chore(release): publish [skip ci]

- @ohif/extension-dicom-rt@0.3.0
 - @ohif/viewer@4.3.1

extensions/dicom-rt/CHANGELOG.md

@@ -3,6 +3,25 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [0.3.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.7...@ohif/extension-dicom-rt@0.3.0) (2020-08-10)
+
+
+### Features
+
+* 🎸 Add support for POINT and OPEN_PLANAR for RT ([0e87ab3](https://github.com/OHIF/Viewers/commit/0e87ab37c29fcf9af74bbcefca854c6e6b8707bc))
+
+
+
+
+
+## [0.2.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.6...@ohif/extension-dicom-rt@0.2.7) (2020-08-10)
+
+**Note:** Version bump only for package @ohif/extension-dicom-rt
+
+
+
+
+
 ## [0.2.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.5...@ohif/extension-dicom-rt@0.2.6) (2020-08-05)
 
 **Note:** Version bump only for package @ohif/extension-dicom-rt

extensions/dicom-rt/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-rt",
-  "version": "0.2.6",
+  "version": "0.3.0",
   "description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
   "author": "OHIF",
   "license": "MIT",

extensions/dicom-rt/src/OHIFDicomRTStructSopClassHandler.js

@@ -1,5 +1,6 @@
 import { MODULE_TYPES, utils, DICOMWeb } from '@ohif/core';
 import loadRTStruct from './loadRTStruct';
+import getSourceDisplaySet from './getSourceDisplaySet';
 
 import id from './id';
 
@@ -67,6 +68,10 @@ const OHIFDicomRTStructSopClassHandler = {
       }
     }
 
+    rtStructDisplaySet.getSourceDisplaySet = function(studies) {
+      return getSourceDisplaySet(studies, rtStructDisplaySet);
+    };
+
     rtStructDisplaySet.load = function(referencedDisplaySet, studies) {
       return loadRTStruct(
         rtStructDisplaySet,

extensions/dicom-rt/src/components/RTPanel/RTPanel.js

@@ -242,7 +242,7 @@ const RTPanel = ({
               key={SeriesInstanceUID}
               title={metadata.StructureSetLabel}
               loading={!isLoaded || !loadedSet}
-              visible={isLoaded && loadedSet.visible}
+              visible={isLoaded && loadedSet && loadedSet.visible}
               hideVisibleButton={!isLoaded}
               expanded={
                 isLoaded &&

extensions/dicom-rt/src/getSourceDisplaySet.js

@@ -0,0 +1,38 @@
+export default function getSourceDisplaySet(studies, rtStructDisplaySet) {
+  const referencedDisplaySet = _getReferencedDisplaySet(
+    rtStructDisplaySet,
+    studies
+  );
+
+  rtStructDisplaySet.load(referencedDisplaySet, studies);
+
+  return referencedDisplaySet;
+}
+
+const _getReferencedDisplaySet = (rtStructDisplaySet, studies) => {
+  let allDisplaySets = [];
+
+  studies.forEach(study => {
+    allDisplaySets = allDisplaySets.concat(study.displaySets);
+  });
+
+  const otherDisplaySets = allDisplaySets.filter(
+    ds => ds.displaySetInstanceUID !== rtStructDisplaySet.displaySetInstanceUID
+  );
+
+  const ReferencedSeriesSequence = Array.isArray(
+    rtStructDisplaySet.metadata.ReferencedSeriesSequence
+  )
+    ? rtStructDisplaySet.metadata.ReferencedSeriesSequence
+    : [rtStructDisplaySet.metadata.ReferencedSeriesSequence];
+
+  const referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
+    ReferencedSeries => ReferencedSeries.SeriesInstanceUID
+  );
+
+  const referencedDisplaySet = otherDisplaySets.find(ds =>
+    referencedSeriesInstanceUIDs.includes(ds.SeriesInstanceUID)
+  );
+
+  return referencedDisplaySet;
+};

extensions/dicom-rt/src/loadRTStruct.js

@@ -76,21 +76,15 @@ export default async function loadRTStruct(
 
     const isSupported = false;
 
