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Author SHA1 Message Date
ohif-bot 252536a1e6 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.12.1
 - @ohif/extension-dicom-html@1.3.11
 - @ohif/extension-dicom-rt@0.7.1
 - @ohif/extension-dicom-segmentation@0.7.1
 - @ohif/extension-dicom-tag-browser@0.2.12
 - @ohif/extension-vtk@1.12.2
 - @ohif/core@2.15.1
 - @ohif/viewer@4.11.2
2021-09-28 12:14:17 +00:00
Davide Punzo 53b1d71d56 fix regression not showing warnings list on thumbnail for segmentations (#2563)
* fix regression not showing warnings list on thumbnail for segmentations

* update dcmjs version
2021-09-28 14:07:29 +02:00
Erik Ziegler 702d99cb93 Add FUNDING.yml 2021-09-27 14:23:37 +02:00
Alireza bb7b78bf33 chore(github): Create config.yml for issues (#2561)
* chore(github): Create config.yml for issues

* Delete ---support-question.md
2021-09-27 14:20:38 +02:00
ohif-bot b796fc9c62 chore(release): publish [skip ci]
- @ohif/extension-vtk@1.12.1
 - @ohif/ui@1.10.2
 - @ohif/viewer@4.11.1
2021-09-24 11:04:33 +00:00
Erik Ziegler 66c587b139 fix: throttle thumbnail progress updates (#2557) 2021-09-24 12:58:30 +02:00
ohif-bot f6e2e58aad chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.12.0
 - @ohif/extension-debugging@0.3.0
 - @ohif/extension-dicom-pdf@1.1.0
 - @ohif/extension-dicom-rt@0.7.0
 - @ohif/extension-dicom-segmentation@0.7.0
 - @ohif/extension-vtk@1.12.0
 - @ohif/core@2.15.0
 - @ohif/viewer@4.11.0
2021-09-23 16:42:56 +00:00
Erik ZieglerandAlireza 489d4b0584 feat: Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 (#2537)
* feat: bump to prerelease of WADO Image Loader for testing

* switch to released versions

* update react-vtkjs-viewport and fix requestpool usage in StudyPrefetcher

* attempt to fix e2e tests for script-tag usage

* fix e2e test error

* switch to using webpack alias in PWA to use dynamic import version of OHIF

* fix copy plugin usage

* try to fix publicpath issue

* bump to 4.0.3

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2021-09-23 18:37:29 +02:00
ohif-bot 36019156da chore(release): publish [skip ci]
- @ohif/extension-vtk@1.11.18
 - @ohif/core@2.14.1
 - @ohif/ui@1.10.1
 - @ohif/viewer@4.10.1
2021-09-13 13:10:07 +00:00
Igor Octaviano f2a371fc2d Display warning messages if fails to parse sr report (#2543) 2021-09-13 15:06:30 +02:00
ohif-bot ad2f038817 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.11.0
 - @ohif/extension-vtk@1.11.17
 - @ohif/core@2.14.0
 - @ohif/ui@1.10.0
 - @ohif/viewer@4.10.0
2021-09-09 08:02:24 +00:00
Igor OctavianoandAlireza 8f2604509d feat: OHIF-1000: Study prefetcher (#2466)
* Enable study prefetcher and expose configs

* Fix progress for all images

* Enable study loading listener

* Add new default for displaying progress bar for series

* Use events instead of redux to improve performance

* Add documentation, resolve issues with different datasets

* CR Updates

* CR Updates

* CR Updates & Resolve issue when activating both stack and study prefetch

* Add upward and update display set logic

* Add new behavior to prefetching orders

* Rollback display set check and activate cache check

* Remove prefetch check

* Check if displayset has images

* Debounce check cache events

* Remove usued debounce flags

* Ignore prefetching same image

* Use new image instead of image rendered

* Continue prefetch after cache check

* Update prefetch logic after checking cache

* Remove log

* Update displayset count default to 3

* Update netlify config

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2021-09-09 09:58:24 +02:00
ohif-bot ea0963d75f chore(release): publish [skip ci]
- @ohif/extension-dicom-rt@0.6.14
 - @ohif/extension-dicom-segmentation@0.6.11
 - @ohif/extension-vtk@1.11.16
 - @ohif/core@2.13.15
 - @ohif/ui@1.9.3
 - @ohif/viewer@4.9.24
2021-09-03 21:01:01 +00:00
Igor Octaviano 46d5718011 Merge pull request #2491 from OHIF/feat/ohif-2482
OHIF-2482: Add badge numbers for seg and rtstruct
2021-09-03 17:57:42 -03:00
Davide Punzo f8740e04f3 Merge branch 'master' into feat/ohif-2482 2021-09-02 16:08:37 +02:00
ohif-bot 669717d27b chore(release): publish [skip ci]
- @ohif/extension-vtk@1.11.15
 - @ohif/core@2.13.14
 - @ohif/viewer@4.9.23
2021-08-30 13:04:58 +00:00
Alireza 715dfc556a fix: MPR metadata parsing for spacings (#2517)
* fix: MPR metadata parsing for spacings

* fix: OHIF Metadata provider for validNumbers for imagePlaneModule
2021-08-30 09:01:46 -04:00
igoroctaviano f6a0db753a Merge branch 'master' of github.com:OHIF/Viewers into feat/ohif-2482 2021-07-29 09:19:42 -03:00
igoroctaviano 8518e179ee Extract event 2021-07-29 09:18:31 -03:00
igoroctaviano 3f40cdced7 Add badge numbers for seg and rtstruct 2021-07-28 22:15:05 -03:00
72 changed files with 1887 additions and 557 deletions

