|
||||
if (cacheJumpToMeasurementEvent.cornerstoneViewport !== viewportId) {
|
||||
return;
|
||||
}
|
||||
_jumpToMeasurement(measurement, elementRef, viewportId, servicesManager);
|
||||
}
|
||||
);
|
||||
|
||||
let metadataToUse = metadata;
|
||||
// if it is not showing the displaySet we need to remove the FOR from the metadata
|
||||
if (!showingDisplaySet) {
|
||||
metadataToUse = {
|
||||
...metadata,
|
||||
FrameOfReferenceUID: undefined,
|
||||
};
|
||||
}
|
||||
return unsubscribe;
|
||||
}
|
||||
|
||||
// Todo: make it work with cases where we want to define FOR based measurements too
|
||||
if (!viewport.isReferenceViewable(metadataToUse, WITH_NAVIGATION)) {
|
||||
// Check if there is a queued jumpToMeasurement event
|
||||
function _checkForCachedJumpToMeasurementEvents(
|
||||
elementRef,
|
||||
viewportId,
|
||||
displaySets,
|
||||
servicesManager
|
||||
) {
|
||||
if (!cacheJumpToMeasurementEvent) {
|
||||
return;
|
||||
}
|
||||
if (cacheJumpToMeasurementEvent.isConsumed) {
|
||||
cacheJumpToMeasurementEvent = null;
|
||||
return;
|
||||
}
|
||||
const displaysUIDs = displaySets.map(displaySet => displaySet.displaySetInstanceUID);
|
||||
if (!displaysUIDs?.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
try {
|
||||
viewport.setViewReference(metadata);
|
||||
viewport.render();
|
||||
} catch (e) {
|
||||
console.warn('Unable to apply', metadata, e);
|
||||
// Jump to measurement if the measurement exists
|
||||
const { measurement } = cacheJumpToMeasurementEvent;
|
||||
if (measurement && elementRef) {
|
||||
if (displaysUIDs.includes(measurement?.displaySetInstanceUID)) {
|
||||
_jumpToMeasurement(measurement, elementRef, viewportId, servicesManager);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
cs3DTools.annotation.selection.setAnnotationSelected(measurement.uid);
|
||||
event?.consume?.();
|
||||
function _jumpToMeasurement(measurement, targetElementRef, viewportId, servicesManager) {
|
||||
const { viewportGridService } = servicesManager.services;
|
||||
|
||||
const targetElement = targetElementRef.current;
|
||||
|
||||
// Todo: setCornerstoneMeasurementActive should be handled by the toolGroupManager
|
||||
// to set it properly
|
||||
// setCornerstoneMeasurementActive(measurement);
|
||||
|
||||
viewportGridService.setActiveViewportId(viewportId);
|
||||
|
||||
const enabledElement = getEnabledElement(targetElement);
|
||||
|
||||
if (enabledElement) {
|
||||
// See how the jumpToSlice() of Cornerstone3D deals with imageIdx param.
|
||||
const viewport = enabledElement.viewport as csTypes.IStackViewport | csTypes.IVolumeViewport;
|
||||
|
||||
const { metadata } = measurement;
|
||||
if (!viewport.isReferenceViewable(metadata, { withNavigation: true, withOrientation: true })) {
|
||||
console.log("Reference isn't viewable, postponing until updated");
|
||||
return;
|
||||
}
|
||||
|
||||
viewport.setViewReference(metadata);
|
||||
|
||||
cs3DTools.annotation.selection.setAnnotationSelected(measurement.uid);
|
||||
// Jump to measurement consumed, remove.
|
||||
cacheJumpToMeasurementEvent?.consume?.();
|
||||
cacheJumpToMeasurementEvent = null;
|
||||
}
|
||||
}
|
||||
|
||||
function _rehydrateSynchronizers(viewportId: string, syncGroupService: any) {
|
||||
@@ -495,18 +576,22 @@ OHIFCornerstoneViewport.displayName = 'OHIFCornerstoneViewport';
|
||||
|
||||
function areEqual(prevProps, nextProps) {
|
||||
if (nextProps.needsRerendering) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: needsRerendering');
|
||||
return false;
|
||||
}
|
||||
|
||||
if (prevProps.displaySets.length !== nextProps.displaySets.length) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: displaySets length change');
|
||||
return false;
|
||||
}
|
||||
|
||||
if (prevProps.viewportOptions.orientation !== nextProps.viewportOptions.orientation) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: orientation change');
|
||||
return false;
|
||||
}
|
||||
|
||||
if (prevProps.viewportOptions.toolGroupId !== nextProps.viewportOptions.toolGroupId) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: toolGroupId change');
|
||||
return false;
|
||||
}
|
||||
|
||||
@@ -514,10 +599,12 @@ function areEqual(prevProps, nextProps) {
|
||||
nextProps.viewportOptions.viewportType &&
|
||||
prevProps.viewportOptions.viewportType !== nextProps.viewportOptions.viewportType
|
||||
) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: viewportType change');
|
||||
return false;
|
||||
}
|
||||
|
||||
if (nextProps.viewportOptions.needsRerendering) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: viewportOptions.needsRerendering');
|
||||
return false;
|
||||
}
|
||||
|
||||
@@ -525,6 +612,7 @@ function areEqual(prevProps, nextProps) {
|
||||
const nextDisplaySets = nextProps.displaySets;
|
||||
|
||||
if (prevDisplaySets.length !== nextDisplaySets.length) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: displaySets length mismatch');
|
||||
return false;
|
||||
}
|
||||
|
||||
@@ -537,11 +625,13 @@ function areEqual(prevProps, nextProps) {
|
||||
);
|
||||
|
||||
if (!foundDisplaySet) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: displaySet not found');
|
||||
return false;
|
||||
}
|
||||
|
||||
// check they contain the same image
|
||||
if (foundDisplaySet.images?.length !== prevDisplaySet.images?.length) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: images length mismatch');
|
||||
return false;
|
||||
}
|
||||
|
||||
@@ -549,6 +639,7 @@ function areEqual(prevProps, nextProps) {
|
||||
if (foundDisplaySet.images?.length) {
|
||||
for (let j = 0; j < foundDisplaySet.images.length; j++) {
|
||||
if (foundDisplaySet.images[j].imageId !== prevDisplaySet.images[j].imageId) {
|
||||
console.debug('OHIFCornerstoneViewport: Rerender caused by: imageId mismatch');
|
||||
return false;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -3,17 +3,14 @@ import { vec3 } from 'gl-matrix';
|
||||
import PropTypes from 'prop-types';
|
||||
import { metaData, Enums, utilities } from '@cornerstonejs/core';
|
||||
import type { ImageSliceData } from '@cornerstonejs/core/types';
|
||||
import { ViewportOverlay } from '@ohif/ui-next';
|
||||
import { ViewportOverlay } from '@ohif/ui';
|
||||
import type { InstanceMetadata } from '@ohif/core/src/types';
|
||||
import { formatDICOMDate, formatDICOMTime, formatNumberPrecision } from './utils';
|
||||
import { utils } from '@ohif/core';
|
||||
import { formatPN, formatDICOMDate, formatDICOMTime, formatNumberPrecision } from './utils';
|
||||
import { StackViewportData, VolumeViewportData } from '../../types/CornerstoneCacheService';
|
||||
|
||||
import './CustomizableViewportOverlay.css';
|
||||
import { useViewportRendering } from '../../hooks';
|
||||
|
||||
const EPSILON = 1e-4;
|
||||
const { formatPN } = utils;
|
||||
|
||||
type ViewportData = StackViewportData | VolumeViewportData;
|
||||
|
||||
@@ -48,6 +45,80 @@ const OverlayItemComponents = {
|
||||
'ohif.overlayItem.instanceNumber': InstanceNumberOverlayItem,
|
||||
};
|
||||
|
||||
const studyDateItem = {
|
||||
id: 'StudyDate',
|
||||
customizationType: 'ohif.overlayItem',
|
||||
label: '',
|
||||
title: 'Study date',
|
||||
condition: ({ referenceInstance }) => referenceInstance?.StudyDate,
|
||||
contentF: ({ referenceInstance, formatters: { formatDate } }) =>
|
||||
formatDate(referenceInstance.StudyDate),
|
||||
};
|
||||
|
||||
const seriesDescriptionItem = {
|
||||
id: 'SeriesDescription',
|
||||
customizationType: 'ohif.overlayItem',
|
||||
label: '',
|
||||
title: 'Series description',
|
||||
condition: ({ referenceInstance }) => {
|
||||
return referenceInstance && referenceInstance.SeriesDescription;
|
||||
},
|
||||
contentF: ({ referenceInstance }) => referenceInstance.SeriesDescription,
|
||||
};
|
||||
|
||||
const topLeftItems = {
|
||||
id: 'cornerstoneOverlayTopLeft',
|
||||
items: [studyDateItem, seriesDescriptionItem],
|
||||
};
|
||||
|
||||
const topRightItems = { id: 'cornerstoneOverlayTopRight', items: [] };
|
||||
|
||||
const bottomLeftItems = {
|
||||
id: 'cornerstoneOverlayBottomLeft',
|
||||
items: [
|
||||
{
|
||||
id: 'WindowLevel',
|
||||
customizationType: 'ohif.overlayItem.windowLevel',
|
||||
},
|
||||
{
|
||||
id: 'ZoomLevel',
|
||||
customizationType: 'ohif.overlayItem.zoomLevel',
|
||||
condition: props => {
|
||||
const activeToolName = props.toolGroupService.getActiveToolForViewport(props.viewportId);
|
||||
return activeToolName === 'Zoom';
|
||||
},
|
||||
},
|
||||
],
|
||||
};
|
||||
|
||||
const bottomRightItems = {
|
||||
id: 'cornerstoneOverlayBottomRight',
|
||||
items: [
|
||||
{
|
||||
id: 'InstanceNumber',
|
||||
customizationType: 'ohif.overlayItem.instanceNumber',
|
||||
},
|
||||
],
|
||||
};
|
||||
|
||||
/**
|
||||
* The @ohif/cornerstoneOverlay is a default value for a customization
|
||||
* for the cornerstone overlays. The intent is to allow it to be extended
|
||||
* without needing to re-write the individual overlays by using the append
|
||||
* mechanism. Individual attributes can be modified individually without
|
||||
* affecting the other items by using the append as well, with position
|
||||
* based replacement.
