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+35
-27
@@ -48,12 +48,12 @@ jobs:
|
||||
- checkout:
|
||||
post:
|
||||
- git fetch --all
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
# - restore_cache:
|
||||
# name: Restore Yarn and Cypress Package Cache
|
||||
# keys:
|
||||
# # when lock file changes, use increasingly general patterns to restore cache
|
||||
# - yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# - yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
@@ -107,12 +107,12 @@ jobs:
|
||||
post:
|
||||
- git fetch --all
|
||||
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
# - restore_cache:
|
||||
# name: Restore Yarn and Cypress Package Cache
|
||||
# keys:
|
||||
# # when lock file changes, use increasingly general patterns to restore cache
|
||||
# - yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# - yarn-packages-
|
||||
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
@@ -143,12 +143,12 @@ jobs:
|
||||
- checkout:
|
||||
post:
|
||||
- git fetch --all
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
# - restore_cache:
|
||||
# name: Restore Yarn and Cypress Package Cache
|
||||
# keys:
|
||||
# # when lock file changes, use increasingly general patterns to restore cache
|
||||
# - yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# - yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
@@ -237,11 +237,11 @@ jobs:
|
||||
post:
|
||||
- git fetch --all
|
||||
# Use increasingly general patterns to restore cache
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
# - restore_cache:
|
||||
# name: Restore Yarn and Cypress Package Cache
|
||||
# keys:
|
||||
# - yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# - yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
@@ -346,7 +346,9 @@ workflows:
|
||||
record: true
|
||||
store_artifacts: true
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build
|
||||
build:
|
||||
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
yarn run build
|
||||
start: yarn run test:e2e:serve
|
||||
spec: 'cypress/integration/common/**/*,cypress/integration/pwa/**/*'
|
||||
wait-on: 'http://localhost:3000'
|
||||
@@ -372,7 +374,9 @@ workflows:
|
||||
record: true
|
||||
store_artifacts: true
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build:package
|
||||
build:
|
||||
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
yarn run build:package
|
||||
start: yarn run test:e2e:serve
|
||||
spec: 'cypress/integration/common/**/*,cypress/integration/script-tag/**/*'
|
||||
wait-on: 'http://localhost:3000'
|
||||
@@ -403,7 +407,9 @@ workflows:
|
||||
yarn: true
|
||||
store_artifacts: false
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build
|
||||
build:
|
||||
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
yarn run build
|
||||
# start server --> verify running --> percy + chrome + cypress
|
||||
command: yarn run test:e2e:dist
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
@@ -480,7 +486,9 @@ workflows:
|
||||
yarn: true
|
||||
store_artifacts: false
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build
|
||||
build:
|
||||
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
yarn run build
|
||||
# start server --> verify running --> percy + chrome + cypress
|
||||
command: yarn run test:e2e:dist
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
|
||||
+2
-1
@@ -21,7 +21,7 @@
|
||||
|
||||
# Stage 1: Build the application
|
||||
# docker build -t ohif/viewer:latest .
|
||||
FROM node:10.16.3-slim as builder
|
||||
FROM node:15.13.0-slim as builder
|
||||
|
||||
RUN mkdir /usr/src/app
|
||||
WORKDIR /usr/src/app
|
||||
@@ -39,6 +39,7 @@ COPY package.json /usr/src/app/package.json
|
||||
COPY postcss.config.js /usr/src/app/postcss.config.js
|
||||
COPY yarn.lock /usr/src/app/yarn.lock
|
||||
|
||||
RUN apt-get update && apt-get install -y python make g++
|
||||
# Run the install before copying the rest of the files
|
||||
RUN yarn config set workspaces-experimental true
|
||||
RUN yarn install
|
||||
|
||||
@@ -3,6 +3,14 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [2.10.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.6...@ohif/extension-cornerstone@2.10.7) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.5...@ohif/extension-cornerstone@2.10.6) (2021-03-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone",
|
||||
"version": "2.10.6",
|
||||
"version": "2.10.7",
|
||||
"description": "OHIF extension for Cornerstone",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -36,7 +36,7 @@
|
||||
"cornerstone-math": "^0.1.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dcmjs": "0.18.3",
|
||||
"dcmjs": "0.18.4",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"hammerjs": "^2.0.8",
|
||||
"prop-types": "^15.6.2",
|
||||
|
||||
@@ -3,6 +3,14 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.3.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.4...@ohif/extension-dicom-html@1.3.5) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.3...@ohif/extension-dicom-html@1.3.4) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-html",
|
||||
"version": "1.3.4",
|
||||
"version": "1.3.5",
|
||||
"description": "OHIF extension for rendering structured reports to HTML",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -29,7 +29,7 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"dcmjs": "0.18.3",
|
||||
"dcmjs": "0.18.4",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
|
||||
@@ -3,6 +3,14 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.6.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.7...@ohif/extension-dicom-rt@0.6.8) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.6...@ohif/extension-dicom-rt@0.6.7) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-rt",
|
||||
"version": "0.6.7",
|
||||
"version": "0.6.8",
|
||||
"description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -31,7 +31,7 @@
|
||||
"@ohif/core": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"dcmjs": "0.18.3",
|
||||
"dcmjs": "0.18.4",
|
||||
"gl-matrix": "^3.3.0",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
|
||||
@@ -3,6 +3,22 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.6.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.2...@ohif/extension-dicom-segmentation@0.6.3) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.1...@ohif/extension-dicom-segmentation@0.6.2) (2021-03-31)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.0...@ohif/extension-dicom-segmentation@0.6.1) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-segmentation",
|
||||
"version": "0.6.1",
|
||||
"version": "0.6.3",
|
||||
"description": "OHIF extension for viewing segmentations in the 2D MPR view",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -31,7 +31,7 @@
|
||||
"@ohif/core": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"dcmjs": "0.18.3",
|
||||
"dcmjs": "0.18.4",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
|
||||
@@ -289,7 +289,7 @@ const SegmentationPanel = ({
|
||||
/* Map to display representation */
|
||||
const dateStr = `${SeriesDate}:${SeriesTime}`.split('.')[0];
|
||||
const date = moment(dateStr, 'YYYYMMDD:HHmmss');
|
||||
const displayDate = date.format('ddd, MMM Do YYYY');
|
||||
const displayDate = date.format('ddd, MMM Do YYYY, h:mm:ss a');
|
||||
const displayDescription = displaySet.SeriesDescription;
|
||||
|
||||
return {
|
||||