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+1
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@@ -0,0 +1 @@
custom: https://giving.massgeneral.org/ohif
@@ -1,18 +0,0 @@
---
name: "\U0001F917 Support Question"
about: "I have a question \U0001F4AC"
title: ''
labels: 'Community: Question :question:, Triage :white_flag:'
assignees: ''
---
> :hand: We are a small team with limited resources. Your question is much more
> likely to be answered if it is
> [a good question](https://stackoverflow.com/help/how-to-ask)
**Description**
Questions can often be answered by our documentation. Unable to find an answer
in our docs? We'll try to help. In the meantime, if you answer your own
question, please respond with the answer here so that others may benefit as
well. Better yet, open a PR to expand our docs ^\_^
+5
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@@ -0,0 +1,5 @@
blank_issues_enabled: false
contact_links:
- name: 🤗 Support Question
url: https://community.ohif.org/
about: Please use our forum if you have questions or need help.
+3
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@@ -10,6 +10,9 @@ junit.xml
coverage/
.docz/
*.js.map
.yarn
platform/docs/.docusaurus
platform/ui/storybook-static
# YALC (for Erik)
.yalc
+39 -3
View File
@@ -67,6 +67,33 @@ window.config = {
extensions: [],
showStudyList: true,
filterQueryParam: false,
/**
* Disable caching of servers configuration.
*
* There will be no effect if you update the servers property of this config
* while your application is running because this property is cached in local storage.
*/
disableServersCache: false,
/**
* OHIF's study prefetcher configuration.
*
* @param {boolean} enabled Whether to enable/disable OHIF's study prefetcher
* @param {('all'|'closest'|'downward'|'upward'|'topdown')} order Fetching order: all display sets, the closest ones, downward or top down fashion based on the currently selected display set
* @param {number} displaySetCount How much display sets should be prefetched at once (note: this attribute is ignored if order was set to 'all')
* @param {boolean} preventCache Prevent images to be cached in Cornerstone Tools's request pool manager
* @param {number} prefetchDisplaySetsTimeout Prefetch timeout
* @param {boolean} displayProgress Whether to display or not the progress bar in the display set
* @param {boolean} includeActiveDisplaySet Include or not the active display set while prefetching
*/
studyPrefetcher: {
enabled: true,
order: 'all',
displaySetCount: 1,
preventCache: false,
prefetchDisplaySetsTimeout: 300,
displayProgress: false,
includeActiveDisplaySet: true,
},
servers: {
dicomWeb: [
{
@@ -81,7 +108,14 @@ window.config = {
},
],
},
// Supported Keys: https://craig.is/killing/mice
/**
* Hotkey definitions.
* Supported Keys: https://craig.is/killing/mice
*
* @param {string} commandName
* @param {string} label
* @param {array} keys
*/
hotkeys: [
{ commandName: 'rotateViewportCW', label: 'Rotate Right', keys: ['r'] },
{ commandName: 'rotateViewportCCW', label: 'Rotate Left', keys: ['l'] },
@@ -97,14 +131,16 @@ window.config = {
keys: ['v'],
},
],
/* Configuration passed to the bundled cornerstone extension
/**
* Configuration passed to the bundled cornerstone extension
*
* The cornerstone extension is currently tightly coupled to the platform.
* Until we're able to decouple it, this key will serve as a workaround to
* pass it configuration.
*
* @param {boolean} hideHandles Whether to show/hide annotation "handles"
*/
cornerstoneExtensionConfig: {
/* Whether to show/hide annotation "handles" */
hideHandles: true,
},
};
+37
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@@ -0,0 +1,37 @@
# Viewer: Study Prefetcher & Stack Prefetch
Prefetching the stack of images of the active viewport is enabled by default for
cornerstone viewports via cornerstone tools's stack prefetch functionality.
In order to have a more customizable alternative for prefetching, OHIF provides
a built-in study prefetcher functionality which allows the user to set the order
in which the display sets are prefetched, the granularity, the timeout and
whether or not display a progress bar in the display set (close to the thumbnail
image) in the study browser.
You can customize these options via the viewer's configuration:
```js
window.config = {
/**
* OHIF's study prefetcher configuration.
*
* @param {boolean} enabled Whether to enable/disable OHIF's study prefetcher
* @param {('all'|'closest'|'downward'|'upward'|'topdown')} order Fetching order: all display sets, the closest ones, downward or top down fashion based on the currently selected display set
* @param {number} displaySetCount How much display sets should be prefetched at once (note: this attribute is ignored if order was set to 'all')
* @param {boolean} preventCache Prevent images to be cached in Cornerstone Tools's request pool manager
* @param {number} prefetchDisplaySetsTimeout Prefetch timeout
* @param {boolean} displayProgress Whether to display or not the progress bar in the display set
* @param {boolean} includeActiveDisplaySet Include or not the active display set while prefetching
*/
studyPrefetcher: {
enabled: true,
order: 'all',
displaySetCount: 1,
preventCache: false,
prefetchDisplaySetsTimeout: 300,
displayProgress: false,
includeActiveDisplaySet: true,
},
};
```
+30
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@@ -3,6 +3,36 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [2.12.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.0...@ohif/extension-cornerstone@2.12.1) (2021-09-28)
**Note:** Version bump only for package @ohif/extension-cornerstone
# [2.12.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.11.0...@ohif/extension-cornerstone@2.12.0) (2021-09-23)
### Features
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
# [2.11.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.10...@ohif/extension-cornerstone@2.11.0) (2021-09-09)
### Features
* OHIF-1000: Study prefetcher ([#2466](https://github.com/OHIF/Viewers/issues/2466)) ([8f26045](https://github.com/OHIF/Viewers/commit/8f2604509d24092b721f1333289d838820d68cac))
## [2.10.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.9...@ohif/extension-cornerstone@2.10.10) (2021-07-26)
+23 -2
View File
@@ -85,12 +85,32 @@ Tools can be configured through extension configuration using the tools key:
...
```
## Stack prefetch configuration
Stack prefetch can be configured through extension configuration using the
stackPrefetch key:
```js
...
cornerstoneExtensionConfig: {
stackPrefetch: {
enabled: true,
maxImagesToPrefetch: Infinity,
preserveExistingPool: false,
maxSimultaneousRequests: 20,
},
},
...
```
## Annotate Tools Configuration
*We currently support one property for annotation tools.*
_We currently support one property for annotation tools._
### Hide handles
This extension configuration allows you to toggle on/off handle rendering for all annotate tools:
This extension configuration allows you to toggle on/off handle rendering for
all annotate tools:
```js
...
@@ -119,3 +139,4 @@ This extension configuration allows you to toggle on/off handle rendering for al
[cornerstone-tools]: https://github.com/cornerstonejs/cornerstoneTools
[cornerstone]: https://github.com/cornerstonejs/cornerstone
<!-- prettier-ignore-end -->
```
+8 -8
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone",
"version": "2.10.10",
"version": "2.12.1",
"description": "OHIF extension for Cornerstone",
"author": "OHIF",
"license": "MIT",
@@ -32,12 +32,12 @@
"peerDependencies": {
"@ohif/core": "^0.50.0",
"@ohif/ui": "^0.50.0",
"cornerstone-core": "^2.2.8",
"cornerstone-math": "^0.1.8",
"cornerstone-tools": "^4.20.1",
"cornerstone-wado-image-loader": "^3.1.0",
"dcmjs": "0.18.8",
"dicom-parser": "^1.8.3",
"cornerstone-core": "^2.5.0",
"cornerstone-math": "^0.1.9",
"cornerstone-tools": "^6.0.0",
"cornerstone-wado-image-loader": "^4.0.3",
"dcmjs": "0.18.9",
"dicom-parser": "^1.8.9",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
"react": "^16.8.6",
@@ -51,6 +51,6 @@
"classnames": "^2.2.6",
"lodash.merge": "^4.6.2",
"lodash.throttle": "^4.1.1",
"react-cornerstone-viewport": "4.0.5"
"react-cornerstone-viewport": "4.1.1"
}
}
@@ -53,7 +53,11 @@ const mapStateToProps = (state, ownProps) => {
// Currently justing using escape hatch + commands
// activeTool: activeButton && activeButton.command,
...dataFromStore,
isStackPrefetchEnabled: isActive,
isStackPrefetchEnabled: ownProps.hasOwnProperty('isStackPrefetchEnabled')
? ownProps.isStackPrefetchEnabled
: ownProps.stackPrefetch
? ownProps.stackPrefetch.enabled
: isActive,
isPlaying,
frameRate,
//stack: viewportSpecificData.stack,
@@ -1,6 +1,6 @@
import React, { Component } from 'react';
import OHIFCornerstoneViewportOverlay from './components/OHIFCornerstoneViewportOverlay'
import OHIFCornerstoneViewportOverlay from './components/OHIFCornerstoneViewportOverlay';
import ConnectedCornerstoneViewport from './ConnectedCornerstoneViewport';
import OHIF from '@ohif/core';
import PropTypes from 'prop-types';
@@ -15,6 +15,7 @@ class OHIFCornerstoneViewport extends Component {
static defaultProps = {
customProps: {},
isStackPrefetchEnabled: true,
};
static propTypes = {
@@ -23,6 +24,8 @@ class OHIFCornerstoneViewport extends Component {
viewportIndex: PropTypes.number,
children: PropTypes.node,
customProps: PropTypes.object,
stackPrefetch: PropTypes.object,
isStackPrefetchEnabled: PropTypes.bool,
};
static id = 'OHIFCornerstoneViewport';
@@ -180,7 +183,7 @@ class OHIFCornerstoneViewport extends Component {
if (
displaySet.displaySetInstanceUID !==
prevDisplaySet.displaySetInstanceUID ||
prevDisplaySet.displaySetInstanceUID ||
displaySet.SOPInstanceUID !== prevDisplaySet.SOPInstanceUID ||
displaySet.frameIndex !== prevDisplaySet.frameIndex
) {
@@ -232,7 +235,12 @@ class OHIFCornerstoneViewport extends Component {
};
const warningsOverlay = props => {
return <OHIFCornerstoneViewportOverlay {...props} inconsistencyWarnings={inconsistencyWarnings} />
return (
<OHIFCornerstoneViewportOverlay
{...props}
inconsistencyWarnings={inconsistencyWarnings}
/>
);
};
return (
@@ -244,10 +252,11 @@ class OHIFCornerstoneViewport extends Component {
onNewImageDebounced={newImageHandler}
onNewImageDebounceTime={300}
viewportOverlayComponent={warningsOverlay}
stackPrefetch={this.props.stackPrefetch}
isStackPrefetchEnabled={this.props.isStackPrefetchEnabled}
// ~~ Connected (From REDUX)
// frameRate={frameRate}
// isPlaying={false}
// isStackPrefetchEnabled={true}
// onElementEnabled={() => {}}
// setViewportActive{() => {}}
{...this.props.customProps}
+11 -2
View File
@@ -36,7 +36,7 @@ export default {
preRegistration({ servicesManager, configuration = {} }) {
init({ servicesManager, configuration });
},
getViewportModule({ commandsManager }) {
getViewportModule({ commandsManager, appConfig }) {
const ExtendedOHIFCornerstoneViewport = props => {
/**
* TODO: This appears to be used to set the redux parameters for
@@ -48,8 +48,17 @@ export default {
jumpData.refreshViewports = false;
commandsManager.runCommand('jumpToImage', jumpData);
};
const { studyPrefetcher } = appConfig;
const isStackPrefetchEnabled =
studyPrefetcher && !studyPrefetcher.enabled;
return (
<OHIFCornerstoneViewport {...props} onNewImage={onNewImageHandler} />
<OHIFCornerstoneViewport
{...props}
onNewImage={onNewImageHandler}
isStackPrefetchEnabled={isStackPrefetchEnabled}
/>
);
};
+9 -2
View File
@@ -37,7 +37,14 @@ export default function init({ servicesManager, configuration }) {
}
};
const { csToolsConfig } = configuration;
const {
csToolsConfig,
stackPrefetch = {
maxImagesToPrefetch: Infinity,
preserveExistingPool: false,
maxSimultaneousRequests: 20,
},
} = configuration;
const metadataProvider = OHIF.cornerstone.metadataProvider;
cornerstone.metaData.addProvider(
@@ -52,7 +59,7 @@ export default function init({ servicesManager, configuration }) {
autoResizeViewports: false,
};
initCornerstoneTools(defaultCsToolsConfig);
initCornerstoneTools({ ...defaultCsToolsConfig, ...stackPrefetch });
const toolsGroupedByType = {
touch: [csTools.PanMultiTouchTool, csTools.ZoomTouchPinchTool],
@@ -37,8 +37,8 @@ export default function(configuration = {}) {
// Configure stack prefetch
cornerstoneTools.stackPrefetch.setConfiguration({
maxImagesToPrefetch: Infinity,
preserveExistingPool: false,
maxSimultaneousRequests: 20,
maxImagesToPrefetch: configuration.maxImagesToPrefetch,
preserveExistingPool: configuration.preserveExistingPool,
maxSimultaneousRequests: configuration.maxSimultaneousRequests,
});
}
+11
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@@ -3,6 +3,17 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [0.3.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.2.2...@ohif/extension-debugging@0.3.0) (2021-09-23)
### Features
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
## [0.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.2.1...@ohif/extension-debugging@0.2.2) (2021-06-03)
**Note:** Version bump only for package @ohif/extension-debugging
+2 -2
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-debugging",
"version": "0.2.2",
"version": "0.3.0",
"description": "OHIF extension for debugging.",
"author": "OHIF",
"license": "MIT",
@@ -28,7 +28,7 @@
},
"peerDependencies": {
"@ohif/core": "^2.6.0",
"dicom-parser": "^1.8.3"
"dicom-parser": "^1.8.9"
},
"dependencies": {
"@babel/runtime": "^7.5.5",
+8
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@@ -3,6 +3,14 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [1.3.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.10...@ohif/extension-dicom-html@1.3.11) (2021-09-28)
**Note:** Version bump only for package @ohif/extension-dicom-html
## [1.3.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.9...@ohif/extension-dicom-html@1.3.10) (2021-06-02)
+2 -2
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-dicom-html",
"version": "1.3.10",
"version": "1.3.11",
"description": "OHIF extension for rendering structured reports to HTML",
"author": "OHIF",
"license": "MIT",
@@ -29,7 +29,7 @@
},
"peerDependencies": {
"@ohif/core": "^0.50.0",
"dcmjs": "0.18.8",
"dcmjs": "0.18.9",
"prop-types": "^15.6.2",
"react": "^16.8.6",
"react-dom": "^16.8.6"
+11
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@@ -3,6 +3,17 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [1.1.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.0.6...@ohif/extension-dicom-pdf@1.1.0) (2021-09-23)
### Features
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
## [1.0.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.0.5...@ohif/extension-dicom-pdf@1.0.6) (2020-09-10)
**Note:** Version bump only for package @ohif/extension-dicom-pdf
+2 -2
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-dicom-pdf",
"version": "1.0.6",
"version": "1.1.0",
"description": "OHIF extension for Dicom PDF",
"author": "OHIF",
"license": "MIT",
@@ -29,7 +29,7 @@
},
"peerDependencies": {
"@ohif/core": "^0.50.0",
"dicom-parser": "^1.8.3",
"dicom-parser": "^1.8.9",
"prop-types": "^15.6.2",
"react": "^16.8.6",
"react-dom": "^16.8.6"
+27
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@@ -3,6 +3,33 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [0.7.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.0...@ohif/extension-dicom-rt@0.7.1) (2021-09-28)
**Note:** Version bump only for package @ohif/extension-dicom-rt
# [0.7.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.14...@ohif/extension-dicom-rt@0.7.0) (2021-09-23)
### Features
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
## [0.6.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.13...@ohif/extension-dicom-rt@0.6.14) (2021-09-03)
**Note:** Version bump only for package @ohif/extension-dicom-rt
## [0.6.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.12...@ohif/extension-dicom-rt@0.6.13) (2021-06-02)
+4 -4
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-dicom-rt",
"version": "0.6.13",
"version": "0.7.1",
"description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
"author": "OHIF",
"license": "MIT",
@@ -29,9 +29,9 @@
},
"peerDependencies": {
"@ohif/core": "^0.50.0",
"cornerstone-core": "^2.2.8",
"cornerstone-tools": "^4.20.1",
"dcmjs": "0.18.8",
"cornerstone-core": "^2.5.0",
"cornerstone-tools": "^6.0.0",
"dcmjs": "0.18.9",
"gl-matrix": "^3.3.0",
"prop-types": "^15.6.2",
"react": "^16.8.6",
+38 -1
View File