|
||||
* This is used as a default in the getCustomizationModule so that it
|
||||
* is available early for additional customization extensions.
|
||||
*/
|
||||
const CornerstoneOverlay = {
|
||||
id: '@ohif/cornerstoneOverlay',
|
||||
topLeftItems,
|
||||
topRightItems,
|
||||
bottomLeftItems,
|
||||
bottomRightItems,
|
||||
};
|
||||
|
||||
/**
|
||||
* Customizable Viewport Overlay
|
||||
*/
|
||||
@@ -68,21 +139,28 @@ function CustomizableViewportOverlay({
|
||||
servicesManager.services;
|
||||
const [voi, setVOI] = useState({ windowCenter: null, windowWidth: null });
|
||||
const [scale, setScale] = useState(1);
|
||||
const { isViewportBackgroundLight: isLight } = useViewportRendering(viewportId);
|
||||
const { imageIndex } = imageSliceData;
|
||||
|
||||
// The new customization is 'cornerstoneOverlay', with an append or replace
|
||||
// on the individual items rather than defining individual items.
|
||||
const cornerstoneOverlay = customizationService.getCustomization('@ohif/cornerstoneOverlay');
|
||||
|
||||
// Historical usage defined the overlays as separate items due to lack of
|
||||
// append functionality. This code enables the historical usage, but
|
||||
// the recommended functionality is to append to the default values in
|
||||
// cornerstoneOverlay rather than defining individual items.
|
||||
const topLeftCustomization = customizationService.getCustomization('viewportOverlay.topLeft');
|
||||
const topRightCustomization = customizationService.getCustomization('viewportOverlay.topRight');
|
||||
const bottomLeftCustomization = customizationService.getCustomization(
|
||||
'viewportOverlay.bottomLeft'
|
||||
);
|
||||
const bottomRightCustomization = customizationService.getCustomization(
|
||||
'viewportOverlay.bottomRight'
|
||||
);
|
||||
const topLeftCustomization =
|
||||
customizationService.getCustomization('cornerstoneOverlayTopLeft') ||
|
||||
cornerstoneOverlay?.topLeftItems;
|
||||
const topRightCustomization =
|
||||
customizationService.getCustomization('cornerstoneOverlayTopRight') ||
|
||||
cornerstoneOverlay?.topRightItems;
|
||||
const bottomLeftCustomization =
|
||||
customizationService.getCustomization('cornerstoneOverlayBottomLeft') ||
|
||||
cornerstoneOverlay?.bottomLeftItems;
|
||||
const bottomRightCustomization =
|
||||
customizationService.getCustomization('cornerstoneOverlayBottomRight') ||
|
||||
cornerstoneOverlay?.bottomRightItems;
|
||||
|
||||
const instanceNumber = useMemo(
|
||||
() =>
|
||||
@@ -172,7 +250,6 @@ function CustomizableViewportOverlay({
|
||||
viewportId,
|
||||
servicesManager,
|
||||
customization: item,
|
||||
isLight,
|
||||
formatters: {
|
||||
formatPN,
|
||||
formatDate: formatDICOMDate,
|
||||
@@ -185,8 +262,8 @@ function CustomizableViewportOverlay({
|
||||
return null;
|
||||
}
|
||||
|
||||
const { inheritsFrom } = item;
|
||||
const OverlayItemComponent = OverlayItemComponents[inheritsFrom];
|
||||
const { customizationType } = item;
|
||||
const OverlayItemComponent = OverlayItemComponents[customizationType];
|
||||
|
||||
if (OverlayItemComponent) {
|
||||
return <OverlayItemComponent {...overlayItemProps} />;
|
||||
@@ -214,6 +291,10 @@ function CustomizableViewportOverlay({
|
||||
|
||||
const getContent = useCallback(
|
||||
(customization, keyPrefix) => {
|
||||
if (!customization?.items) {
|
||||
return null;
|
||||
}
|
||||
const { items } = customization;
|
||||
const props = {
|
||||
...displaySetProps,
|
||||
formatters: { formatDate: formatDICOMDate },
|
||||
@@ -222,12 +303,11 @@ function CustomizableViewportOverlay({
|
||||
instanceNumber,
|
||||
viewportId,
|
||||
toolGroupService,
|
||||
isLight,
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
{customization.map((item, index) => (
|
||||
{items.map((item, index) => (
|
||||
<div key={`${keyPrefix}_${index}`}>
|
||||
{((!item?.condition || item.condition(props)) && _renderOverlayItem(item, props)) ||
|
||||
null}
|
||||
@@ -245,8 +325,6 @@ function CustomizableViewportOverlay({
|
||||
topRight={getContent(topRightCustomization, 'topRightOverlayItem')}
|
||||
bottomLeft={getContent(bottomLeftCustomization, 'bottomLeftOverlayItem')}
|
||||
bottomRight={getContent(bottomRightCustomization, 'bottomRightOverlayItem')}
|
||||
color={isLight ? 'text-neutral-dark' : 'text-neutral-light'}
|
||||
shadowClass={isLight ? 'shadow-light' : 'shadow-dark'}
|
||||
/>
|
||||
);
|
||||
}
|
||||
@@ -374,14 +452,13 @@ function OverlayItem(props) {
|
||||
title={title}
|
||||
>
|
||||
{label ? <span className="mr-1 shrink-0">{label}</span> : null}
|
||||
<span className="ml-0 mr-2 shrink-0">{value}</span>
|
||||
<span className="ml-1 mr-2 shrink-0">{value}</span>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Window Level / Center Overlay item
|
||||
* //
|
||||
*/
|
||||
function VOIOverlayItem({ voi, customization }: OverlayItemProps) {
|
||||
const { windowWidth, windowCenter } = voi;
|
||||
@@ -394,10 +471,10 @@ function VOIOverlayItem({ voi, customization }: OverlayItemProps) {
|
||||
className="overlay-item flex flex-row"
|
||||
style={{ color: customization?.color }}
|
||||
>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.70]">W:</span>
|
||||
<span className="mr-2.5 shrink-0">{windowWidth.toFixed(0)}</span>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.70]">L:</span>
|
||||
<span className="shrink-0">{windowCenter.toFixed(0)}</span>
|
||||
<span className="mr-1 shrink-0">W:</span>
|
||||
<span className="ml-1 mr-2 shrink-0">{windowWidth.toFixed(0)}</span>
|
||||
<span className="mr-1 shrink-0">L:</span>
|
||||
<span className="ml-1 shrink-0">{windowCenter.toFixed(0)}</span>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
@@ -411,7 +488,7 @@ function ZoomOverlayItem({ scale, customization }: OverlayItemProps) {
|
||||
className="overlay-item flex flex-row"
|
||||
style={{ color: (customization && customization.color) || undefined }}
|
||||
>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.70]">Zoom:</span>
|
||||
<span className="mr-1 shrink-0">Zoom:</span>
|
||||
<span>{scale.toFixed(2)}x</span>
|
||||
</div>
|
||||
);
|
||||
@@ -435,7 +512,7 @@ function InstanceNumberOverlayItem({
|
||||
<span>
|
||||
{instanceNumber !== undefined && instanceNumber !== null ? (
|
||||
<>
|
||||
<span className="mr-0.5 shrink-0 opacity-[0.70]">I:</span>
|
||||
<span className="mr-1 shrink-0">I:</span>
|
||||
<span>{`${instanceNumber} (${imageIndex + 1}/${numberOfSlices})`}</span>
|
||||
</>
|
||||
) : (
|
||||
@@ -454,4 +531,4 @@ CustomizableViewportOverlay.propTypes = {
|
||||
|
||||
export default CustomizableViewportOverlay;
|
||||
|
||||
export { CustomizableViewportOverlay };
|
||||
export { CustomizableViewportOverlay, CornerstoneOverlay };
|
||||
@@ -1,7 +1,7 @@
|
||||
import React, { useEffect } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { Enums, VolumeViewport3D, utilities as csUtils } from '@cornerstonejs/core';
|
||||
import { ImageScrollbar } from '@ohif/ui-next';
|
||||
import { ImageScrollbar } from '@ohif/ui';
|
||||
|
||||
function CornerstoneImageScrollbar({
|
||||
viewportData,
|
||||
@@ -44,17 +44,13 @@ function CornerstoneImageScrollbar({
|
||||
return;
|
||||
}
|
||||
|
||||
try {
|
||||
const imageIndex = viewport.getCurrentImageIdIndex();
|
||||
const numberOfSlices = viewport.getNumberOfSlices();
|
||||
const imageIndex = viewport.getCurrentImageIdIndex();
|
||||
const numberOfSlices = viewport.getNumberOfSlices();
|
||||