@@ -709,7 +709,7 @@ const _getReferencedSegDisplaysets = (StudyInstanceUID, SeriesInstanceUID) => {
|
||||
referencedDisplaysets.sort((a, b) => {
|
||||
const aNumber = Number(`${a.SeriesDate}${a.SeriesTime}`);
|
||||
const bNumber = Number(`${b.SeriesDate}${b.SeriesTime}`);
|
||||
return aNumber - bNumber;
|
||||
return bNumber - aNumber;
|
||||
});
|
||||
|
||||
return referencedDisplaysets;
|
||||
|
||||
@@ -3,6 +3,14 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.2.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.5...@ohif/extension-dicom-tag-browser@0.2.6) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.4...@ohif/extension-dicom-tag-browser@0.2.5) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-tag-browser",
|
||||
"version": "0.2.5",
|
||||
"version": "0.2.6",
|
||||
"description": "OHIF extension for checking DICOM headers.",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -28,7 +28,7 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^2.6.0",
|
||||
"dcmjs": "0.18.3",
|
||||
"dcmjs": "0.18.4",
|
||||
"react": "^16.8.6"
|
||||
},
|
||||
"dependencies": {
|
||||
|
||||
@@ -3,6 +3,14 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.11.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.4...@ohif/extension-vtk@1.11.5) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.3...@ohif/extension-vtk@1.11.4) (2021-03-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-vtk",
|
||||
"version": "1.11.4",
|
||||
"version": "1.11.5",
|
||||
"description": "OHIF extension for VTK.js",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -35,7 +35,7 @@
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dcmjs": "0.18.3",
|
||||
"dcmjs": "0.18.4",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"i18next": "^17.0.3",
|
||||
"i18next-browser-languagedetector": "^3.0.1",
|
||||
@@ -53,7 +53,7 @@
|
||||
"react-vtkjs-viewport": "^0.14.2"
|
||||
},
|
||||
"devDependencies": {
|
||||
"@ohif/core": "^2.13.3",
|
||||
"@ohif/core": "^2.13.4",
|
||||
"@ohif/ui": "^1.9.1",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
|
||||
@@ -3,6 +3,17 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [2.13.4](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.3...@ohif/core@2.13.4) (2021-04-15)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **wl:** fix metadata provider window level issues after dicomweb update (string vs number) ([8681036](https://github.com/OHIF/Viewers/commit/8681036b2133cfc325658691a256a86b5e36705f))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.3](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.2...@ohif/core@2.13.3) (2021-03-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/core",
|
||||
"version": "2.13.3",
|
||||
"version": "2.13.4",
|
||||
"description": "Generic business logic for web-based medical imaging applications",
|
||||
"author": "OHIF Core Team",
|
||||
"license": "MIT",
|
||||
@@ -39,7 +39,7 @@
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"ajv": "^6.10.0",
|
||||
"dcmjs": "0.18.3",
|
||||
"dcmjs": "0.18.4",
|
||||
"dicomweb-client": "^0.6.0",
|
||||
"immer": "6.0.2",
|
||||
"isomorphic-base64": "^1.0.2",
|
||||
|
||||
@@ -4,6 +4,7 @@ import dicomParser from 'dicom-parser';
|
||||
import getPixelSpacingInformation from '../utils/metadataProvider/getPixelSpacingInformation';
|
||||
import fetchPaletteColorLookupTableData from '../utils/metadataProvider/fetchPaletteColorLookupTableData';
|
||||
import fetchOverlayData from '../utils/metadataProvider/fetchOverlayData';
|
||||
import validNumber from '../utils/metadataProvider/validNumber';
|
||||
|
||||
class MetadataProvider {
|
||||
constructor() {
|
||||
@@ -284,7 +285,7 @@ class MetadataProvider {
|
||||
|
||||
break;
|
||||
case WADO_IMAGE_LOADER_TAGS.VOI_LUT_MODULE:
|
||||
const { WindowCenter, WindowWidth } = instance;
|
||||
let { WindowCenter, WindowWidth } = instance;
|
||||
|
||||
const windowCenter = Array.isArray(WindowCenter)
|
||||
? WindowCenter
|
||||
@@ -294,15 +295,17 @@ class MetadataProvider {
|
||||
: [WindowWidth];
|
||||
|
||||
metadata = {
|
||||
windowCenter,
|
||||
windowWidth,
|
||||
windowCenter: validNumber(windowCenter),
|
||||
windowWidth: validNumber(windowWidth),
|
||||
};
|
||||
|
||||
break;
|
||||
