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Author SHA1 Message Date
ohif-bot 05802a3cf1 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.53.0
 - @ohif/i18n@0.52.0
 - @ohif/ui@0.60.0
 - @ohif/viewer@2.6.0
2019-11-06 04:23:15 +00:00
Danny Brown 75d88bc454 feat: modal provider (#1151)
* feat: 🎸 New modal provider

A new modal provider/context component to unify modal related code and
simplify modal use

Closes: #1086

* refactor(ModalContext): Keep current modal lib

* Update modal provider version according to PR #1116

* Update modal provider props to use inner props

* Add custom class prop

* CR Update: Refactor provider to extract specific modal

* Fix modal import

* CR Update: Move from spread to object assign

* CR Update: Add proptypes, use classnames dependency over interpolation and rename modal

* fix: 🎸 Update AboutModal to use new modal provider (#1116)

* feat: 🎸 Update AboutModal to use new modal provider

This feature updates the AboutModal component and Header to use the new
modal context (modal provider)

* feat(ModalProvider): Add title prop to provider

* fix(ModalContext): Add defaults on hide

* CR Updates: Refactor modal provider and fix import

* CR Update: Expose props and flat modal optons

* Use customclassname instead of static

* Add cypress tag

* test: set right viewport when layout is decreased (#1146)

* chore(release): publish [skip ci]

 - @ohif/viewer@2.3.6

* fix: 🐛 Minor issues measurement panel related to description (#1142)

* chore(release): publish [skip ci]

 - @ohif/extension-vtk@0.52.28
 - @ohif/ui@0.58.5
 - @ohif/viewer@2.3.7

* fix: 🐛 Upgrade react-vtkjs-viewport to fix volume orientation (#1143)

* chore(release): publish [skip ci]

 - @ohif/extension-vtk@0.52.29
 - @ohif/viewer@2.3.8

* CR Update: Extract and rename AboutModal to AboutContent

* feat: 🎸 New modal provider (#1110)

* feat: 🎸 New modal provider

A new modal provider/context component to unify modal related code and
simplify modal use

Closes: #1086

* refactor(ModalContext): Keep current modal lib

* Update modal provider version according to PR #1116

* Update modal provider props to use inner props

* Add custom class prop

* CR Update: Refactor provider to extract specific modal

* Fix modal import

* CR Update: Move from spread to object assign

* CR Update: Add proptypes, use classnames dependency over interpolation and rename modal

* chore(release): publish [skip ci]

 - @ohif/extension-vtk@0.52.30
 - @ohif/ui@0.59.0
 - @ohif/viewer@2.4.0

* CR Update: Keep translation name

* CR Update: Reposition cy tag of about modal in the correct level

* feat: 🎸 Update DownloadModal to use new modal provider (#1119)

* feat: 🎸 Update AboutModal to use new modal provider

This feature updates the AboutModal component and Header to use the new
modal context (modal provider)

* feat(ModalProvider): Add title prop to provider

* feat(DownloadModal): Refactor to use new modal provider

* Update modal provider props

* Use translation for DownloadDialog

* CR Update: Use useTranslation hook

* CR Update: Extract downloadDialog and rename to downloadContent

* CR Update: Fix typo

* CR Update: Rename download content to viewport download form
2019-11-05 23:07:03 -05:00
ohif-bot 9827d1bf84 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.32
 - @ohif/core@1.7.0
 - @ohif/viewer@2.5.0
2019-11-05 22:00:36 +00:00
ladeirarodolfo e208f2e6a9 feat: 🎸 Filter by url query param for seriesInstnaceUID (#1117)
* feat: 🎸 Filter by url query param for seriesInstnaceUID

* fix: Set SR viewport as active by interaction (#1118)

* fix: Set SR viewport as active by interaction

* quick fix

* (eslint) add "before" as global variables

* add data-cy

* add data-cy

* create E2E test

* (E2E) create custom command to set layout size

* remove .only e2e

* remove throttle for onScroll

* feat: 🎸 Code review in progress

Code review. Move retrieveMEtadata load to separate folders. Some minor
code clean up

* feat: 🎸 Code review. Missing changes from previous commit

* feat: 🎸 Code review missing changes from previous commit

When sorting, Criteria for instance must use instanceNumber and not
instancesNumber

* feat: 🎸 Code review. Add more jsdoc info

* feat: 🎸 Code review. Prettify changed code

* feat: 🎸 Code review

Changed case for seriesInstanceUID. Use qido to filter (async). Fallback
to no params and same api method(async)
2019-11-05 16:48:44 -05:00
ohif-bot 9c1a3c3183 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.31
 - @ohif/core@1.6.2
 - @ohif/ui@0.59.1
 - @ohif/viewer@2.4.1
2019-11-05 20:01:36 +00:00
Emanuel Fiuza de Oliveira ecaf578f92 fix: #1075 Returning to the Study List before all series have finishe… (#1090)
* fix: #1075 Returning to the Study List before all series have finished loading throws multiple errors in console

* fix: 🐛 Addressing review feedback from issue #1075

Adding support for cancelable pattern

Closes: #1075

* fix: 🐛 update unit test for exports

Closes: #1075
2019-11-05 16:47:54 -03:00
ohif-bot d26adf92bd chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.30
 - @ohif/ui@0.59.0
 - @ohif/viewer@2.4.0
2019-11-04 16:06:44 +00:00
Igor Octaviano 5ee832b195 feat: 🎸 New modal provider (#1110)
* feat: 🎸 New modal provider

A new modal provider/context component to unify modal related code and
simplify modal use