|
||||
setImageSliceData({
|
||||
imageIndex: imageIndex,
|
||||
numberOfSlices,
|
||||
});
|
||||
} catch (error) {
|
||||
console.warn(error);
|
||||
}
|
||||
setImageSliceData({
|
||||
imageIndex: imageIndex,
|
||||
numberOfSlices,
|
||||
});
|
||||
}, [viewportId, viewportData]);
|
||||
|
||||
useEffect(() => {
|
||||
@@ -63,7 +59,7 @@ function CornerstoneImageScrollbar({
|
||||
}
|
||||
const { viewportType } = viewportData;
|
||||
const eventId =
|
||||
(viewportType === Enums.ViewportType.STACK && Enums.Events.STACK_NEW_IMAGE) ||
|
||||
(viewportType === Enums.ViewportType.STACK && Enums.Events.STACK_VIEWPORT_SCROLL) ||
|
||||
(viewportType === Enums.ViewportType.ORTHOGRAPHIC && Enums.Events.VOLUME_NEW_IMAGE) ||
|
||||
Enums.Events.IMAGE_RENDERED;
|
||||
|
||||
@@ -72,11 +68,11 @@ function CornerstoneImageScrollbar({
|
||||
if (!viewport || viewport instanceof VolumeViewport3D) {
|
||||
return;
|
||||
}
|
||||
const { imageIndex, newImageIdIndex = imageIndex, imageIdIndex } = event.detail;
|
||||
const { imageIndex, newImageIdIndex = imageIndex } = event.detail;
|
||||
const numberOfSlices = viewport.getNumberOfSlices();
|
||||
// find the index of imageId in the imageIds
|
||||
setImageSliceData({
|
||||
imageIndex: newImageIdIndex ?? imageIdIndex,
|
||||
imageIndex: newImageIdIndex,
|
||||
numberOfSlices,
|
||||
});
|
||||
};
|
||||
|
||||
@@ -3,30 +3,27 @@
|
||||
--marker-height: 100px;
|
||||
--scrollbar-width: 20px;
|
||||
pointer-events: none;
|
||||
font-size: 15px;
|
||||
line-height: 18px;
|
||||
}
|
||||
.ViewportOrientationMarkers .orientation-marker {
|
||||
position: absolute;
|
||||
}
|
||||
.ViewportOrientationMarkers .top-mid {
|
||||
top: 0.38rem;
|
||||
top: 0.6rem;
|
||||
left: 50%;
|
||||
transform: translateX(-50%);
|
||||
}
|
||||
.ViewportOrientationMarkers .left-mid {
|
||||
top: 50%;
|
||||
left: 0.38rem;
|
||||
transform: translateY(-50%);
|
||||
top: 47%;
|
||||
left: 5px;
|
||||
}
|
||||
.ViewportOrientationMarkers .right-mid {
|
||||
top: 50%;
|
||||
top: 47%;
|
||||
left: calc(100% - var(--marker-width) - var(--scrollbar-width));
|
||||
transform: translateY(-50%);
|
||||
}
|
||||
.ViewportOrientationMarkers .bottom-mid {
|
||||
top: calc(100% - var(--marker-height) - 0.6rem);
|
||||
left: 50%;
|
||||
transform: translateX(-50%);
|
||||
left: 47%;
|
||||
}
|
||||
.ViewportOrientationMarkers .right-mid .orientation-marker-value {
|
||||
display: flex;
|
||||
|
||||
@@ -1,17 +1,11 @@
|
||||
import React, { useEffect, useState, useMemo, useRef } from 'react';
|
||||
import React, { useEffect, useState, useMemo } from 'react';
|
||||
import classNames from 'classnames';
|
||||
import {
|
||||
metaData,
|
||||
Enums,
|
||||
Types,
|
||||
getEnabledElement,
|
||||
utilities as coreUtilities,
|
||||
} from '@cornerstonejs/core';
|
||||
import { metaData, Enums, Types, getEnabledElement } from '@cornerstonejs/core';
|
||||
import { utilities } from '@cornerstonejs/tools';
|
||||
import { vec3 } from 'gl-matrix';
|
||||
|
||||
import './ViewportOrientationMarkers.css';
|
||||
import { useViewportRendering } from '../../hooks';
|
||||
|
||||
const { getOrientationStringLPS, invertOrientationStringLPS } = utilities.orientation;
|
||||
|
||||
function ViewportOrientationMarkers({
|
||||
@@ -26,34 +20,8 @@ function ViewportOrientationMarkers({
|
||||
const [rotation, setRotation] = useState(0);
|
||||
const [flipHorizontal, setFlipHorizontal] = useState(false);
|
||||
const [flipVertical, setFlipVertical] = useState(false);
|
||||
const { isViewportBackgroundLight: isLight } = useViewportRendering(viewportId);
|
||||
const { cornerstoneViewportService } = servicesManager.services;
|
||||
|
||||
// Store initial viewUp and viewRight for volume viewports
|
||||
const initialVolumeOrientationRef = useRef<{
|
||||
initialViewUp: number[] | null;
|
||||
initialViewRight: number[] | null;
|
||||
}>({
|
||||
initialViewUp: null,
|
||||
initialViewRight: null,
|
||||
});
|
||||
|
||||
useEffect(() => {
|
||||
initialVolumeOrientationRef.current.initialViewUp = null;
|
||||
initialVolumeOrientationRef.current.initialViewRight = null;
|
||||
|
||||
if (viewportData?.viewportType !== 'stack' && element && getEnabledElement(element)) {
|
||||
const { viewport } = getEnabledElement(element);
|
||||
const { viewUp, viewPlaneNormal } = viewport.getCamera();
|
||||
|
||||
const viewRight = vec3.create();
|
||||
vec3.cross(viewRight, viewUp, viewPlaneNormal);
|
||||
|
||||
initialVolumeOrientationRef.current.initialViewUp = [...viewUp];
|
||||
initialVolumeOrientationRef.current.initialViewRight = [...viewRight];
|
||||
}
|
||||
}, [element, viewportData]);
|
||||
|
||||
useEffect(() => {
|
||||
const cameraModifiedListener = (evt: Types.EventTypes.CameraModifiedEvent) => {
|
||||
const { previousCamera, camera } = evt.detail;
|
||||
@@ -111,21 +79,14 @@ function ViewportOrientationMarkers({
|
||||
return '';
|
||||
}
|
||||
|
||||
if (
|
||||
initialVolumeOrientationRef.current.initialViewUp &&
|
||||
initialVolumeOrientationRef.current.initialViewRight
|
||||
) {
|
||||
// Use initial orientation values for consistency, even as the camera changes
|
||||
columnCosines = [
|
||||
-initialVolumeOrientationRef.current.initialViewUp[0],
|
||||
-initialVolumeOrientationRef.current.initialViewUp[1],
|
||||
-initialVolumeOrientationRef.current.initialViewUp[2],
|
||||
];
|
||||
rowCosines = initialVolumeOrientationRef.current.initialViewRight;
|
||||
} else {
|
||||
console.warn('ViewportOrientationMarkers::No initial orientation values');
|
||||
return '';
|
||||
}
|
||||
const { viewport } = getEnabledElement(element);
|
||||
const { viewUp, viewPlaneNormal } = viewport.getCamera();
|
||||
|
||||
const viewRight = vec3.create();
|
||||
vec3.cross(viewRight, viewUp, viewPlaneNormal);
|
||||
|
||||
columnCosines = [-viewUp[0], -viewUp[1], -viewUp[2]];
|
||||
rowCosines = viewRight;
|
||||
}
|
||||
|
||||
if (
|
||||
@@ -158,9 +119,8 @@ function ViewportOrientationMarkers({
|
||||
className={classNames(
|
||||
'overlay-text',
|
||||
`${m}-mid orientation-marker`,
|
||||
isLight ? 'text-neutral-dark/70' : 'text-neutral-light/70',
|
||||
isLight ? 'shadow-light' : 'shadow-dark',
|
||||
'text-base',
|
||||
'text-aqua-pale',
|
||||
'text-[13px]',
|
||||
'leading-5'
|
||||
)}
|
||||
key={`${m}-mid orientation-marker`}
|
||||
@@ -176,7 +136,6 @@ function ViewportOrientationMarkers({
|
||||
flipHorizontal,
|
||||
orientationMarkers,
|
||||
element,
|
||||
isLight,
|
||||
]);
|
||||
|
||||
return <div className="ViewportOrientationMarkers select-none">{markers}</div>;
|
||||
|
||||
@@ -52,6 +52,31 @@ export function formatDICOMTime(time, strFormat = 'HH:mm:ss') {
|
||||
return moment(time, 'HH:mm:ss').format(strFormat);
|
||||
}
|
||||
|
||||
/**
|
||||
* Formats a patient name for display purposes
|
||||
*
|
||||
* @param {string} name
|
||||
* @returns {string} formatted name.
|
||||
*/
|
||||
export function formatPN(name) {
|
||||
if (!name) {
|
||||
return '';
|
||||
}
|
||||
if (typeof name === 'object') {
|
||||
name = name.Alphabetic;
|
||||
if (!name) {
|
||||
return '';
|
||||
}
|
||||
}
|
||||
|
||||
const cleaned = name
|
||||
.split('^')
|
||||
.filter(s => !!s)
|
||||
.join(', ')
|
||||
.trim();
|
||||
return cleaned === ',' || cleaned === '' ? '' : cleaned;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets compression type
|
||||
*
|
||||
|
||||
File diff suppressed because it is too large.