case WADO_IMAGE_LOADER_TAGS.MODALITY_LUT_MODULE:
|
||||
const rescaleSlope = validNumber(instance.RescaleSlope);
|
||||
const rescaleIntercept = validNumber(instance.RescaleIntercept);
|
||||
metadata = {
|
||||
rescaleIntercept: instance.RescaleIntercept,
|
||||
rescaleSlope: instance.RescaleSlope,
|
||||
rescaleIntercept,
|
||||
rescaleSlope,
|
||||
rescaleType: instance.RescaleType,
|
||||
};
|
||||
break;
|
||||
|
||||
@@ -9,7 +9,7 @@ import { SeriesMetadata } from './SeriesMetadata';
|
||||
import { api } from 'dicomweb-client';
|
||||
// - createStacks
|
||||
import { isImage } from '../../utils/isImage';
|
||||
import isDisplaySetReconstructable from '../../utils/isDisplaySetReconstructable';
|
||||
import { isDisplaySetReconstructable, isSpacingUniform } from '../../utils/isDisplaySetReconstructable';
|
||||
import errorHandler from '../../errorHandler';
|
||||
import isLowPriorityModality from '../../utils/isLowPriorityModality';
|
||||
|
||||
@@ -796,7 +796,7 @@ const makeDisplaySet = (series, instances) => {
|
||||
isMultiFrame: isMultiFrame(instance),
|
||||
});
|
||||
|
||||
// Sort the images in this series if needed
|
||||
// Sort the images in this series by instanceNumber
|
||||
const shallSort = true; //!OHIF.utils.ObjectPath.get(Meteor, 'settings.public.ui.sortSeriesByIncomingOrder');
|
||||
if (shallSort) {
|
||||
imageSet.sortBy((a, b) => {
|
||||
@@ -817,19 +817,29 @@ const makeDisplaySet = (series, instances) => {
|
||||
const displayReconstructableInfo = isDisplaySetReconstructable(instances);
|
||||
imageSet.isReconstructable = displayReconstructableInfo.value;
|
||||
|
||||
let displaySpacingInfo = undefined;
|
||||
if (shallSort && imageSet.isReconstructable) {
|
||||
// sort images by image position
|
||||
imageSet.sortByImagePositionPatient();
|
||||
}
|
||||
|
||||
if (displayReconstructableInfo.missingFrames) {
|
||||
// TODO -> This is currently unused, but may be used for reconstructing
|
||||
// Volumes with gaps later on.
|
||||
imageSet.missingFrames = displayReconstructableInfo.missingFrames;
|
||||
// check if the spacing is uniform and update isReconstructable
|
||||
const datasetIs4D = displayReconstructableInfo.warningIssues.find
|
||||
(issue => issue === ReconstructionIssues.DATASET_4D);
|
||||
displaySpacingInfo = isSpacingUniform(imageSet.images, datasetIs4D);
|
||||
imageSet.isReconstructable = displaySpacingInfo.isUniform;
|
||||
|
||||
if (displaySpacingInfo.missingFrames) {
|
||||
// TODO -> This is currently unused, but may be used for reconstructing
|
||||
// Volumes with gaps later on.
|
||||
imageSet.missingFrames = displaySpacingInfo.missingFrames;
|
||||
}
|
||||
}
|
||||
|
||||
if (!imageSet.displayReconstructableInfo) {
|
||||
// It is not reconstrabale Save type of warning
|
||||
imageSet.warningIssues = displayReconstructableInfo.warningIssues;
|
||||
imageSet.warningIssues = displaySpacingInfo ?
|
||||
displayReconstructableInfo.warningIssues.concat(displaySpacingInfo.warningIssues) :
|
||||
displayReconstructableInfo.warningIssues;
|
||||
}
|
||||
|
||||
return imageSet;
|
||||
|
||||
@@ -4,11 +4,11 @@ import { ReconstructionIssues } from './../enums.js';
|
||||
/**
|
||||
* Checks if a series is reconstructable to a 3D volume.
|
||||
*
|
||||
* @param {Object[]} instances An array of `OHIFInstanceMetadata` objects.
|
||||
* @param {Object[]} An array of `OHIFInstanceMetadata` objects.
|
||||
*
|
||||
* @returns {Object} reconstructable value, missingFrames and warningIssues.
|
||||
* @returns {Object} value, warningIssues.
|
||||
*/
|
||||
export default function isDisplaySetReconstructable(instances) {
|
||||
function isDisplaySetReconstructable(instances) {
|
||||
if (!instances.length) {
|
||||
return { value: false };
|
||||
}
|
||||
@@ -28,7 +28,7 @@ export default function isDisplaySetReconstructable(instances) {
|
||||
}
|
||||
|
||||
if (isMultiframe) {
|
||||
return processMultiframe(instances[0]);
|
||||
return processMultiframe();
|
||||
} else {
|
||||
return processSingleframe(instances);
|
||||
}
|
||||
@@ -37,12 +37,10 @@ export default function isDisplaySetReconstructable(instances) {
|
||||
/**
|
||||
* Process reconstructable multiframes checks
|
||||
* TODO: deal with multriframe checks! return false for now as can't reconstruct.