-    for (let c = 0; c < ContourSequence.length; c++) {
+    const ContourSequenceArray = _toArray(ContourSequence);
+
+    for (let c = 0; c < ContourSequenceArray.length; c++) {
       const {
         ContourImageSequence,
         ContourData,
         NumberOfContourPoints,
         ContourGeometricType,
-      } = ContourSequence[c];
-
-      if (ContourGeometricType !== 'CLOSED_PLANAR') {
-        // TODO: Do we want to visualise types other than closed planar?
-        // We could easily do open planar and point.
-        continue;
-      }
-
-      isSupported = true;
+      } = ContourSequenceArray[c];
 
       const sopInstanceUID = ContourImageSequence.ReferencedSOPInstanceUID;
       const imageId = _getImageId(imageIdSopInstanceUidPairs, sopInstanceUID);
@@ -102,26 +96,38 @@ export default async function loadRTStruct(
 
       const imagePlane = cornerstone.metaData.get('imagePlaneModule', imageId);
       const points = [];
+      let measurementData;
 
-      for (let p = 0; p < NumberOfContourPoints * 3; p += 3) {
-        points.push({
-          x: ContourData[p],
-          y: ContourData[p + 1],
-          z: ContourData[p + 2],
-        });
+      switch (ContourGeometricType) {
+        case 'CLOSED_PLANAR':
+        case 'OPEN_PLANAR':
+        case 'POINT':
+          isSupported = true;
+
+          for (let p = 0; p < NumberOfContourPoints * 3; p += 3) {
+            points.push({
+              x: ContourData[p],
+              y: ContourData[p + 1],
+              z: ContourData[p + 2],
+            });
+          }
+
+          transformPointsToImagePlane(points, imagePlane);
+
+          measurementData = {
+            handles: {
+              points,
+            },
+            type: ContourGeometricType,
+            structureSetSeriesInstanceUid: rtStructDataset.SeriesInstanceUID,
+            ROINumber: ReferencedROINumber,
+          };
+
+          imageIdSpecificToolData.push(measurementData);
+          break;
+        default:
+          continue;
       }
-
-      transformPointsToImagePlane(points, imagePlane);
-
-      const measurementData = {
-        handles: {
-          points,
-        },
-        structureSetSeriesInstanceUid: rtStructDataset.SeriesInstanceUID,
-        ROINumber: ReferencedROINumber,
-      };
-
-      imageIdSpecificToolData.push(measurementData);
     }
 
     _setROIContourMetadata(
@@ -314,3 +320,7 @@ function _getImageIdSopInstanceUidPairsForDisplaySet(
     };
   });
 }
+
+function _toArray(objOrArray) {
+  return Array.isArray(objOrArray) ? objOrArray : [objOrArray];
+}

extensions/dicom-rt/src/tools/RTStructDisplayTool.js

@@ -4,6 +4,7 @@ import TOOL_NAMES from '../utils/toolNames';
 
 // Cornerstone 3rd party dev kit imports
 const draw = importInternal('drawing/draw');
+const drawCircle = importInternal('drawing/drawCircle');
 const drawJoinedLines = importInternal('drawing/drawJoinedLines');
 const getNewContext = importInternal('drawing/getNewContext');
 const BaseTool = importInternal('base/BaseTool');
@@ -72,22 +73,52 @@ export default class RTStructDisplayTool extends BaseTool {
       const colorArray = ROIContourData.colorArray;
       const color = `rgba(${colorArray[0]},${colorArray[1]},${
         colorArray[2]
-        },${opacity})`;
+      },${opacity})`;
 