Load diff
@@ -1,195 +0,0 @@
|
||||
import React from 'react';
|
||||
import { useSystem } from '@ohif/core';
|
||||
import { Accordion, AccordionContent, AccordionItem, AccordionTrigger } from '@ohif/ui-next';
|
||||
import { ChevronDownIcon } from '@radix-ui/react-icons';
|
||||
|
||||
export type AccordionGrouping = {
|
||||
[name: string]: unknown;
|
||||
};
|
||||
|
||||
export type AccordionGroupProps = {
|
||||
grouping: AccordionGrouping;
|
||||
};
|
||||
|
||||
/**
|
||||
* Searches for the required type from the provided allChildren list and
|
||||
* renders them.
|
||||
*/
|
||||
export const CloneChildren = props => {
|
||||
const { group, allChildren, children, childType, defaultTypes } = props;
|
||||
|
||||
const subType = group?.subType;
|
||||
|
||||
for (const child of allChildren) {
|
||||
if (subType && child.props?.subType !== subType) {
|
||||
continue;
|
||||
}
|
||||
if (childType && child.type === childType) {
|
||||
return React.cloneElement(child, { ...props, children: child.props.children });
|
||||
}
|
||||
if (defaultTypes?.indexOf(child.type) === -1) {
|
||||
return childType({ ...props, children: child });
|
||||
}
|
||||
}
|
||||
|
||||
if (!children) {
|
||||
throw new Error(`No children defined for ${props.name} CloneChildren in group ${group?.name}`);
|
||||
}
|
||||
return React.cloneElement(children, props);
|
||||
};
|
||||
|
||||
/** Used to exclude defaults */
|
||||
const DEFAULT_TYPES = [GroupAccordion, Content, Trigger];
|
||||
|
||||
/**
|
||||
* An AccordionGroup is a component that splits a set of items into different
|
||||
* groups according to a set of grouping rules. It then puts the groups
|
||||
* into a set of accordion folds selected from the body of the accordion group,
|
||||
* looking for matching trigger/content sections according to the type definition
|
||||
* in the group with first one found being used.
|
||||
*
|
||||
* This design allows for easy customization of the component by declaring grouping
|
||||
* functions with default grouping setups and then only overriding the specific
|
||||
* children needing to be changed. See the PanelMeasurement for some example
|
||||
* possibilities of how to modify the default grouping, or the test-extension
|
||||
* measurements panel for a practical, working example.
|
||||
*/
|
||||
export function AccordionGroup(props) {
|
||||
const { grouping, items, children, sourceChildren, type } = props;
|
||||
const childProps = useSystem();
|
||||
let defaultValue = props.defaultValue;
|
||||
const groups = grouping.groupingFunction(items, grouping, childProps);
|
||||
|
||||
if (!defaultValue) {
|
||||
const defaultGroup = groups.values().find(group => group.isSelected);
|
||||
defaultValue = defaultGroup?.key || defaultGroup?.title;
|
||||
}
|
||||
|
||||
const valueArr =
|
||||
(Array.isArray(defaultValue) && defaultValue) || (defaultValue && [defaultValue]) || [];
|
||||
const sourceChildrenArr = sourceChildren ? React.Children.toArray(sourceChildren) : [];
|
||||
const childrenArr = children ? React.Children.toArray(children) : [];
|
||||
const allChildren = sourceChildrenArr.concat(childrenArr);
|
||||
|
||||
return (
|
||||
<CloneChildren
|
||||
allChildren={allChildren}
|
||||
groups={groups}
|
||||
childType={GroupAccordion}
|
||||
grouping={grouping}
|
||||
defaultValue={valueArr}
|
||||
name={'grouping ' + grouping.name}
|
||||
>
|
||||
<DefaultAccordion name="DefaultAccordion" />
|
||||
</CloneChildren>
|
||||
);
|
||||
}
|
||||
|
||||
function DefaultAccordion(props) {
|
||||
const { groups, defaultValue, grouping, allChildren, asChild } = props;
|
||||
if (!allChildren || !groups) {
|
||||
return null;
|
||||
}
|
||||
|
||||
if (Boolean(asChild)) {
|
||||
return React.cloneElement(props.children, props);
|
||||
}
|
||||
|
||||
return (
|
||||
<Accordion
|
||||
type={grouping.type || 'multiple'}
|
||||
className="text-white"
|
||||
defaultValue={defaultValue}
|
||||
>
|
||||
{[...groups.entries()].map(([key, group]) => {
|
||||
return (
|
||||
<AccordionItem
|
||||
key={group.key + '-i'}
|
||||
value={group.key}
|
||||
>
|
||||
<CloneChildren
|
||||
allChildren={allChildren}
|
||||
group={group}
|
||||
childType={Trigger}
|
||||
name="AccordionGroup.Trigger"
|
||||
/>
|
||||
<CloneChildren
|
||||
allChildren={allChildren}
|
||||
group={group}
|
||||
childType={Content}
|
||||
defaultTypes={DEFAULT_TYPES}
|
||||
name="AccordionGroup.Content"
|
||||
/>
|
||||
</AccordionItem>
|
||||
);
|
||||
})}
|
||||
</Accordion>
|
||||
);
|
||||
}
|
||||
|
||||
function GroupAccordion(props) {
|
||||
const { groups, children } = props;
|
||||
if (!groups) {
|
||||
return null;
|
||||
}
|
||||
return [...groups.values()].map(group =>
|
||||
React.cloneElement(children, {
|
||||
...props,
|
||||
children: children.props.children,
|
||||
group,
|
||||
...group,
|
||||
key: group.title,
|
||||
})
|
||||
);
|
||||
}
|
||||
|
||||
function Content(props) {
|
||||
const { children, asChild, ...childProps } = props;
|
||||
const { group } = props;
|
||||
Object.assign(childProps, group);
|
||||
|
||||
if (!group) {
|
||||
return null;
|
||||
}
|
||||
if (asChild) {
|
||||
return React.cloneElement(children, { ...group, ...props, children: children.props.children });
|
||||
}
|
||||
return (
|
||||
<AccordionContent>
|
||||
{React.cloneElement(children, { ...group, ...props, children: children.props.children })}
|
||||
</AccordionContent>
|
||||
);
|
||||
}
|
||||
|
||||
function Trigger(props) {
|
||||
const { children, asChild, ...childProps } = props;
|
||||
const { group } = props;
|
||||
Object.assign(childProps, group);
|
||||
|
||||
if (!group) {
|
||||
return null;
|
||||
}
|
||||
if (asChild) {
|
||||
return React.cloneElement(children, childProps);
|
||||
}
|
||||
return (
|
||||
<AccordionTrigger
|
||||
value={group.value}
|
||||
asChild={true}
|
||||
>
|
||||
<div>
|
||||
{React.cloneElement(children, childProps)}
|
||||
<ChevronDownIcon
|
||||
key="chevronDown"
|
||||
className="text-primary h-4 w-4 shrink-0 transition-transform duration-200"
|
||||
/>
|
||||
</div>
|
||||
</AccordionTrigger>
|
||||
);
|
||||
}
|
||||
|
||||
AccordionGroup.Content = Content;
|
||||
AccordionGroup.Trigger = Trigger;
|
||||
AccordionGroup.Accordion = GroupAccordion;
|
||||
|
||||
export default AccordionGroup;
|
||||
@@ -1,4 +0,0 @@
|
||||
export * from './AccordionGroup';
|
||||
import AccordionGroup from './AccordionGroup';
|
||||
|
||||
export default AccordionGroup;
|
||||
+1
-1
@@ -1,6 +1,6 @@
|
||||
import React, { ReactElement } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { useViewportGrid } from '@ohif/ui-next';
|
||||
import { useViewportGrid } from '@ohif/ui';
|
||||
import ViewportWindowLevel from '../ViewportWindowLevel/ViewportWindowLevel';
|
||||
|
||||
const ActiveViewportWindowLevel = ({ servicesManager }: withAppTypes): ReactElement => {
|
||||
|
||||
-116
@@ -1,116 +0,0 @@
|
||||
import { useToolbar, useViewportMousePosition } from '@ohif/core/src/hooks';
|
||||
import React, { useState, useEffect, useRef } from 'react';
|
||||
import { useViewportRendering } from '../../hooks';
|
||||
|
||||
function AdvancedRenderingControls({
|
||||
viewportId,
|
||||
location,
|
||||
buttonSection,
|
||||
}: {
|
||||
viewportId: string;
|
||||
location: number;
|
||||
buttonSection: string;
|
||||
}) {
|
||||
const {
|
||||
onInteraction,
|
||||
toolbarButtons,
|
||||
isItemOpen,
|
||||
isItemLocked,
|
||||
openItem,
|
||||
closeItem,
|
||||
toggleLock,
|
||||
} = useToolbar({
|
||||
buttonSection,
|
||||
});
|
||||
|
||||
const mousePosition = useViewportMousePosition(viewportId);
|
||||
const [isAtBottom, setIsAtBottom] = useState(false);
|
||||
const [showAllIcons, setShowAllIcons] = useState(true);
|
||||
const firstMountRef = useRef(true);
|
||||
const { hasColorbar } = useViewportRendering(viewportId);
|
||||
|
||||
useEffect(() => {
|
||||
if (firstMountRef.current) {
|
||||
firstMountRef.current = false;
|
||||
|
||||
const timer = setTimeout(() => {
|
||||
setShowAllIcons(false);
|
||||
}, 3000);
|
||||
|
||||
return () => clearTimeout(timer);
|
||||
}
|
||||
}, []);
|
||||
|
||||
useEffect(() => {
|
||||
if (!showAllIcons && mousePosition.isInViewport) {
|
||||
if (mousePosition.isInBottomPercentage(10)) {
|
||||
setIsAtBottom(true);
|
||||
} else {
|
||||
setIsAtBottom(false);
|
||||
}
|
||||
}
|
||||
}, [mousePosition, showAllIcons]);
|
||||
|
||||
if (!toolbarButtons?.length) {
|
||||
return null;
|
||||
}
|
||||
|
||||
if (!hasColorbar) {
|
||||
return null;
|
||||
}
|
||||
|
||||
return (
|
||||
<div className="flex flex-row gap-2">
|
||||
{toolbarButtons.map(toolDef => {
|
||||
if (!toolDef) {
|
||||
return null;
|
||||
}
|
||||
|
||||
const { id, Component, componentProps } = toolDef;
|
||||
|
||||
// Enhanced props with state and actions - respecting viewport specificity
|
||||
const enhancedProps = {
|
||||
...componentProps,
|
||||
isOpen: isItemOpen(id, viewportId),
|
||||
isLocked: isItemLocked(id, viewportId),
|
||||
onOpen: () => openItem(id, viewportId),
|
||||
onClose: () => closeItem(id, viewportId),
|
||||