Closes: #1086

* refactor(ModalContext): Keep current modal lib

* Update modal provider version according to PR #1116

* Update modal provider props to use inner props

* Add custom class prop

* CR Update: Refactor provider to extract specific modal

* Fix modal import

* CR Update: Move from spread to object assign

* CR Update: Add proptypes, use classnames dependency over interpolation and rename modal
2019-11-04 10:55:05 -05:00
ohif-bot 8baba22a2e chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.29
 - @ohif/viewer@2.3.8
2019-11-04 09:55:56 +00:00
James Petts 1d86b1a102 fix: 🐛 Upgrade react-vtkjs-viewport to fix volume orientation (#1143) 2019-11-04 10:45:53 +01:00
ohif-bot 25e6817248 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.28
 - @ohif/ui@0.58.5
 - @ohif/viewer@2.3.7
2019-11-04 04:07:09 +00:00
ladeirarodolfo 681384b742 fix: 🐛 Minor issues measurement panel related to description (#1142) 2019-11-03 22:53:24 -05:00
ohif-bot 54e07c281f chore(release): publish [skip ci]
- @ohif/viewer@2.3.6
2019-11-02 11:39:36 +00:00
Rodrigo Antinarelli 9dedccc7f9 test: set right viewport when layout is decreased (#1146) 2019-11-02 07:26:24 -04:00
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+52
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@@ -3,6 +3,58 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [0.53.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.32...@ohif/extension-vtk@0.53.0) (2019-11-06)
### Features
* modal provider ([#1151](https://github.com/OHIF/Viewers/issues/1151)) ([75d88bc](https://github.com/OHIF/Viewers/commit/75d88bc454710d2dcdbc7d68c4d9df041159c840)), closes [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1146](https://github.com/OHIF/Viewers/issues/1146) [#1142](https://github.com/OHIF/Viewers/issues/1142) [#1143](https://github.com/OHIF/Viewers/issues/1143) [#1110](https://github.com/OHIF/Viewers/issues/1110) [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1119](https://github.com/OHIF/Viewers/issues/1119)
## [0.52.32](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.31...@ohif/extension-vtk@0.52.32) (2019-11-05)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.31](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.30...@ohif/extension-vtk@0.52.31) (2019-11-05)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.30](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.29...@ohif/extension-vtk@0.52.30) (2019-11-04)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.29](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.28...@ohif/extension-vtk@0.52.29) (2019-11-04)
### Bug Fixes
* 🐛 Upgrade react-vtkjs-viewport to fix volume orientation ([#1143](https://github.com/OHIF/Viewers/issues/1143)) ([1d86b1a](https://github.com/OHIF/Viewers/commit/1d86b1a102fc422053cff103de8c12ca6f437354))
## [0.52.28](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.27...@ohif/extension-vtk@0.52.28) (2019-11-04)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.27](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.26...@ohif/extension-vtk@0.52.27) (2019-10-31)
**Note:** Version bump only for package @ohif/extension-vtk
+4 -4
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@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-vtk",
"version": "0.52.27",
"version": "0.53.0",
"description": "OHIF extension for VTK.js",
"author": "OHIF",
"license": "MIT",
@@ -49,11 +49,11 @@
"dependencies": {
"@babel/runtime": "^7.5.5",
"lodash.throttle": "^4.1.1",
"react-vtkjs-viewport": "^0.3.7"
"react-vtkjs-viewport": "^0.3.9"
},
"devDependencies": {
"@ohif/core": "^1.6.1",
"@ohif/ui": "^0.58.4",
"@ohif/core": "^1.7.0",
"@ohif/ui": "^0.60.0",
"cornerstone-tools": "^4.0.9",
"cornerstone-wado-image-loader": "^3.0.0",
"dcmjs": "^0.6.1",
+22
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@@ -3,6 +3,28 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [1.7.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.6.2...@ohif/core@1.7.0) (2019-11-05)
### Features
* 🎸 Filter by url query param for seriesInstnaceUID ([#1117](https://github.com/OHIF/Viewers/issues/1117)) ([e208f2e](https://github.com/OHIF/Viewers/commit/e208f2e6a9c49b16dadead0a917f657cf023929a)), closes [#1118](https://github.com/OHIF/Viewers/issues/1118)
## [1.6.2](https://github.com/OHIF/Viewers/compare/@ohif/core@1.6.1...@ohif/core@1.6.2) (2019-11-05)
### Bug Fixes
* [#1075](https://github.com/OHIF/Viewers/issues/1075) Returning to the Study List before all series have finishe… ([#1090](https://github.com/OHIF/Viewers/issues/1090)) ([ecaf578](https://github.com/OHIF/Viewers/commit/ecaf578f92dc40294cec7ff9b272fb432dec4125))
## [1.6.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.6.0...@ohif/core@1.6.1) (2019-10-31)
+1 -1
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@@ -1,6 +1,6 @@
{
"name": "@ohif/core",
"version": "1.6.1",
"version": "1.7.0",
"description": "Generic business logic for web-based medical imaging applications",
"author": "OHIF Core Team",
"license": "MIT",
@@ -0,0 +1,25 @@
import DICOMWeb from '../DICOMWeb/';
import isLowPriorityModality from '../utils/isLowPriorityModality';
const INFO = Symbol('INFO');
/**
* Creates an object with processed series information and saves its reference
* inside the series object itself.
* @param {Object} series The raw series object
* @returns {Object} object containing some useful info from given series
*/
export default function getSeriesInfo(series) {
let info = series[INFO];
if (!info) {
const modality = DICOMWeb.getString(series['00080060'], '').toUpperCase();
info = Object.freeze({
modality,
isLowPriority: isLowPriorityModality(modality),
seriesInstanceUid: DICOMWeb.getString(series['0020000E']),
seriesNumber: DICOMWeb.getNumber(series['00200011'], 0) || 0,
});
series[INFO] = info;
}
return info;
}
@@ -7,13 +7,16 @@ import { retrieveStudyMetadata } from './retrieveStudyMetadata';
* This function calls retrieveStudyMetadata several times, asynchronously,
* and waits for all of the results to be returned.
*
* @param studyInstanceUids The UIDs of the Studies to be retrieved
* @return Promise
* @param {Object} server Object with server configuration parameters
* @param {Array} studyInstanceUids The UIDs of the Studies to be retrieved
* @param {Object} [filters] - Object containing filters to be applied on retrieve metadata process
* @param {string} [filter.seriesInstanceUID] - series instance uid to filter results against
* @returns {Promise} that will be resolved with the metadata or rejected with the error
*/
export default function retrieveStudiesMetadata(
server,
studyInstanceUids,
seriesInstanceUids
filters
) {
// Create an empty array to store the Promises for each metaData retrieval call
const promises = [];
@@ -21,11 +24,7 @@ export default function retrieveStudiesMetadata(
// Loop through the array of studyInstanceUids
studyInstanceUids.forEach(function(studyInstanceUid) {
// Send the call and resolve or reject the related promise based on its outcome
const promise = retrieveStudyMetadata(
server,
studyInstanceUid,
seriesInstanceUids
);
const promise = retrieveStudyMetadata(server, studyInstanceUid, filters);
// Add the current promise to the array of promises
promises.push(promise);
@@ -7,11 +7,13 @@ const StudyMetaDataPromises = new Map();
/**
* Retrieves study metadata
*
* @param {Object} server
* @param {Object} server Object with server configuration parameters
* @param {string} studyInstanceUid The UID of the Study to be retrieved
* @param {Object} [filters] - Object containing filters to be applied on retrieve metadata process
* @param {string} [filter.seriesInstanceUID] - series instance uid to filter results against
* @returns {Promise} that will be resolved with the metadata or rejected with the error
*/
export function retrieveStudyMetadata(server, studyInstanceUid) {
export function retrieveStudyMetadata(server, studyInstanceUid, filters) {
// @TODO: Whenever a study metadata request has failed, its related promise will be rejected once and for all
// and further requests for that metadata will always fail. On failure, we probably need to remove the
// corresponding promise from the "StudyMetaDataPromises" map...
@@ -32,7 +34,7 @@ export function retrieveStudyMetadata(server, studyInstanceUid) {
// Create a promise to handle the data retrieval
const promise = new Promise((resolve, reject) => {
RetrieveMetadata(server, studyInstanceUid).then(function(data) {
RetrieveMetadata(server, studyInstanceUid, filters).then(function(data) {
resolve(data);
}, reject);
});
@@ -1,609 +1,30 @@
import { api } from 'dicomweb-client';
import DICOMWeb from '../../../DICOMWeb/';
import isLowPriorityModality from '../../../utils/isLowPriorityModality';
const INFO = Symbol('INFO');
const WADOProxy = {
convertURL: (url, server) => {
// TODO: Remove all WADOProxy stuff from this file
return url;
},
};
function parseFloatArray(obj) {
const result = [];
if (!obj) {
return result;
}
const objs = obj.split('\\');
for (let i = 0; i < objs.length; i++) {
result.push(parseFloat(objs[i]));
}
return result;
}
/**
* Simple cache schema for retrieved color palettes.
*/
const paletteColorCache = {
count: 0,
maxAge: 24 * 60 * 60 * 1000, // 24h cache?
entries: {},
isValidUID: function(paletteUID) {
return typeof paletteUID === 'string' && paletteUID.length > 0;
},
get: function(paletteUID) {
let entry = null;
if (this.entries.hasOwnProperty(paletteUID)) {
entry = this.entries[paletteUID];
// check how the entry is...
if (Date.now() - entry.time > this.maxAge) {
// entry is too old... remove entry.
delete this.entries[paletteUID];
this.count--;
entry = null;
}
}
return entry;
},
add: function(entry) {
if (this.isValidUID(entry.uid)) {
let paletteUID = entry.uid;
if (this.entries.hasOwnProperty(paletteUID) !== true) {
this.count++; // increment cache entry count...
}
entry.time = Date.now();
this.entries[paletteUID] = entry;
// @TODO: Add logic to get rid of old entries and reduce memory usage...
}
},
};
/** Returns a WADO url for an instance
*
* @param studyInstanceUid
* @param seriesInstanceUid
* @param sopInstanceUid
* @returns {string}
*/
function buildInstanceWadoUrl(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
) {
// TODO: This can be removed, since DICOMWebClient has the same function. Not urgent, though
const params = [];
params.push('requestType=WADO');
params.push(`studyUID=${studyInstanceUid}`);