-      lineWidth;
-
-      draw(context, context => {
-        drawJoinedLines(
-          context,
-          eventData.element,
-          points[points.length - 1],
-          points,
-          {
+      switch (data.type) {
+        case 'CLOSED_PLANAR':
+          this._renderClosedPlanar(context, eventData.element, points, {
             color,
             lineWidth,
-          }
-        );
-      });
+          });
+          break;
+        case 'POINT':
+          this._renderPoint(context, eventData.element, points, {
+            color,
+            lineWidth,
+          });
+          break;
+        case 'OPEN_PLANAR':
+          this._renderOpenPlanar(context, eventData.element, points, {
+            color,
+            lineWidth,
+          });
+          break;
+      }
     }
   }
+
+  _renderClosedPlanar(context, element, points, options) {
+    draw(context, context => {
+      drawJoinedLines(
+        context,
+        element,
+        points[points.length - 1],
+        points,
+        options
+      );
+    });
+  }
+
+  _renderPoint(context, element, points, options) {
+    draw(context, context => {
+      drawCircle(context, element, points[0], 3, options);
+    });
+  }
+
+  _renderOpenPlanar(context, element, points, options) {
+    draw(context, context => {
+      drawJoinedLines(context, element, points[0], points, options);
+    });
+  }
 }

extensions/dicom-segmentation/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.3.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.3.3...@ohif/extension-dicom-segmentation@0.3.4) (2020-08-10)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
 ## [0.3.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.3.2...@ohif/extension-dicom-segmentation@0.3.3) (2020-07-13)
 
 **Note:** Version bump only for package @ohif/extension-dicom-segmentation

extensions/dicom-segmentation/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-segmentation",
-  "version": "0.3.3",
+  "version": "0.3.4",
   "description": "OHIF extension for viewing segmentations in the 2D MPR view",
   "author": "OHIF",
   "license": "MIT",

extensions/dicom-segmentation/src/components/SegmentationPanel/SegmentationPanel.js

@@ -6,6 +6,9 @@ import moment from 'moment';
 import { utils, log } from '@ohif/core';
 import { ScrollableArea, TableList, Icon } from '@ohif/ui';
 
+import setActiveLabelmap from '../../utils/setActiveLabelMap';
+import refreshViewports from '../../utils/refreshViewports';
+
 import {
   BrushColorSelector,
   BrushRadius,
@@ -19,12 +22,6 @@ import SegmentationSettings from '../SegmentationSettings/SegmentationSettings';
 
 const { studyMetadataManager } = utils;
 
-const refreshViewport = () => {
-  cornerstone.getEnabledElements().forEach(enabledElement => {
-    cornerstone.updateImage(enabledElement.element);
-  });
-};
-
 /**
  * SegmentationPanel component
  *
@@ -68,8 +65,7 @@ const SegmentationPanel = ({
    */
   const [state, setState] = useState({
     brushRadius: DEFAULT_BRUSH_RADIUS,
-    brushColor:
-      'rgba(221, 85, 85, 1)',
+    brushColor: 'rgba(221, 85, 85, 1)',
     selectedSegment: null,
     selectedSegmentation: null,
     showSegmentationSettings: false,
@@ -78,7 +74,7 @@ const SegmentationPanel = ({
     segmentList: [],
     cachedSegmentsProperties: [],
     isLoading: false,
-    isDisabled: true
+    isDisabled: true,
   });
 
   useEffect(() => {
@@ -112,7 +108,10 @@ const SegmentationPanel = ({
      * allows us to easily watch the module or the segmentations loading process in any other component
      * without subscribing to external events.
      */
-    document.addEventListener('extensiondicomsegmentationsegloaded', refreshSegmentations);
+    document.addEventListener(
+      'extensiondicomsegmentationsegloaded',
+      refreshSegmentations
+    );
 
     /*
      * These are specific to each element;
@@ -127,7 +126,10 @@ const SegmentationPanel = ({
     );
 
     return () => {
-      document.removeEventListener('extensiondicomsegmentationsegloaded', refreshSegmentations);
+      document.removeEventListener(
+        'extensiondicomsegmentationsegloaded',
+        refreshSegmentations
+      );
       cornerstoneTools.store.state.enabledElements.forEach(enabledElement =>
         enabledElement.removeEventListener(
           'cornerstonetoolslabelmapmodified',
@@ -169,26 +171,29 @@ const SegmentationPanel = ({
           selectedSegmentation: brushStackState.activeLabelmapIndex,
           labelmapList,
           segmentList,
-          isDisabled
+          isDisabled,
         }));
       } else {
         setState(state => ({
           ...state,
           labelmapList: [],
           segmentList: [],
-          isDisabled
+          isDisabled,
         }));
       }
     }
-  }, [
-    viewports,
-    activeIndex,
-    state.isLoading
-  ]);
+  }, [viewports, activeIndex, state.isLoading]);
 