|
||||
*
|
||||
* @param {Object} instanceof `OHIFInstanceMetadata` objects. Currently not used.
|
||||
*
|
||||
* @returns {Object} reconstructable value and warningIssues.
|
||||
* *
|
||||
* @returns {Object} value and warningIssues.
|
||||
*/
|
||||
function processMultiframe(instance) {
|
||||
function processMultiframe() {
|
||||
const warningIssues = [ReconstructionIssues.MULTIFRAMES];
|
||||
return { value: false, warningIssues };
|
||||
}
|
||||
@@ -50,9 +48,9 @@ function processMultiframe(instance) {
|
||||
/**
|
||||
* Process reconstructable single frame checks
|
||||
*
|
||||
* @param {Object[]} instances An array of `OHIFInstanceMetadata` objects.
|
||||
* @param {Object[]} An array of `OHIFInstanceMetadata` objects.
|
||||
*
|
||||
* @returns {Object} reconstructable value, missingFrames and warningIssues.
|
||||
* @returns {Object} value and warningIssues.
|
||||
*/
|
||||
function processSingleframe(instances) {
|
||||
const n = instances.length;
|
||||
@@ -61,7 +59,6 @@ function processSingleframe(instances) {
|
||||
const firstImageColumns = firstImage.Columns;
|
||||
const firstImageSamplesPerPixel = firstImage.SamplesPerPixel;
|
||||
const firstImageOrientationPatient = firstImage.ImageOrientationPatient;
|
||||
const firstImagePositionPatient = firstImage.ImagePositionPatient;
|
||||
|
||||
const warningIssues = [];
|
||||
// Can't reconstruct if we:
|
||||
@@ -90,6 +87,29 @@ function processSingleframe(instances) {
|
||||
}
|
||||
}
|
||||
|
||||
// check if dataset is 4D
|
||||
if (_isDataset4D(instances)) {
|
||||
warningIssues.push(ReconstructionIssues.DATASET_4D);
|
||||
}
|
||||
|
||||
return { value: warningIssues.length === 0 ? true : false, warningIssues };
|
||||
}
|
||||
|
||||
/**
|
||||
* Check is the spacing is uniform.
|
||||
* The input metadata array has to be ordered by image position.
|
||||
*
|
||||
* @param {Object[]} An array of `OHIFInstanceMetadata` objects.
|
||||
* @param {boolean} is the dataset 4D.
|
||||
*
|
||||
* @returns {Object} isUniform, warningIssues and missingFrames
|
||||
*/
|
||||
function isSpacingUniform(instances, datasetIs4D) {
|
||||
const n = instances.length;
|
||||
const firstImage = instances[0].getData().metadata;
|
||||
const firstImagePositionPatient = firstImage.ImagePositionPatient;
|
||||
|
||||
const warningIssues = [];
|
||||
let missingFrames = 0;
|
||||
|
||||
// Check if frame spacing is approximately equal within a spacingTolerance.
|
||||
@@ -115,6 +135,14 @@ function processSingleframe(instances) {
|
||||
ImagePositionPatient,
|
||||
previousImagePositionPatient
|
||||
);
|
||||
|
||||
if (datasetIs4D && spacingBetweenFrames < 1.e-3) {
|
||||
// the dataset is 4D, if the distance is zero, means that we are
|
||||
// checking the 4th dimension. Do not return, since we want still to
|
||||
// check the 3rd dimension spacing.