onToggleLock: () => toggleLock(id, viewportId),
|
||||
viewportId,
|
||||
};
|
||||
|
||||
const tool = (
|
||||
<Component
|
||||
key={id}
|
||||
id={id}
|
||||
location={location}
|
||||
onInteraction={args => {
|
||||
onInteraction({
|
||||
...args,
|
||||
itemId: id,
|
||||
viewportId,
|
||||
});
|
||||
}}
|
||||
{...enhancedProps}
|
||||
/>
|
||||
);
|
||||
|
||||
// Always show all icons on first mount for 3 seconds
|
||||
// After that, always show Colorbar, show others only when mouse is at bottom
|
||||
const shouldBeVisible = showAllIcons || id === 'Colorbar' || isAtBottom;
|
||||
|
||||
return (
|
||||
<div
|
||||
key={id}
|
||||
className={shouldBeVisible ? 'opacity-100' : 'pointer-events-none opacity-0'}
|
||||
style={{ transition: 'opacity 0.2s ease-in-out' }}
|
||||
>
|
||||
{tool}
|
||||
</div>
|
||||
);
|
||||
})}
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
export default AdvancedRenderingControls;
|
||||
@@ -1 +0,0 @@
|
||||
export { default } from './AdvancedRenderingControls';
|
||||
@@ -1,5 +1,5 @@
|
||||
import React, { useCallback, useEffect, useState, useRef } from 'react';
|
||||
import { useCine } from '@ohif/ui-next';
|
||||
import { CinePlayer, useCine } from '@ohif/ui';
|
||||
import { Enums, eventTarget, cache } from '@cornerstonejs/core';
|
||||
import { useAppConfig } from '@state';
|
||||
|
||||
@@ -53,13 +53,13 @@ function WrappedCinePlayer({
|
||||
// check if the displaySet is dynamic and set the dynamic info
|
||||
if (displaySet.isDynamicVolume) {
|
||||
const { dynamicVolumeInfo } = displaySet;
|
||||
const numDimensionGroups = dynamicVolumeInfo.timePoints.length;
|
||||
const numTimePoints = dynamicVolumeInfo.timePoints.length;
|
||||
const label = dynamicVolumeInfo.splittingTag;
|
||||
const dimensionGroupNumber = dynamicVolumeInfo.dimensionGroupNumber || 1;
|
||||
const timePointIndex = dynamicVolumeInfo.timePointIndex || 0;
|
||||
setDynamicInfo({
|
||||
volumeId: displaySet.displaySetInstanceUID,
|
||||
dimensionGroupNumber,
|
||||
numDimensionGroups,
|
||||
timePointIndex,
|
||||
numTimePoints,
|
||||
label,
|
||||
});
|
||||
} else {
|
||||
@@ -160,7 +160,8 @@ function RenderCinePlayer({
|
||||
dynamicInfo: dynamicInfoProp,
|
||||
customizationService,
|
||||
}) {
|
||||
const CinePlayerComponent = customizationService.getCustomization('cinePlayer');
|
||||
const { component: CinePlayerComponent = CinePlayer } =
|
||||
customizationService.get('cinePlayer') ?? {};
|
||||
|
||||
const [dynamicInfo, setDynamicInfo] = useState(dynamicInfoProp);
|
||||
|
||||
@@ -176,20 +177,20 @@ function RenderCinePlayer({
|
||||
return;
|
||||
}
|
||||
|
||||
const handleDimensionGroupChange = evt => {
|
||||
const { volumeId, dimensionGroupNumber, numDimensionGroups, splittingTag } = evt.detail;
|
||||
setDynamicInfo({ volumeId, dimensionGroupNumber, numDimensionGroups, label: splittingTag });
|
||||
const handleTimePointIndexChange = evt => {
|
||||
const { volumeId, timePointIndex, numTimePoints, splittingTag } = evt.detail;
|
||||
setDynamicInfo({ volumeId, timePointIndex, numTimePoints, label: splittingTag });
|
||||
};
|
||||
|
||||
eventTarget.addEventListener(
|
||||
Enums.Events.DYNAMIC_VOLUME_DIMENSION_GROUP_CHANGED,
|
||||
handleDimensionGroupChange
|
||||
Enums.Events.DYNAMIC_VOLUME_TIME_POINT_INDEX_CHANGED,
|
||||
handleTimePointIndexChange
|
||||
);
|
||||
|
||||
return () => {
|
||||
eventTarget.removeEventListener(
|
||||
Enums.Events.DYNAMIC_VOLUME_DIMENSION_GROUP_CHANGED,
|
||||
handleDimensionGroupChange
|
||||
Enums.Events.DYNAMIC_VOLUME_TIME_POINT_INDEX_CHANGED,
|
||||
handleTimePointIndexChange
|
||||
);
|
||||
};
|
||||
}, [dynamicInfo]);
|
||||
@@ -199,17 +200,17 @@ function RenderCinePlayer({
|
||||
return;
|
||||
}
|
||||
|
||||
const { volumeId, dimensionGroupNumber, numDimensionGroups, splittingTag } = dynamicInfo || {};
|
||||
const { volumeId, timePointIndex, numTimePoints, splittingTag } = dynamicInfo || {};
|
||||
const volume = cache.getVolume(volumeId, true);
|
||||
volume.dimensionGroupNumber = dimensionGroupNumber;
|
||||
volume.timePointIndex = timePointIndex;
|
||||
|
||||
setDynamicInfo({ volumeId, dimensionGroupNumber, numDimensionGroups, label: splittingTag });
|
||||
setDynamicInfo({ volumeId, timePointIndex, numTimePoints, label: splittingTag });
|
||||
}, []);
|
||||
|
||||
const updateDynamicInfo = useCallback(props => {
|
||||
const { volumeId, dimensionGroupNumber } = props;
|
||||
const { volumeId, timePointIndex } = props;
|
||||
const volume = cache.getVolume(volumeId, true);
|
||||
volume.dimensionGroupNumber = dimensionGroupNumber;
|
||||
volume.timePointIndex = timePointIndex;
|
||||
}, []);
|
||||
|
||||
return (
|
||||
@@ -244,4 +245,4 @@ function RenderCinePlayer({
|
||||
);
|
||||
}
|
||||
|
||||
export default WrappedCinePlayer;
|
||||
export default WrappedCinePlayer;
|
||||
@@ -1,8 +1,6 @@
|
||||
import React, { useCallback, useEffect, useRef, useState, ReactElement } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { useSystem } from '@ohif/core';
|
||||
import { Button } from '@ohif/ui';
|
||||
import { Icons } from '@ohif/ui-next';
|
||||
import { Button, Icon, ProgressLoadingBar } from '@ohif/ui';
|
||||
import DicomFileUploader, {
|
||||
EVENTS,
|
||||
UploadStatus,
|
||||
@@ -41,11 +39,6 @@ function DicomUploadProgress({
|
||||
dicomFileUploaderArr,
|
||||
onComplete,
|
||||
}: DicomUploadProgressProps): ReactElement {
|
||||
const { servicesManager } = useSystem();
|
||||
|
||||
const ProgressLoadingBar =
|
||||
servicesManager.services.customizationService.getCustomization('ui.progressLoadingBar');
|
||||
|
||||
const [totalUploadSize] = useState(
|
||||
dicomFileUploaderArr.reduce((acc, fileUploader) => acc + fileUploader.getFileSize(), 0)
|
||||
);
|
||||
@@ -303,7 +296,7 @@ function DicomUploadProgress({
|
||||
<span
|
||||
className={classNames(
|
||||
NO_WRAP_ELLIPSIS_CLASS_NAMES,
|
||||
'text-primary hover:text-primary-light active:text-aqua-pale ml-auto cursor-pointer'
|
||||
'text-primary-active hover:text-primary-light active:text-aqua-pale ml-auto cursor-pointer'
|
||||
)}
|
||||
onClick={cancelAllUploads}
|
||||
>
|
||||
@@ -320,10 +313,10 @@ function DicomUploadProgress({
|
||||
<div className="ml-auto flex w-6 justify-center">
|
||||
{numFails > 0 && (
|
||||
<div onClick={() => setShowFailedOnly(currentShowFailedOnly => !currentShowFailedOnly)}>
|
||||
<Icons.ByName
|
||||
<Icon
|
||||
className="cursor-pointer"
|
||||
name="icon-status-alert"
|
||||
></Icons.ByName>
|
||||
></Icon>
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
|
||||
@@ -6,7 +6,7 @@ import DicomFileUploader, {
|
||||
UploadRejection,
|
||||
UploadStatus,
|
||||
} from '../../utils/DicomFileUploader';
|
||||
import { Icons } from '@ohif/ui-next';
|
||||
import { Icon } from '@ohif/ui';
|
||||
|
||||
type DicomUploadProgressItemProps = {
|
||||
dicomFileUploader: DicomFileUploader;
|
||||
@@ -54,17 +54,17 @@ const DicomUploadProgressItem = memo(
|
||||
switch (dicomFileUploader.getStatus()) {
|
||||
case UploadStatus.Success:
|
||||
return (
|
||||
<Icons.ByName
|
||||
<Icon
|
||||
name="status-tracked"
|
||||
className="text-primary-light"
|
||||
/>
|
||||
></Icon>
|
||||
);
|
||||
case UploadStatus.InProgress:
|
||||
return <Icons.ByName name="icon-transferring" />;
|
||||
return <Icon name="icon-transferring"></Icon>;
|
||||
case UploadStatus.Failed:
|
||||
return <Icons.ByName name="icon-alert-small" />;
|
||||
return <Icon name="icon-alert-small"></Icon>;
|
||||
case UploadStatus.Cancelled:
|
||||
return <Icons.ByName name="icon-alert-outline" />;
|
||||
return <Icon name="icon-alert-outline"></Icon>;
|
||||
default:
|
||||
return <></>;
|
||||
}
|
||||
@@ -88,8 +88,9 @@ const DicomUploadProgressItem = memo(
|
||||
<div className="w-10 text-right">{percentComplete}%</div>
|
||||
)}
|
||||
<div className="ml-auto flex cursor-pointer">
|
||||
<Icons.Close
|
||||
className="text-primary self-center"
|
||||
<Icon
|
||||
className="text-primary-active self-center"
|
||||
name="close"
|
||||
onClick={cancelUpload}
|
||||
/>
|
||||
</div>
|
||||
|
||||
@@ -1,70 +0,0 @@
|
||||
import React from 'react';
|
||||
import { Accordion, AccordionContent, AccordionItem } from '@ohif/ui-next';
|
||||
|
||||
import PanelAccordionTrigger from './PanelAccordionTrigger';
|
||||
import MeasurementsMenu from './MeasurementsMenu';
|
||||
import { useSystem } from '@ohif/core';
|
||||
|
||||
export function MeasurementItem(props) {
|
||||
const { index, item } = props;
|
||||
return (
|
||||
<PanelAccordionTrigger
|
||||
count={index + 1}
|
||||
text={item.toolName || item.label || item.title}
|
||||
colorHex="#f00"
|
||||
isActive={item.isSelected}
|
||||
menu={MeasurementsMenu}
|
||||
group={{ items: [item], onClick: props.onClick }}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
export default function MeasurementAccordion(props) {
|
||||
const { items } = props;
|
||||
const system = useSystem();
|
||||
|
||||
const onClick = (e, group) => {
|
||||
const { items } = group;
|
||||
// Just jump to the first measurement in the set, and mark that one as active
|
||||
// with the set of items.