params.push(`seriesUID=${seriesInstanceUid}`);
params.push(`objectUID=${sopInstanceUid}`);
params.push('contentType=application/dicom');
params.push('transferSyntax=*');
const paramString = params.join('&');
return `${server.wadoUriRoot}?${paramString}`;
}
function buildInstanceWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
) {
return `${server.wadoRoot}/studies/${studyInstanceUid}/series/${seriesInstanceUid}/instances/${sopInstanceUid}`;
}
function buildInstanceFrameWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid,
frame
) {
const baseWadoRsUri = buildInstanceWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
frame = frame != null || 1;
return `${baseWadoRsUri}/frames/${frame}`;
}
/**
* Parses the SourceImageSequence, if it exists, in order
* to return a ReferenceSOPInstanceUID. The ReferenceSOPInstanceUID
* is used to refer to this image in any accompanying DICOM-SR documents.
*
* @param instance
* @returns {String} The ReferenceSOPInstanceUID
*/
function getSourceImageInstanceUid(instance) {
// TODO= Parse the whole Source Image Sequence
// This is a really poor workaround for now.
// Later we should probably parse the whole sequence.
var SourceImageSequence = instance['00082112'];
if (
SourceImageSequence &&
SourceImageSequence.Value &&
SourceImageSequence.Value.length &&
SourceImageSequence.Value[0]['00081155'].Value
) {
return SourceImageSequence.Value[0]['00081155'].Value[0];
}
}
function getPaletteColor(server, instance, tag, lutDescriptor) {
const numLutEntries = lutDescriptor[0];
const bits = lutDescriptor[2];
let uri = WADOProxy.convertURL(instance[tag].BulkDataURI, server);
// TODO: Workaround for dcm4chee behind SSL-terminating proxy returning
// incorrect bulk data URIs
if (server.wadoRoot.indexOf('https') === 0 && !uri.includes('https')) {
uri = uri.replace('http', 'https');
}
const config = {
url: server.wadoRoot, //BulkDataURI is absolute, so this isn't used
headers: DICOMWeb.getAuthorizationHeader(server),
};
const dicomWeb = new api.DICOMwebClient(config);
const options = {
BulkDataURI: uri,
};
const readUInt16 = (byteArray, position) => {
return byteArray[position] + byteArray[position + 1] * 256;
};
const arrayBufferToPaletteColorLUT = result => {
const arraybuffer = result[0];
const byteArray = new Uint8Array(arraybuffer);
const lut = [];
for (let i = 0; i < numLutEntries; i++) {
if (bits === 16) {
lut[i] = readUInt16(byteArray, i * 2);
} else {
lut[i] = byteArray[i];
}
}
return lut;
};
return dicomWeb.retrieveBulkData(options).then(arrayBufferToPaletteColorLUT);
}
/**
* Fetch palette colors for instances with "PALETTE COLOR" photometricInterpretation.
*
* @param server {Object} Current server;
* @param instance {Object} The retrieved instance metadata;
* @returns {String} The ReferenceSOPInstanceUID
*/
async function getPaletteColors(server, instance, lutDescriptor) {
let paletteUID = DICOMWeb.getString(instance['00281199']);
return new Promise((resolve, reject) => {
let entry;
if (paletteColorCache.isValidUID(paletteUID)) {
entry = paletteColorCache.get(paletteUID);
if (entry) {
return resolve(entry);
}
}
// no entry in cache... Fetch remote data.
const r = getPaletteColor(server, instance, '00281201', lutDescriptor);
const g = getPaletteColor(server, instance, '00281202', lutDescriptor);
const b = getPaletteColor(server, instance, '00281203', lutDescriptor);
const promises = [r, g, b];
Promise.all(promises).then(args => {
entry = {
red: args[0],
green: args[1],
blue: args[2],
};
// when paletteUID is present, the entry can be cached...
entry.uid = paletteUID;
paletteColorCache.add(entry);
resolve(entry);
});
});
}
function getFrameIncrementPointer(element) {
const frameIncrementPointerNames = {
'00181065': 'frameTimeVector',
'00181063': 'frameTime',
};
if (!element || !element.Value || !element.Value.length) {
return;
}
const value = element.Value[0];
return frameIncrementPointerNames[value];
}
function getRadiopharmaceuticalInfo(instance) {
const modality = DICOMWeb.getString(instance['00080060']);
if (modality !== 'PT') {
return;
}
const radiopharmaceuticalInfo = instance['00540016'];
if (
radiopharmaceuticalInfo === undefined ||
!radiopharmaceuticalInfo.Value ||
!radiopharmaceuticalInfo.Value.length
) {
return;
}
const firstPetRadiopharmaceuticalInfo = radiopharmaceuticalInfo.Value[0];
return {
radiopharmaceuticalStartTime: DICOMWeb.getString(
firstPetRadiopharmaceuticalInfo['00181072']
),
radionuclideTotalDose: DICOMWeb.getNumber(
firstPetRadiopharmaceuticalInfo['00181074']
),
radionuclideHalfLife: DICOMWeb.getNumber(
firstPetRadiopharmaceuticalInfo['00181075']
),
};
}
async function makeSOPInstance(server, study, instance) {
const { studyInstanceUid } = study;
const seriesInstanceUid = DICOMWeb.getString(instance['0020000E']);
let series = study.seriesMap[seriesInstanceUid];
if (!series) {
series = {
seriesInstanceUid,
seriesDescription: DICOMWeb.getString(instance['0008103E']),
modality: DICOMWeb.getString(instance['00080060']),
seriesNumber: DICOMWeb.getNumber(instance['00200011']),
seriesDate: DICOMWeb.getString(instance['00080021']),
seriesTime: DICOMWeb.getString(instance['00080031']),
instances: [],
};
study.seriesMap[seriesInstanceUid] = series;
study.seriesList.push(series);
}
const sopInstanceUid = DICOMWeb.getString(instance['00080018']);
const wadouri = buildInstanceWadoUrl(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const baseWadoRsUri = buildInstanceWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const wadorsuri = buildInstanceFrameWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const sopInstance = {
imageType: DICOMWeb.getString(instance['00080008']),
sopClassUid: DICOMWeb.getString(instance['00080016']),
modality: DICOMWeb.getString(instance['00080060']),
sopInstanceUid,
instanceNumber: DICOMWeb.getNumber(instance['00200013']),
imagePositionPatient: DICOMWeb.getString(instance['00200032']),
imageOrientationPatient: DICOMWeb.getString(instance['00200037']),
frameOfReferenceUID: DICOMWeb.getString(instance['00200052']),
sliceLocation: DICOMWeb.getNumber(instance['00201041']),
samplesPerPixel: DICOMWeb.getNumber(instance['00280002']),
photometricInterpretation: DICOMWeb.getString(instance['00280004']),
planarConfiguration: DICOMWeb.getNumber(instance['00280006']),
rows: DICOMWeb.getNumber(instance['00280010']),
columns: DICOMWeb.getNumber(instance['00280011']),
pixelSpacing: DICOMWeb.getString(instance['00280030']),
pixelAspectRatio: DICOMWeb.getString(instance['00280034']),
bitsAllocated: DICOMWeb.getNumber(instance['00280100']),
bitsStored: DICOMWeb.getNumber(instance['00280101']),
highBit: DICOMWeb.getNumber(instance['00280102']),
pixelRepresentation: DICOMWeb.getNumber(instance['00280103']),
smallestPixelValue: DICOMWeb.getNumber(instance['00280106']),
largestPixelValue: DICOMWeb.getNumber(instance['00280107']),
windowCenter: DICOMWeb.getString(instance['00281050']),
windowWidth: DICOMWeb.getString(instance['00281051']),
rescaleIntercept: DICOMWeb.getNumber(instance['00281052']),
rescaleSlope: DICOMWeb.getNumber(instance['00281053']),
rescaleType: DICOMWeb.getNumber(instance['00281054']),
sourceImageInstanceUid: getSourceImageInstanceUid(instance),
laterality: DICOMWeb.getString(instance['00200062']),
viewPosition: DICOMWeb.getString(instance['00185101']),
acquisitionDateTime: DICOMWeb.getString(instance['0008002A']),
numberOfFrames: DICOMWeb.getNumber(instance['00280008']),
frameIncrementPointer: getFrameIncrementPointer(instance['00280009']),
frameTime: DICOMWeb.getNumber(instance['00181063']),
frameTimeVector: parseFloatArray(DICOMWeb.getString(instance['00181065'])),
sliceThickness: DICOMWeb.getNumber(instance['00180050']),
spacingBetweenSlices: DICOMWeb.getString(instance['00180088']),
lossyImageCompression: DICOMWeb.getString(instance['00282110']),
derivationDescription: DICOMWeb.getString(instance['00282111']),
lossyImageCompressionRatio: DICOMWeb.getString(instance['00282112']),
lossyImageCompressionMethod: DICOMWeb.getString(instance['00282114']),
echoNumber: DICOMWeb.getString(instance['00180086']),
contrastBolusAgent: DICOMWeb.getString(instance['00180010']),
radiopharmaceuticalInfo: getRadiopharmaceuticalInfo(instance),
baseWadoRsUri: baseWadoRsUri,
wadouri: WADOProxy.convertURL(wadouri, server),
wadorsuri: WADOProxy.convertURL(wadorsuri, server),
wadoRoot: server.wadoRoot,
imageRendering: server.imageRendering,
thumbnailRendering: server.thumbnailRendering,
};
// Get additional information if the instance uses "PALETTE COLOR" photometric interpretation
if (sopInstance.photometricInterpretation === 'PALETTE COLOR') {
const redPaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281101'])
);
const greenPaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281102'])
);
const bluePaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281103'])
);
const palettes = await getPaletteColors(
server,
instance,
redPaletteColorLookupTableDescriptor
);
if (palettes) {
if (palettes.uid) {
sopInstance.paletteColorLookupTableUID = palettes.uid;
}
sopInstance.redPaletteColorLookupTableData = palettes.red;
sopInstance.greenPaletteColorLookupTableData = palettes.green;
sopInstance.bluePaletteColorLookupTableData = palettes.blue;
sopInstance.redPaletteColorLookupTableDescriptor = redPaletteColorLookupTableDescriptor;
sopInstance.greenPaletteColorLookupTableDescriptor = greenPaletteColorLookupTableDescriptor;
sopInstance.bluePaletteColorLookupTableDescriptor = bluePaletteColorLookupTableDescriptor;
}
}
series.instances.push(sopInstance);
return sopInstance;
}
/**
* Create a plain JS object that describes a study (a study descriptor object)
* @param {Object} server Object with server configuration paramenters
* @param {Object} aSopInstance a SOP Instance from which study information will be added
*/
function createStudy(server, aSopInstance) {
// TODO: Pass a reference ID to the server instead of including the URLs here
return {
seriesList: [],
seriesMap: Object.create(null),
seriesLoader: null,
wadoUriRoot: server.wadoUriRoot,
wadoRoot: server.wadoRoot,
qidoRoot: server.qidoRoot,
patientName: DICOMWeb.getName(aSopInstance['00100010']),
patientId: DICOMWeb.getString(aSopInstance['00100020']),
patientAge: DICOMWeb.getNumber(aSopInstance['00101010']),
patientSize: DICOMWeb.getNumber(aSopInstance['00101020']),
patientWeight: DICOMWeb.getNumber(aSopInstance['00101030']),