|
||||
continue;
|
||||
}
|
||||
|
||||
const spacingIssue = _getSpacingIssue(
|
||||
spacingBetweenFrames,
|
||||
averageSpacingBetweenFrames
|
||||
@@ -136,14 +164,10 @@ function processSingleframe(instances) {
|
||||
}
|
||||
}
|
||||
|
||||
// check if dataset is 4D
|
||||
if (_isDataset4D(instances)) {
|
||||
warningIssues.push(ReconstructionIssues.DATASET_4D);
|
||||
}
|
||||
|
||||
return { value: warningIssues.length === 0 ? true : false, missingFrames, warningIssues };
|
||||
return { isUniform: warningIssues.length === 0 ? true : false, missingFrames, warningIssues };
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Check if 4D dataset.
|
||||
*
|
||||
@@ -155,7 +179,7 @@ function processSingleframe(instances) {
|
||||
*
|
||||
* @param {Object[]} instances An array of `OHIFInstanceMetadata` objects.
|
||||
*
|
||||
* @returns {boolean} reconstructable value.
|
||||
* @returns {boolean} dataset4D value.
|
||||
*/
|
||||
function _isDataset4D(instances) {
|
||||
const n = instances.length;
|
||||
@@ -247,3 +271,5 @@ function _getPerpendicularDistance(a, b) {
|
||||
}
|
||||
|
||||
const constructableModalities = ['MR', 'CT', 'PT', 'NM'];
|
||||
|
||||
export {isDisplaySetReconstructable, isSpacingUniform};
|
||||
@@ -0,0 +1,9 @@
|
||||
const validNumber = val => {
|
||||
if (Array.isArray(val)) {
|
||||
return val.map(v => (v !== undefined ? Number(v) : v));
|
||||
} else {
|
||||
return val !== undefined ? Number(val) : val;
|
||||
}
|
||||
};
|
||||
|
||||
export default validNumber;
|
||||
@@ -3,6 +3,22 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [4.9.9](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.8...@ohif/viewer@4.9.9) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.8](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.7...@ohif/viewer@4.9.8) (2021-03-31)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.7](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.6...@ohif/viewer@4.9.7) (2021-03-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/viewer",
|
||||
"version": "4.9.7",
|
||||
"version": "4.9.9",
|
||||
"description": "OHIF Viewer",
|
||||
"author": "OHIF Contributors",
|
||||
"license": "MIT",
|
||||
@@ -49,16 +49,16 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"@ohif/core": "^2.13.3",
|
||||
"@ohif/extension-cornerstone": "^2.10.6",
|
||||
"@ohif/core": "^2.13.4",
|
||||
"@ohif/extension-cornerstone": "^2.10.7",
|
||||
"@ohif/extension-debugging": "^0.2.1",
|
||||
"@ohif/extension-dicom-html": "^1.3.4",
|
||||
"@ohif/extension-dicom-html": "^1.3.5",
|
||||
"@ohif/extension-dicom-microscopy": "^0.52.0",
|
||||
"@ohif/extension-dicom-pdf": "^1.0.6",
|
||||
"@ohif/extension-dicom-rt": "^0.6.7",
|
||||
"@ohif/extension-dicom-segmentation": "^0.6.1",
|
||||
"@ohif/extension-dicom-rt": "^0.6.8",
|
||||
"@ohif/extension-dicom-segmentation": "^0.6.3",
|
||||
"@ohif/extension-lesion-tracker": "^0.2.1",
|
||||
"@ohif/extension-vtk": "^1.11.4",
|
||||
"@ohif/extension-vtk": "^1.11.5",
|
||||
"@ohif/i18n": "^0.53.0",
|
||||
"@ohif/ui": "^1.9.1",
|
||||
"@tanem/react-nprogress": "^1.1.25",
|
||||
@@ -68,7 +68,7 @@
|
||||
"cornerstone-math": "^0.1.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dcmjs": "0.18.3",
|
||||
"dcmjs": "0.18.4",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"dicomweb-client": "^0.4.4",
|
||||
"hammerjs": "^2.0.8",
|
||||
|
||||
@@ -301,6 +301,7 @@ function ViewerRetrieveStudyData({
|
||||
});
|
||||
|
||||
setStudies(studies);
|
||||
setIsStudyLoaded(true);
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
Reference in new issue
Block a user