@@ -1,11 +1,12 @@
import React from 'react';
import { utils } from '@ohif/core';
import init from './init.js';
import sopClassHandlerModule from './OHIFDicomRTStructSopClassHandler';
import id from './id.js';
import RTPanel from './components/RTPanel/RTPanel';
import { version } from '../package.json';
import { utils } from '@ohif/core';
const { studyMetadataManager } = utils;
export default {
@@ -42,12 +43,48 @@ export default {
);
};
const RTPanelTabChangedEvent = 'rt-panel-tab-updated';
/**
* Trigger's an event to update the state of the panel's RoundedButtonGroup.
*
* This is required to avoid extension state
* coupling with the viewer's ToolbarRow component.
*
* @param {object} data
*/
const triggerRTPanelUpdatedEvent = data => {
const event = new CustomEvent(RTPanelTabChangedEvent, {
detail: data,
});
document.dispatchEvent(event);
};
const onRTStructsLoaded = ({ detail }) => {
const { rtStructDisplaySet, referencedDisplaySet } = detail;
const studyMetadata = studyMetadataManager.get(
rtStructDisplaySet.StudyInstanceUID
);
const referencedDisplaysets = studyMetadata.getDerivedDatasets({
referencedSeriesInstanceUID: referencedDisplaySet.SeriesInstanceUID,
Modality: 'RTSTRUCT',
});
triggerRTPanelUpdatedEvent({
badgeNumber: referencedDisplaysets.length,
target: 'rt-panel',
});
};
document.addEventListener('extensiondicomrtrtloaded', onRTStructsLoaded);
return {
menuOptions: [
{
icon: 'list',
label: 'RTSTRUCT',
target: 'rt-panel',
stateEvent: RTPanelTabChangedEvent,
isDisabled: (studies, activeViewport) => {
if (!studies) {
return true;
+15 -7
View File
@@ -90,11 +90,11 @@ export default async function loadRTStruct(
const sopInstanceUID = ContourImageSequence
? ContourImageSequence.ReferencedSOPInstanceUID
: _getClosestSOPInstanceUID(
ContourData,
ContourGeometricType,
NumberOfContourPoints,
imageIdSopInstanceUidPairs
);
ContourData,
ContourGeometricType,
NumberOfContourPoints,
imageIdSopInstanceUidPairs
);
const imageId = _getImageId(imageIdSopInstanceUidPairs, sopInstanceUID);
if (!imageId) {
@@ -171,7 +171,13 @@ export default async function loadRTStruct(
* allows us to easily watch the module or the rtstruct loading process in any other component
* without subscribing to external events.
*/
const event = new CustomEvent('extensiondicomrtrtloaded');
const event = new CustomEvent('extensiondicomrtrtloaded', {
detail: {
rtStructDisplaySet,
referencedDisplaySet,
studies,
},
});
document.dispatchEvent(event);
}
@@ -299,7 +305,9 @@ const _getImageId = (imageIdSopInstanceUidPairs, sopInstanceUID) => {
imageIdSopInstanceUidPairsEntry.sopInstanceUID === sopInstanceUID
);
return imageIdSopInstanceUidPairsEntry ? imageIdSopInstanceUidPairsEntry.imageId : null;
return imageIdSopInstanceUidPairsEntry
? imageIdSopInstanceUidPairsEntry.imageId
: null;
};
function _getImageIdSopInstanceUidPairsForDisplaySet(
@@ -3,6 +3,33 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [0.7.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.0...@ohif/extension-dicom-segmentation@0.7.1) (2021-09-28)
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
# [0.7.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.11...@ohif/extension-dicom-segmentation@0.7.0) (2021-09-23)
### Features
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
## [0.6.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.10...@ohif/extension-dicom-segmentation@0.6.11) (2021-09-03)
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
## [0.6.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.9...@ohif/extension-dicom-segmentation@0.6.10) (2021-06-02)
+4 -4
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-dicom-segmentation",
"version": "0.6.10",
"version": "0.7.1",
"description": "OHIF extension for viewing segmentations in the 2D MPR view",
"author": "OHIF",
"license": "MIT",
@@ -29,9 +29,9 @@
},
"peerDependencies": {
"@ohif/core": "^0.50.0",
"cornerstone-core": "^2.2.8",
"cornerstone-tools": "^4.20.1",
"dcmjs": "0.18.8",
"cornerstone-core": "^2.5.0",
"cornerstone-tools": "^6.0.0",
"dcmjs": "0.18.9",
"prop-types": "^15.6.2",
"react": "^16.8.6",
"react-dom": "^16.8.6"
@@ -224,16 +224,20 @@ const SegmentationPanel = ({
)
);
};
}, [activeIndex, viewports]);
}, [
activeIndex,
updateSegmentationComboBox,
viewports,
]);
const updateSegmentationComboBox = (e) => {
const updateSegmentationComboBox = e => {
const index = e.detail.activatedLabelmapIndex;
if (index !== -1) {
setState(state => ({ ...state, selectedSegmentation: index }));
} else {
cleanSegmentationComboBox();
}
}
};
const cleanSegmentationComboBox = () => {
setState(state => ({
@@ -245,7 +249,7 @@ const SegmentationPanel = ({
isDisabled: true,
selectedSegmentation: -1,
}));
}
};
const refreshSegmentations = () => {
const activeViewport = getActiveViewport();
@@ -309,7 +313,8 @@ const SegmentationPanel = ({
);
const filteredReferencedSegDisplaysets = referencedSegDisplaysets.filter(
(segDisplay => segDisplay.loadError !== true));
segDisplay => segDisplay.loadError !== true
);
return filteredReferencedSegDisplaysets.map((displaySet, index) => {
const {
@@ -1,9 +1,12 @@
import React from 'react';
import OHIF from '@ohif/core';
import init from './init.js';
import toolbarModule from './toolbarModule.js';
import getSopClassHandlerModule from './getOHIFDicomSegSopClassHandler.js';
import SegmentationPanel from './components/SegmentationPanel/SegmentationPanel.js';
import { version } from '../package.json';
const { studyMetadataManager } = OHIF.utils;
export default {
/**
@@ -79,12 +82,50 @@ export default {
);
};
const SegmentationPanelTabUpdatedEvent = 'segmentation-panel-tab-updated';
/**
* Trigger's an event to update the state of the panel's RoundedButtonGroup.
*
* This is required to avoid extension state
* coupling with the viewer's ToolbarRow component.
*
* @param {object} data
*/
const triggerSegmentationPanelTabUpdatedEvent = data => {
const event = new CustomEvent(SegmentationPanelTabUpdatedEvent, {
detail: data,
});
document.dispatchEvent(event);
};
const onSegmentationsLoaded = ({ detail }) => {
const { segDisplaySet, segMetadata } = detail;
const studyMetadata = studyMetadataManager.get(
segDisplaySet.StudyInstanceUID
);
const referencedDisplaysets = studyMetadata.getDerivedDatasets({
referencedSeriesInstanceUID: segMetadata.seriesInstanceUid,
Modality: 'SEG',
});
triggerSegmentationPanelTabUpdatedEvent({
badgeNumber: referencedDisplaysets.length,
target: 'segmentation-panel',
});
};
document.addEventListener(
'extensiondicomsegmentationsegloaded',
onSegmentationsLoaded
);
return {
menuOptions: [
{
icon: 'list',
label: 'Segmentations',
target: 'segmentation-panel',
stateEvent: SegmentationPanelTabUpdatedEvent,
isDisabled: studies => {
if (!studies) {
return true;
@@ -59,7 +59,16 @@ export default async function loadSegmentation(
* without subscribing to external events.
*/
console.log('Segmentation loaded.');
const event = new CustomEvent('extensiondicomsegmentationsegloaded');
const event = new CustomEvent('extensiondicomsegmentationsegloaded', {
detail: {
imageIds,
segDisplaySet,
labelmapBuffer,
segMetadata,
segmentsOnFrame,
labelmapSegments,
},
});
document.dispatchEvent(event);
return labelmapIndex;
@@ -3,6 +3,14 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [0.2.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.11...@ohif/extension-dicom-tag-browser@0.2.12) (2021-09-28)
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
## [0.2.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.10...@ohif/extension-dicom-tag-browser@0.2.11) (2021-06-03)
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
+2 -2
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-dicom-tag-browser",
"version": "0.2.11",
"version": "0.2.12",
"description": "OHIF extension for checking DICOM headers.",
"author": "OHIF",
"license": "MIT",
@@ -28,7 +28,7 @@
},
"peerDependencies": {
"@ohif/core": "^2.6.0",
"dcmjs": "0.18.8",
"dcmjs": "0.18.9",
"react": "^16.8.6"
},
"dependencies": {
+62
View File
@@ -3,6 +3,68 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [1.12.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.1...@ohif/extension-vtk@1.12.2) (2021-09-28)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.0...@ohif/extension-vtk@1.12.1) (2021-09-24)
**Note:** Version bump only for package @ohif/extension-vtk
# [1.12.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.18...@ohif/extension-vtk@1.12.0) (2021-09-23)
### Features
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
## [1.11.18](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.17...@ohif/extension-vtk@1.11.18) (2021-09-13)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.11.17](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.16...@ohif/extension-vtk@1.11.17) (2021-09-09)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.11.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.15...@ohif/extension-vtk@1.11.16) (2021-09-03)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.11.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.14...@ohif/extension-vtk@1.11.15) (2021-08-30)
### Bug Fixes
* MPR metadata parsing for spacings ([#2517](https://github.com/OHIF/Viewers/issues/2517)) ([715dfc5](https://github.com/OHIF/Viewers/commit/715dfc556a3883de31d74012dcc99e431d91f57d))
## [1.11.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.13...@ohif/extension-vtk@1.11.14) (2021-06-03)
**Note:** Version bump only for package @ohif/extension-vtk
+12 -12
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-vtk",
"version": "1.11.14",
"version": "1.12.2",
"description": "OHIF extension for VTK.js",
"author": "OHIF",
"license": "MIT",
@@ -32,11 +32,11 @@
"@ohif/core": "^0.50.0",
"@ohif/i18n": "^0.50.0",
"@ohif/ui": "^0.50.0",
"cornerstone-core": "^2.2.8",
"cornerstone-tools": "^4.20.1",
"cornerstone-wado-image-loader": "^3.1.0",
"dcmjs": "0.18.8",
"dicom-parser": "^1.8.3",
"cornerstone-core": "^2.5.0",
"cornerstone-tools": "^6.0.0",
"cornerstone-wado-image-loader": "^4.0.3",
"dcmjs": "0.18.9",
"dicom-parser": "^1.8.9",
"i18next": "^17.0.3",
"i18next-browser-languagedetector": "^3.0.1",
"prop-types": "^15.7.2",
@@ -50,14 +50,14 @@
"dependencies": {
"@babel/runtime": "^7.5.5",
"lodash.throttle": "^4.1.1",
"react-vtkjs-viewport": "^0.14.2"
"react-vtkjs-viewport": "^0.14.4"
},
"devDependencies": {
"@ohif/core": "^2.13.13",
"@ohif/ui": "^1.9.2",
"cornerstone-tools": "^4.20.1",
"cornerstone-wado-image-loader": "^3.1.0",
"dicom-parser": "^1.8.3",
"@ohif/core": "^2.15.1",
"@ohif/ui": "^1.10.2",
"cornerstone-tools": "^6.0.0",
"cornerstone-wado-image-loader": "^4.0.3",
"dicom-parser": "^1.8.9",
"gh-pages": "^2.0.1",
"i18next": "^17.0.3",
"i18next-browser-languagedetector": "^3.0.1",
+3 -3
View File
@@ -72,7 +72,7 @@ class OHIFVTKViewport extends Component {
};
static defaultProps = {
onScroll: () => {},
onScroll: () => { },
};
static id = 'OHIFVTKViewport';
@@ -271,7 +271,7 @@ class OHIFVTKViewport extends Component {
volumeMapper.setSampleDistance(sampleDistance);
// Be generous to surpress warnings, as the logging really hurts performance.
// Be generous to suppress warnings, as the logging really hurts performance.
// TODO: maybe we should auto adjust samples to 1000.
volumeMapper.setMaximumSamplesPerRay(4000);
@@ -398,7 +398,7 @@ class OHIFVTKViewport extends Component {
if (
displaySet.displaySetInstanceUID !==
prevDisplaySet.displaySetInstanceUID ||
prevDisplaySet.displaySetInstanceUID ||
displaySet.SOPInstanceUID !== prevDisplaySet.SOPInstanceUID ||
displaySet.frameIndex !== prevDisplaySet.frameIndex
) {
+57
View File
@@ -3,6 +3,63 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [2.15.1](https://github.com/OHIF/Viewers/compare/@ohif/core@2.15.0...@ohif/core@2.15.1) (2021-09-28)
**Note:** Version bump only for package @ohif/core
# [2.15.0](https://github.com/OHIF/Viewers/compare/@ohif/core@2.14.1...@ohif/core@2.15.0) (2021-09-23)
### Features
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
## [2.14.1](https://github.com/OHIF/Viewers/compare/@ohif/core@2.14.0...@ohif/core@2.14.1) (2021-09-13)
**Note:** Version bump only for package @ohif/core
# [2.14.0](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.15...@ohif/core@2.14.0) (2021-09-09)
### Features
* OHIF-1000: Study prefetcher ([#2466](https://github.com/OHIF/Viewers/issues/2466)) ([8f26045](https://github.com/OHIF/Viewers/commit/8f2604509d24092b721f1333289d838820d68cac))
## [2.13.15](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.14...@ohif/core@2.13.15) (2021-09-03)
**Note:** Version bump only for package @ohif/core
## [2.13.14](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.13...@ohif/core@2.13.14) (2021-08-30)
### Bug Fixes
* MPR metadata parsing for spacings ([#2517](https://github.com/OHIF/Viewers/issues/2517)) ([715dfc5](https://github.com/OHIF/Viewers/commit/715dfc556a3883de31d74012dcc99e431d91f57d))
## [2.13.13](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.12...@ohif/core@2.13.13) (2021-06-03)
**Note:** Version bump only for package @ohif/core
+6 -6
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/core",
"version": "2.13.13",
"version": "2.15.1",
"description": "Generic business logic for web-based medical imaging applications",
"author": "OHIF Core Team",
"license": "MIT",
@@ -31,15 +31,15 @@
"test:unit:ci": "jest --ci --runInBand --collectCoverage"
},
"peerDependencies": {
"cornerstone-core": "^2.2.8",
"cornerstone-tools": "^4.20.1",
"cornerstone-wado-image-loader": "^3.1.0",
"dicom-parser": "^1.8.3"
"cornerstone-core": "^2.5.0",
"cornerstone-tools": "^6.0.0",
"cornerstone-wado-image-loader": "^4.0.3",
"dicom-parser": "^1.8.9"
},
"dependencies": {
"@babel/runtime": "^7.5.5",
"ajv": "^6.10.0",
"dcmjs": "0.18.8",
"dcmjs": "0.18.9",
"dicomweb-client": "^0.8.1",
"immer": "6.0.2",
"isomorphic-base64": "^1.0.2",
@@ -1,7 +1,10 @@
import dcmjs from 'dcmjs';
import classes from '../classes';
import findInstanceMetadataBySopInstanceUID from './utils/findInstanceMetadataBySopInstanceUid';
const { LogManager } = classes;
/**
* Function to parse the part10 array buffer that comes from a DICOM Structured report into measurementData
* measurementData format is a viewer specific format to be stored into the redux and consumed by other components
@@ -20,9 +23,21 @@ const parseDicomStructuredReport = (part10SRArrayBuffer, displaySets) => {
);
const { MeasurementReport } = dcmjs.adapters.Cornerstone;
const storedMeasurementByToolType = MeasurementReport.generateToolState(
dataset
);
let storedMeasurementByToolType;
try {
storedMeasurementByToolType = MeasurementReport.generateToolState(dataset);
} catch (error) {
const seriesDescription = dataset.SeriesDescription || '';
LogManager.publish(LogManager.EVENTS.OnLog, {
title: `Failed to parse ${seriesDescription} measurement report`,
type: 'warning',
message: error.message || '',
notify: true,
});
return;
}
const measurementData = {};
let measurementNumber = 0;
+18
View File
@@ -0,0 +1,18 @@
import PubSub from './PubSub';
/** Log Events */
export const LogEvents = Object.freeze({
OnLog: 'onLog',
});
/**
* Log manager that implements pub/sub.
* This manager can be used to send logs across different packages
* using previously registered events.
*/
class LogManager extends PubSub {
EVENTS = LogEvents;
}
/** Singleton */
export default new LogManager();
@@ -231,26 +231,26 @@ class MetadataProvider {
let columnCosines;
if (PixelSpacing) {
rowPixelSpacing = PixelSpacing[0];
columnPixelSpacing = PixelSpacing[1];
rowPixelSpacing = validNumber(PixelSpacing[0]);
columnPixelSpacing = validNumber(PixelSpacing[1]);
}
if (ImageOrientationPatient) {
rowCosines = ImageOrientationPatient.slice(0, 3);
columnCosines = ImageOrientationPatient.slice(3, 6);
rowCosines = validNumber(ImageOrientationPatient.slice(0, 3));
columnCosines = validNumber(ImageOrientationPatient.slice(3, 6));
}
metadata = {
frameOfReferenceUID: instance.FrameOfReferenceUID,
rows: instance.Rows,
columns: instance.Columns,
imageOrientationPatient: ImageOrientationPatient,
imageOrientationPatient: validNumber(ImageOrientationPatient),
rowCosines,
columnCosines,
imagePositionPatient: instance.ImagePositionPatient,
sliceThickness: instance.SliceThickness,
sliceLocation: instance.SliceLocation,
pixelSpacing: PixelSpacing,
imagePositionPatient: validNumber(instance.ImagePositionPatient),
sliceThickness: validNumber(instance.SliceThickness),