accessionNumber: DICOMWeb.getString(aSopInstance['00080050']),
studyDate: DICOMWeb.getString(aSopInstance['00080020']),
modalities: DICOMWeb.getString(aSopInstance['00080061']),
studyDescription: DICOMWeb.getString(aSopInstance['00081030']),
imageCount: DICOMWeb.getString(aSopInstance['00201208']),
studyInstanceUid: DICOMWeb.getString(aSopInstance['0020000D']),
institutionName: DICOMWeb.getString(aSopInstance['00080080']),
};
}
/**
* Add a list of SOP Instances to a given study object descriptor
* @param {Object} server Object with server configuration paramenters
* @param {Object} study The study descriptor to which the given SOP instances will be added
* @param {Array} sopInstanceList A list of SOP instance objects
*/
async function addInstancesToStudy(server, study, sopInstanceList) {
return Promise.all(
sopInstanceList.map(function(sopInstance) {
return makeSOPInstance(server, study, sopInstance);
})
);
}
/**
* Parses result data from a WADO search into Study MetaData
* Returns an object populated with study metadata, including the
* series list.
*
* @param {Object} server Object with server configuration paramenters
* @param {Array} sopInstanceList List of SOP Instances that build up to the study
* @resolves {{seriesList: Array, patientName: *, patientId: *, accessionNumber: *, studyDate: *, modalities: *, studyDescription: *, imageCount: *, studyInstanceUid: *}}
*/
async function createStudyFromSOPInstanceList(server, sopInstanceList) {
if (Array.isArray(sopInstanceList) && sopInstanceList.length > 0) {
const firstSopInstance = sopInstanceList[0];
const study = createStudy(server, firstSopInstance);
await addInstancesToStudy(server, study, sopInstanceList);
return study;
}
throw new Error('Failed to create study out of provided SOP instance list');
}
import RetrieveMetadataLoaderSync from './retrieveMetadataLoaderSync';
import RetrieveMetadataLoaderAsync from './retrieveMetadataLoaderAsync';
/**
* Retrieve Study metadata from a DICOM server. If the server is configured to use lazy load, only the first series
* will be loaded and the property "studyLoader" will be set to let consumer load remaining series as needed
* @param {Object} server Object with server configuration paramenters
* will be loaded and the property "studyLoader" will be set to let consumer load remaining series as needed.
*
* @param {Object} server Object with server configuration parameters
* @param {string} studyInstanceUid The Study Instance UID of the study which needs to be loaded
* @param {Object} [filters] - Object containing filters to be applied on retrieve metadata process
* @param {string} [filter.seriesInstanceUID] - series instance uid to filter results against
* @returns {Object} A study descriptor object
*/
async function RetrieveMetadata(server, studyInstanceUid) {
return (server.enableStudyLazyLoad !== false
? lazyLoadStudyMetadata
: loadStudyMetadata)(server, studyInstanceUid);
}
async function RetrieveMetadata(server, studyInstanceUid, filters = {}) {
const RetrieveMetadataLoader =
server.enableStudyLazyLoad !== false
? RetrieveMetadataLoaderAsync
: RetrieveMetadataLoaderSync;
/**
*
* @param {*} server
* @param {*} studyInstanceUID
*/
async function loadStudyMetadata(server, studyInstanceUID) {
const dicomWeb = new api.DICOMwebClient({
url: server.wadoRoot,
headers: DICOMWeb.getAuthorizationHeader(server),
});
return dicomWeb
.retrieveStudyMetadata({ studyInstanceUID })
.then(result => createStudyFromSOPInstanceList(server, result));
}
async function lazyLoadStudyMetadata(server, studyInstanceUid) {
const seriesInstanceUids = await searchStudySeries(server, studyInstanceUid);
const dicomWeb = new api.DICOMwebClient({
url: server.wadoRoot,
headers: DICOMWeb.getAuthorizationHeader(server),
});
const seriesLoader = makeSeriesLoader(
dicomWeb,
studyInstanceUid,
seriesInstanceUids
);
const firstSeries = await seriesLoader.next();
const study = await createStudyFromSOPInstanceList(
const retrieveMetadataLoader = new RetrieveMetadataLoader(
server,
firstSeries.sopInstances
studyInstanceUid,
filters
);
if (seriesLoader.hasNext()) {
attachSeriesLoader(server, study, seriesLoader);
}
return study;
}
const studyMetadata = retrieveMetadataLoader.execLoad();
function attachSeriesLoader(server, study, seriesLoader) {
study.seriesLoader = Object.freeze({
hasNext() {
return seriesLoader.hasNext();
},
async next() {
const series = await seriesLoader.next();
await addInstancesToStudy(server, study, series.sopInstances);
return study.seriesMap[series.seriesInstanceUID];
},
});
}
/**
* Creates an immutable series loader object which loads each series sequentially using the iterator interface
* @param {DICOMWebClient} dicomWebClient The DICOMWebClient instance to be used for series load
* @param {string} studyInstanceUID The Study Instance UID from which series will be loaded
* @param {Array} seriesInstanceUIDList A list of Series Instance UIDs
* @returns {Object} Returns an object which supports loading of instances from each of given Series Instance UID
*/
function makeSeriesLoader(
dicomWebClient,
studyInstanceUID,
seriesInstanceUIDList
) {
return Object.freeze({
hasNext() {
return seriesInstanceUIDList.length > 0;
},
async next() {
const seriesInstanceUID = seriesInstanceUIDList.shift();
const sopInstances = await dicomWebClient.retrieveSeriesMetadata({
studyInstanceUID,
seriesInstanceUID,
});
return { studyInstanceUID, seriesInstanceUID, sopInstances };
},
});
}
/**
* Search series of a given study
* @param {Object} server Object with server configuration paramenters
* @param {string} studyInstanceUID The Study Instance UID to search series from;
* @returns {Arrays} A list of Series Instance UIDs
*/
async function searchStudySeries(server, studyInstanceUID) {
const dicomWeb = new api.DICOMwebClient({
url: server.qidoRoot,
headers: DICOMWeb.getAuthorizationHeader(server),
});
const seriesList = await dicomWeb.searchForSeries({ studyInstanceUID });
return seriesList
.sort(seriesSortingCriteria)
.map(series => getSeriesInfo(series).seriesInstanceUid);
}
/**
* Series sorting criteria: series considered low priority are moved to the end
* of the list and series number is used to break ties
* @param {Object} firstSeries
* @param {Object} secondSeries
*/
function seriesSortingCriteria(firstSeries, secondSeries) {
const a = getSeriesInfo(firstSeries);
const b = getSeriesInfo(secondSeries);
if (!a.isLowPriority && b.isLowPriority) {
return -1;
}
if (a.isLowPriority && !b.isLowPriority) {
return 1;
}
return a.seriesNumber - b.seriesNumber;
}
/**
* Creates an object with processed series information and saves its reference
* inside the series object itself to simplify sorting
* @param {Object} series The raw series object
*/
function getSeriesInfo(series) {
let info = series[INFO];
if (!info) {
const modality = DICOMWeb.getString(series['00080060'], '').toUpperCase();
info = Object.freeze({
modality,
isLowPriority: isLowPriorityModality(modality),
seriesInstanceUid: DICOMWeb.getString(series['0020000E']),
seriesNumber: DICOMWeb.getNumber(series['00200011'], 0) || 0,
});
series[INFO] = info;
}
return info;
return studyMetadata;
}
export default RetrieveMetadata;
@@ -0,0 +1,58 @@
/**
* Class to define inheritance of load retrieve strategy.
* The process can be async load (lazy) or sync load
*
* There are methods that must be implemented at consumer level
* To retrieve study call execLoad
*/
export default class RetrieveMetadataLoader {
/**
* @constructor
* @param {Object} server Object with server configuration parameters
* @param {Array} studyInstanceUID Study instance ui to be retrieved
* @param {Object} [filters] - Object containing filters to be applied on retrieve metadata process
* @param {string} [filter.seriesInstanceUID] - series instance uid to filter results against
*/
constructor(server, studyInstanceUID, filters = {}) {
this.server = server;
this.studyInstanceUID = studyInstanceUID;
this.filters = filters;
}
async execLoad() {
await this.configLoad();
const preLoadData = await this.preLoad();
const loadData = await this.load(preLoadData);
const postLoadData = await this.posLoad(loadData);
return postLoadData;
}
/**
* It iterates over given loaders running each one. Loaders parameters must be bind when getting it.
* @param {Array} loaders - array of loader to retrieve data.
*/
async runLoaders(loaders) {
let result;
for (const loader of loaders) {
try {
result = await loader();
if (result && result.length) {
break; // closes iterator in case data is retrieved successfully
}
} catch (e) {}
}
if (loaders.next().done && !result) {
throw 'cant find data';
}
return result;
}
// Methods to be overwrite
async configLoad() {}
async preLoad() {}
async load(preLoadData) {}
async posLoad(loadData) {}
}
@@ -0,0 +1,145 @@
import { api } from 'dicomweb-client';
import DICOMWeb from '../../../DICOMWeb/';
import RetrieveMetadataLoader from './retrieveMetadataLoader';
import { sortStudySeries, sortingCriteria } from '../../sortStudy';
import getSeriesInfo from '../../getSeriesInfo';
import {
createStudyFromSOPInstanceList,
addInstancesToStudy,
} from './studyInstanceHelpers';
/**
* Map seriesList to an array of seriesInstanceUid
* @param {Arrays} seriesList list of Series Instance UIDs
* @returns {Arrays} A list of Series Instance UIDs
*/
function mapStudySeries(seriesList) {
return seriesList.map(series => getSeriesInfo(series).seriesInstanceUid);
}
function attachSeriesLoader(server, study, seriesLoader) {
study.seriesLoader = Object.freeze({
hasNext() {
return seriesLoader.hasNext();
},
async next() {
const series = await seriesLoader.next();
await addInstancesToStudy(server, study, series.sopInstances);
return study.seriesMap[series.seriesInstanceUID];
},
});
}
/**
* Creates an immutable series loader object which loads each series sequentially using the iterator interface
* @param {DICOMWebClient} dicomWebClient The DICOMWebClient instance to be used for series load
* @param {string} studyInstanceUID The Study Instance UID from which series will be loaded
* @param {Array} seriesInstanceUIDList A list of Series Instance UIDs
* @returns {Object} Returns an object which supports loading of instances from each of given Series Instance UID
*/
function makeSeriesAsyncLoader(
dicomWebClient,
studyInstanceUID,
seriesInstanceUIDList
) {
return Object.freeze({
hasNext() {
return seriesInstanceUIDList.length > 0;
},
async next() {