|
||||
system.commandsManager.run('jumpToMeasurement', {
|
||||
uid: items[0].uid,
|
||||
displayMeasurements: items,
|
||||
group,
|
||||
});
|
||||
};
|
||||
|
||||
return (
|
||||
<Accordion
|
||||
type="multiple"
|
||||
className="flex-shrink-0 overflow-hidden"
|
||||
>
|
||||
{items.map((item, index) => {
|
||||
const { displayText: details = {} } = item;
|
||||
return (
|
||||
<AccordionItem
|
||||
key={`measurementAccordion:${item.uid}`}
|
||||
value={item.uid}
|
||||
>
|
||||
<MeasurementItem
|
||||
item={item}
|
||||
key={`measurementItem:${item.uid}`}
|
||||
index={index}
|
||||
onClick={onClick}
|
||||
/>
|
||||
<AccordionContent key={`measurementContent:${item.uid}`}>
|
||||
<div className="ml-7 px-2 py-2">
|
||||
<div className="text-secondary-foreground flex items-center gap-1 text-base leading-normal">
|
||||
{details.primary?.length > 0 &&
|
||||
details.primary.map((detail, index) => (
|
||||
<span key={`details:${item.uid}:${index}`}>{detail}</span>
|
||||
))}
|
||||
</div>
|
||||
</div>
|
||||
</AccordionContent>
|
||||
</AccordionItem>
|
||||
);
|
||||
})}
|
||||
</Accordion>
|
||||
);
|
||||
}
|
||||
@@ -1,30 +0,0 @@
|
||||
import React from 'react';
|
||||
import { MeasurementTable } from '@ohif/ui-next';
|
||||
import { useSystem } from '@ohif/core';
|
||||
|
||||
/**
|
||||
* This is a measurement table that is designed to be nested inside
|
||||
* the accordion groups.
|
||||
*/
|
||||
export default function MeasurementTableNested(props) {
|
||||
const { title, items, group, customHeader } = props;
|
||||
const { commandsManager } = useSystem();
|
||||
const onAction = (e, command, uid) => {
|
||||
commandsManager.run(command, { uid, annotationUID: uid, displayMeasurements: items });
|
||||
};
|
||||
|
||||
return (
|
||||
<MeasurementTable
|
||||
title={title ? title : `Measurements`}
|
||||
data={items}
|
||||
onAction={onAction}
|
||||
{...group}
|
||||
key={group.key}
|
||||
>
|
||||
<MeasurementTable.Header key="measurementTableHeader">
|
||||
{customHeader && group.isFirst && customHeader({ ...props, items: props.allItems })}
|
||||
</MeasurementTable.Header>
|
||||
<MeasurementTable.Body key="measurementTableBody" />
|
||||
</MeasurementTable>
|
||||
);
|
||||
}
|
||||
@@ -1,81 +0,0 @@
|
||||
import React, { useState } from 'react';
|
||||
import { useSystem } from '@ohif/core';
|
||||
import {
|
||||
Button,
|
||||
DropdownMenu,
|
||||
DropdownMenuTrigger,
|
||||
DropdownMenuContent,
|
||||
DropdownMenuItem,
|
||||
Icons,
|
||||
} from '@ohif/ui-next';
|
||||
|
||||
export function MeasumentsMenu(props) {
|
||||
const { group, classNames } = props;
|
||||
if (!group.items?.length) {
|
||||
console.log('No items to iterate', group.items);
|
||||
return null;
|
||||
}
|
||||
const { items } = group;
|
||||
const [item] = items;
|
||||
const { isSelected, isVisible } = item;
|
||||
|
||||
const system = useSystem();
|
||||
|
||||
const onAction = (event, command, args?) => {
|
||||
const uid = items.map(item => item.uid);
|
||||
// Some commands use displayMeasurements and some use items
|
||||
system.commandsManager.run(command, {
|
||||
...args,
|
||||
uid,
|
||||
displayMeasurements: items,
|
||||
items,
|
||||
event,
|
||||
});
|
||||
};
|
||||
|
||||
const [isDropdownOpen, setIsDropdownOpen] = useState(false);
|
||||
|
||||
return (
|
||||
<div className={`relative ml-2 inline-flex items-center space-x-1 ${classNames}`}>
|
||||
{/* Visibility Toggle Icon */}
|
||||
<Button
|
||||
size="icon"
|
||||
variant="ghost"
|
||||
className={`h-6 w-6 transition-opacity ${
|
||||
isSelected || !isVisible ? 'opacity-100' : 'opacity-50 group-hover:opacity-100'
|
||||
}`}
|
||||
aria-label={isVisible ? 'Hide' : 'Show'}
|
||||
onClick={e => {
|
||||
e.stopPropagation();
|
||||
onAction(e, ['jumpToMeasurement', 'toggleVisibilityMeasurement']);
|
||||
}}
|
||||
>
|
||||
{isVisible ? <Icons.Hide className="h-6 w-6" /> : <Icons.Show className="h-6 w-6" />}
|
||||
</Button>
|
||||
{/* Actions Dropdown Menu */}
|
||||
<DropdownMenu onOpenChange={open => setIsDropdownOpen(open)}>
|
||||
<DropdownMenuTrigger asChild>
|
||||
<Button
|
||||
size="icon"
|
||||
variant="ghost"
|
||||
className={`h-6 w-6 transition-opacity ${
|
||||
isSelected || isDropdownOpen ? 'opacity-100' : 'opacity-50 group-hover:opacity-100'
|
||||
}`}
|
||||
aria-label="Actions"
|
||||
onClick={e => e.stopPropagation()} // Prevent row selection on button click
|
||||
>
|
||||
<Icons.More className="h-6 w-6" />
|
||||
</Button>
|
||||
</DropdownMenuTrigger>
|
||||
<DropdownMenuContent align="end">
|
||||
<DropdownMenuItem onClick={e => onAction(e, 'removeMeasurement')}>
|
||||
<Icons.Delete className="text-foreground" />
|
||||
<span className="pl-2">Delete</span>
|
||||
</DropdownMenuItem>
|
||||
</DropdownMenuContent>
|
||||
</DropdownMenu>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
export default MeasumentsMenu;
|
||||
@@ -1,82 +0,0 @@
|
||||
import React from 'react';
|
||||
import AccordionGroup from './AccordionGroup';
|
||||
import { utils } from '@ohif/core';
|
||||
import MeasurementTableNested from './MeasurementTableNested';
|
||||
|
||||
const { filterNot, filterAdditionalFindings } = utils.MeasurementFilters;
|
||||
|
||||
export const MeasurementOrAdditionalFindingSets = [
|
||||
{
|
||||
title: 'Measurements',
|
||||
filter: filterNot(filterAdditionalFindings),
|
||||
},
|
||||
{
|
||||
title: 'Additional Findings',
|
||||
filter: filterAdditionalFindings,
|
||||
},
|
||||
];
|
||||
|
||||
/**
|
||||
* Groups measurements by study in order to allow display and saving by study
|
||||
* @param {Object} servicesManager
|
||||
*/
|
||||
export const groupByNamedSets = (items, grouping) => {
|
||||
const groups = new Map();
|
||||
const { namedSets } = grouping;
|
||||
|
||||
for (const namedSet of namedSets) {
|
||||
const name = namedSet.id || namedSet.title;
|
||||
groups.set(name, {
|
||||
...grouping,
|
||||
...namedSet,
|
||||
items: [],
|
||||
isFirst: groups.size === 0,
|
||||
title: name,
|
||||
key: name,
|
||||
});
|
||||
}
|
||||
items.forEach(item => {
|
||||
for (const namedSet of namedSets) {
|
||||
if (namedSet.filter(item)) {
|
||||
const name = namedSet.id || namedSet.title;
|
||||
groups.get(name).items.push(item);
|
||||
return;
|
||||
}
|
||||
}
|
||||
});
|
||||
for (const namedSet of namedSets) {
|
||||
const name = namedSet.id || namedSet.title;
|
||||
if (!groups.get(name).items.length) {
|
||||
groups.delete(name);
|
||||
}
|
||||
}
|
||||
return groups;
|
||||
};
|
||||
|
||||
export function MeasurementsOrAdditionalFindings(props): React.ReactNode {
|
||||
const { items, children, grouping = {}, customHeader, group, actions } = props;
|
||||
|
||||
return (
|
||||
<AccordionGroup
|
||||
grouping={{
|
||||
groupingFunction: groupByNamedSets,
|
||||
name: 'measurementsOrAdditional',
|
||||
namedSets: MeasurementOrAdditionalFindingSets,
|
||||
StudyInstanceUID: group?.StudyInstanceUID,
|
||||
...grouping,
|
||||
}}
|
||||
items={items}
|
||||
sourceChildren={children}
|
||||
>
|
||||
<AccordionGroup.Accordion noWrapper="true">
|
||||
<MeasurementTableNested
|
||||
customHeader={customHeader}
|
||||
allItems={items}
|
||||
actions={actions}
|
||||
/>
|
||||
</AccordionGroup.Accordion>
|
||||
</AccordionGroup>
|
||||
);
|
||||
}
|
||||
|
||||
export default MeasurementsOrAdditionalFindings;
|
||||
@@ -1,168 +0,0 @@
|
||||