   useEffect(() => {
     refreshSegmentations();
-  }, [viewports, activeIndex, isOpen, state.selectedSegmentation, activeContexts, state.isLoading]);
+  }, [
+    viewports,
+    activeIndex,
+    isOpen,
+    state.selectedSegmentation,
+    activeContexts,
+    state.isLoading,
+  ]);
 
   /* Handle open/closed panel behaviour */
   useEffect(() => {
@@ -223,12 +228,10 @@ const SegmentationPanel = ({
           title: displayDescription,
           description: displayDate,
           onClick: async () => {
-            const activatedLabelmapIndex = await _setActiveLabelmap(
+            const activatedLabelmapIndex = await setActiveLabelmap(
               activeViewport,
               studies,
               displaySet,
-              firstImageId,
-              brushStackState.activeLabelmapIndex,
               () => onSelectedSegmentationChange(),
               onDisplaySetLoadFailure
             );
@@ -376,9 +379,13 @@ const SegmentationPanel = ({
           return !segmentsHidden[segmentIndex];
         };
 
-        const cachedSegmentProperties = state.cachedSegmentsProperties[segmentNumber];
+        const cachedSegmentProperties =
+          state.cachedSegmentsProperties[segmentNumber];
         let visible = isSegmentVisible();
-        if (cachedSegmentProperties && cachedSegmentProperties.visible !== visible) {
+        if (
+          cachedSegmentProperties &&
+          cachedSegmentProperties.visible !== visible
+        ) {
           toggleSegmentVisibility();
         }
 
@@ -406,8 +413,10 @@ const SegmentationPanel = ({
                 onSegmentVisibilityChange(segmentNumber, newVisibility);
               }
 
-              updateCachedSegmentsProperties(segmentNumber, { visible: newVisibility });
-              refreshViewport();
+              updateCachedSegmentsProperties(segmentNumber, {
+                visible: newVisibility,
+              });
+              refreshViewports();
             }}
           />
         );
@@ -429,10 +438,9 @@ const SegmentationPanel = ({
     const segmentsProperties = state.cachedSegmentsProperties;
     const segmentProperties = state.cachedSegmentsProperties[segmentNumber];
 
-    segmentsProperties[segmentNumber] =
-      segmentProperties ?
-        { ...segmentProperties, ...properties } :
-        properties;
+    segmentsProperties[segmentNumber] = segmentProperties
+      ? { ...segmentProperties, ...properties }
+      : properties;
 
     updateState('cachedSegmentsProperties', segmentsProperties);
   };
@@ -499,10 +507,13 @@ const SegmentationPanel = ({
     configuration.fillAlphaInactive = newConfiguration.fillAlphaInactive;
     configuration.outlineAlphaInactive = newConfiguration.outlineAlphaInactive;
     onConfigurationChange(newConfiguration);
-    refreshViewport();
+    refreshViewports();
   };
 
-  const disabledConfigurationFields = ['outlineAlpha', 'shouldRenderInactiveLabelmaps'];
+  const disabledConfigurationFields = [
+    'outlineAlpha',
+    'shouldRenderInactiveLabelmaps',
+  ];
   if (state.showSegmentationSettings) {
     return (
       <SegmentationSettings
@@ -514,7 +525,10 @@ const SegmentationPanel = ({
     );
   } else {
     return (
-      <div className={`dcmseg-segmentation-panel ${state.isDisabled && 'disabled'}`}>
+      <div
+        className={`dcmseg-segmentation-panel ${state.isDisabled &&
+          'disabled'}`}
+      >
         <Icon
           className="cog-icon"
           name="cog"
@@ -613,57 +627,6 @@ const _getReferencedSegDisplaysets = (StudyInstanceUID, SeriesInstanceUID) => {
   return referencedDisplaysets;
 };
 