sliceLocation: validNumber(instance.SliceLocation),
pixelSpacing: validNumber(PixelSpacing),
rowPixelSpacing,
columnPixelSpacing,
};
+75
View File
@@ -0,0 +1,75 @@
const _subscriptions = Symbol('subscriptions');
const _lastSubscriptionId = Symbol('lastSubscriptionId');
/**
* Class to implement publish/subscribe pattern
*
* @class
* @classdesc Pub/sub mechanism
*/
export default class PubSub {
constructor() {
this[_subscriptions] = {};
this[_lastSubscriptionId] = 0;
}
/**
* Subscribe to event
*
* @param {string} eventName Event name
* @param {Function} callback Callback function
* @returns {void}
*/
subscribe(eventName, callback) {
if (eventName === undefined) {
throw new Error('Event name is required');
}
if (typeof callback !== 'function') {
throw new Error('Callback must be a function');
}
if (!this[_subscriptions].hasOwnProperty(eventName)) {
this[_subscriptions][eventName] = {};
}
const subscriptionId = `sub${this[_lastSubscriptionId]++}`;
this[_subscriptions][eventName][subscriptionId] = callback;
}
/**
* Removes a subscription
*
* @param {string} eventName Event name
* @param {Function} [callback] Callback function
* @returns {void}
*/
unsubscribe(eventName, callback) {
const callbacks = this[_subscriptions][eventName] || {};
for (let subscriptionId in callbacks) {
if (!callback) {
delete callbacks[subscriptionId];
} else if (callbacks[subscriptionId] === callback) {
delete callbacks[subscriptionId];
}
}
}
/**
* Publish event to all subscriptions
*
* @param {String} eventName Event name
* @param {any} [payload] Data that will be published
* @returns {void}
*/
publish(eventName, ...payload) {
if (eventName === undefined) {
throw new Error('Event name is required');
}
const callbacks = this[_subscriptions][eventName] || {};
for (let subscriptionId in callbacks) {
callbacks[subscriptionId](...payload);
}
}
}
+118 -31
View File
@@ -1,16 +1,14 @@
import cornerstone from 'cornerstone-core';
import cornerstoneWADOImageLoader from 'cornerstone-wado-image-loader';
import {
clearStudyLoadingProgress,
setStudyLoadingProgress,
} from '../redux/actions';
import debounce from 'lodash.debounce';
import StackManager from '../utils/StackManager';
import { StudyPrefetcher } from './StudyPrefetcher';
class BaseLoadingListener {
constructor(stack, options = {}) {
this.id = BaseLoadingListener.getNewId();
this.stack = stack;
this.startListening();
this.statsItemsLimit = options.statsItemsLimit || 2;
this.stats = {
items: [],
@@ -60,6 +58,9 @@ class BaseLoadingListener {
}
_getProgressId() {
/**
* TODO: The id key should be configurable.
*/
const displaySetInstanceUID = this.stack.displaySetInstanceUID;
return 'StackProgress:' + displaySetInstanceUID;
}
@@ -96,11 +97,18 @@ class BaseLoadingListener {
class DICOMFileLoadingListener extends BaseLoadingListener {
constructor(stack, options) {
super(stack, options);
this.imageLoadProgressEventHandler = this._imageLoadProgressEventHandle.bind(
this
);
this._dataSetUrl = this._getDataSetUrl(stack);
this._lastLoaded = 0;
// Check how many instances has already been download (cached)
this._checkCachedData();
this.startListening();
}
_checkCachedData() {
@@ -127,10 +135,6 @@ class DICOMFileLoadingListener extends BaseLoadingListener {
startListening() {
const imageLoadProgressEventName = this._getImageLoadProgressEventName();
this.imageLoadProgressEventHandler = this._imageLoadProgressEventHandle.bind(
this
);
this.stopListening();
cornerstone.events.addEventListener(
@@ -200,17 +204,57 @@ class DICOMFileLoadingListener extends BaseLoadingListener {
}
}
const StudyLoadingListenerEvents = {
OnProgress: 'StudyLoadingListenerEvents.OnProgress',
};
function promiseState(promise, callback) {
// Symbols and RegExps are never content-equal
var uniqueValue = window['Symbol'] ? Symbol('unique') : /unique/;
function notifyPendingOrResolved(value) {
if (value === uniqueValue) {
return callback('pending');
} else {
return callback('fulfilled');
}
}
function notifyRejected(reason) {
return callback('rejected');
}
var race = [promise, Promise.resolve(uniqueValue)];
Promise.race(race).then(notifyPendingOrResolved, notifyRejected);
}
class StackLoadingListener extends BaseLoadingListener {
constructor(stack, options = {}) {
options.statsItemsLimit = 20;
super(stack, options);
this.imageLoadedEventHandler = this._imageLoadedEventHandler.bind(this);
this.imageCachePromiseRemovedEventHandler = this._imageCachePromiseRemovedEventHandler.bind(
this
);
this.imageDataMap = this._convertImageIdsArrayToMap(stack.imageIds);
this.framesStatus = this._createArray(stack.imageIds.length, false);
this.loadedCount = 0;
// Check how many instances has already been download (cached)
this._checkCachedData();
this._debouncedSetProgressData = debounce((...args) => {
this._setProgressData(...args);
/** After checking cache, continue prefetch */
const studyPrefetcher = StudyPrefetcher.getInstance();
studyPrefetcher.prefetch(studyPrefetcher.getElement());
}, 300);
const debounced = true;
this._checkCachedData(debounced);
this.startListening();
}
_convertImageIdsArrayToMap(imageIds) {
@@ -238,18 +282,37 @@ class StackLoadingListener extends BaseLoadingListener {
return array;
}
_checkCachedData() {
// const imageIds = this.stack.imageIds;
// TODO: No way to check status of Promise.
/*for(let i = 0; i < imageIds.length; i++) {
const imageId = imageIds[i];
/**
* Check if image id is cached in cornerstone.
*
* @param {string} imageId
* @returns
*/
isImageCached(imageId) {
const image = cornerstone.imageCache.imageCache[imageId];
return image && image.sizeInBytes;
}
const imagePromise = cornerstone.imageCache.getImageLoadObject(imageId).promise;
_checkCachedData(debounced = false) {
const imageIds = this.stack.imageIds;
if (imagePromise && (imagePromise.state() === 'resolved')) {
this._updateFrameStatus(imageId, true);
}
}*/
for (let i = 0; i < imageIds.length; i++) {
const imageId = imageIds[i];
const imageObject = cornerstone.imageCache.getImageLoadObject(imageId);
if (this.isImageCached(imageId)) {
this._updateFrameStatus(imageId, true, debounced);
}
if (imageObject && imageObject.promise) {
promiseState(imageObject.promise, state => {
if (state === 'fulfilled') {
this._updateFrameStatus(imageId, true, debounced);
}
});
}
}
}
_getImageLoadedEventName() {
@@ -272,11 +335,6 @@ class StackLoadingListener extends BaseLoadingListener {
const imageLoadedEventName = this._getImageLoadedEventName();
const imageCachePromiseRemovedEventName = this._getImageCachePromiseRemoveEventName();
this.imageLoadedEventHandler = this._imageLoadedEventHandler.bind(this);
this.imageCachePromiseRemovedEventHandler = this._imageCachePromiseRemovedEventHandler.bind(
this
);
this.stopListening();
cornerstone.events.addEventListener(
@@ -303,7 +361,7 @@ class StackLoadingListener extends BaseLoadingListener {
);
}
_updateFrameStatus(imageId, loaded) {
_updateFrameStatus(imageId, loaded, debounced) {
const imageData = this.imageDataMap.get(imageId);
if (!imageData || imageData.loaded === loaded) {
@@ -318,7 +376,7 @@ class StackLoadingListener extends BaseLoadingListener {
imageData.loaded = loaded;
this.framesStatus[imageData.index] = loaded;
this.loadedCount += loaded ? 1 : -1;
this._updateProgress();
this._updateProgress(debounced);
}
_setProgressData(progressId, progressData) {
@@ -339,7 +397,7 @@ class StackLoadingListener extends BaseLoadingListener {
);
}
_updateProgress() {
_updateProgress(debounced) {
const totalFramesCount = this.stack.imageIds.length;
const loadedFramesCount = this.loadedCount;
const loadingFramesCount = totalFramesCount - loadedFramesCount;
@@ -357,6 +415,11 @@ class StackLoadingListener extends BaseLoadingListener {
framesStatus: this.framesStatus,
};
if (debounced) {
this._debouncedSetProgressData(progressId, progressData);
return;
}
this._setProgressData(progressId, progressData);
}
@@ -371,11 +434,13 @@ class StackLoadingListener extends BaseLoadingListener {
}
progressBar += ']';
log.info(`${displaySetInstanceUID}: ${progressBar}`);
console.info(`${displaySetInstanceUID}: ${progressBar}`);
}
}
class StudyLoadingListener {
static events = StudyLoadingListenerEvents;
constructor(options) {
this.listeners = {};
this.options = options;
@@ -454,14 +519,36 @@ class StudyLoadingListener {
_getSchema(stack) {
const imageId = stack.imageIds[0];
if (!imageId) {
return;
}
const colonIndex = imageId.indexOf(':');
return imageId.substring(0, colonIndex);
}
// Singleton
static getInstance(options) {
/**
* TODO: Use a different alternative without the use of events.
*/
const DEFAULT_OPTIONS = {
_setProgressData: (progressId, progressData) => {
const event = new CustomEvent(StudyLoadingListenerEvents.OnProgress, {
detail: { progressId, progressData },
});
document.dispatchEvent(event);
},
_clearProgressById: progressId => {
const event = new CustomEvent(StudyLoadingListenerEvents.OnProgress, {
detail: { progressId, percentComplete: 0 },
});
document.dispatchEvent(event);
},
};
if (!StudyLoadingListener._instance) {
StudyLoadingListener._instance = new StudyLoadingListener(options);
StudyLoadingListener._instance = new StudyLoadingListener(
options || DEFAULT_OPTIONS
);
}
return StudyLoadingListener._instance;
+322 -55
View File
@@ -1,14 +1,28 @@
import log from '../log.js';
import OHIFError from './OHIFError';
import cornerstone from 'cornerstone-core';
import cornerstoneTools from 'cornerstone-tools';
import getImageId from '../utils/getImageId.js';
const noop = () => {};
export class StudyPrefetcher {
constructor(studies) {
options = {
order: 'closest',
displaySetCount: 1,
onImageCached: noop,
requestType: 'prefetch',
preventCache: false,
prefetchDisplaySetsTimeout: 300,
includeActiveDisplaySet: false,
};
constructor(studies, options) {
this.studies = studies || [];
this.prefetchDisplaySetsTimeout = 300;
this.lastActiveViewportElement = null;
if (options) {
this.options = { ...this.options, ...options };
this.options.requestType = 'prefetch';
}
cornerstone.events.addEventListener(
'cornerstoneimagecachefull.StudyPrefetcher',
@@ -16,6 +30,9 @@ export class StudyPrefetcher {
);
}
/**
* Remove previously set event listeners and stop prefetching.
*/
destroy() {
this.stopPrefetching();
cornerstone.events.removeEventListener(
@@ -24,95 +41,167 @@ export class StudyPrefetcher {
);
}
static getInstance() {
/**
* Get StudyPrefetcher singleton instance.
*
* @param {array} studies
* @param {object} options
* @returns
*/
static getInstance(studies = [], options) {
if (!StudyPrefetcher.instance) {
StudyPrefetcher.instance = new StudyPrefetcher([]);
StudyPrefetcher.instance = new StudyPrefetcher(studies, options);
}
if (options) {
this.options = { ...this.options, ...options };
this.options.requestType = 'prefetch';
}
return StudyPrefetcher.instance;
}
/**
* OHIF study metadata instances.
*
* @param {array} studies
*/
setStudies(studies) {
this.stopPrefetching();
this.studies = studies;
}
prefetch() {
/**
* Get previously prefetched element.
*
* @returns {HTMLElement} Previously prefetched element.
*/
getElement() {
return this.element;
}
/**
* Prefetch related display sets based on cornerstone viewport element
* with previously set options.
*
* @param {*} element
* @param {string} displaySetInstanceUID the display set instance uid
* @returns
*/
prefetch(element, displaySetInstanceUID) {
if (!this.studies || !this.studies.length) {
return;
}
this.element = element;
this.enabledElement = cornerstone.getEnabledElement(element);
this.stopPrefetching();
this.prefetchDisplaySets();
this.prefetchDisplaySets(displaySetInstanceUID);
}
/**
* Stop prefetching images.
*/
stopPrefetching() {
cornerstoneTools.requestPoolManager.clearRequestStack('prefetch');
cornerstone.imageLoadPoolManager.clearRequestStack('prefetch');
}
prefetchDisplaySetsAsync(timeout) {
timeout = timeout || this.prefetchDisplaySetsTimeout;
/**
* Prefetch display sets async.
*
* @param {HTMLElement} element cornerstone viewport element
* @param {number} timeout
*/
prefetchDisplaySetsAsync(element, timeout) {
this.enabledElement = cornerstone.getEnabledElement(element);
timeout = timeout || this.options.prefetchDisplaySetsTimeout;
clearTimeout(this.prefetchDisplaySetsHandler);
this.prefetchDisplaySetsHandler = setTimeout(() => {
this.prefetchDisplaySets();
this.prefetchDisplaySets(element);
}, timeout);
}
prefetchDisplaySets() {
// TODO: Allow passing in config
let config = {
order: 'closest',
displaySetCount: 1,
};
const displaySetsToPrefetch = this.getDisplaySetsToPrefetch(config);
/**
* Extract all image ids from all display sets to be fetched and
* call method to add images to request pool manager.
*
* @param {string} displaySetInstanceUID the display set instance uid
*/
prefetchDisplaySets(displaySetInstanceUID) {
const displaySetsToPrefetch = this.getDisplaySetsToPrefetch(
displaySetInstanceUID
);
const imageIds = this.getImageIdsFromDisplaySets(displaySetsToPrefetch);
this.prefetchImageIds(imageIds);
}
/**
* Add image ids to request pool manager.
*
* @param {array} imageIds
*/
prefetchImageIds(imageIds) {
const nonCachedImageIds = this.filterCachedImageIds(imageIds);
const requestPoolManager = cornerstoneTools.requestPoolManager;
const requestType = 'prefetch';
const preventCache = false;
const noop = () => {};
const imageLoadPoolManager = cornerstone.imageLoadPoolManager;
let requestFn;
if (this.options.preventCache) {
requestFn = id => cornerstone.loadImage(id);
} else {
requestFn = id => cornerstone.loadAndCacheImage(id);
}
nonCachedImageIds.forEach(imageId => {
requestPoolManager.addRequest(
{},
imageId,
requestType,
preventCache,
noop,
noop
imageLoadPoolManager.addRequest(
requestFn.bind(this, imageId),
this.options.requestType,
{
imageId,
}
);
});
requestPoolManager.startGrabbing();
}
/**
* Get study by cornerstone image instance.
*
* @param {object} image
* @returns
*/
getStudy(image) {
const StudyInstanceUID = cornerstone.metaData.get(
'StudyInstanceUID',
image.imageId
);
return OHIF.viewer.Studies.find(
study => study.StudyInstanceUID === StudyInstanceUID
const studies = this.studies;
return studies.find(
study => study.getData().StudyInstanceUID === StudyInstanceUID
);
}
/**
* Get study series by cornerstone image instance.
*
* @param {object} study OHIF study instance
* @param {object} image cornerstone image instance object
* @returns
*/
getSeries(study, image) {
const SeriesInstanceUID = cornerstone.metaData.get(
'SeriesInstanceUID',
image.imageId
);
const studyMetadata = OHIF.viewerbase.getStudyMetadata(study);
return studyMetadata.getSeriesByUID(SeriesInstanceUID);
return study.getSeriesByUID(SeriesInstanceUID);
}
/**
* Get sop instance by cornerstone image instance.
*
* @param {array} series
* @param {object} image
* @returns
*/
getInstance(series, image) {
const instanceMetadata = cornerstone.metaData.get(
'instance',
@@ -121,7 +210,33 @@ export class StudyPrefetcher {
return series.getInstanceByUID(instanceMetadata.SOPInstanceUID);
}
getActiveDisplaySet(displaySets, instance) {
/**
* Returns the display set with given uid.
*
* @param {string} displaySetInstanceUID the display set instance uid
* @returns {object} displaySet
*/
getDisplaySetByUID(displaySetInstanceUID) {
let displaySet;
this.studies.forEach(study => {
const ds = study.displaySets.find(
ds => ds.displaySetInstanceUID === displaySetInstanceUID
);
if (ds) {
displaySet = ds;
}
});
return displaySet;
}
/**
* Get display set by SOPInstanceUID.
*
* @param {array} displaySets
* @param {object} instance
* @returns
*/
getDisplaySetBySOPInstanceUID(displaySets, instance) {
return displaySets.find(displaySet => {
return displaySet.images.some(displaySetImage => {
return displaySetImage.SOPInstanceUID === instance.SOPInstanceUID;
@@ -129,25 +244,48 @@ export class StudyPrefetcher {
});
}
getDisplaySetsToPrefetch(config) {
/**
* Get active viewport image based on cornerstone viewport element.
* @returns
*/
getActiveViewportImage() {
if (!this.enabledElement) {
return;
}
return this.enabledElement.image;
}
/**
* Prefetch display sets based on cornerstone viewport element image.
*
* @param {string} displaySetInstanceUID the display set instance uid
* @returns {array} displaySets
*/
getDisplaySetsToPrefetch(displaySetInstanceUID) {
const image = this.getActiveViewportImage();
if (!image || !config || !config.displaySetCount) {
if (!image) {
return [];
}
/*const study = this.getStudy(image);
const study = this.getStudy(image);