import React, { useMemo, useState, useEffect } from 'react';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
import { ViewportActionButton } from '@ohif/ui-next';
|
||||
import { Icons, Tooltip, TooltipTrigger, TooltipContent } from '@ohif/ui-next';
|
||||
import { useSystem } from '@ohif/core/src';
|
||||
import { useViewportDisplaySets } from '../../hooks/useViewportDisplaySets';
|
||||
import { useMeasurementTracking } from '../../hooks/useMeasurementTracking';
|
||||
|
||||
/**
|
||||
* ModalityLoadBadge displays the status and actionable buttons for viewports containing
|
||||
* special displaySets (SR, SEG, RTSTRUCT) or when tracking measurements
|
||||
*/
|
||||
function ModalityLoadBadge({ viewportId }: { viewportId: string }) {
|
||||
const { commandsManager } = useSystem();
|
||||
const { t } = useTranslation('Common');
|
||||
const loadStr = t('LOAD');
|
||||
|
||||
const { isTracked, isLocked } = useMeasurementTracking({ viewportId });
|
||||
|
||||
const { backgroundDisplaySet, overlayDisplaySets } = useViewportDisplaySets(viewportId);
|
||||
|
||||
const [specialDisplaySet, setSpecialDisplaySet] = useState(null);
|
||||
|
||||
const allDisplaySets = useMemo(() => {
|
||||
return [backgroundDisplaySet, ...overlayDisplaySets].filter(Boolean);
|
||||
}, [backgroundDisplaySet, overlayDisplaySets]);
|
||||
|
||||
useEffect(() => {
|
||||
const displaySet = allDisplaySets.find(ds => ds.isOverlayDisplaySet || ds?.Modality === 'SR');
|
||||
|
||||
setSpecialDisplaySet(displaySet || null);
|
||||
}, [allDisplaySets]);
|
||||
|
||||
const statusInfo = useMemo(() => {
|
||||
if (isTracked && !specialDisplaySet) {
|
||||
return {
|
||||
type: 'SR',
|
||||
isHydrated: true,
|
||||
isTracked,
|
||||
displaySet: null,
|
||||
tooltip: 'Currently tracking measurements in this viewport',
|
||||
};
|
||||
}
|
||||
|
||||
if (!specialDisplaySet) {
|
||||
return {
|
||||
type: null,
|
||||
};
|
||||
}
|
||||
|
||||
const type = specialDisplaySet.Modality;
|
||||
const isHydrated = specialDisplaySet.isHydrated || false;
|
||||
let tooltip = null;
|
||||
const isRehydratable = specialDisplaySet.isRehydratable || false;
|
||||
|
||||
if (type === 'SEG') {
|
||||
tooltip = isHydrated
|
||||
? 'This Segmentation is loaded in the segmentation panel'
|
||||
: 'Click LOAD to load segmentation.';
|
||||
} else if (type === 'RTSTRUCT') {
|
||||
tooltip = isHydrated
|
||||
? 'This RTSTRUCT is loaded in the segmentation panel'
|
||||
: 'Click LOAD to load RTSTRUCT.';
|
||||
} else if (type === 'SR') {
|
||||
if (!isRehydratable) {
|
||||
tooltip = 'This structured report is not compatible with this application.';
|
||||
} else if (isRehydratable && isLocked) {
|
||||
tooltip =
|
||||
'This structured report is currently read-only because you are tracking measurements in another viewport.';
|
||||
} else {
|
||||
tooltip = `Click ${loadStr} to restore measurements.`;
|
||||
}
|
||||
}
|
||||
|
||||
return {
|
||||
type,
|
||||
isHydrated,
|
||||
displaySet: specialDisplaySet,
|
||||
isRehydratable,
|
||||
tooltip,
|
||||
};
|
||||
}, [specialDisplaySet, loadStr, isLocked, isTracked]);
|
||||
|
||||
// Nothing to show if there's no special display set type or tracking
|
||||
if (!statusInfo.type && !isTracked) {
|
||||
return null;
|
||||
}
|
||||
|
||||
const StatusIcon = () => {
|
||||
if (statusInfo.type === 'SR') {
|
||||
if (statusInfo.isRehydratable && !isLocked) {
|
||||
return (
|
||||
<Icons.ByName
|
||||
className="text-muted-foreground h-4 w-4"
|
||||
name="status-untracked"
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
if (statusInfo.isRehydratable && isLocked) {
|
||||
return (
|
||||
<Icons.ByName
|
||||
name="status-locked"
|
||||
className="h-4 w-4"
|
||||
/>
|
||||
);
|
||||
} else {
|
||||
return (
|
||||
<Icons.ByName
|
||||
name="status-alert"
|
||||
className="h-4 w-4"
|
||||
/>
|
||||
);
|
||||
}
|
||||
} else {
|
||||
return <Icons.StatusUntracked className="h-4 w-4" />;
|
||||
}
|
||||
};
|
||||
|
||||
const StatusArea = () => {
|
||||
if (!statusInfo.isHydrated) {
|
||||
return (
|
||||
<div className="flex h-6 cursor-default text-sm leading-6 text-white">
|
||||
<div className="bg-customgray-100 flex min-w-[45px] items-center rounded-l-xl rounded-r p-1">
|
||||
<StatusIcon />
|
||||
<span className="ml-1">{statusInfo.type}</span>
|
||||
</div>
|
||||
{/* We don't show the load button for SRs because we handle it in the SR extension
|
||||
via the tracked measurement context that works with state machine, this is not a regression right now */}
|
||||
{statusInfo.type !== 'SR' && (
|
||||
<ViewportActionButton
|
||||
onInteraction={() => {
|
||||
commandsManager.runCommand('hydrateSecondaryDisplaySet', {
|
||||
displaySet: statusInfo.displaySet,
|
||||
viewportId,
|
||||
});
|
||||
}}
|
||||
>
|
||||
{loadStr}
|
||||
</ViewportActionButton>
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
return null;
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
{statusInfo.tooltip && (
|
||||
<Tooltip>
|
||||
<TooltipTrigger asChild>
|
||||
<span>
|
||||
<StatusArea />
|
||||
</span>
|
||||
</TooltipTrigger>
|
||||
<TooltipContent side="bottom">
|
||||
<div>{statusInfo.tooltip}</div>
|
||||
</TooltipContent>
|
||||
</Tooltip>
|
||||
)}
|
||||
{!statusInfo.tooltip && <StatusArea />}
|
||||
</>
|
||||
);
|
||||
}
|
||||
|
||||
export default ModalityLoadBadge;
|
||||
@@ -1 +0,0 @@
|
||||
export { default } from './ModalityLoadBadge';
|
||||
@@ -1,151 +0,0 @@
|
||||
import React, { useCallback, useState } from 'react';
|
||||
import { ViewportActionArrows } from '@ohif/ui-next';
|
||||
import { useSystem } from '@ohif/core/src';
|
||||
import { utils } from '../..';
|
||||
import { useViewportSegmentations } from '../../hooks';
|
||||
import { useMeasurementTracking } from '../../hooks/useMeasurementTracking';
|
||||
import { useViewportDisplaySets } from '../../hooks/useViewportDisplaySets';
|
||||
|
||||
/**
|
||||
* NavigationComponent provides navigation controls for viewports containing
|
||||
* special displaySets (SR, SEG, RTSTRUCT) to navigate between segments or measurements
|
||||
*/
|
||||
function NavigationComponent({ viewportId }: { viewportId: string }) {
|
||||
const { servicesManager } = useSystem();
|
||||
const { segmentationService, cornerstoneViewportService, measurementService } =
|
||||
servicesManager.services;
|
||||
|
||||
// Get tracking information
|
||||
const { isTracked, trackedMeasurementUIDs } = useMeasurementTracking({ viewportId });
|
||||
const { viewportDisplaySets } = useViewportDisplaySets(viewportId);
|
||||
const [measurementSelected, setMeasurementSelected] = useState(0);
|
||||
const isSRDisplaySet = viewportDisplaySets.some(displaySet => displaySet?.Modality === 'SR');
|
||||
const cornerstoneViewport = cornerstoneViewportService.getCornerstoneViewport(viewportId);
|
||||
|
||||
// Get segmentation information
|
||||
const { segmentationsWithRepresentations } = useViewportSegmentations({
|
||||
viewportId,
|
||||
});
|
||||
|
||||
const hasSegmentations = segmentationsWithRepresentations.length > 0;
|
||||
|
||||
// prefer segment navigation if available
|
||||
const navigationMode = hasSegmentations
|
||||
? 'segment'
|
||||
: isSRDisplaySet
|
||||
? 'measurement'
|
||||
: isTracked
|
||||
? 'measurement'
|
||||
: null;
|
||||
|
||||
const handleMeasurementNavigation = useCallback(
|
||||
(direction: number) => {