-/**
- *
- *
- * @param {*} viewportSpecificData
- * @param {*} studies
- * @param {*} displaySet
- * @param {*} firstImageId
- * @param {*} activeLabelmapIndex
- * @returns
- */
-const _setActiveLabelmap = async (
-  viewportSpecificData,
-  studies,
-  displaySet,
-  firstImageId,
-  activeLabelmapIndex,
-  callback = () => { },
-  onDisplaySetLoadFailure
-) => {
-  if (displaySet.labelmapIndex === activeLabelmapIndex) {
-    log.warn(`${activeLabelmapIndex} is already the active labelmap`);
-    return displaySet.labelmapIndex;
-  }
-
-  if (!displaySet.isLoaded) {
-    // What props does this expect `viewportSpecificData` to have?
-    // TODO: Should this return the `labelmapIndex`?
-
-    const loadPromise = displaySet.load(viewportSpecificData, studies);
-
-    loadPromise.catch(error => {
-      onDisplaySetLoadFailure(error);
-
-      // Return old index.
-      return activeLabelmapIndex;
-    });
-
-    await loadPromise;
-  }
-
-  const { state } = cornerstoneTools.getModule('segmentation');
-  const brushStackState = state.series[firstImageId];
-  brushStackState.activeLabelmapIndex = displaySet.labelmapIndex;
-
-  refreshViewport();
-
-  callback();
-
-  return displaySet.labelmapIndex;
-};
-
 /**
  *
  * @param {*} firstImageId
@@ -683,7 +646,7 @@ const _setActiveSegment = (firstImageId, segmentIndex, activeSegmentIndex) => {
     brushStackState.labelmaps3D[brushStackState.activeLabelmapIndex];
   labelmap3D.activeSegmentIndex = segmentIndex;
 
-  refreshViewport();
+  refreshViewports();
 
   return segmentIndex;
 };

extensions/dicom-segmentation/src/getOHIFDicomSegSopClassHandler.js

@@ -1,5 +1,6 @@
 import { MODULE_TYPES, utils } from '@ohif/core';
 import loadSegmentation from './loadSegmentation';
+import getSourceDisplaySet from './getSourceDisplaySet';
 
 // TODO: Should probably use dcmjs for this
 const SOP_CLASS_UIDS = {
@@ -54,6 +55,10 @@ export default function getSopClassHandlerModule({ servicesManager }) {
         SeriesDescription,
       };
 
+      segDisplaySet.getSourceDisplaySet = function(studies) {
+        return getSourceDisplaySet(studies, segDisplaySet);
+      };
+
       segDisplaySet.load = function(referencedDisplaySet, studies) {
         return loadSegmentation(segDisplaySet, referencedDisplaySet, studies);
       };

extensions/dicom-segmentation/src/getSourceDisplaySet.js

@@ -0,0 +1,37 @@
+import setActiveLabelmap from './utils/setActiveLabelMap';
+
+export default function getSourceDisplaySet(studies, segDisplaySet) {
+  const referencedDisplaySet = _getReferencedDisplaySet(segDisplaySet, studies);
+
+  setActiveLabelmap(referencedDisplaySet, studies, segDisplaySet);
+
+  return referencedDisplaySet;
+}
+
+const _getReferencedDisplaySet = (segDisplaySet, studies) => {
+  let allDisplaySets = [];
+
+  studies.forEach(study => {
+    allDisplaySets = allDisplaySets.concat(study.displaySets);
+  });
+
+  const otherDisplaySets = allDisplaySets.filter(
+    ds => ds.displaySetInstanceUID !== segDisplaySet.displaySetInstanceUID
+  );
+
+  const ReferencedSeriesSequence = Array.isArray(
+    segDisplaySet.metadata.ReferencedSeriesSequence
+  )
+    ? segDisplaySet.metadata.ReferencedSeriesSequence
+    : [segDisplaySet.metadata.ReferencedSeriesSequence];
+
+  const referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
+    ReferencedSeries => ReferencedSeries.SeriesInstanceUID
+  );
+
+  const referencedDisplaySet = otherDisplaySets.find(ds =>
+    referencedSeriesInstanceUIDs.includes(ds.SeriesInstanceUID)
+  );
+
+  return referencedDisplaySet;
+};