const seriesInstanceUID = seriesInstanceUIDList.shift();
const sopInstances = await dicomWebClient.retrieveSeriesMetadata({
studyInstanceUID,
seriesInstanceUID,
});
return { studyInstanceUID, seriesInstanceUID, sopInstances };
},
});
}
/**
* Class for async load of study metadata.
* It inherits from RetrieveMetadataLoader
*
* It loads the one series and then append to seriesLoader the others to be consumed/loaded
*/
export default class RetrieveMetadataLoaderAsync extends RetrieveMetadataLoader {
configLoad() {
const { server } = this;
const client = new api.DICOMwebClient({
url: server.qidoRoot,
headers: DICOMWeb.getAuthorizationHeader(server),
});
this.client = client;
}
/**
* @returns {Array} Array of preLoaders. To be consumed as queue
*/
*getPreLoaders() {
const preLoaders = [];
const {
studyInstanceUID,
filters: { seriesInstanceUID } = {},
client,
} = this;
if (seriesInstanceUID) {
const options = {
studyInstanceUID,
queryParams: { SeriesInstanceUID: seriesInstanceUID },
};
preLoaders.push(client.searchForSeries.bind(client, options));
}
// Fallback preloader
preLoaders.push(client.searchForSeries.bind(client, { studyInstanceUID }));
yield* preLoaders;
}
async preLoad() {
const preLoaders = this.getPreLoaders();
const result = await this.runLoaders(preLoaders);
const seriesSorted = sortStudySeries(
result,
sortingCriteria.seriesSortCriteria.seriesInfoSortingCriteria
);
const seriesInstanceUidsMap = mapStudySeries(seriesSorted);
return seriesInstanceUidsMap;
}
async load(preLoadData) {
const { client, studyInstanceUID } = this;
const seriesAsyncLoader = makeSeriesAsyncLoader(
client,
studyInstanceUID,
preLoadData
);
const firstSeries = await seriesAsyncLoader.next();
return {
sopInstances: firstSeries.sopInstances,
asyncLoader: seriesAsyncLoader,
};
}
async posLoad(loadData) {
const { server } = this;
const { sopInstances, asyncLoader } = loadData;
const study = await createStudyFromSOPInstanceList(server, sopInstances);
if (asyncLoader.hasNext()) {
attachSeriesLoader(server, study, asyncLoader);
}
return study;
}
}
@@ -0,0 +1,76 @@
import { api } from 'dicomweb-client';
import DICOMWeb from '../../../DICOMWeb/';
import { createStudyFromSOPInstanceList } from './studyInstanceHelpers';
import RetrieveMetadataLoader from './retrieveMetadataLoader';
/**
* Class for sync load of study metadata.
* It inherits from RetrieveMetadataLoader
*
* A list of loaders (getLoaders) can be created so, it will be applied a fallback load strategy.
* I.e Retrieve metadata using all loaders possibilities.
*/
export default class RetrieveMetadataLoaderSync extends RetrieveMetadataLoader {
getOptions() {
const { studyInstanceUID, filters } = this;
const options = {
studyInstanceUID,
};
const { seriesInstanceUID } = filters;
if (seriesInstanceUID) {
options['seriesInstanceUID'] = seriesInstanceUID;
}
return options;
}
/**
* @returns {Array} Array of loaders. To be consumed as queue
*/
*getLoaders() {
const loaders = [];
const {
studyInstanceUID,
filters: { seriesInstanceUID } = {},
client,
} = this;
if (seriesInstanceUID) {
loaders.push(
client.retrieveSeriesMetadata.bind(client, {
studyInstanceUID,
seriesInstanceUID,
})
);
}
loaders.push(
client.retrieveStudyMetadata.bind(client, { studyInstanceUID })
);
yield* loaders;
}
configLoad() {
const { server } = this;
const client = new api.DICOMwebClient({
url: server.wadoRoot,
headers: DICOMWeb.getAuthorizationHeader(server),
});
this.client = client;
}
async load(preLoadData) {
const loaders = this.getLoaders();
const result = this.runLoaders(loaders);
return result;
}
async posLoad(loadData) {
const { server } = this;
return createStudyFromSOPInstanceList(server, loadData);
}
}
@@ -0,0 +1,413 @@
import DICOMWeb from '../../../DICOMWeb';
const WADOProxy = {
convertURL: (url, server) => {
// TODO: Remove all WADOProxy stuff from this file
return url;
},
};
function parseFloatArray(obj) {
const result = [];
if (!obj) {
return result;
}
const objs = obj.split('\\');
for (let i = 0; i < objs.length; i++) {
result.push(parseFloat(objs[i]));
}
return result;
}
/**
* Create a plain JS object that describes a study (a study descriptor object)
* @param {Object} server Object with server configuration parameters
* @param {Object} aSopInstance a SOP Instance from which study information will be added
*/
function createStudy(server, aSopInstance) {
// TODO: Pass a reference ID to the server instead of including the URLs here
return {
seriesList: [],
seriesMap: Object.create(null),
seriesLoader: null,
wadoUriRoot: server.wadoUriRoot,
wadoRoot: server.wadoRoot,
qidoRoot: server.qidoRoot,
patientName: DICOMWeb.getName(aSopInstance['00100010']),
patientId: DICOMWeb.getString(aSopInstance['00100020']),
patientAge: DICOMWeb.getNumber(aSopInstance['00101010']),
patientSize: DICOMWeb.getNumber(aSopInstance['00101020']),
patientWeight: DICOMWeb.getNumber(aSopInstance['00101030']),
accessionNumber: DICOMWeb.getString(aSopInstance['00080050']),
studyDate: DICOMWeb.getString(aSopInstance['00080020']),
modalities: DICOMWeb.getString(aSopInstance['00080061']),
studyDescription: DICOMWeb.getString(aSopInstance['00081030']),
imageCount: DICOMWeb.getString(aSopInstance['00201208']),
studyInstanceUid: DICOMWeb.getString(aSopInstance['0020000D']),
institutionName: DICOMWeb.getString(aSopInstance['00080080']),
};
}
/** Returns a WADO url for an instance
*
* @param studyInstanceUid
* @param seriesInstanceUid
* @param sopInstanceUid
* @returns {string}
*/
function buildInstanceWadoUrl(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
) {
// TODO: This can be removed, since DICOMWebClient has the same function. Not urgent, though
const params = [];
params.push('requestType=WADO');
params.push(`studyUID=${studyInstanceUid}`);
params.push(`seriesUID=${seriesInstanceUid}`);
params.push(`objectUID=${sopInstanceUid}`);
params.push('contentType=application/dicom');
params.push('transferSyntax=*');
const paramString = params.join('&');
return `${server.wadoUriRoot}?${paramString}`;
}
function buildInstanceWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
) {
return `${server.wadoRoot}/studies/${studyInstanceUid}/series/${seriesInstanceUid}/instances/${sopInstanceUid}`;
}
function buildInstanceFrameWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid,
frame
) {
const baseWadoRsUri = buildInstanceWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
frame = frame != null || 1;
return `${baseWadoRsUri}/frames/${frame}`;
}
function getFrameIncrementPointer(element) {
const frameIncrementPointerNames = {
'00181065': 'frameTimeVector',
'00181063': 'frameTime',
};
if (!element || !element.Value || !element.Value.length) {
return;
}
const value = element.Value[0];
return frameIncrementPointerNames[value];
}
function getRadiopharmaceuticalInfo(instance) {
const modality = DICOMWeb.getString(instance['00080060']);
if (modality !== 'PT') {
return;
}
const radiopharmaceuticalInfo = instance['00540016'];
if (
radiopharmaceuticalInfo === undefined ||
!radiopharmaceuticalInfo.Value ||
!radiopharmaceuticalInfo.Value.length
) {
return;
}
const firstPetRadiopharmaceuticalInfo = radiopharmaceuticalInfo.Value[0];
return {
radiopharmaceuticalStartTime: DICOMWeb.getString(
firstPetRadiopharmaceuticalInfo['00181072']
),
radionuclideTotalDose: DICOMWeb.getNumber(
firstPetRadiopharmaceuticalInfo['00181074']
),
radionuclideHalfLife: DICOMWeb.getNumber(
firstPetRadiopharmaceuticalInfo['00181075']
),
};
}
/**
* Parses the SourceImageSequence, if it exists, in order
* to return a ReferenceSOPInstanceUID. The ReferenceSOPInstanceUID
* is used to refer to this image in any accompanying DICOM-SR documents.
*
* @param instance
* @returns {String} The ReferenceSOPInstanceUID
*/
function getSourceImageInstanceUid(instance) {
// TODO= Parse the whole Source Image Sequence
// This is a really poor workaround for now.
// Later we should probably parse the whole sequence.
var SourceImageSequence = instance['00082112'];
if (
SourceImageSequence &&
SourceImageSequence.Value &&
SourceImageSequence.Value.length &&
SourceImageSequence.Value[0]['00081155'].Value
) {
return SourceImageSequence.Value[0]['00081155'].Value[0];
}
}
async function makeSOPInstance(server, study, instance) {
const { studyInstanceUid } = study;
const seriesInstanceUid = DICOMWeb.getString(instance['0020000E']);
let series = study.seriesMap[seriesInstanceUid];
if (!series) {
series = {
seriesInstanceUid,
seriesDescription: DICOMWeb.getString(instance['0008103E']),
modality: DICOMWeb.getString(instance['00080060']),
seriesNumber: DICOMWeb.getNumber(instance['00200011']),
seriesDate: DICOMWeb.getString(instance['00080021']),
seriesTime: DICOMWeb.getString(instance['00080031']),
instances: [],
};
study.seriesMap[seriesInstanceUid] = series;
study.seriesList.push(series);
}
const sopInstanceUid = DICOMWeb.getString(instance['00080018']);
const wadouri = buildInstanceWadoUrl(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const baseWadoRsUri = buildInstanceWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const wadorsuri = buildInstanceFrameWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const sopInstance = {
imageType: DICOMWeb.getString(instance['00080008']),
sopClassUid: DICOMWeb.getString(instance['00080016']),
modality: DICOMWeb.getString(instance['00080060']),
sopInstanceUid,
instanceNumber: DICOMWeb.getNumber(instance['00200013']),
imagePositionPatient: DICOMWeb.getString(instance['00200032']),
imageOrientationPatient: DICOMWeb.getString(instance['00200037']),
frameOfReferenceUID: DICOMWeb.getString(instance['00200052']),
sliceLocation: DICOMWeb.getNumber(instance['00201041']),
samplesPerPixel: DICOMWeb.getNumber(instance['00280002']),
photometricInterpretation: DICOMWeb.getString(instance['00280004']),
planarConfiguration: DICOMWeb.getNumber(instance['00280006']),
rows: DICOMWeb.getNumber(instance['00280010']),
columns: DICOMWeb.getNumber(instance['00280011']),
pixelSpacing: DICOMWeb.getString(instance['00280030']),
pixelAspectRatio: DICOMWeb.getString(instance['00280034']),
bitsAllocated: DICOMWeb.getNumber(instance['00280100']),
bitsStored: DICOMWeb.getNumber(instance['00280101']),
highBit: DICOMWeb.getNumber(instance['00280102']),
pixelRepresentation: DICOMWeb.getNumber(instance['00280103']),
smallestPixelValue: DICOMWeb.getNumber(instance['00280106']),
largestPixelValue: DICOMWeb.getNumber(instance['00280107']),