|
||||
const measurementDisplaySet = viewportDisplaySets.find(
|
||||
displaySet => displaySet?.Modality === 'SR'
|
||||
);
|
||||
|
||||
if (measurementDisplaySet) {
|
||||
const measurements = measurementDisplaySet.measurements;
|
||||
if (measurements.length <= 0) {
|
||||
return;
|
||||
}
|
||||
|
||||
const newIndex = getNextIndex(measurementSelected, direction, measurements.length);
|
||||
setMeasurementSelected(newIndex);
|
||||
|
||||
const measurement = measurements[newIndex];
|
||||
cornerstoneViewport.setViewReference({
|
||||
referencedImageId: measurement.imageId,
|
||||
});
|
||||
return;
|
||||
}
|
||||
|
||||
if (isTracked && trackedMeasurementUIDs.length > 0) {
|
||||
const newIndex = getNextIndex(
|
||||
measurementSelected,
|
||||
direction,
|
||||
trackedMeasurementUIDs.length
|
||||
);
|
||||
setMeasurementSelected(newIndex);
|
||||
measurementService.jumpToMeasurement(viewportId, trackedMeasurementUIDs[newIndex]);
|
||||
}
|
||||
},
|
||||
[
|
||||
viewportId,
|
||||
cornerstoneViewport,
|
||||
measurementSelected,
|
||||
measurementService,
|
||||
isTracked,
|
||||
trackedMeasurementUIDs,
|
||||
viewportDisplaySets,
|
||||
]
|
||||
);
|
||||
|
||||
const handleSegmentNavigation = useCallback(
|
||||
(direction: number) => {
|
||||
if (!segmentationsWithRepresentations.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
const segmentationId = segmentationsWithRepresentations[0].segmentation.segmentationId;
|
||||
|
||||
utils.handleSegmentChange({
|
||||
direction,
|
||||
segmentationId,
|
||||
viewportId,
|
||||
selectedSegmentObjectIndex: 0,
|
||||
segmentationService,
|
||||
});
|
||||
},
|
||||
[segmentationsWithRepresentations, viewportId, segmentationService]
|
||||
);
|
||||
|
||||
// Handle navigation between segments/measurements
|
||||
const handleNavigate = useCallback(
|
||||
(direction: number) => {
|
||||
if (navigationMode === 'segment') {
|
||||
handleSegmentNavigation(direction);
|
||||
} else if (navigationMode === 'measurement') {
|
||||
handleMeasurementNavigation(direction);
|
||||
}
|
||||
},
|
||||
[navigationMode, handleSegmentNavigation, handleMeasurementNavigation]
|
||||
);
|
||||
|
||||
// Only render if we have a navigation mode
|
||||
if (!navigationMode) {
|
||||
return null;
|
||||
}
|
||||
|
||||
return (
|
||||
<ViewportActionArrows
|
||||
onArrowsClick={handleNavigate}
|
||||
className="h-6"
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Calculate the next index with circular navigation support
|
||||
* @param currentIndex Current index position
|
||||
* @param direction Direction of movement (1 for next, -1 for previous)
|
||||
* @param totalItems Total number of items to navigate through
|
||||
* @returns The next index with wrap-around support
|
||||
*/
|
||||
function getNextIndex(currentIndex: number, direction: number, totalItems: number): number {
|
||||
if (totalItems <= 0) {
|
||||
return 0;
|
||||
}
|
||||
|
||||
// Use modulo to handle circular navigation
|
||||
let nextIndex = (currentIndex + direction) % totalItems;
|
||||
|
||||
// Handle negative index when going backwards from index 0
|
||||
if (nextIndex < 0) {
|
||||
nextIndex = totalItems - 1;
|
||||
}
|
||||
|
||||
return nextIndex;
|
||||
}
|
||||
|
||||
export default NavigationComponent;
|
||||
@@ -1,3 +0,0 @@
|
||||
import NavigationComponent from './NavigationComponent';
|
||||
|
||||
export default NavigationComponent;
|
||||
@@ -1,94 +1,23 @@
|
||||
import React, { memo } from 'react';
|
||||
import { ViewportActionCorners, IconPresentationProvider, ToolButton } from '@ohif/ui-next';
|
||||
import { Toolbar } from '@ohif/extension-default/src/Toolbar/Toolbar';
|
||||
import { ButtonLocation } from '@ohif/core/src/services/ToolBarService/ToolbarService';
|
||||
import { useViewportHover } from '../hooks';
|
||||
import React from 'react';
|
||||
import { useViewportActionCornersContext } from '../contextProviders/ViewportActionCornersProvider';
|
||||
import { ViewportActionCorners } from '@ohif/ui';
|
||||
|
||||
export type OHIFViewportActionCornersProps = {
|
||||
viewportId: string;
|
||||
};
|
||||
|
||||
function OHIFViewportActionCornersComponent({ viewportId }: OHIFViewportActionCornersProps) {
|
||||
// Use the viewport hover hook to track if viewport is hovered or active
|
||||
const { isHovered, isActive } = useViewportHover(viewportId);
|
||||
function OHIFViewportActionCorners({ viewportId }: OHIFViewportActionCornersProps) {
|
||||
const [viewportActionCornersState] = useViewportActionCornersContext();
|
||||
|
||||
const shouldShowCorners = isHovered || isActive;
|
||||
|
||||
if (!shouldShowCorners) {
|
||||
if (!viewportActionCornersState[viewportId]) {
|
||||
return null;
|
||||
}
|
||||
|
||||
return (
|
||||
<IconPresentationProvider
|
||||
size="medium"
|
||||
IconContainer={ToolButton}
|
||||
containerProps={{
|
||||
size: 'tiny',
|
||||
className: 'font-normal text-primary hover:bg-primary/25',
|
||||
}}
|
||||
>
|
||||
<ViewportActionCorners.Container>
|
||||
<ViewportActionCorners.TopLeft>
|
||||
<Toolbar
|
||||
buttonSection="viewportActionMenu.topLeft"
|
||||
viewportId={viewportId}
|
||||
location={ButtonLocation.TopLeft}
|
||||
/>
|
||||
</ViewportActionCorners.TopLeft>
|
||||
<ViewportActionCorners.TopMiddle>
|
||||
<Toolbar
|
||||
buttonSection="viewportActionMenu.topMiddle"
|
||||
viewportId={viewportId}
|
||||
location={ButtonLocation.TopMiddle}
|
||||
/>
|
||||
</ViewportActionCorners.TopMiddle>
|
||||
<ViewportActionCorners.TopRight>
|
||||
<Toolbar
|
||||
buttonSection="viewportActionMenu.topRight"
|
||||
viewportId={viewportId}
|
||||
location={ButtonLocation.TopRight}
|
||||
/>
|
||||
</ViewportActionCorners.TopRight>
|
||||
<ViewportActionCorners.LeftMiddle>
|
||||
<Toolbar
|
||||
buttonSection="viewportActionMenu.leftMiddle"
|
||||
viewportId={viewportId}
|
||||
location={ButtonLocation.LeftMiddle}
|
||||
/>
|
||||
</ViewportActionCorners.LeftMiddle>
|
||||
<ViewportActionCorners.RightMiddle>
|
||||
<Toolbar
|
||||
buttonSection="viewportActionMenu.rightMiddle"
|
||||
viewportId={viewportId}
|
||||
location={ButtonLocation.RightMiddle}
|
||||
/>
|
||||
</ViewportActionCorners.RightMiddle>
|
||||
<ViewportActionCorners.BottomLeft>
|
||||
<Toolbar
|
||||
buttonSection="viewportActionMenu.bottomLeft"
|
||||
viewportId={viewportId}
|
||||
location={ButtonLocation.BottomLeft}
|
||||
/>
|
||||
</ViewportActionCorners.BottomLeft>
|
||||
<ViewportActionCorners.BottomMiddle>
|
||||
<Toolbar
|
||||
buttonSection="viewportActionMenu.bottomMiddle"
|
||||
viewportId={viewportId}
|
||||
location={ButtonLocation.BottomMiddle}
|
||||
/>
|
||||
</ViewportActionCorners.BottomMiddle>
|
||||
<ViewportActionCorners.BottomRight>
|
||||
<Toolbar
|
||||
buttonSection="viewportActionMenu.bottomRight"
|
||||
viewportId={viewportId}
|
||||
location={ButtonLocation.BottomRight}
|
||||
/>
|
||||
</ViewportActionCorners.BottomRight>
|
||||
</ViewportActionCorners.Container>
|
||||
</IconPresentationProvider>
|
||||
<ViewportActionCorners
|
||||
cornerComponents={viewportActionCornersState[viewportId]}
|
||||
></ViewportActionCorners>
|
||||
);
|
||||
}
|
||||
|
||||
const OHIFViewportActionCorners = memo(OHIFViewportActionCornersComponent);
|
||||
|
||||
export default OHIFViewportActionCorners;
|
||||
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Show more
Reference in new issue
Block a user