extensions/dicom-segmentation/src/utils/refreshViewports.js

@@ -0,0 +1,5 @@
+export default function refreshViewports() {
+  cornerstone.getEnabledElements().forEach(enabledElement => {
+    cornerstone.updateImage(enabledElement.element);
+  });
+}

extensions/dicom-segmentation/src/utils/setActiveLabelMap.js

@@ -0,0 +1,67 @@
+import { utils, log } from '@ohif/core';
+import cornerstoneTools from 'cornerstone-tools';
+import refreshViewports from './refreshViewports';
+
+const { studyMetadataManager } = utils;
+
+/**
+ *
+ *
+ * @param {*} viewportSpecificData
+ * @param {*} studies
+ * @param {*} displaySet
+ * @param {*} firstImageId
+ * @param {*} activeLabelmapIndex
+ * @returns
+ */
+export default async function setActiveLabelmap(
+  referencedDisplaySet,
+  studies,
+  displaySet,
+  callback = () => {},
+  onDisplaySetLoadFailure = err => {
+    throw new Error(err.message);
+  }
+) {
+  const studyMetadata = studyMetadataManager.get(
+    referencedDisplaySet.StudyInstanceUID
+  );
+  const firstImageId = studyMetadata.getFirstImageId(
+    referencedDisplaySet.displaySetInstanceUID
+  );
+
+  let { state } = cornerstoneTools.getModule('segmentation');
+
+  let brushStackState = state.series[firstImageId];
+  const activeLabelmapIndex = brushStackState
+    ? brushStackState.activeLabelmapIndex
+    : undefined;
+
+  if (displaySet.labelmapIndex === activeLabelmapIndex) {
+    log.warn(`${activeLabelmapIndex} is already the active labelmap`);
+    return displaySet.labelmapIndex;
+  }
+
+  if (!displaySet.isLoaded) {
+    const loadPromise = displaySet.load(referencedDisplaySet, studies);
+
+    loadPromise.catch(error => {
+      onDisplaySetLoadFailure(error);
+
+      // Return old index.
+      return activeLabelmapIndex;
+    });
+
+    await loadPromise;
+  }
+
+  // This might have just been created, so need to use the non-cached value.
+  state = cornerstoneTools.getModule('segmentation').state;
+  brushStackState = state.series[firstImageId];
+  brushStackState.activeLabelmapIndex = displaySet.labelmapIndex;
+
+  refreshViewports();
+  callback();
+
+  return displaySet.labelmapIndex;
+}

extensions/vtk/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.6.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.9...@ohif/extension-vtk@1.6.10) (2020-08-10)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
 ## [1.6.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.8...@ohif/extension-vtk@1.6.9) (2020-07-23)
 
 **Note:** Version bump only for package @ohif/extension-vtk

extensions/vtk/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-vtk",
-  "version": "1.6.9",
+  "version": "1.6.10",
   "description": "OHIF extension for VTK.js",
   "author": "OHIF",
   "license": "MIT",
@@ -53,7 +53,7 @@
     "react-vtkjs-viewport": "^0.9.0"
   },
   "devDependencies": {
-    "@ohif/core": "^2.9.13",
+    "@ohif/core": "^2.9.14",
     "@ohif/ui": "^1.5.3",
     "cornerstone-tools": "4.15.1",
     "cornerstone-wado-image-loader": "^3.1.0",

platform/core/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [2.9.14](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.13...@ohif/core@2.9.14) (2020-08-10)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
 ## [2.9.13](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.12...@ohif/core@2.9.13) (2020-07-22)
 