const series = this.getSeries(study, image);
const instance = this.getInstance(series, image);*/
const instance = this.getInstance(series, image);
const displaySets = study.displaySets;
const activeDisplaySet = null; //this.getActiveDisplaySet(displaySets, instance);
const activeDisplaySet = displaySetInstanceUID
? this.getDisplaySetByUID(displaySetInstanceUID)
: this.getDisplaySetBySOPInstanceUID(displaySets, instance);
const prefetchMethodMap = {
topdown: 'getFirstDisplaySets',
downward: 'getNextDisplaySets',
upward: 'getPreviousDisplaySets',
closest: 'getClosestDisplaySets',
all: 'getAllDisplaySets',
};
const prefetchOrder = config.order;
const prefetchOrder = this.options.order;
const methodName = prefetchMethodMap[prefetchOrder];
const getDisplaySets = this[methodName];
@@ -163,18 +301,59 @@ export class StudyPrefetcher {
this,
displaySets,
activeDisplaySet,
config.displaySetCount
this.options.displaySetCount,
this.options.includeActiveDisplaySet
);
}
getFirstDisplaySets(displaySets, activeDisplaySet, displaySetCount) {
/**
* Get all display sets.
*
* @param {array} displaySets
* @param {object} activeDisplaySet
* @param {number} displaySetCount
* @param {boolean} includeActiveDisplaySet
* @returns
*/
getAllDisplaySets(
displaySets,
activeDisplaySet,
displaySetCount,
includeActiveDisplaySet
) {
const length = displaySets.length;
const selectedDisplaySets = [];
for (let i = 0; i < length; i++) {
const displaySet = displaySets[i];
selectedDisplaySets.push(displaySet);
}
return selectedDisplaySets;
}
/**
* Get all display sets in order after the active display set.
*
* @param {array} displaySets
* @param {object} activeDisplaySet
* @param {number} displaySetCount
* @param {boolean} includeActiveDisplaySet
* @returns
*/
getFirstDisplaySets(
displaySets,
activeDisplaySet,
displaySetCount,
includeActiveDisplaySet
) {
const length = displaySets.length;
const selectedDisplaySets = [];
for (let i = 0; i < length && displaySetCount; i++) {
const displaySet = displaySets[i];
if (displaySet !== activeDisplaySet) {
if (includeActiveDisplaySet || displaySet !== activeDisplaySet) {
selectedDisplaySets.push(displaySet);
displaySetCount--;
}
@@ -183,21 +362,78 @@ export class StudyPrefetcher {
return selectedDisplaySets;
}
getNextDisplaySets(displaySets, activeDisplaySet, displaySetCount) {
/**
* Get all display sets before the active display set.
*
* @param {array} displaySets
* @param {object} activeDisplaySet
* @param {number} displaySetCount
* @param {boolean} includeActiveDisplaySet
* @returns
*/
getPreviousDisplaySets(
displaySets,
activeDisplaySet,
displaySetCount,
includeActiveDisplaySet
) {
const activeDisplaySetIndex = displaySets.indexOf(activeDisplaySet);
const begin = activeDisplaySetIndex + 1;
const end = Math.min(begin + displaySetCount, displaySets.length);
const end = includeActiveDisplaySet
? activeDisplaySetIndex + 1
: activeDisplaySetIndex;
const previousDisplaySets = displaySets.slice(0, end);
return previousDisplaySets.reverse().slice(0, displaySetCount);
}
/**
* Get all display sets after the active display set.
*
* @param {array} displaySets
* @param {object} activeDisplaySet
* @param {number} displaySetCount
* @param {boolean} includeActiveDisplaySet
* @returns
*/
getNextDisplaySets(
displaySets,
activeDisplaySet,
displaySetCount,
includeActiveDisplaySet
) {
const activeDisplaySetIndex = displaySets.indexOf(activeDisplaySet);
const begin = includeActiveDisplaySet
? activeDisplaySetIndex
: activeDisplaySetIndex + 1;
const end = Math.min(begin + displaySetCount, displaySets.length);
return displaySets.slice(begin, end);
}
getClosestDisplaySets(displaySets, activeDisplaySet, displaySetCount) {
/**
* Get all display set closest to the active display set.
*
* @param {array} displaySets
* @param {object} activeDisplaySet
* @param {number} displaySetCount
* @param {boolean} includeActiveDisplaySet
* @returns
*/
getClosestDisplaySets(
displaySets,
activeDisplaySet,
displaySetCount,
includeActiveDisplaySet
) {
const activeDisplaySetIndex = displaySets.indexOf(activeDisplaySet);
const length = displaySets.length;
const selectedDisplaySets = [];
let left = activeDisplaySetIndex - 1;
let right = activeDisplaySetIndex + 1;
if (includeActiveDisplaySet) {
selectedDisplaySets.push(displaySets[activeDisplaySetIndex]);
displaySetCount--;
}
while ((left >= 0 || right < length) && displaySetCount) {
if (left >= 0) {
selectedDisplaySets.push(displaySets[left]);
@@ -215,6 +451,12 @@ export class StudyPrefetcher {
return selectedDisplaySets;
}
/**
* Get all image ids from display sets.
*
* @param {array} displaySets
* @returns {array} image ids
*/
getImageIdsFromDisplaySets(displaySets) {
let imageIds = [];
@@ -225,9 +467,19 @@ export class StudyPrefetcher {
return imageIds;
}
/**
* Get all image ids from a given display set.
*
* @param {array} displaySet
* @returns
*/
getImageIdsFromDisplaySet(displaySet) {
const imageIds = [];
if (!displaySet.images || displaySet.images.length < 1) {
return [];
}
// TODO: This duplicates work done by the stack manager
displaySet.images.forEach(image => {
const numFrames = image.numFrames;
@@ -245,15 +497,30 @@ export class StudyPrefetcher {
return imageIds;
}
/**
* Filter cached image ids from a set of image ids.
*
* @param {array} imageIds
* @returns {array} images not cached
*/
filterCachedImageIds(imageIds) {
return imageIds.filter(imageId => !this.isImageCached(imageId));
}
/**
* Check if image id is cached in cornerstone.
*
* @param {string} imageId
* @returns
*/
isImageCached(imageId) {
const image = cornerstone.imageCache.imageCache[imageId];
return image && image.sizeInBytes;
}
/**
* Warns that cache is full and stops prefetching.
*/
cacheFullHandler = () => {
log.warn('Cache full');
this.stopPrefetching();
+4
View File
@@ -4,6 +4,8 @@ import CommandsManager from './CommandsManager.js';
import { DICOMFileLoadingListener } from './StudyLoadingListener';
import HotkeysManager from './HotkeysManager.js';
import ImageSet from './ImageSet';
import LogManager from './LogManager';
import PubSub from './PubSub';
import MetadataProvider from './MetadataProvider';
import OHIFError from './OHIFError.js';
import { OHIFStudyMetadataSource } from './OHIFStudyMetadataSource';
@@ -36,7 +38,9 @@ const classes = {
MetadataProvider,
CommandsManager,
HotkeysManager,
LogManager,
ImageSet,
PubSub,
StudyPrefetcher,
StudyLoadingListener,
StackLoadingListener,
@@ -497,6 +497,12 @@ class StudyMetadata extends Metadata {
}
}
if (this._displaySets.some(ds =>
ds.displaySetInstanceUID === displaySet.displaySetInstanceUID)
) {
return;
}
this._displaySets.splice(insertIndex, 0, displaySet);
this.displaySets = this._displaySets;
}
-13
View File
@@ -78,17 +78,6 @@ export const setActiveViewportSpecificData = viewportSpecificData => ({
/**
* NOT-VIEWPORT
*/
export const setStudyLoadingProgress = (progressId, progressData) => ({
type: 'SET_STUDY_LOADING_PROGRESS',
progressId,
progressData,
});
export const clearStudyLoadingProgress = progressId => ({
type: 'CLEAR_STUDY_LOADING_PROGRESS',
progressId,
});
export const setUserPreferences = state => ({
type: SET_USER_PREFERENCES,
state,
@@ -134,8 +123,6 @@ const actions = {
/**
* NOT-VIEWPORT
*/
setStudyLoadingProgress,
clearStudyLoadingProgress,
setUserPreferences,
setExtensionData,
setTimepoints,
-2
View File
@@ -11,8 +11,6 @@ describe('actions', () => {
'setLayout',
'clearViewportSpecificData',
'setActiveViewportSpecificData',
'setStudyLoadingProgress',
'clearStudyLoadingProgress',
'setUserPreferences',
'setExtensionData',
'setTimepoints',
@@ -1,5 +1,4 @@
import extensions from './extensions';
import loading from './loading';
import preferences from './preferences';
import servers from './servers';
import studies from './studies';
@@ -8,7 +7,6 @@ import viewports from './viewports';
const reducers = {
extensions,
loading,
preferences,
servers,
studies,
@@ -1,33 +0,0 @@
import cloneDeep from 'lodash.clonedeep';
const defaultState = {
progress: {},
lastUpdated: null,
};
const loading = (state = defaultState, action) => {
let progress;
let lastUpdated;
switch (action.type) {
case 'SET_STUDY_LOADING_PROGRESS':
progress = cloneDeep(state).progress;
progress[action.progressId] = action.progressData;
// This is a workaround so we can easily identify changes
// to the progress object without doing deep comparison.
lastUpdated = new Date().getTime();
return Object.assign({}, state, { progress, lastUpdated });
case 'CLEAR_STUDY_LOADING_PROGRESS':
progress = cloneDeep(state).progress;
delete progress[action.progressId];
lastUpdated = new Date().getTime();
return Object.assign({}, state, { progress, lastUpdated });
default:
return state;
}
};
export default loading;
@@ -260,7 +260,6 @@ class MeasurementService {
const sourceInfo = this._getSourceInfo(source);
if (!definition) {
console.log('TEST');
log.warn('No source definition provided. Exiting early.');
return;
}
+38
View File
@@ -3,6 +3,44 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [1.10.2](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.1...@ohif/ui@1.10.2) (2021-09-24)
### Bug Fixes
* throttle thumbnail progress updates ([#2557](https://github.com/OHIF/Viewers/issues/2557)) ([66c587b](https://github.com/OHIF/Viewers/commit/66c587b139835201331a64bc24a17901e7583649))
## [1.10.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.0...@ohif/ui@1.10.1) (2021-09-13)
**Note:** Version bump only for package @ohif/ui
# [1.10.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.9.3...@ohif/ui@1.10.0) (2021-09-09)
### Features
* OHIF-1000: Study prefetcher ([#2466](https://github.com/OHIF/Viewers/issues/2466)) ([8f26045](https://github.com/OHIF/Viewers/commit/8f2604509d24092b721f1333289d838820d68cac))
## [1.9.3](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.9.2...@ohif/ui@1.9.3) (2021-09-03)
**Note:** Version bump only for package @ohif/ui
## [1.9.2](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.9.1...@ohif/ui@1.9.2) (2021-05-17)
**Note:** Version bump only for package @ohif/ui
+1 -1
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/ui",
"version": "1.9.2",
"version": "1.10.2",
"description": "A set of React components for Medical Imaging Viewers",
"author": "OHIF Contributors",
"license": "MIT",
@@ -4,6 +4,29 @@
z-index: 0;
}
.RoundedButtonGroup .badgeNumber-container {
background-color: var(--ui-border-color-dark);
width: 21px;
height: 21px;
justify-content: center;
align-items: center;
display: flex;
border-radius: 50%;
font-size: 12px;
font-weight: bold;
bottom: 10px;
left: 5px;
color: white;
position: absolute;
}
.RoundedButtonGroup .badgeNumber {
font-size: 10px;
font-weight: bold;
display: block;
width: 25px;
}
.roundedButtonWrapper {
cursor: pointer;
display: inline-block;
@@ -36,7 +59,12 @@
z-index: 1;
}
.roundedButtonWrapper .roundedButton svg .roundedButtonWrapper .roundedButton span {
.roundedButtonWrapper
.roundedButton
svg
.roundedButtonWrapper
.roundedButton
span {
margin: 0 2px;
}
@@ -13,6 +13,7 @@ class RoundedButtonGroup extends Component {
PropTypes.shape({
value: PropTypes.any,
label: PropTypes.string,
stateEvent: PropTypes.string,
icon: PropTypes.oneOfType([
PropTypes.string,
PropTypes.shape({
@@ -30,6 +31,15 @@ class RoundedButtonGroup extends Component {
value: null,
};
state = {
badgeNumbers: [],
};
constructor() {
super();
this.onStateEvent = this.onStateEvent.bind(this);
}
onClickOption = value => {
let newValue = value;
if (this.props.value === value) {
@@ -41,6 +51,48 @@ class RoundedButtonGroup extends Component {
}
};
onStateEvent(event) {
const optionIndex = this.props.options.findIndex(
o => o.value === event.detail.target
);
if (optionIndex > -1) {
const badgeNumbers = this.state.badgeNumbers;
badgeNumbers[optionIndex] = event.detail.badgeNumber;
this.setState({ badgeNumbers });
}
}
componentDidMount() {
this.props.options.forEach(option => {
if (option.stateEvent) {
document.addEventListener(option.stateEvent, this.onStateEvent);
}
});
}
componentDidUpdate(prevProps, prevState) {
this.props.options.forEach((option, index) => {
if (
option.stateEvent &&
option.stateEvent !==
(prevProps.options[index]
? prevProps.options[index].stateEvent
: null)
) {
document.removeEventListener(option.stateEvent, this.onStateEvent);
document.addEventListener(option.stateEvent, this.onStateEvent);
}
});
}
componentWillUnmount() {
this.props.options.forEach(option => {
if (option.stateEvent) {
document.removeEventListener(option.stateEvent, this.onStateEvent);
}
});
}
render() {
let className = classnames(
RoundedButtonGroup.className,
@@ -62,6 +114,14 @@ class RoundedButtonGroup extends Component {
<div className="bottomLabel">{option.bottomLabel}</div>
);
let badgeNumber = this.state.badgeNumbers[index];
const badgeNumberOverflow = String(badgeNumber).length > 2;
badgeNumber = badgeNumber
? badgeNumberOverflow
? 99
: badgeNumber
: null;
return (
<div
key={index}
@@ -70,6 +130,14 @@ class RoundedButtonGroup extends Component {
>
<div className="roundedButton">
{optionText}
{badgeNumber && (
<div className="badgeNumber-container">
<span className="badgeNumber">
{badgeNumber}
{badgeNumberOverflow && '+'}
</span>
</div>
)}
{iconProps && <Icon {...iconProps} />}
</div>
{bottomLabel}
@@ -2,7 +2,7 @@
import './ImageThumbnail.styl';
import { utils } from '@ohif/core';
import React, { useState, useEffect, createRef } from 'react';
import React, { useState, useEffect, createRef, useCallback } from 'react';
import classNames from 'classnames';
import PropTypes from 'prop-types';
@@ -23,6 +23,7 @@ function ImageThumbnail(props) {
imageId,
stackPercentComplete,
error: propsError,
showProgressBar,
} = props;
const [isLoading, setLoading] = useState(false);
@@ -39,7 +40,8 @@ function ImageThumbnail(props) {
loadingOrError = <ViewportLoadingIndicator />;
}
const showStackLoadingProgressBar = stackPercentComplete !== undefined;
const showStackLoadingProgressBar =
showProgressBar && stackPercentComplete !== undefined;
const shouldRenderToCanvas = () => {
return imageId && !imageSrc;
@@ -71,11 +73,11 @@ function ImageThumbnail(props) {
}
};
const purgeCancelablePromise = () => {
const purgeCancelablePromise = useCallback(() => {
if (cancelablePromise) {
cancelablePromise.cancel();
}
};
});
useEffect(() => {
return () => {
@@ -96,7 +98,13 @@ function ImageThumbnail(props) {
setImagePromise();
fetchImagePromise();
}
}, [fetchImagePromise, image.imageId, imageId, purgeCancelablePromise, setImagePromise]);
}, [
fetchImagePromise,
image.imageId,
imageId,
purgeCancelablePromise,
setImagePromise,
]);
return (
<div className={classNames('ImageThumbnail', { active: active })}>
@@ -104,14 +112,14 @@ function ImageThumbnail(props) {
{shouldRenderToCanvas() ? (
<canvas ref={canvasRef} width={width} height={height} />
) : (
<img
className="static-image"
src={imageSrc}
//width={this.props.width}
height={height}
alt={''}
/>
)}
<img
className="static-image"
src={imageSrc}
//width={this.props.width}
height={height}
alt={''}
/>
)}
</div>
{loadingOrError}
{showStackLoadingProgressBar && (
@@ -135,6 +143,7 @@ ImageThumbnail.propTypes = {
width: PropTypes.number,
height: PropTypes.number,
stackPercentComplete: PropTypes.number.isRequired,
showProgressBar: PropTypes.bool,
};
ImageThumbnail.defaultProps = {
@@ -143,6 +152,7 @@ ImageThumbnail.defaultProps = {
stackPercentComplete: 0,
width: 217,
height: 123,
showProgressBar: true,
};
export default ImageThumbnail;
@@ -9,6 +9,7 @@ function StudyBrowser(props) {
onThumbnailClick,
onThumbnailDoubleClick,
supportsDrag,
showThumbnailProgressBar,
} = props;
return (
@@ -28,7 +29,6 @@ function StudyBrowser(props) {
numImageFrames,
SeriesDescription,
SeriesNumber,
stackPercentComplete,
hasWarnings,
} = thumb;
@@ -54,13 +54,13 @@ function StudyBrowser(props) {
SeriesDescription={SeriesDescription}
SeriesNumber={SeriesNumber}
hasWarnings={hasWarnings}
stackPercentComplete={stackPercentComplete}
// Events
onClick={onThumbnailClick.bind(
undefined,
displaySetInstanceUID
)}
onDoubleClick={onThumbnailDoubleClick}
showProgressBar={showThumbnailProgressBar}
/>
</div>
);
@@ -95,6 +95,7 @@ StudyBrowser.propTypes = {
supportsDrag: PropTypes.bool,
onThumbnailClick: PropTypes.func,
onThumbnailDoubleClick: PropTypes.func,
showThumbnailProgressBar: PropTypes.bool,
};
StudyBrowser.defaultProps = {
@@ -102,6 +103,7 @@ StudyBrowser.defaultProps = {
supportsDrag: true,