windowCenter: DICOMWeb.getString(instance['00281050']),
windowWidth: DICOMWeb.getString(instance['00281051']),
rescaleIntercept: DICOMWeb.getNumber(instance['00281052']),
rescaleSlope: DICOMWeb.getNumber(instance['00281053']),
rescaleType: DICOMWeb.getNumber(instance['00281054']),
sourceImageInstanceUid: getSourceImageInstanceUid(instance),
laterality: DICOMWeb.getString(instance['00200062']),
viewPosition: DICOMWeb.getString(instance['00185101']),
acquisitionDateTime: DICOMWeb.getString(instance['0008002A']),
numberOfFrames: DICOMWeb.getNumber(instance['00280008']),
frameIncrementPointer: getFrameIncrementPointer(instance['00280009']),
frameTime: DICOMWeb.getNumber(instance['00181063']),
frameTimeVector: parseFloatArray(DICOMWeb.getString(instance['00181065'])),
sliceThickness: DICOMWeb.getNumber(instance['00180050']),
spacingBetweenSlices: DICOMWeb.getString(instance['00180088']),
lossyImageCompression: DICOMWeb.getString(instance['00282110']),
derivationDescription: DICOMWeb.getString(instance['00282111']),
lossyImageCompressionRatio: DICOMWeb.getString(instance['00282112']),
lossyImageCompressionMethod: DICOMWeb.getString(instance['00282114']),
echoNumber: DICOMWeb.getString(instance['00180086']),
contrastBolusAgent: DICOMWeb.getString(instance['00180010']),
radiopharmaceuticalInfo: getRadiopharmaceuticalInfo(instance),
baseWadoRsUri: baseWadoRsUri,
wadouri: WADOProxy.convertURL(wadouri, server),
wadorsuri: WADOProxy.convertURL(wadorsuri, server),
wadoRoot: server.wadoRoot,
imageRendering: server.imageRendering,
thumbnailRendering: server.thumbnailRendering,
};
// Get additional information if the instance uses "PALETTE COLOR" photometric interpretation
if (sopInstance.photometricInterpretation === 'PALETTE COLOR') {
const redPaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281101'])
);
const greenPaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281102'])
);
const bluePaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281103'])
);
const palettes = await getPaletteColors(
server,
instance,
redPaletteColorLookupTableDescriptor
);
if (palettes) {
if (palettes.uid) {
sopInstance.paletteColorLookupTableUID = palettes.uid;
}
sopInstance.redPaletteColorLookupTableData = palettes.red;
sopInstance.greenPaletteColorLookupTableData = palettes.green;
sopInstance.bluePaletteColorLookupTableData = palettes.blue;
sopInstance.redPaletteColorLookupTableDescriptor = redPaletteColorLookupTableDescriptor;
sopInstance.greenPaletteColorLookupTableDescriptor = greenPaletteColorLookupTableDescriptor;
sopInstance.bluePaletteColorLookupTableDescriptor = bluePaletteColorLookupTableDescriptor;
}
}
series.instances.push(sopInstance);
return sopInstance;
}
function getPaletteColor(server, instance, tag, lutDescriptor) {
const numLutEntries = lutDescriptor[0];
const bits = lutDescriptor[2];
let uri = WADOProxy.convertURL(instance[tag].BulkDataURI, server);
// TODO: Workaround for dcm4chee behind SSL-terminating proxy returning
// incorrect bulk data URIs
if (server.wadoRoot.indexOf('https') === 0 && !uri.includes('https')) {
uri = uri.replace('http', 'https');
}
const config = {
url: server.wadoRoot, //BulkDataURI is absolute, so this isn't used
headers: DICOMWeb.getAuthorizationHeader(server),
};
const dicomWeb = new api.DICOMwebClient(config);
const options = {
BulkDataURI: uri,
};
const readUInt16 = (byteArray, position) => {
return byteArray[position] + byteArray[position + 1] * 256;
};
const arrayBufferToPaletteColorLUT = result => {
const arraybuffer = result[0];
const byteArray = new Uint8Array(arraybuffer);
const lut = [];
for (let i = 0; i < numLutEntries; i++) {
if (bits === 16) {
lut[i] = readUInt16(byteArray, i * 2);
} else {
lut[i] = byteArray[i];
}
}
return lut;
};
return dicomWeb.retrieveBulkData(options).then(arrayBufferToPaletteColorLUT);
}
/**
* Fetch palette colors for instances with "PALETTE COLOR" photometricInterpretation.
*
* @param server {Object} Current server;
* @param instance {Object} The retrieved instance metadata;
* @returns {String} The ReferenceSOPInstanceUID
*/
async function getPaletteColors(server, instance, lutDescriptor) {
let paletteUID = DICOMWeb.getString(instance['00281199']);
return new Promise((resolve, reject) => {
let entry;
if (paletteColorCache.isValidUID(paletteUID)) {
entry = paletteColorCache.get(paletteUID);
if (entry) {
return resolve(entry);
}
}
// no entry in cache... Fetch remote data.
const r = getPaletteColor(server, instance, '00281201', lutDescriptor);
const g = getPaletteColor(server, instance, '00281202', lutDescriptor);
const b = getPaletteColor(server, instance, '00281203', lutDescriptor);
const promises = [r, g, b];
Promise.all(promises).then(args => {
entry = {
red: args[0],
green: args[1],
blue: args[2],
};
// when paletteUID is present, the entry can be cached...
entry.uid = paletteUID;
paletteColorCache.add(entry);
resolve(entry);
});
});
}
/**
* Add a list of SOP Instances to a given study object descriptor
* @param {Object} server Object with server configuration parameters
* @param {Object} study The study descriptor to which the given SOP instances will be added
* @param {Array} sopInstanceList A list of SOP instance objects
*/
async function addInstancesToStudy(server, study, sopInstanceList) {
return Promise.all(
sopInstanceList.map(function(sopInstance) {
return makeSOPInstance(server, study, sopInstance);
})
);
}
const createStudyFromSOPInstanceList = async (server, sopInstanceList) => {
if (Array.isArray(sopInstanceList) && sopInstanceList.length > 0) {
const firstSopInstance = sopInstanceList[0];
const study = createStudy(server, firstSopInstance);
await addInstancesToStudy(server, study, sopInstanceList);
return study;
}
throw new Error('Failed to create study out of provided SOP instance list');
};
export { createStudyFromSOPInstanceList, addInstancesToStudy };
+86 -7
View File
@@ -1,17 +1,96 @@
import getSeriesInfo from './getSeriesInfo';
/**
* Sorts the series and instances inside a study instance by their series
* and instance numbers in ascending order.
* Series sorting criteria: series considered low priority are moved to the end
* of the list and series number is used to break ties
* @param {Object} firstSeries
* @param {Object} secondSeries
*/
function seriesInfoSortingCriteria(firstSeries, secondSeries) {
const a = getSeriesInfo(firstSeries);
const b = getSeriesInfo(secondSeries);
if (!a.isLowPriority && b.isLowPriority) {
return -1;
}
if (a.isLowPriority && !b.isLowPriority) {
return 1;
}
return a.seriesNumber - b.seriesNumber;
}
const seriesSortCriteria = {
default: (a, b) => a.seriesNumber - b.seriesNumber,
seriesInfoSortingCriteria,
};
const instancesSortCriteria = {
default: (a, b) => a.instanceNumber - b.instanceNumber,
};
const sortingCriteria = {
seriesSortCriteria,
instancesSortCriteria,
};
/**
* Sorts given seriesList (given param is modified)
* The default criteria is based on series number in ascending order.
*
* @param {Array} seriesList List of series
* @param {function} seriesSortingCriteria method for sorting
* @returns {Array} sorted seriesList object
*/
const sortStudySeries = (
seriesList,
seriesSortingCriteria = seriesSortCriteria.default
) => {
return seriesList.sort(seriesSortingCriteria);
};
/**
* Sorts given instancesList (given param is modified)
* The default criteria is based on instance number in ascending order.
*
* @param {Array} instancesList List of series
* @param {function} instancesSortingCriteria method for sorting
* @returns {Array} sorted instancesList object
*/
const sortStudyInstances = (
instancesList,
instancesSortingCriteria = instancesSortCriteria.default
) => {
return instancesList.sort(instancesSortingCriteria);
};
/**
* Sorts the series and instances (by default) inside a study instance based on sortingCriteria (given param is modified)
* The default criteria is based on series and instance numbers in ascending order.
*
* @param {Object} study The study instance
* @param {boolean} [deepSort = true] to sort instance also
* @param {function} [seriesSortingCriteria = seriesSortCriteria.default] method for sorting series
* @param {function} [instancesSortingCriteria = instancesSortCriteria.default] method for sorting instances
* @returns {Object} sorted study object
*/
export default function sortStudy(study) {
export default function sortStudy(
study,
deepSort = true,
seriesSortingCriteria = seriesSortCriteria.default,
instancesSortingCriteria = instancesSortCriteria.default
) {
if (!study || !study.seriesList) {
throw new Error('Insufficient study data was provided to sortStudy');
}
study.seriesList.sort((a, b) => a.seriesNumber - b.seriesNumber);
sortStudySeries(study.seriesList, seriesSortingCriteria);
study.seriesList.forEach(series => {
series.instances.sort((a, b) => a.instanceNumber - b.instanceNumber);
});
if (deepSort) {
study.seriesList.forEach(series => {
sortStudyInstances(series.instances, instancesSortingCriteria);
});
}
return study;
}
export { sortStudySeries, sortStudyInstances, sortingCriteria };
+3
View File
@@ -11,6 +11,7 @@ import writeScript from './writeScript.js';
import DicomLoaderService from './dicomLoaderService.js';
import b64toBlob from './b64toBlob.js';
import * as urlUtil from './urlUtil';
import makeCancelable from './makeCancelable';
const utils = {
guid,
@@ -27,6 +28,7 @@ const utils = {
DICOMTagDescriptions,
DicomLoaderService,
urlUtil,
makeCancelable,
};
export {
@@ -44,6 +46,7 @@ export {
DICOMTagDescriptions,
DicomLoaderService,
urlUtil,
makeCancelable,
};
export default utils;
+1
View File
@@ -17,6 +17,7 @@ describe('Top level exports', () => {
'DICOMTagDescriptions',
'DicomLoaderService',
'urlUtil',
'makeCancelable',
].sort();
const exports = Object.keys(utils.default).sort();
+19
View File
@@ -0,0 +1,19 @@
export default function makeCancelable(thenable) {
let isCanceled = false;
const promise = Promise.resolve(thenable).then(
function(result) {
if (isCanceled) throw Object.freeze({ isCanceled });
return result;
},
function(error) {
if (isCanceled) throw Object.freeze({ isCanceled, error });
throw error;
}
);
return Object.assign(Object.create(promise), {
then: promise.then.bind(promise),
cancel() {
isCanceled = true;
},
});
}
+11
View File
@@ -3,6 +3,17 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [0.52.0](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.51.0...@ohif/i18n@0.52.0) (2019-11-06)