 

platform/core/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/core",
-  "version": "2.9.13",
+  "version": "2.9.14",
   "description": "Generic business logic for web-based medical imaging applications",
   "author": "OHIF Core Team",
   "license": "MIT",

platform/core/src/classes/metadata/StudyMetadata.js

@@ -139,9 +139,11 @@ export class StudyMetadata extends Metadata {
       if (displaySet) {
         displaySet.sopClassModule = true;
 
-        displaySet.isDerived
-          ? this._addDerivedDisplaySet(displaySet)
-          : displaySets.push(displaySet);
+        if (displaySet.isDerived) {
+          this._addDerivedDisplaySet(displaySet);
+        }
+
+        displaySets.push(displaySet);
 
         return displaySets;
       }

platform/viewer/CHANGELOG.md

@@ -3,6 +3,33 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [4.3.1](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.3.0...@ohif/viewer@4.3.1) (2020-08-10)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+# [4.3.0](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.16...@ohif/viewer@4.3.0) (2020-08-10)
+
+
+### Features
+
+* 🎸 Optional disable measurements panel in app config ([#1912](https://github.com/OHIF/Viewers/issues/1912)) ([3d86b5f](https://github.com/OHIF/Viewers/commit/3d86b5f876d6481bcc57de88a0ba1f974f4ee263)), closes [#1864](https://github.com/OHIF/Viewers/issues/1864)
+
+
+
+
+
+## [4.2.16](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.15...@ohif/viewer@4.2.16) (2020-08-10)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
 ## [4.2.15](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.14...@ohif/viewer@4.2.15) (2020-08-05)
 
 **Note:** Version bump only for package @ohif/viewer

platform/viewer/cypress/integration/pwa/OHIFExtensionMicroscopy.spec.js

@@ -12,6 +12,8 @@ describe('OHIF Microscopy Extension', () => {
   });
 
   it('drags and drop a SM thumbnail into viewport', () => {
+    // Waiting for series list to load all displaySets (lots of SRs, before defining which dom element to grab.)
+    cy.wait(3000);
     cy.get('[data-cy="thumbnail-list"]')
       .contains('SM')
       .drag('.viewport-drop-target');

platform/viewer/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/viewer",
-  "version": "4.2.15",
+  "version": "4.3.1",
   "description": "OHIF Viewer",
   "author": "OHIF Contributors",
   "license": "MIT",
@@ -48,16 +48,16 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",
-    "@ohif/core": "^2.9.13",
+    "@ohif/core": "^2.9.14",
     "@ohif/extension-cornerstone": "^2.8.5",
     "@ohif/extension-dicom-html": "^1.2.4",
     "@ohif/extension-dicom-microscopy": "^0.51.0",
     "@ohif/extension-dicom-p10-downloader": "^0.1.2",
     "@ohif/extension-dicom-pdf": "^1.0.3",
-    "@ohif/extension-dicom-rt": "^0.2.6",
-    "@ohif/extension-dicom-segmentation": "^0.3.3",
+    "@ohif/extension-dicom-rt": "^0.3.0",
+    "@ohif/extension-dicom-segmentation": "^0.3.4",
     "@ohif/extension-lesion-tracker": "^0.2.0",
-    "@ohif/extension-vtk": "^1.6.9",
+    "@ohif/extension-vtk": "^1.6.10",
     "@ohif/i18n": "^0.52.8",
     "@ohif/ui": "^1.5.3",
     "@tanem/react-nprogress": "^1.1.25",

platform/viewer/public/config/idc.js

@@ -2,6 +2,7 @@ window.config = function(props) {
   var servicesManager = props.servicesManager;
 
   return {
+    disableMeasurementPanel: true,
     routerBasename: '/',
     enableGoogleCloudAdapter: true,
     enableGoogleCloudAdapterUI: false,

platform/viewer/src/App.js

@@ -13,7 +13,7 @@ import {
   ModalProvider,
   DialogProvider,
   OHIFModal,
-  ErrorBoundary
+  ErrorBoundary,
 } from '@ohif/ui';
 