onThumbnailClick: noop,
onThumbnailDoubleClick: noop,
showThumbnailProgressBar: true,
};
export { StudyBrowser };
@@ -1,34 +1,37 @@
import React, { useState, useEffect } from 'react';
import PropTypes from 'prop-types';
import throttle from 'lodash.throttle';
import { useDrag } from 'react-dnd';
import { classes } from '@ohif/core';
import ImageThumbnail from './ImageThumbnail';
import classNames from 'classnames';
import { Icon } from './../../elements/Icon';
import { Tooltip } from './../tooltip';
import { OverlayTrigger } from './../overlayTrigger';
import './Thumbnail.styl';
const StudyLoadingListener = classes.StudyLoadingListener;
function ThumbnailFooter({
SeriesDescription,
SeriesNumber,
InstanceNumber,
numImageFrames,
hasWarnings
hasWarnings,
}) {
const [inconsistencyWarnings, inconsistencyWarningsSet] = useState([]);
useEffect(() => {
let unmounted = false
let unmounted = false;
hasWarnings.then(response => {
if (!unmounted) {
inconsistencyWarningsSet(response)
inconsistencyWarningsSet(response);
}
})
});
return () => {
unmounted = true
}
}, [])
unmounted = true;
};
}, [hasWarnings]);
const infoOnly = !SeriesDescription;
@@ -41,7 +44,7 @@ function ThumbnailFooter({
);
};
const getWarningContent = (inconsistencyWarnings) => {
const getWarningContent = inconsistencyWarnings => {
if (Array.isArray(inconsistencyWarnings)) {
const listedWarnings = inconsistencyWarnings.map((warn, index) => {
return <li key={index}>{warn}</li>;
@@ -54,8 +57,8 @@ function ThumbnailFooter({
};
const getWarningInfo = (SeriesNumber, inconsistencyWarnings) => {
return(
<React.Fragment>
return (
<React.Fragment>
{inconsistencyWarnings && inconsistencyWarnings.length != 0 ? (
<OverlayTrigger
key={SeriesNumber}
@@ -67,7 +70,9 @@ function ThumbnailFooter({
id="tooltip-left"
>
<div className="warningTitle">Series Inconsistencies</div>
<div className="warningContent">{getWarningContent(inconsistencyWarnings)}</div>
<div className="warningContent">
{getWarningContent(inconsistencyWarnings)}
</div>
</Tooltip>
}
>
@@ -79,9 +84,9 @@ function ThumbnailFooter({
</OverlayTrigger>
) : (
<React.Fragment></React.Fragment>
)}
)}
</React.Fragment>
);
);
};
const getSeriesInformation = (
SeriesNumber,
@@ -92,21 +97,27 @@ function ThumbnailFooter({
if (!SeriesNumber && !InstanceNumber && !numImageFrames) {
return;
}
const seriesInformation =
const seriesInformation = (
<div className="series-information">
{getInfo(SeriesNumber, 'S:')}
{getInfo(InstanceNumber, 'I:')}
{getInfo(numImageFrames, '', 'image-frames')}
{getWarningInfo(SeriesNumber, inconsistencyWarnings)}
</div>
);
return (seriesInformation);
return seriesInformation;
};
return (
<div className={classNames('series-details', { 'info-only': infoOnly })}>
<div className="series-description">{SeriesDescription}</div>
{getSeriesInformation(SeriesNumber, InstanceNumber, numImageFrames, inconsistencyWarnings)}
{getSeriesInformation(
SeriesNumber,
InstanceNumber,
numImageFrames,
inconsistencyWarnings
)}
</div>
);
}
@@ -124,14 +135,37 @@ function Thumbnail(props) {
SeriesDescription,
SeriesNumber,
hasWarnings,
stackPercentComplete,
StudyInstanceUID,
onClick,
onDoubleClick,
onMouseDown,
supportsDrag,
showProgressBar,
} = props;
const [stackPercentComplete, setStackPercentComplete] = useState(0);
useEffect(() => {
const onProgressChange = throttle(({ detail }) => {
const { progressId, progressData } = detail;
if (`StackProgress:${displaySetInstanceUID}` === progressId) {
const percent = progressData ? progressData.percentComplete : 0;
setStackPercentComplete(percent);
}
}, 100);
document.addEventListener(
StudyLoadingListener.events.OnProgress,
onProgressChange
);
return () => {
document.removeEventListener(
StudyLoadingListener.events.OnProgress,
onProgressChange
);
};
}, [displaySetInstanceUID]);
const [collectedProps, drag, dragPreview] = useDrag({
// `droppedItem` in `dropTarget`
// The only data it will have access to
@@ -164,6 +198,7 @@ function Thumbnail(props) {
imageId={imageId}
error={error}
stackPercentComplete={stackPercentComplete}
showProgressBar={showProgressBar}
/>
)}
{/* SHOW TEXT ALTERNATIVE */}
@@ -203,6 +238,7 @@ Thumbnail.propTypes = {
onDoubleClick: PropTypes.func,
onClick: PropTypes.func,
onMouseDown: PropTypes.func,
showProgressBar: PropTypes.bool,
};
Thumbnail.defaultProps = {
@@ -6,10 +6,13 @@ import React, {
useEffect,
} from 'react';
import PropTypes from 'prop-types';
import { classes } from '@ohif/core';
import SnackbarContainer from '../components/snackbar/SnackbarContainer';
import SnackbarTypes from '../components/snackbar/SnackbarTypes';
const { LogManager } = classes;
const SnackbarContext = createContext(null);
export const useSnackbarContext = () => useContext(SnackbarContext);
@@ -28,6 +31,20 @@ const SnackbarProvider = ({ children, service }) => {
const [count, setCount] = useState(1);
const [snackbarItems, setSnackbarItems] = useState([]);
useEffect(() => {
const onLogHandler = ({ type, notify, title, message }) => {
if (notify) {
show({ type, title, message });
}
};
LogManager.subscribe(LogManager.EVENTS.OnLog, onLogHandler);
return () => {
LogManager.subscribe(LogManager.EVENTS.OnLog, onLogHandler);
};
}, [show]);
const show = useCallback(
options => {
if (!options || (!options.title && !options.message)) {
+24 -2
View File
@@ -12,8 +12,6 @@ const CopyWebpackPlugin = require('copy-webpack-plugin');
const ExtractCssChunksPlugin = require('extract-css-chunks-webpack-plugin');
const HtmlWebpackPlugin = require('html-webpack-plugin');
const { InjectManifest } = require('workbox-webpack-plugin');
const TerserJSPlugin = require('terser-webpack-plugin');
const OptimizeCSSAssetsPlugin = require('optimize-css-assets-webpack-plugin');
// ~~ Rules
const extractStyleChunksRule = require('./rules/extractStyleChunks.js');
// ~~ Directories
@@ -49,6 +47,16 @@ module.exports = (env, argv) => {
}
},
},
resolve: {
// We use this alias and the CopyPlugin below to support using the dynamic-import version
// of WADO Image Loader, but only when building a PWA. When we build a package, we must use the
// bundled version of WADO Image Loader so we can produce a single file for the viewer.
// (Note: script-tag version of the viewer will no longer be supported in OHIF v3)
alias: {
'cornerstone-wado-image-loader':
'cornerstone-wado-image-loader/dist/dynamic-import/cornerstoneWADOImageLoader.min.js',
},
},
module: {
rules: [...extractStyleChunksRule(isProdBuild)],
},
@@ -78,6 +86,11 @@ module.exports = (env, argv) => {
from: `${PUBLIC_DIR}/${APP_CONFIG}`,
to: `${DIST_DIR}/app-config.js`,
},
{
from:
'../../../node_modules/cornerstone-wado-image-loader/dist/dynamic-import',
to: DIST_DIR,
},
]),
// https://github.com/faceyspacey/extract-css-chunks-webpack-plugin#webpack-4-standalone-installation
new ExtractCssChunksPlugin({
@@ -102,6 +115,15 @@ module.exports = (env, argv) => {
// maximumFileSizeToCacheInBytes: 4 * 1024 * 1024
}),
],
optimization: {
splitChunks: {
// include all types of chunks
chunks: 'all',
},
//runtimeChunk: 'single',
minimize: isProdBuild,
sideEffects: true,
},
// https://webpack.js.org/configuration/dev-server/
devServer: {
// gzip compression of everything served
+65
View File
@@ -3,6 +3,71 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [4.11.2](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.11.1...@ohif/viewer@4.11.2) (2021-09-28)
**Note:** Version bump only for package @ohif/viewer
## [4.11.1](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.11.0...@ohif/viewer@4.11.1) (2021-09-24)
**Note:** Version bump only for package @ohif/viewer
# [4.11.0](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.10.1...@ohif/viewer@4.11.0) (2021-09-23)
### Features
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
## [4.10.1](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.10.0...@ohif/viewer@4.10.1) (2021-09-13)
**Note:** Version bump only for package @ohif/viewer
# [4.10.0](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.24...@ohif/viewer@4.10.0) (2021-09-09)
### Features
* OHIF-1000: Study prefetcher ([#2466](https://github.com/OHIF/Viewers/issues/2466)) ([8f26045](https://github.com/OHIF/Viewers/commit/8f2604509d24092b721f1333289d838820d68cac))
## [4.9.24](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.23...@ohif/viewer@4.9.24) (2021-09-03)
**Note:** Version bump only for package @ohif/viewer
## [4.9.23](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.22...@ohif/viewer@4.9.23) (2021-08-30)
### Bug Fixes
* MPR metadata parsing for spacings ([#2517](https://github.com/OHIF/Viewers/issues/2517)) ([715dfc5](https://github.com/OHIF/Viewers/commit/715dfc556a3883de31d74012dcc99e431d91f57d))
## [4.9.22](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.21...@ohif/viewer@4.9.22) (2021-08-19)
@@ -333,6 +333,7 @@ describe('OHIF User Preferences', () => {
.scrollIntoView()
.click();
// Header should be in "English (USA)""
cy.get('.research-use')
.scrollIntoView()
@@ -560,6 +561,13 @@ describe('OHIF User Preferences', () => {
.scrollIntoView()
.click();
// Close Success Message overlay (if displayed)
cy.get('body').then(body => {
if (body.find('.sb-closeIcon').length > 0) {
cy.get('.sb-closeIcon').click({ force: true });
}
});
// Open User Preferences modal again
cy.openPreferences();
@@ -668,6 +676,13 @@ describe('OHIF User Preferences', () => {
// Save changes
cy.get('@saveBtn').click();
// Close Success Message overlay (if displayed)
cy.get('body').then(body => {
if (body.find('.sb-closeIcon').length > 0) {
cy.get('.sb-closeIcon').click({ force: true });
}
});
// Open User Preferences modal
cy.openPreferences();
// Navigate to Window Level tab
+6 -4
View File
@@ -504,6 +504,9 @@ Cypress.Commands.add('resetUserHotkeyPreferences', () => {
cy.get('@restoreBtn').click();
});
// Click on Save Button
cy.get('@saveBtn').click();
// Close Success Message overlay (if displayed)
cy.get('body').then(body => {
if (body.find('.sb-closeIcon').length > 0) {
@@ -511,8 +514,6 @@ Cypress.Commands.add('resetUserHotkeyPreferences', () => {
.first()
.click({ force: true });
}
// Click on Save Button
cy.get('@saveBtn').click();
});
});
@@ -525,6 +526,9 @@ Cypress.Commands.add('resetUserGeneralPreferences', () => {
cy.get('@restoreBtn').click();
});
// Click on Save Button
cy.get('@saveBtn').click();
// Close Success Message overlay (if displayed)
cy.get('body').then(body => {
if (body.find('.sb-closeIcon').length > 0) {
@@ -532,8 +536,6 @@ Cypress.Commands.add('resetUserGeneralPreferences', () => {
.first()
.click({ force: true });
}
// Click on Save Button
cy.get('@saveBtn').click();
});
});
+16 -18
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/viewer",
"version": "4.9.22",
"version": "4.11.2",
"description": "OHIF Viewer",
"author": "OHIF Contributors",
"license": "MIT",
@@ -19,14 +19,12 @@
"scripts": {
"build:package": "cross-env NODE_ENV=production node --max_old_space_size=4096 ./../../node_modules/webpack/bin/webpack.js --config .webpack/webpack.commonjs.js --progress",
"build:viewer": "cross-env NODE_ENV=production node --max_old_space_size=4096 ./../../node_modules/webpack/bin/webpack.js --config .webpack/webpack.pwa.js --progress",
"build:viewer:lesion-tracker": "cross-env ENTRY_TARGET=index-lesion-tracker.js NODE_ENV=production node --max_old_space_size=4096 ./../../node_modules/webpack/bin/webpack.js --config .webpack/webpack.pwa.js --progress",
"build:viewer:ci": "cross-env NODE_ENV=production PUBLIC_URL=/pwa/ APP_CONFIG=config/netlify.js QUICK_BUILD=true node --max_old_space_size=4096 ./../../node_modules/webpack/bin/webpack.js --config .webpack/webpack.pwa.js",
"build:viewer:demo": "cross-env NODE_ENV=production APP_CONFIG=config/demo.js HTML_TEMPLATE=rollbar.html QUICK_BUILD=true node --max_old_space_size=4096 ./../../node_modules/webpack/bin/webpack.js --progress --config .webpack/webpack.pwa.js",
"build:viewer:package": "yarn run build:package",
"dev": "cross-env NODE_ENV=development webpack-dev-server --config .webpack/webpack.pwa.js --watch",
"dev:orthanc": "cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker_nginx-orthanc.js webpack-dev-server --config .webpack/webpack.pwa.js --watch",
"dev:viewer": "yarn run dev",
"dev:viewer:lesion-tracker": "cross-env ENTRY_TARGET=index-lesion-tracker.js NODE_ENV=development webpack-dev-server --config .webpack/webpack.pwa.js --watch",
"start": "yarn run dev",
"test:e2e": "cypress open",
"test:e2e:ci": "percy exec -- cypress run --config video=false --record --browser chrome --spec 'cypress/integration/visual-regression/**/*'",
@@ -49,27 +47,27 @@
},
"dependencies": {
"@babel/runtime": "^7.5.5",
"@ohif/core": "^2.13.13",
"@ohif/extension-cornerstone": "^2.10.10",
"@ohif/extension-debugging": "^0.2.2",
"@ohif/extension-dicom-html": "^1.3.10",
"@ohif/core": "^2.15.1",
"@ohif/extension-cornerstone": "^2.12.1",
"@ohif/extension-debugging": "^0.3.0",
"@ohif/extension-dicom-html": "^1.3.11",
"@ohif/extension-dicom-microscopy": "^0.52.0",
"@ohif/extension-dicom-pdf": "^1.0.6",
"@ohif/extension-dicom-rt": "^0.6.13",
"@ohif/extension-dicom-segmentation": "^0.6.10",
"@ohif/extension-dicom-pdf": "^1.1.0",
"@ohif/extension-dicom-rt": "^0.7.1",
"@ohif/extension-dicom-segmentation": "^0.7.1",
"@ohif/extension-lesion-tracker": "^0.2.1",
"@ohif/extension-vtk": "^1.11.14",
"@ohif/extension-vtk": "^1.12.2",
"@ohif/i18n": "^0.53.0",
"@ohif/ui": "^1.9.2",
"@ohif/ui": "^1.10.2",
"@tanem/react-nprogress": "^1.1.25",
"classnames": "^2.2.6",
"core-js": "^3.2.1",
"cornerstone-core": "^2.2.8",
"cornerstone-math": "^0.1.8",
"cornerstone-tools": "^4.20.1",
"cornerstone-wado-image-loader": "^3.1.0",
"dcmjs": "0.18.8",
"dicom-parser": "^1.8.3",
"cornerstone-core": "^2.5.0",
"cornerstone-math": "^0.1.9",
"cornerstone-tools": "^6.0.0",
"cornerstone-wado-image-loader": "^4.0.3",
"dcmjs": "0.18.9",
"dicom-parser": "^1.8.9",
"dicomweb-client": "^0.8.1",
"hammerjs": "^2.0.8",
"i18next": "^17.0.3",
+10 -1
View File
@@ -5,6 +5,15 @@ window.config = {
showStudyList: true,
filterQueryParam: false,
disableServersCache: false,
studyPrefetcher: {
enabled: true,
order: 'closest',
displaySetCount: 3,
preventCache: false,
prefetchDisplaySetsTimeout: 300,
displayProgress: true,
includeActiveDisplaySet: true,
},
servers: {
dicomWeb: [
{
@@ -124,6 +133,6 @@ window.config = {
// If the server is particularly slow to respond to series metadata
// requests as it extracts the metadata from raw files everytime,
// try setting this to even lower value
// Leave it undefined for no limit, sutiable for HTTP/2 enabled servers
// Leave it undefined for no limit, suitable for HTTP/2 enabled servers
// maxConcurrentMetadataRequests: 5,
};
+9
View File
@@ -1,6 +1,15 @@
window.config = {
routerBasename: '/pwa',
showStudyList: true,
studyPrefetcher: {
enabled: true,
order: 'closest',
displaySetCount: 3,
preventCache: false,
prefetchDisplaySetsTimeout: 300,
displayProgress: true,
includeActiveDisplaySet: true,
},
servers: {
dicomWeb: [
{
@@ -1,42 +1,23 @@
import { Component } from "react";
import PropTypes from "prop-types";
import OHIF from "@ohif/core";
import { useEffect } from 'react';
import OHIF from '@ohif/core';
class StudyLoadingMonitor extends Component {
static propTypes = {
studies: PropTypes.array.isRequired,
setStudyLoadingProgress: PropTypes.func.isRequired,
clearStudyLoadingProgress: PropTypes.func.isRequired
};
const { StudyLoadingListener } = OHIF.classes;
componentDidMount() {
// TODO: This is pretty ugly. The thing is that the StudyLoadingListener
// needs to update the Redux store, but shouldn't know that it exists.
// I am therefore passing in some functions to update the store instead,
// but this should definitely be cleaned up somehow.
const options = {
_setProgressData: (progressId, progressData) => {
this.props.setStudyLoadingProgress(progressId, progressData);
},
_clearProgressById: progressId => {
this.props.clearStudyLoadingProgress(progressId);
}
const StudyLoadingMonitor = ({ studies }) => {
useEffect(() => {
const studyLoadingListener = StudyLoadingListener.getInstance();
if (studies && studies.length > 0) {
studyLoadingListener.clear();
studyLoadingListener.addStudies(studies);
}
return () => {
studyLoadingListener.clear();
};
}, [studies]);
const { StudyLoadingListener } = OHIF.classes;
this.studyLoadingListener = StudyLoadingListener.getInstance(options);
this.studyLoadingListener.clear();
this.studyLoadingListener.addStudies(this.props.studies);