### Features
* modal provider ([#1151](https://github.com/OHIF/Viewers/issues/1151)) ([75d88bc](https://github.com/OHIF/Viewers/commit/75d88bc454710d2dcdbc7d68c4d9df041159c840)), closes [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1146](https://github.com/OHIF/Viewers/issues/1146) [#1142](https://github.com/OHIF/Viewers/issues/1142) [#1143](https://github.com/OHIF/Viewers/issues/1143) [#1110](https://github.com/OHIF/Viewers/issues/1110) [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1119](https://github.com/OHIF/Viewers/issues/1119)
# [0.51.0](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.50.5...@ohif/i18n@0.51.0) (2019-10-15)
+1 -1
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/i18n",
"version": "0.51.0",
"version": "0.52.0",
"description": "Internationalization library for The OHIF Viewer",
"author": "OHIF",
"license": "MIT",
+11 -11
View File
@@ -1,13 +1,13 @@
import AboutModal from "./AboutModal.json";
import Buttons from "./Buttons.json";
import CineDialog from "./CineDialog.json";
import Common from "./Common.json";
import Header from "./Header.json";
import MeasurementTable from "./MeasurementTable.json";
import StudyList from "./StudyList.json";
import UserPreferencesModal from "./UserPreferencesModal.json";
import AboutModal from './AboutModal.json';
import Buttons from './Buttons.json';
import CineDialog from './CineDialog.json';
import Common from './Common.json';
import Header from './Header.json';
import MeasurementTable from './MeasurementTable.json';
import StudyList from './StudyList.json';
import UserPreferencesModal from './UserPreferencesModal.json';
export default {
export default {
'en-US': {
AboutModal,
Buttons,
@@ -17,5 +17,5 @@ export default {
MeasurementTable,
StudyList,
UserPreferencesModal,
}
};
},
};
+9 -9
View File
@@ -1,11 +1,11 @@
import AboutModal from "./AboutModal.json";
import Buttons from "./Buttons.json";
import CineDialog from "./CineDialog.json";
import Common from "./Common.json";
import Header from "./Header.json";
import UserPreferencesModal from "./UserPreferencesModal.json";
import AboutModal from './AboutModal.json';
import Buttons from './Buttons.json';
import CineDialog from './CineDialog.json';
import Common from './Common.json';
import Header from './Header.json';
import UserPreferencesModal from './UserPreferencesModal.json';
export default {
export default {
'pt-BR': {
AboutModal,
Buttons,
@@ -13,5 +13,5 @@ export default {
Common,
Header,
UserPreferencesModal,
}
};
},
};
+44
View File
@@ -3,6 +3,50 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [0.60.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.59.1...@ohif/ui@0.60.0) (2019-11-06)
### Features
* modal provider ([#1151](https://github.com/OHIF/Viewers/issues/1151)) ([75d88bc](https://github.com/OHIF/Viewers/commit/75d88bc454710d2dcdbc7d68c4d9df041159c840)), closes [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1146](https://github.com/OHIF/Viewers/issues/1146) [#1142](https://github.com/OHIF/Viewers/issues/1142) [#1143](https://github.com/OHIF/Viewers/issues/1143) [#1110](https://github.com/OHIF/Viewers/issues/1110) [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1119](https://github.com/OHIF/Viewers/issues/1119)
## [0.59.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.59.0...@ohif/ui@0.59.1) (2019-11-05)
### Bug Fixes
* [#1075](https://github.com/OHIF/Viewers/issues/1075) Returning to the Study List before all series have finishe… ([#1090](https://github.com/OHIF/Viewers/issues/1090)) ([ecaf578](https://github.com/OHIF/Viewers/commit/ecaf578f92dc40294cec7ff9b272fb432dec4125))
# [0.59.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.58.5...@ohif/ui@0.59.0) (2019-11-04)
### Features
* 🎸 New modal provider ([#1110](https://github.com/OHIF/Viewers/issues/1110)) ([5ee832b](https://github.com/OHIF/Viewers/commit/5ee832b19505a4e8e5756660ce6ed03a7f18dec3)), closes [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116)
## [0.58.5](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.58.4...@ohif/ui@0.58.5) (2019-11-04)
### Bug Fixes
* 🐛 Minor issues measurement panel related to description ([#1142](https://github.com/OHIF/Viewers/issues/1142)) ([681384b](https://github.com/OHIF/Viewers/commit/681384b7425c83b02a0ed83371ca92d78ca7838c))
## [0.58.4](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.58.3...@ohif/ui@0.58.4) (2019-10-31)
+1 -1
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/ui",
"version": "0.58.4",
"version": "0.60.0",
"description": "A set of React components for Medical Imaging Viewers",
"author": "OHIF Contributors",
"license": "MIT",
@@ -0,0 +1,107 @@
import React from 'react';
import detect from 'browser-detect';
import { useTranslation } from 'react-i18next';
import './AboutContent.styl';
const AboutContent = () => {
const { t } = useTranslation('AboutContent');
const { os, version, name } = detect();
const capitalize = s =>
s.substr(0, 1).toUpperCase() + s.substr(1).toLowerCase();
const itemsPreset = () => {
return [
{
name: t('Repository URL'),
value: 'https://github.com/OHIF/Viewers/',
link: 'https://github.com/OHIF/Viewers/',
},
{
name: t('Latest Master Commits'),
value: 'https://github.com/OHIF/Viewers/commits/master',
link: 'https://github.com/OHIF/Viewers/commits/master',
},
{
name: 'Version Number',
value: process.env.VERSION_NUMBER,
},
{
name: t('Build Number'),
value: process.env.BUILD_NUM,
},
{
name: t('Browser'),
value: `${capitalize(name)} ${version}`,
},
{
name: t('OS'),
value: os,
},
];
};
const renderTableRow = ({ name, value, link }) => (
<tr key={name} style={{ backgroundColor: 'transparent' }}>
<td>{name}</td>
<td>
{link ? (
<a target="_blank" rel="noopener noreferrer" href={link}>
{value}
</a>
) : (
value
)}
</td>
</tr>
);
return (
<div data-cy="about-modal">
<div className="btn-group">
<a
className="btn btn-default"
target="_blank"
rel="noopener noreferrer"
href="https://groups.google.com/forum/#!forum/cornerstone-platform"
>
{t('Visit the forum')}
</a>
{` `}
<a
className="btn btn-default"
target="_blank"
rel="noopener noreferrer"
href="https://github.com/OHIF/Viewers/issues/new/choose"
>
{t('Report an issue')}
</a>
{` `}
<a
className="btn btn-default"
target="_blank"
rel="noopener noreferrer"
href="http://ohif.org"
>
{t('More details')}
</a>
</div>
<div>
<h3>{t('Version Information')}</h3>
<table className="table table-responsive">
<thead>
<tr>
<th>{t('Name')}</th>
<th>{t('Value')}</th>
</tr>
</thead>
<tbody>{itemsPreset().map(item => renderTableRow(item))}</tbody>
</table>
</div>
</div>
);
};
export { AboutContent };
export default AboutContent;
@@ -1,7 +1,7 @@
@import './../../design/styles/common/button.styl'
@import './../../design/styles/common/table.styl'
@import '../../../design/styles/common/button.styl'
@import '../../../design/styles/common/table.styl'
.AboutModal
.AboutContent
.btn
border-color: #ccc;
@@ -1,10 +1,9 @@
import React, { useEffect, useState, createRef } from 'react';
import Modal from 'react-bootstrap-modal';
import PropTypes from 'prop-types';
import { useTranslation } from 'react-i18next';
import './DownloadDialog.styl';
import './ViewportDownloadForm.styl';
import { TextInput, Select } from '@ohif/ui';
import { withTranslation } from '../../utils/LanguageProvider';
const FILE_TYPE_OPTIONS = [
{
@@ -19,9 +18,7 @@ const FILE_TYPE_OPTIONS = [
const DEFAULT_FILENAME = 'image';
const DownloadDialog = ({
t,
isOpen,
const ViewportDownloadForm = ({
activeViewport,
onClose,
updateViewportPreview,
@@ -35,6 +32,8 @@ const DownloadDialog = ({
maximumSize,
canvasClass,
}) => {
const [t] = useTranslation('ViewportDownloadForm');
const [filename, setFilename] = useState(DEFAULT_FILENAME);
const [fileType, setFileType] = useState('jpg');
@@ -190,142 +189,127 @@ const DownloadDialog = ({
};
return (
<Modal
show={isOpen}
onHide={onClose}
aria-labelledby="ModalHeader"
className="DownloadDialog modal fade themed in"
backdrop={false}
large={true}
keyboard={true}
>
<Modal.Header closeButton>
<Modal.Title>{t('Download High Quality Image')}</Modal.Title>
</Modal.Header>
<Modal.Body>
<div className="title">
{t(
'Please specify the dimensions, filename, and desired type for the output image.'
)}
</div>
<>
<div className="title">
{t(
'Please specify the dimensions, filename, and desired type for the output image.'
)}
</div>
<div className="file-info-container">
<div className="col">
<div className="width">
<TextInput
type="number"
min={minimumSize}
max={maximumSize}
value={width}
label={t('Image width (px)')}
onChange={onWidthChange}
/>
</div>
<div className="height">
<TextInput
type="number"
min={minimumSize}
max={maximumSize}
value={height}
label={t('Image height (px)')}
onChange={onHeightChange}
/>
</div>
<div className="file-info-container">
<div className="col">
<div className="width">
<TextInput
type="number"
min={minimumSize}
max={maximumSize}
value={width}
label={t('Image width (px)')}
onChange={onWidthChange}
/>
</div>
<div className="col">
<div className="file-name">
<TextInput
type="text"
value={filename}
onChange={event => setFilename(event.target.value)}
label={t('File name')}
id="file-name"
/>
</div>
<div className="file-type">
<Select
value={fileType}
onChange={event => setFileType(event.target.value)}
options={FILE_TYPE_OPTIONS}
label={t('File type')}
/>
</div>
</div>
<div className="col">
<div className="show-annotations">
<label htmlFor="show-annotations" className="form-check-label">
<input
id="show-annotations"
type="checkbox"
className="form-check-input"
checked={showAnnotations}
onChange={event => setShowAnnotations(event.target.checked)}
/>
{t('Show Annotations')}
</label>
</div>
<div className="height">
<TextInput
type="number"
min={minimumSize}
max={maximumSize}
value={height}
label={t('Image height (px)')}
onChange={onHeightChange}
/>
</div>
</div>
<div
<div className="col">
<div className="file-name">
<TextInput
type="text"
value={filename}
onChange={event => setFilename(event.target.value)}
label={t('File name')}
id="file-name"
/>
</div>
<div className="file-type">
<Select
value={fileType}
onChange={event => setFileType(event.target.value)}
options={FILE_TYPE_OPTIONS}
label={t('File type')}
/>
</div>
</div>
<div className="col">
<div className="show-annotations">
<label htmlFor="show-annotations" className="form-check-label">
<input
id="show-annotations"
type="checkbox"
className="form-check-input"
checked={showAnnotations}