 import {
@@ -168,7 +168,7 @@ class App extends Component {
 
     if (this._userManager) {
       return (
-        <ErrorBoundary context='App'>
+        <ErrorBoundary context="App">
           <Provider store={store}>
             <AppProvider config={this._appConfig}>
               <I18nextProvider i18n={i18n}>
@@ -200,7 +200,7 @@ class App extends Component {
     }
 
     return (
-      <ErrorBoundary context='App'>
+      <ErrorBoundary context="App">
         <Provider store={store}>
           <AppProvider config={this._appConfig}>
             <I18nextProvider i18n={i18n}>
@@ -271,17 +271,21 @@ function _initExtensions(extensions, cornerstoneExtensionConfig, appConfig) {
     api: {
       contexts: CONTEXTS,
       hooks: {
-        useAppContext
-      }
-    }
+        useAppContext,
+      },
+    },
   });
 
   const requiredExtensions = [
     GenericViewerCommands,
     [OHIFCornerstoneExtension, cornerstoneExtensionConfig],
-    /* WARNING: MUST BE REGISTERED _AFTER_ OHIFCornerstoneExtension */
-    MeasurementsPanel,
   ];
+
+  if (appConfig.disableMeasurementPanel !== true) {
+    /* WARNING: MUST BE REGISTERED _AFTER_ OHIFCornerstoneExtension */
+    requiredExtensions.push(MeasurementsPanel);
+  }
+
   const mergedExtensions = requiredExtensions.concat(extensions);
   extensionManager.registerExtensions(mergedExtensions);
 }

platform/viewer/src/components/ViewportGrid/ViewportGrid.js

@@ -80,6 +80,7 @@ const ViewportGrid = function(props) {
       // - When updating a panel, ensure that the currently enabled plugin
       // in the viewport is capable of rendering this display set. If not
       // then use the most capable available plugin
+
       const pluginName =
         !layout.plugin && displaySet && displaySet.plugin
           ? displaySet.plugin

platform/viewer/src/connectedComponents/ConnectedStudyBrowser.js

@@ -4,6 +4,8 @@ import { StudyBrowser } from '@ohif/ui';
 import cloneDeep from 'lodash.clonedeep';
 import findDisplaySetByUID from './findDisplaySetByUID';
 
+const { studyMetadataManager } = OHIF.utils;
+
 const { setActiveViewportSpecificData } = OHIF.redux.actions;
 
 // TODO
@@ -39,11 +41,27 @@ const mapStateToProps = (state, ownProps) => {
 const mapDispatchToProps = (dispatch, ownProps) => {
   return {
     onThumbnailClick: displaySetInstanceUID => {
-      const displaySet = findDisplaySetByUID(
+      let displaySet = findDisplaySetByUID(
         ownProps.studyMetadata,
         displaySetInstanceUID
       );
 
+      if (displaySet.isDerived) {
+        const { Modality } = displaySet;
+
+        displaySet = displaySet.getSourceDisplaySet(ownProps.studyMetadata);
+
+        if (!displaySet) {
+          throw new Error(
+            `Referenced series for ${Modality} dataset not present.`
+          );
+        }
+
+        if (!displaySet) {
+          throw new Error('Source data not present');
+        }
+      }
+
       dispatch(setActiveViewportSpecificData(displaySet));
     },
   };

platform/viewer/src/connectedComponents/ViewerMain.js

@@ -133,12 +133,23 @@ class ViewerMain extends Component {
     StudyInstanceUID,
     displaySetInstanceUID,
   }) => {
-    const displaySet = this.findDisplaySet(
+    let displaySet = this.findDisplaySet(
       this.props.studies,
       StudyInstanceUID,
       displaySetInstanceUID
     );
 
+    if (displaySet.isDerived) {
+      const { Modality } = displaySet;
+      displaySet = displaySet.getSourceDisplaySet(this.props.studies);
+
+      if (!displaySet) {
+        throw new Error(
+          `Referenced series for ${Modality} dataset not present.`
+        );
+      }
+    }
+
     this.props.setViewportSpecificData(viewportIndex, displaySet);
   };