}
render() {
return null;
}
componentWillUnmount() {
// Destroy stack loading listeners when we close the viewer
this.studyLoadingListener.clear();
}
}
return null;
};
export default StudyLoadingMonitor;
@@ -0,0 +1,15 @@
.StudyPrefetcher {
height: 5px;
width: 100%;
display: flex;
flex-direction: row;
background-color: var(--default-color);
}
.StudyPrefetcher .item {
height: 5px;
}
.StudyPrefetcher .item.cached {
background-color: black;
}
@@ -1,29 +1,93 @@
import { Component } from "react";
import PropTypes from "prop-types";
import OHIF from "@ohif/core";
import React, { useEffect } from 'react';
import { classes, utils } from '@ohif/core';
import PropTypes from 'prop-types';
import cs from 'cornerstone-core';
const { StudyPrefetcher } = OHIF.classes;
import './StudyPrefetcher.css';
class StudyPrefetcherComponent extends Component {
static propTypes = {
studies: PropTypes.array
};
const StudyPrefetcher = ({ studies, options }) => {
useEffect(() => {
const studyPrefetcher = classes.StudyPrefetcher.getInstance(
studies,
options
);
const studiesMetadata = studies.map(s =>
utils.studyMetadataManager.get(s.StudyInstanceUID)
);
studyPrefetcher.setStudies(studiesMetadata);
componentDidMount() {
const { studies } = this.props;
const onNewImage = ({ detail }) => {
/**
* When images are cached the viewport will load instantly and
* the display sets will not be available at this point in time.
*
* This code add display sets and updates the study prefetcher metadata.
*/
const studiesMetadata = studies.map(s => {
const studyMetadata = utils.studyMetadataManager.get(
s.StudyInstanceUID
);
const displaySets = studyMetadata.getDisplaySets();
if (!displaySets || displaySets.length < 1) {
s.displaySets.forEach(ds => studyMetadata.addDisplaySet(ds));
}
return studyMetadata;
});
studyPrefetcher.setStudies(studiesMetadata);
this.studyPrefetcher = StudyPrefetcher.getInstance();
this.studyPrefetcher.setStudies(studies);
}
const study = studyPrefetcher.getStudy(detail.image);
const series = studyPrefetcher.getSeries(study, detail.image);
const instance = studyPrefetcher.getInstance(series, detail.image);
render() {
return null;
}
if (study.displaySets && study.displaySets.length > 0) {
const {
displaySetInstanceUID,
} = studyPrefetcher.getDisplaySetBySOPInstanceUID(
study.displaySets,
instance
);
studyPrefetcher.prefetch(detail.element, displaySetInstanceUID);
}
};
componentWillUnmount() {
// Stop prefetching when we close the viewer
this.studyPrefetcher.destroy();
}
}
const onElementEnabled = ({ detail }) => {
detail.element.addEventListener(cs.EVENTS.NEW_IMAGE, onNewImage);
};
export default StudyPrefetcherComponent;
cs.events.addEventListener(cs.EVENTS.ELEMENT_ENABLED, onElementEnabled);
return () => {
cs.events.removeEventListener(
cs.EVENTS.ELEMENT_ENABLED,
onElementEnabled
);
studyPrefetcher.destroy();
};
}, [options, studies]);
return null;
};
StudyPrefetcher.propTypes = {
studies: PropTypes.array.isRequired,
options: PropTypes.shape({
enabled: PropTypes.bool,
order: PropTypes.string,
displaySetCount: PropTypes.number,
preventCache: PropTypes.bool,
prefetchDisplaySetsTimeout: PropTypes.number,
includeActiveDisplaySet: PropTypes.bool,
}),
};
StudyPrefetcher.defaultProps = {
options: {
order: 'closest',
displaySetCount: 1,
preventCache: false,
prefetchDisplaySetsTimeout: 300,
includeActiveDisplaySet: false,
},
};
export default StudyPrefetcher;
@@ -1,44 +1,11 @@
import OHIF from '@ohif/core';
import { connect } from 'react-redux';
import { StudyBrowser } from '@ohif/ui';
import cloneDeep from 'lodash.clonedeep';
import findDisplaySetByUID from './findDisplaySetByUID';
import { servicesManager } from './../App.js';
const { studyMetadataManager } = OHIF.utils;
import { StudyBrowser } from '../../../ui/src/components/studyBrowser/StudyBrowser';
const { setActiveViewportSpecificData } = OHIF.redux.actions;
// TODO
// - Determine in which display set is active from Redux (activeViewportIndex and layout viewportData)
// - Pass in errors and stack loading progress from Redux
const mapStateToProps = (state, ownProps) => {
// If we know that the stack loading progress details have changed,
// we can try to update the component state so that the thumbnail
// progress bar is updated
const stackLoadingProgressMap = state.loading.progress;
const studiesWithLoadingData = cloneDeep(ownProps.studies);
studiesWithLoadingData.forEach(study => {
study.thumbnails.forEach(data => {
const { displaySetInstanceUID } = data;
const stackId = `StackProgress:${displaySetInstanceUID}`;
const stackProgressData = stackLoadingProgressMap[stackId];
let stackPercentComplete = 0;
if (stackProgressData) {
stackPercentComplete = stackProgressData.percentComplete;
}
data.stackPercentComplete = stackPercentComplete;
});
});
return {
studies: studiesWithLoadingData,
};
};
const mapDispatchToProps = (dispatch, ownProps) => {
return {
onThumbnailClick: displaySetInstanceUID => {
@@ -50,7 +17,10 @@ const mapDispatchToProps = (dispatch, ownProps) => {
if (displaySet.isDerived) {
const { Modality } = displaySet;
if (Modality === 'SEG' && servicesManager) {
const {LoggerService, UINotificationService} = servicesManager.services;
const {
LoggerService,
UINotificationService,
} = servicesManager.services;
const onDisplaySetLoadFailureHandler = error => {
LoggerService.error({ error, message: error.message });
UINotificationService.show({
@@ -61,20 +31,25 @@ const mapDispatchToProps = (dispatch, ownProps) => {
});
};
const {referencedDisplaySet, activatedLabelmapPromise} = displaySet.getSourceDisplaySet(
const {
referencedDisplaySet,
activatedLabelmapPromise,
} = displaySet.getSourceDisplaySet(
ownProps.studyMetadata,
true,
onDisplaySetLoadFailureHandler
);
displaySet = referencedDisplaySet;
activatedLabelmapPromise.then((activatedLabelmapIndex) => {
const selectionFired = new CustomEvent("extensiondicomsegmentationsegselected", {
"detail": {"activatedLabelmapIndex":activatedLabelmapIndex}
});
activatedLabelmapPromise.then(activatedLabelmapIndex => {
const selectionFired = new CustomEvent(
'extensiondicomsegmentationsegselected',
{
detail: { activatedLabelmapIndex: activatedLabelmapIndex },
}
);
document.dispatchEvent(selectionFired);
});
} else {
displaySet = displaySet.getSourceDisplaySet(ownProps.studyMetadata);
}
@@ -96,7 +71,7 @@ const mapDispatchToProps = (dispatch, ownProps) => {
};
const ConnectedStudyBrowser = connect(
mapStateToProps,
null,
mapDispatchToProps
)(StudyBrowser);
@@ -1,26 +0,0 @@
import { connect } from "react-redux";
import StudyLoadingMonitor from "../components/StudyLoadingMonitor.js";
import OHIF from "@ohif/core";
const {
setStudyLoadingProgress,
clearStudyLoadingProgress
} = OHIF.redux.actions;
const mapDispatchToProps = dispatch => {
return {
setStudyLoadingProgress: (progressId, progressData) => {
dispatch(setStudyLoadingProgress(progressId, progressData));
},
clearStudyLoadingProgress: progressId => {
dispatch(clearStudyLoadingProgress(progressId));
}
};
};
const ConnectedStudyLoadingMonitor = connect(
null,
mapDispatchToProps
)(StudyLoadingMonitor);
export default ConnectedStudyLoadingMonitor;
@@ -96,6 +96,8 @@ class ToolbarRow extends Component {
value: menuOption.target,
icon: menuOption.icon,
bottomLabel: menuOption.label,
badgeNumber: menuOption.badgeNumber,
stateEvent: menuOption.stateEvent,
};
const from = menuOption.from || 'right';
+164 -83
View File
@@ -1,11 +1,10 @@
import React, { Component } from 'react';
import PropTypes from 'prop-types';
import classNames from 'classnames';
import { useLogger } from '@ohif/ui';
import OHIF, { MODULE_TYPES, DICOMSR } from '@ohif/core';
import { withDialog } from '@ohif/ui';
import moment from 'moment';
import ConnectedHeader from './ConnectedHeader.js';
import ToolbarRow from './ToolbarRow.js';
import ConnectedStudyBrowser from './ConnectedStudyBrowser.js';
@@ -14,7 +13,6 @@ import SidePanel from './../components/SidePanel.js';
import ErrorBoundaryDialog from './../components/ErrorBoundaryDialog';
import { extensionManager } from './../App.js';
import { ReconstructionIssues } from './../../../core/src/enums.js';
import dcmjs from 'dcmjs';
// Contexts
import WhiteLabelingContext from '../context/WhiteLabelingContext.js';
@@ -22,8 +20,8 @@ import UserManagerContext from '../context/UserManagerContext';
import AppContext from '../context/AppContext';
import './Viewer.css';
import { finished } from 'stream';
import { cornerstoneWADOImageLoader } from 'cornerstone-wado-image-loader';
import StudyPrefetcher from '../components/StudyPrefetcher.js';
import StudyLoadingMonitor from '../components/StudyLoadingMonitor';
class Viewer extends Component {
static propTypes = {
@@ -197,11 +195,17 @@ class Viewer extends Component {
]);
}
const activeViewport = this.props.viewports[this.props.activeViewportIndex];
const activeDisplaySetInstanceUID =
activeViewport ? activeViewport.displaySetInstanceUID : undefined;
const activeViewport = this.props.viewports[
this.props.activeViewportIndex
];
const activeDisplaySetInstanceUID = activeViewport
? activeViewport.displaySetInstanceUID
: undefined;
this.setState({
thumbnails: _mapStudiesToThumbnails(studies, activeDisplaySetInstanceUID),
thumbnails: _mapStudiesToThumbnails(
studies,
activeDisplaySetInstanceUID
),
});
}
}
@@ -211,24 +215,31 @@ class Viewer extends Component {
studies,
isStudyLoaded,
activeViewportIndex,
viewports
viewports,
} = this.props;
const activeViewport = viewports[activeViewportIndex];
const activeDisplaySetInstanceUID =
activeViewport ? activeViewport.displaySetInstanceUID : undefined;
const activeDisplaySetInstanceUID = activeViewport
? activeViewport.displaySetInstanceUID
: undefined;
const prevActiveViewport = prevProps.viewports[prevProps.activeViewportIndex];
const prevActiveDisplaySetInstanceUID =
prevActiveViewport ? prevActiveViewport.displaySetInstanceUID : undefined;
const prevActiveViewport =
prevProps.viewports[prevProps.activeViewportIndex];
const prevActiveDisplaySetInstanceUID = prevActiveViewport
? prevActiveViewport.displaySetInstanceUID
: undefined;
if (studies !== prevProps.studies ||
if (
studies !== prevProps.studies ||
activeViewportIndex !== prevProps.activeViewportIndex ||
activeDisplaySetInstanceUID !== prevActiveDisplaySetInstanceUID
) {
) {
this.setState({
thumbnails: _mapStudiesToThumbnails(studies, activeDisplaySetInstanceUID),
thumbnails: _mapStudiesToThumbnails(
studies,
activeDisplaySetInstanceUID
),
activeDisplaySetInstanceUID,
});
}
if (isStudyLoaded && isStudyLoaded !== prevProps.isStudyLoaded) {
@@ -288,14 +299,12 @@ class Viewer extends Component {
</UserManagerContext.Consumer>
)}
</WhiteLabelingContext.Consumer>
{/* TOOLBAR */}
<ErrorBoundaryDialog context="ToolbarRow">
<ToolbarRow
activeViewport={
this.props.viewports[this.props.activeViewportIndex]
}
isDerivedDisplaySetsLoaded={this.props.isDerivedDisplaySetsLoaded}
isLeftSidePanelOpen={this.state.isLeftSidePanelOpen}
isRightSidePanelOpen={this.state.isRightSidePanelOpen}
selectedLeftSidePanel={
@@ -332,10 +341,9 @@ class Viewer extends Component {
studies={this.props.studies}
/>
</ErrorBoundaryDialog>
{/*<ConnectedStudyLoadingMonitor studies={this.props.studies} />*/}
{/*<StudyPrefetcher studies={this.props.studies} />*/}
<AppContext.Consumer>
{appContext => <StudyLoadingMonitor studies={this.props.studies} />}
</AppContext.Consumer>
{/* VIEWPORTS + SIDEPANELS */}
<div className="FlexboxLayout">
{/* LEFT */}
@@ -348,10 +356,24 @@ class Viewer extends Component {
activeIndex={this.props.activeViewportIndex}
/>
) : (
<ConnectedStudyBrowser
studies={this.state.thumbnails}
studyMetadata={this.props.studies}
/>
<AppContext.Consumer>
{appContext => {
const { appConfig } = appContext;
const { studyPrefetcher } = appConfig;
const { thumbnails } = this.state;
return (
<ConnectedStudyBrowser
studies={thumbnails}
studyMetadata={this.props.studies}
showThumbnailProgressBar={
studyPrefetcher &&
studyPrefetcher.enabled &&
studyPrefetcher.displayProgress
}
/>
);
}}
</AppContext.Consumer>
)}
</SidePanel>
</ErrorBoundaryDialog>
@@ -359,6 +381,22 @@ class Viewer extends Component {
{/* MAIN */}
<div className={classNames('main-content')}>
<ErrorBoundaryDialog context="ViewerMain">
<AppContext.Consumer>
{appContext => {
const { appConfig } = appContext;
const { studyPrefetcher } = appConfig;
const { studies } = this.props;
return (
studyPrefetcher &&
studyPrefetcher.enabled && (
<StudyPrefetcher
studies={studies}
options={studyPrefetcher}
/>
)
);
}}
</AppContext.Consumer>
<ConnectedViewerMain
studies={this.props.studies}
isStudyLoaded={this.props.isStudyLoaded}
@@ -410,31 +448,46 @@ export default withDialog(Viewer);
* @param {*object} displaySet
* @returns {[string]} an array of strings containing the warnings
*/
const _checkForSeriesInconsistencesWarnings = async function (displaySet, studies) {
const _checkForSeriesInconsistencesWarnings = async function(
displaySet,
studies
) {
if (displaySet.inconsistencyWarnings) {
// warnings already checked and cached in displaySet
return displaySet.inconsistencyWarnings;
}
const inconsistencyWarnings = [];
if (displaySet.Modality !== 'SEG') {
if (displaySet.reconstructionIssues && displaySet.reconstructionIssues.length !== 0) {
if (
displaySet.reconstructionIssues &&
displaySet.reconstructionIssues.length !== 0
) {
displaySet.reconstructionIssues.forEach(warning => {
switch (warning) {
case ReconstructionIssues.DATASET_4D:
inconsistencyWarnings.push('The dataset is 4D.');
break;
case ReconstructionIssues.VARYING_IMAGESDIMENSIONS:
inconsistencyWarnings.push('The dataset frames have different dimensions (rows, columns).');
inconsistencyWarnings.push(
'The dataset frames have different dimensions (rows, columns).'
);
break;
case ReconstructionIssues.VARYING_IMAGESCOMPONENTS:
inconsistencyWarnings.push('The dataset frames have different components (Sample per pixel).');
inconsistencyWarnings.push(
'The dataset frames have different components (Sample per pixel).'
);
break;
case ReconstructionIssues.VARYING_IMAGESORIENTATION:
inconsistencyWarnings.push('The dataset frames have different orientation.');
inconsistencyWarnings.push(
'The dataset frames have different orientation.'
);
break;
case ReconstructionIssues.IRREGULAR_SPACING:
inconsistencyWarnings.push('The dataset frames have different pixel spacing.');
inconsistencyWarnings.push(
'The dataset frames have different pixel spacing.'
);
break;
case ReconstructionIssues.MULTIFFRAMES:
inconsistencyWarnings.push('The dataset is a multiframes.');
@@ -443,39 +496,52 @@ const _checkForSeriesInconsistencesWarnings = async function (displaySet, studie
break;
}
});
inconsistencyWarnings.push('The datasets is not a reconstructable 3D volume. MPR mode is not available.');
inconsistencyWarnings.push(
'The datasets is not a reconstructable 3D volume. MPR mode is not available.'
);
}
if (displaySet.missingFrames &&
if (
displaySet.missingFrames &&
(!displaySet.reconstructionIssues ||
(displaySet.reconstructionIssues && !displaySet.reconstructionIssues.find(warn => warn === ReconstructionIssues.DATASET_4D)))) {
inconsistencyWarnings.push('The datasets is missing frames: ' + displaySet.missingFrames + '.');
(displaySet.reconstructionIssues &&
!displaySet.reconstructionIssues.find(
warn => warn === ReconstructionIssues.DATASET_4D
)))
) {
inconsistencyWarnings.push(
'The datasets is missing frames: ' + displaySet.missingFrames + '.'
);
}
} else {
const segMetadata = displaySet.metadata;
if (!segMetadata) {
displaySet.inconsistencyWarnings = inconsistencyWarnings;
return inconsistencyWarnings;
}
const { referencedDisplaySet } = displaySet.getSourceDisplaySet(studies, false);
const { referencedDisplaySet } = displaySet.getSourceDisplaySet(
studies,
false
);
if (!referencedDisplaySet) {
displaySet.inconsistencyWarnings = inconsistencyWarnings;
return inconsistencyWarnings;
}
const imageIds = referencedDisplaySet.images.map(image => image.getImageId());
const imageIds = referencedDisplaySet.images.map(image =>
image.getImageId()
);
if (!imageIds || imageIds.length === 0) {
displaySet.inconsistencyWarnings = inconsistencyWarnings;
return inconsistencyWarnings;
}
for (
let i = 0, groupsLen = segMetadata.PerFrameFunctionalGroupsSequence.length;
let i = 0,
groupsLen = segMetadata.PerFrameFunctionalGroupsSequence.length;
i < groupsLen;
++i
) {
const PerFrameFunctionalGroups = segMetadata.PerFrameFunctionalGroupsSequence[i];
const PerFrameFunctionalGroups =
segMetadata.PerFrameFunctionalGroupsSequence[i];
if (!PerFrameFunctionalGroups) {
continue;
}
@@ -485,29 +551,27 @@ const _checkForSeriesInconsistencesWarnings = async function (displaySet, studie
SourceImageSequence = segMetadata.SourceImageSequence[i];
} else if (PerFrameFunctionalGroups.DerivationImageSequence) {
SourceImageSequence =
PerFrameFunctionalGroups.DerivationImageSequence
.SourceImageSequence;
PerFrameFunctionalGroups.DerivationImageSequence.SourceImageSequence;
}
if (!SourceImageSequence) {
if (inconsistencyWarnings.length === 0) {
const warningMessage = 'The segmentation ' +
const warningMessage =
'The segmentation ' +
'has frames out of plane respect to the source images.';
inconsistencyWarnings.push(warningMessage);
inconsistencyWarnings.push(warningMessage);
}
continue;
}
const {
ReferencedSOPInstanceUID,
} = SourceImageSequence;
const { ReferencedSOPInstanceUID } = SourceImageSequence;
const imageId = imageIds.find(imageId => {
const sopCommonModule = cornerstone.metaData.get(
"sopCommonModule",
imageId
'sopCommonModule',
imageId
);
if (!sopCommonModule) {
return;
return;
}
return sopCommonModule.sopInstanceUID === ReferencedSOPInstanceUID;
@@ -517,33 +581,32 @@ const _checkForSeriesInconsistencesWarnings = async function (displaySet, studie
continue;
}
const sourceImageMetadata = cornerstone.metaData.get(
"instance",
imageId
);
const sourceImageMetadata = cornerstone.metaData.get('instance', imageId);
if (
segMetadata.Rows !== sourceImageMetadata.Rows ||
segMetadata.Columns !== sourceImageMetadata.Columns
) {
const warningMessage = 'The segmentation ' +
const warningMessage =
'The segmentation ' +
'has frames with different geometry ' +
'dimensions (Rows and Columns) respect to the source images.';
inconsistencyWarnings.push(warningMessage);
inconsistencyWarnings.push(warningMessage);
break;
}
}
if (inconsistencyWarnings.length !== 0) {
const warningMessage = 'The segmentation format is not supported yet. ' +
const warningMessage =
'The segmentation format is not supported yet. ' +
'The segmentation data (segments) could not be loaded.';
inconsistencyWarnings.push(warningMessage);
inconsistencyWarnings.push(warningMessage);
}
}
// cache the warnings
displaySet.inconsistencyWarnings = inconsistencyWarnings;
return inconsistencyWarnings;
}
};
/**
* Checks if display set is active, i.e. if the series is currently shown
@@ -562,30 +625,42 @@ const _checkForSeriesInconsistencesWarnings = async function (displaySet, studie
* @param {string} activeDisplaySetInstanceUID
* @returns {boolean} is active.
*/
const _isDisplaySetActive = function(displaySet, studies, activeDisplaySetInstanceUID) {
const _isDisplaySetActive = function(
displaySet,
studies,
activeDisplaySetInstanceUID
) {
let active = false;
const {
displaySetInstanceUID,
} = displaySet;
const { displaySetInstanceUID } = displaySet;
// TO DO: in the future, we could possibly support new modalities
// we should have a list of all modalities here, instead of having hard coded checks
if (displaySet.Modality !== 'SEG' &&
if (
displaySet.Modality !== 'SEG' &&
displaySet.Modality !== 'RTSTRUCT' &&
displaySet.Modality !== 'RTDOSE') {
displaySet.Modality !== 'RTDOSE'
) {
active = activeDisplaySetInstanceUID === displaySetInstanceUID;
} else if (displaySet.getSourceDisplaySet){
} else if (displaySet.getSourceDisplaySet) {
if (displaySet.Modality === 'SEG') {
const { referencedDisplaySet } = displaySet.getSourceDisplaySet(studies, false);
active = referencedDisplaySet ?
activeDisplaySetInstanceUID === referencedDisplaySet.displaySetInstanceUID :
false;
const { referencedDisplaySet } = displaySet.getSourceDisplaySet(
studies,
false
);
active = referencedDisplaySet
? activeDisplaySetInstanceUID ===
referencedDisplaySet.displaySetInstanceUID
: false;
} else {
const referencedDisplaySet = displaySet.getSourceDisplaySet(studies, false);
active = referencedDisplaySet ?
activeDisplaySetInstanceUID === referencedDisplaySet.displaySetInstanceUID :
false;
const referencedDisplaySet = displaySet.getSourceDisplaySet(
studies,
false
);
active = referencedDisplaySet
? activeDisplaySetInstanceUID ===
referencedDisplaySet.displaySetInstanceUID
: false;
}
}
@@ -629,11 +704,17 @@ const _mapStudiesToThumbnails = function(studies, activeDisplaySetInstanceUID) {
altImageText = displaySet.Modality ? displaySet.Modality : 'UN';
}
const hasWarnings = _checkForSeriesInconsistencesWarnings(displaySet, studies);
const active = _isDisplaySetActive(displaySet, studies, activeDisplaySetInstanceUID)
const hasWarnings = _checkForSeriesInconsistencesWarnings(
displaySet,
studies
);
return {
active,
active: _isDisplaySetActive(
displaySet,
studies,
activeDisplaySetInstanceUID
),
imageId,
altImageText,
displaySetInstanceUID,
+88 -45
View File
@@ -1337,6 +1337,21 @@
exec-sh "^0.3.2"
minimist "^1.2.0"
"@cornerstonejs/codec-charls@^0.1.1":
version "0.1.1"
resolved "https://registry.yarnpkg.com/@cornerstonejs/codec-charls/-/codec-charls-0.1.1.tgz#e55d4aa908732d0cc902888b7f3856c5a996df7f"
integrity sha512-Y250DGVzmownJ7WgpHxNqWvfTnv4/malaKm/tWm0xE1FxhQE8iErMWFpKxpNDk3MdfXO4/98piVsUwmJMiWoDQ==
"@cornerstonejs/codec-libjpeg-turbo-8bit@^0.0.7":
version "0.0.7"
resolved "https://registry.yarnpkg.com/@cornerstonejs/codec-libjpeg-turbo-8bit/-/codec-libjpeg-turbo-8bit-0.0.7.tgz#2ea9b575eed19e6e7e3701b7a50a4ae0ffbef0c4"
integrity sha512-qgm6BuVAy5mNP8SJ+A6+VbmPnqgj8jPvJrw4HbUoAzndmf9/VHjTYwawn3kmZWya5ErFAsXQ6c0U0noB1LKAiA==
"@cornerstonejs/codec-openjpeg@^0.1.0":
version "0.1.0"
resolved "https://registry.yarnpkg.com/@cornerstonejs/codec-openjpeg/-/codec-openjpeg-0.1.0.tgz#5bca10ae2980ff681ebcdace2074a0adaf12ad86"
integrity sha512-9mwseBidYPQ1rGPcUU8JriQnzUi5Bgtontqca7gw47uzxC4Zamoc1Kuho5LUpbS1LSnOLePOkDrg/LCYhJIq8g==
"@csstools/convert-colors@^1.4.0":
version "1.4.0"
resolved "https://registry.yarnpkg.com/@csstools/convert-colors/-/convert-colors-1.4.0.tgz#ad495dc41b12e75d588c6db8b9834f08fa131eb7"
@@ -3085,6 +3100,11 @@
"@types/prop-types" "*"
csstype "^2.2.0"
"@types/resize-observer-browser@^0.1.6":
version "0.1.6"
resolved "https://registry.yarnpkg.com/@types/resize-observer-browser/-/resize-observer-browser-0.1.6.tgz#d8e6c2f830e2650dc06fe74464472ff64b54a302"
integrity sha512-61IfTac0s9jvNtBCpyo86QeaN8qqpMGHdK0uGKCCIy2dt5/Yk84VduHIdWAcmkC5QvdkPL0p5eWYgUZtHKKUVg==
"@types/resolve@0.0.8":
version "0.0.8"
resolved "https://registry.yarnpkg.com/@types/resolve/-/resolve-0.0.8.tgz#f26074d238e02659e323ce1a13d041eee280e194"
@@ -5265,6 +5285,11 @@ classnames@2.2.6, classnames@^2.2.5, classnames@^2.2.6:
resolved "https://registry.yarnpkg.com/classnames/-/classnames-2.2.6.tgz#43935bffdd291f326dad0a205309b38d00f650ce"
integrity sha512-JR/iSQOSt+LQIWwrwEzJ9uk0xfN3mTVYMwt1Ir5mUcSN6pU+V4zQFFaJsclJbPuAUQH+yfWef6tm7l1quW3C8Q==
classnames@^2.3.1:
version "2.3.1"
resolved "https://registry.yarnpkg.com/classnames/-/classnames-2.3.1.tgz#dfcfa3891e306ec1dad105d0e88f4417b8535e8e"
integrity sha512-OlQdbZ7gLfGarSqxesMesDa5uz7KFbID8Kpq/SxIoNGDqY8lSYs0D+hhtBXhcdB3rcbXArFr7vlHheLk1voeNA==
clean-css@4.2.x, clean-css@^4.2.1:
version "4.2.1"
resolved "https://registry.yarnpkg.com/clean-css/-/clean-css-4.2.1.tgz#2d411ef76b8569b6d0c84068dabe85b0aa5e5c17"
@@ -6009,36 +6034,34 @@ core-util-is@1.0.2, core-util-is@~1.0.0:
resolved "https://registry.yarnpkg.com/core-util-is/-/core-util-is-1.0.2.tgz#b5fd54220aa2bc5ab57aab7140c940754503c1a7"
integrity sha1-tf1UIgqivFq1eqtxQMlAdUUDwac=
cornerstone-core@^2.2.8:
version "2.3.0"
resolved "https://registry.yarnpkg.com/cornerstone-core/-/cornerstone-core-2.3.0.tgz#b16430b0dc3883c795fbbd5f64d0f6357f91c889"
integrity sha512-1LiCfRIlQvR1j8OhF7/3pvvQvvnTYZUywEkuoEo5K5mMrlKdrQMS75uW1uXb/nXShQDJyyjtTCQSVGgv2yHA+w==
cornerstone-core@^2.5.0:
version "2.5.0"
resolved "https://registry.yarnpkg.com/cornerstone-core/-/cornerstone-core-2.5.0.tgz#1051ffc34420ad7484e61d2f3bdbc41a5ebc1956"
integrity sha512-mJzvRJh8J7d5FJutjaL9cT8ZNnmj6l5PHROsyktZq1ojh4vkXfHECQ2izIQu8nmtJ9A6SyQRj4v5Uxn7hijzKw==
cornerstone-math@0.1.7:
version "0.1.7"
resolved "https://registry.yarnpkg.com/cornerstone-math/-/cornerstone-math-0.1.7.tgz#7c55536f02e7221b05fc49a4c780bb82c234ce39"
integrity sha512-svsDSoqLNFM9niCV2AtV2DNmRkYztT1v80lVdbA5hkgdGdpWg5/h2On794zbqBK+aI3hNOHufERDsI4wdXGknA==
cornerstone-math@0.1.9, cornerstone-math@^0.1.9:
version "0.1.9"
resolved "https://registry.yarnpkg.com/cornerstone-math/-/cornerstone-math-0.1.9.tgz#7ce5509e8b9f465b01f7c548470725e7569859fc"
integrity sha512-NxdooV73asEQgav1S+0e+a4K+W3CXJdLXyFkVN24qqCtmIpzZzwtw3F9KWPCekzSAJmbhtQ3HicOQj3d4vRtuw==
cornerstone-math@^0.1.8:
version "0.1.8"
resolved "https://registry.yarnpkg.com/cornerstone-math/-/cornerstone-math-0.1.8.tgz#68ab1f9e4fdcd7c5cb23a0d2eb4263f9f894f1c5"
integrity sha512-x7NEQHBtVG7j1yeyj/aRoKTpXv1Vh2/H9zNLMyqYJDtJkNng8C4Q8M3CgZ1qer0Yr7eVq2x+Ynmj6kfOm5jXKw==
cornerstone-tools@^4.20.1:
version "4.20.1"
resolved "https://registry.yarnpkg.com/cornerstone-tools/-/cornerstone-tools-4.20.1.tgz#90f6c28356622eac037683b19f9175f85d33dff7"
integrity sha512-SyQsrg3bnGHUvWGZpUq7ia7/gj12S9zQFK2VMhpyAYxK9pWz+PRv8HBi0eEe/fWGAo/Vc62IRkdP3uF9MJlqiQ==
cornerstone-tools@^6.0.0:
version "6.0.0"
resolved "https://registry.yarnpkg.com/cornerstone-tools/-/cornerstone-tools-6.0.0.tgz#6840658f4508e60cd206b17d6e56160367f616f1"
integrity sha512-VU4MrsO2NcQK6CUxuYFdiNvdWjF/NV/fs8jCePazYCoFDDKIYcUM9UmoYXAapFE2mon65p4u9wUAvuIuLeBQwA==
dependencies:
"@babel/runtime" "7.1.2"
cornerstone-math "0.1.7"
cornerstone-math "0.1.9"
cornerstone-wado-image-loader@^3.1.0:
version "3.1.0"
resolved "https://registry.yarnpkg.com/cornerstone-wado-image-loader/-/cornerstone-wado-image-loader-3.1.0.tgz#6007470be896678636da3188f194f5e66ed07858"
integrity sha512-n2yadbwK7rCHqJyh5AUmYVPUY5m7boKpheK60sXV41Z0eSZLin9Ja+P9yeAvkg0VGV+/zaBZGPUGY3YyjdWBgg==
cornerstone-wado-image-loader@^4.0.3:
version "4.0.3"
resolved "https://registry.yarnpkg.com/cornerstone-wado-image-loader/-/cornerstone-wado-image-loader-4.0.3.tgz#4848a238af9b10742af6d08e204527acf5260c25"
integrity sha512-0KuMC6+hEFsCwVOBH4idKwPpbLdccPzP7i5Ja4q7E/kfwCE71uL8AzHhx96XcLeFN8oR8T+nzv8X6j0lyY32SA==
dependencies:
dicom-parser "^1.8.3"
pako "^1.0.10"
"@cornerstonejs/codec-charls" "^0.1.1"
"@cornerstonejs/codec-libjpeg-turbo-8bit" "^0.0.7"
"@cornerstonejs/codec-openjpeg" "^0.1.0"
dicom-parser "^1.8.9"
pako "^2.0.4"
cors@^2.8.4:
version "2.8.5"
@@ -6609,6 +6632,11 @@ date-fns@^2.2.1:
resolved "https://registry.yarnpkg.com/date-fns/-/date-fns-2.6.0.tgz#a5bc82e6a4c3995ae124b0ba1a71aec7b8cbd666"
integrity sha512-F55YxqRdEfP/eYQmQjLN798v0AwLjmZ8nMBjdQvNwEE3N/zWVrlkkqT+9seBlPlsbkybG4JmWg3Ee3dIV9BcGQ==
date-fns@^2.23.0:
version "2.23.0"
resolved "https://registry.yarnpkg.com/date-fns/-/date-fns-2.23.0.tgz#4e886c941659af0cf7b30fafdd1eaa37e88788a9"
integrity sha512-5ycpauovVyAk0kXNZz6ZoB9AYMZB4DObse7P3BPWmyEjXNORTI8EJ6X0uaSAq4sCHzM1uajzrkr6HnsLQpxGXA==
date-now@^0.1.4:
version "0.1.4"
resolved "https://registry.yarnpkg.com/date-now/-/date-now-0.1.4.tgz#eaf439fd4d4848ad74e5cc7dbef200672b9e345b"
@@ -6619,10 +6647,10 @@ dateformat@^3.0.0:
resolved "https://registry.yarnpkg.com/dateformat/-/dateformat-3.0.3.tgz#a6e37499a4d9a9cf85ef5872044d62901c9889ae"
integrity sha512-jyCETtSl3VMZMWeRo7iY1FL19ges1t55hMo5yaam4Jrsm5EPL89UQkoQRyiI+Yf4k8r2ZpdngkV8hr1lIdjb3Q==
dcmjs@0.18.8:
version "0.18.8"
resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.18.8.tgz#fc8e6af03ace9050da49f4108334aa3d0a3bdf3d"
integrity sha512-Z3nNEmzkWdpHQPgjozGqk8XcuhP/hXP1C64Wtg9V+VO9eEc8eNFJFJ6If62f1cuOh0FaRwHqxBT7OzhOAUpFTA==
dcmjs@0.18.9:
version "0.18.9"
resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.18.9.tgz#0e18fcff975aaae8ca01a96e781fa75c29ec97f3"
integrity sha512-aTu4fUo3TSgohJC+U509qdXL1per09XvlYdQva0BGtIZMr/iR5n8h/ojpcDTRJoVtSuaj331KJj1yCj8FMMK4Q==
dependencies:
"@babel/polyfill" "^7.8.3"
"@babel/runtime" "^7.8.4"
@@ -6935,10 +6963,10 @@ dicom-microscopy-viewer@^0.6.1:
dicomweb-client "^0.5.2"
ol "^5.3.0"
dicom-parser@^1.8.3:
version "1.8.3"
resolved "https://registry.yarnpkg.com/dicom-parser/-/dicom-parser-1.8.3.tgz#6e4b862898112304db30143147562011c1ce6a4d"
integrity sha512-CMeUr+jea7Ml70N+/Z5Pd2MYtvLp6IU+TnvdLe6VRVKzZuTeYLYyuAQa9R+sFK4v4N39hig+hKHN+Wfi9sQ6GA==
dicom-parser@^1.8.9:
version "1.8.9"
resolved "https://registry.yarnpkg.com/dicom-parser/-/dicom-parser-1.8.9.tgz#c69b036b8234df1cfad9978d0d6f0caad1582e74"
integrity sha512-OdLBIh460sy0aVeBZ/XSjbzEvXDS18XWxTdTinYmIHNi2jZfo6UuxscX4/VuYslduQ9LaeY6sdEXe9P9e6qlvA==
dicomweb-client@^0.5.2:
version "0.5.2"
@@ -14060,7 +14088,12 @@ pako@1.0.6:
resolved "https://registry.yarnpkg.com/pako/-/pako-1.0.6.tgz#0101211baa70c4bca4a0f63f2206e97b7dfaf258"
integrity sha512-lQe48YPsMJAig+yngZ87Lus+NF+3mtu7DVOBu6b/gHO1YpKwIj5AWjZ/TOS7i46HD/UixzWb1zeWDZfGZ3iYcg==
pako@^1.0.10, pako@~1.0.2, pako@~1.0.5:
pako@^2.0.4:
version "2.0.4"
resolved "https://registry.yarnpkg.com/pako/-/pako-2.0.4.tgz#6cebc4bbb0b6c73b0d5b8d7e8476e2b2fbea576d"
integrity sha512-v8tweI900AUkZN6heMU/4Uy4cXRc2AYNRggVmTR+dEncawDJgCdLMximOVA2p4qO57WMynangsfGRb5WD6L1Bg==
pako@~1.0.2, pako@~1.0.5:
version "1.0.10"
resolved "https://registry.yarnpkg.com/pako/-/pako-1.0.10.tgz#4328badb5086a426aa90f541977d4955da5c9732"
integrity sha512-0DTvPVU3ed8+HNXOu5Bs+o//Mbdj9VNQMUOe9oKCwh8l0GNwpTDMKCWbRjgtD291AWnkAgkqA/LOnQS8AmS1tw==
@@ -15693,16 +15726,16 @@ react-codemirror2@^6.0.0:
resolved "https://registry.yarnpkg.com/react-codemirror2/-/react-codemirror2-6.0.0.tgz#180065df57a64026026cde569a9708fdf7656525"
integrity sha512-D7y9qZ05FbUh9blqECaJMdDwKluQiO3A9xB+fssd5jKM7YAXucRuEOlX32mJQumUvHUkHRHqXIPBjm6g0FW0Ag==
react-cornerstone-viewport@4.0.5:
version "4.0.5"
resolved "https://registry.yarnpkg.com/react-cornerstone-viewport/-/react-cornerstone-viewport-4.0.5.tgz#3de83cdd3643980e0330f3743f631dbbb24d98a7"
integrity sha512-uamDtFljWWEHe26kOBJJ1Bu//6hAgEra7BDVykOvtMC/W7kW34Q2fFX3ZwkL6TDdCQ94O6K98IXPS9HbrEJWYg==
react-cornerstone-viewport@4.1.1:
version "4.1.1"
resolved "https://registry.yarnpkg.com/react-cornerstone-viewport/-/react-cornerstone-viewport-4.1.1.tgz#713536c031b1e1d0d9f58ad80ee34f15998e5759"
integrity sha512-cJ3D7WglieGxcR49hivORk1YnSCQFbj8HVNj7JFaddix8jMqIkBpmbN5En5+8yM3ujgdj1n66uaLWNoP7JE9Qw==
dependencies:
classnames "^2.2.6"
date-fns "^2.2.1"
classnames "^2.3.1"
date-fns "^2.23.0"
lodash.debounce "^4.0.8"
prop-types "^15.7.2"
react-resize-detector "^4.2.1"
react-resize-detector "^6.7.6"
react-dates@21.2.1:
version "21.2.1"
@@ -16053,7 +16086,7 @@ react-redux@^7.1.0:
prop-types "^15.7.2"
react-is "^16.9.0"
react-resize-detector@^4.2.0, react-resize-detector@^4.2.1:
react-resize-detector@^4.2.0:
version "4.2.1"
resolved "https://registry.yarnpkg.com/react-resize-detector/-/react-resize-detector-4.2.1.tgz#8982b74c3e1cf949afaa3c41050458c87b033982"
integrity sha512-ZfPMBPxXi0o3xox42MIEtz84tPSVMW9GgwLHYvjVXlFM+OkNzbeEtpVSV+mSTJmk4Znwomolzt35zHN9LNBQMQ==
@@ -16064,6 +16097,16 @@ react-resize-detector@^4.2.0, react-resize-detector@^4.2.1:
raf-schd "^4.0.2"
resize-observer-polyfill "^1.5.1"
react-resize-detector@^6.7.6:
version "6.7.6"
resolved "https://registry.yarnpkg.com/react-resize-detector/-/react-resize-detector-6.7.6.tgz#4416994e5ead7eba76606e3a248a1dfca49b67a3"
integrity sha512-/6RZlul1yePSoYJxWxmmgjO320moeLC/khrwpEVIL+D2EjLKhqOwzFv+H8laMbImVj7Zu4FlMa0oA7au3/ChjQ==
dependencies:
"@types/resize-observer-browser" "^0.1.6"
lodash.debounce "^4.0.8"
lodash.throttle "^4.1.1"
resize-observer-polyfill "^1.5.1"
react-router-dom@^5.0.1:
version "5.1.2"
resolved "https://registry.yarnpkg.com/react-router-dom/-/react-router-dom-5.1.2.tgz#06701b834352f44d37fbb6311f870f84c76b9c18"
@@ -16152,10 +16195,10 @@ react-transition-group@^4.1.1:
loose-envify "^1.4.0"
prop-types "^15.6.2"
react-vtkjs-viewport@^0.14.2:
version "0.14.2"
resolved "https://registry.yarnpkg.com/react-vtkjs-viewport/-/react-vtkjs-viewport-0.14.2.tgz#8b3363e4fc0b2084e72d59b3bb6246c27b08b6a4"
integrity sha512-sIUU2Om0O4mby9tubjeVRPCNDGSKh2OM7tgpd+wxxjvAqOGRIab51jL+mZTP4ijTMRzZ8Gvl6c4ywOuXnH4RJA==
react-vtkjs-viewport@^0.14.4:
version "0.14.4"
resolved "https://registry.yarnpkg.com/react-vtkjs-viewport/-/react-vtkjs-viewport-0.14.4.tgz#8cc5a49738fff3fee75ead61c98307bc24710151"
integrity sha512-WKU87iqH6AQ1R8zp1hUXU4hsGwfbkkoUhzSCjbBGZ9Di0ELYNx/xY9DtdmgsKOU5Y5Arp5+VQW/ziFsq2KTcTA==
dependencies:
date-fns "^2.2.1"
gl-matrix "^3.1.0"