onChange={event => setShowAnnotations(event.target.checked)}
/>
{t('Show Annotations')}
</label>
</div>
</div>
</div>
<div
style={{
height: viewportElementHeight,
width: viewportElementWidth,
position: 'absolute',
left: '9999px',
}}
ref={ref => setViewportElement(ref)}
>
<canvas
className={canvasClass}
style={{
height: viewportElementHeight,
width: viewportElementWidth,
position: 'absolute',
left: '9999px',
height: downloadCanvas.height,
width: downloadCanvas.width,
display: 'block',
}}
ref={ref => setViewportElement(ref)}
>
<canvas
className={canvasClass}
style={{
height: downloadCanvas.height,
width: downloadCanvas.width,
display: 'block',
}}
width={downloadCanvas.width}
height={downloadCanvas.height}
ref={downloadCanvas.ref}
></canvas>
</div>
width={downloadCanvas.width}
height={downloadCanvas.height}
ref={downloadCanvas.ref}
></canvas>
</div>
<div className="preview">
<h4> {t('Image Preview')}</h4>
<img
className="viewport-preview"
src={viewportPreview.src}
alt="Viewport Preview"
style={{
height: viewportPreview.height,
width: viewportPreview.width,
}}
/>
</div>
<div className="preview">
<h4> {t('Image Preview')}</h4>
<img
className="viewport-preview"
src={viewportPreview.src}
alt="Viewport Preview"
style={{
height: viewportPreview.height,
width: viewportPreview.width,
}}
/>
</div>
<div className="actions">
<div className="action-cancel">
<button type="button" className="btn btn-danger" onClick={onClose}>
{t('Cancel')}
</button>
</div>
<div className="action-save">
<button onClick={downloadImage} className="btn btn-primary">
{t('Download')}
</button>
</div>
<div className="actions">
<div className="action-cancel">
<button type="button" className="btn btn-danger" onClick={onClose}>
{t('Cancel')}
</button>
</div>
</Modal.Body>
</Modal>
<div className="action-save">
<button onClick={downloadImage} className="btn btn-primary">
{t('Download')}
</button>
</div>
</div>
</>
);
};
DownloadDialog.propTypes = {
t: PropTypes.func.isRequired,
isOpen: PropTypes.bool.isRequired,
activeViewport: PropTypes.object,
ViewportDownloadForm.propTypes = {
onClose: PropTypes.func.isRequired,
activeViewport: PropTypes.object,
updateViewportPreview: PropTypes.func.isRequired,
enableViewport: PropTypes.func.isRequired,
disableViewport: PropTypes.func.isRequired,
@@ -338,4 +322,4 @@ DownloadDialog.propTypes = {
canvasClass: PropTypes.string.isRequired,
};
export default withTranslation('DownloadDialog')(DownloadDialog);
export default ViewportDownloadForm;
@@ -1,8 +1,8 @@
@import './../../design/styles/common/global.styl'
@import './../../design/styles/common/form.styl'
@import './../../design/styles/common/button.styl'
@import '../../../design/styles/common/global.styl'
@import '../../../design/styles/common/form.styl'
@import '../../../design/styles/common/button.styl'
.DownloadDialog
.ViewportDownloadForm
color: var(--text-secondary-color);
filter: drop-shadow(0 0 3px var(--ui-gray-darkest));
border: none;
@@ -0,0 +1,39 @@
---
name: Viewport Download Form
menu: Components
route: /components/viewport-download-form
---
import { Playground, Props } from 'docz'
import { State } from 'react-powerplug'
import { ViewportDownloadForm } from './../index'
import NameSpace from '../../../__docs__/NameSpace'
# Viewport Download Form
## Basic usage
<Playground>
<State
initial={{}}
>
{({ state, setState }) => (
<React.Fragment>
<div>
<pre>{JSON.stringify(state, null, 2)}</pre>
</div>
<div style={{ maxWidth: '400px', margin: '0 auto' }}>
<ViewportDownloadForm />
</div>
</React.Fragment>
)}
</State>
</Playground>
## API
<Props of={ViewportDownloadForm} />
## Translation Namespace
<NameSpace name="ViewportDownloadForm" />
@@ -0,0 +1,2 @@
import ViewportDownloadForm from './ViewportDownloadForm';
export { ViewportDownloadForm };
@@ -1,2 +0,0 @@
import DownloadDialog from './DownloadDialog';
export { DownloadDialog };
+6 -4
View File
@@ -4,18 +4,19 @@ import { MeasurementTable, MeasurementTableItem } from './measurementTable';
import { Overlay, OverlayTrigger } from './overlayTrigger';
import { TableList, TableListItem } from './tableList';
import {
AboutModal,
AboutContent,
UserPreferences,
UserPreferencesModal,
} from './userPreferencesModal';
import { Checkbox } from './checkbox';
import { CineDialog } from './cineDialog';
import { DownloadDialog } from './downloadDialog';
import { ViewportDownloadForm } from './content/viewportDownloadForm';
import { QuickSwitch } from './quickSwitch';
import { RoundedButtonGroup } from './roundedButtonGroup';
import { SelectTree } from './selectTree';
import { SimpleDialog } from './simpleDialog';
import { OHIFModal } from './ohifModal';
import {
PageToolbar,
StudyList,
@@ -28,7 +29,7 @@ import { Tooltip } from './tooltip';
export {
Checkbox,
CineDialog,
DownloadDialog,
ViewportDownloadForm,
LayoutButton,
LayoutChooser,
MeasurementTable,
@@ -49,7 +50,8 @@ export {
TablePagination,
ToolbarSection,
Tooltip,
AboutModal,
AboutContent,
UserPreferences,
UserPreferencesModal,
OHIFModal,
};
@@ -30,6 +30,11 @@
.measurementLocation
margin-left: 9px;
margin-top: 9px;
overflow: hidden;
max-width: calc(100% - 50px);
text-overflow: ellipsis;
overflow-wrap: normal;
white-space: nowrap;
.measurementDisplayText
display: inline-block;
@@ -0,0 +1,60 @@
import React from 'react';
import PropTypes from 'prop-types';
import ReactBootstrapModal from 'react-bootstrap-modal';
import classNames from 'classnames';
const OHIFModal = ({
className,
closeButton,
backdrop,
keyboard,
show,
title,
onHide,
footer: Footer,
header: Header,
children: Component,
}) => (
<ReactBootstrapModal
className={classNames('modal fade themed in', className)}
backdrop={backdrop}
keyboard={keyboard}
show={show}
large={true}
title={title}
onHide={onHide}
>
{(Header || title) && (
<ReactBootstrapModal.Header closeButton={closeButton}>
{title && (
<ReactBootstrapModal.Title>{title}</ReactBootstrapModal.Title>
)}
{Header && <Header hide={onHide} />}
</ReactBootstrapModal.Header>
)}
<ReactBootstrapModal.Body>
{Component && <Component hide={onHide} />}
</ReactBootstrapModal.Body>
{Footer && (
<ReactBootstrapModal.Footer>
{' '}
<Footer hide={onHide} />
</ReactBootstrapModal.Footer>
)}
</ReactBootstrapModal>
);
OHIFModal.propTypes = {
className: PropTypes.string,
closeButton: PropTypes.bool,
backdrop: PropTypes.bool,
keyboard: PropTypes.bool,
show: PropTypes.bool,
title: PropTypes.string,
onHide: PropTypes.func,
footer: PropTypes.node,
header: PropTypes.node,
children: PropTypes.node,
};
export default OHIFModal;
@@ -1,15 +1,15 @@
---
name: Download Dialog
name: OHIFModal
menu: Components
route: /components/download-dialog
route: /components/ohif-modal
---
import { Playground, Props } from 'docz'
import { State } from 'react-powerplug'
import { DownloadDialog } from './../index'
import { OHIFModal } from './../index'
import NameSpace from '../../../__docs__/NameSpace'
# Download Dialog
# OHIF Modal
## Basic usage
@@ -23,7 +23,7 @@ import NameSpace from '../../../__docs__/NameSpace'
<pre>{JSON.stringify(state, null, 2)}</pre>
</div>
<div style={{ maxWidth: '400px', margin: '0 auto' }}>
<DownloadDialog />
<OHIFModal />
</div>
</React.Fragment>
)}
@@ -32,8 +32,8 @@ import NameSpace from '../../../__docs__/NameSpace'
## API
<Props of={DownloadDialog} />
<Props of={OHIFModal} />
## Translation Namespace
<NameSpace name="DownloadDialog" />
<NameSpace name="OHIFModal" />
@@ -0,0 +1,2 @@
import OHIFModal from './OHIFModal';
export { OHIFModal };
@@ -1,6 +1,7 @@
/* global cornerstone */
import './ImageThumbnail.styl';
import { utils } from '@ohif/core';
import React, { PureComponent } from 'react';
import PropTypes from 'prop-types';
@@ -32,7 +33,7 @@ export default class ImageThumbnail extends PureComponent {
constructor(props) {
super(props);
this.cancelablePromises = [];
this.canvas = React.createRef();
this.state = {
loading: this.shouldRenderToCanvas(),
@@ -43,10 +44,17 @@ export default class ImageThumbnail extends PureComponent {
return this.props.imageId && !this.props.imageSrc;
}
fetchImage() {
const cancelablePromise = utils.makeCancelable(
cornerstone.loadAndCacheImage(this.props.imageId)
);
this.cancelablePromises.push(cancelablePromise);
return cancelablePromise;
}
componentDidMount() {
if (this.shouldRenderToCanvas()) {
cornerstone
.loadAndCacheImage(this.props.imageId)
this.fetchImage()
.then(image => {
cornerstone.renderToCanvas(this.canvas.current, image);
this.setState({
@@ -54,6 +62,7 @@ export default class ImageThumbnail extends PureComponent {
});
})
.catch(error => {
if (error.isCanceled) return;
this.setState({
loading: false,
error: true,
@@ -63,6 +72,12 @@ export default class ImageThumbnail extends PureComponent {
}
}
componentWillUnmount() {
while (this.cancelablePromises.length > 0) {
this.cancelablePromises.pop().cancel();
}
}
render() {
let loadingOrError;
if (this.props.error) {
@@ -38,6 +38,7 @@
.itemContent
flex: 1
color: var(--text-secondary-color)
width: calc(100% - 30px);
font-weight: 400
margin-left: 9px;
margin-top: 9px;
@@ -1,143 +0,0 @@
import React, { Component } from 'react';
import PropTypes from 'prop-types';
import Modal from 'react-bootstrap-modal';
import detect from 'browser-detect';
import './AboutModal.styl';
import { withTranslation } from '../../utils/LanguageProvider';
import 'react-bootstrap-modal/lib/css/rbm-patch.css';
// TODO: Is this the only component importing these?
import './../../design/styles/common/modal.styl';
class AboutModal extends Component {
constructor(props) {
super(props);
}
// TODO: Make this component more generic to allow things other than W/L and hotkeys...
static propTypes = {
isOpen: PropTypes.bool.isRequired,
onCancel: PropTypes.func,
};
itemsPreset() {
const { t } = this.props;
const browser = detect();
const capitalize = s =>
s.substr(0, 1).toUpperCase() + s.substr(1).toLowerCase();
return [
{
name: t('Repository URL'),
value: 'https://github.com/OHIF/Viewers/',
link: 'https://github.com/OHIF/Viewers/',
},
{
name: t('Latest Master Commits'),
value: 'https://github.com/OHIF/Viewers/commits/master',
link: 'https://github.com/OHIF/Viewers/commits/master',
},
{
name: 'Version Number',
value: process.env.VERSION_NUMBER,
},
{
name: t('Build Number'),
value: process.env.BUILD_NUM,
},
{
name: t('Browser'),
value: `${capitalize(browser.name)} ${browser.version}`,
},
{
name: t('OS'),
value: browser.os,
},
];
}
static defaultProps = {
isOpen: false,
};
renderTableRow(item) {
return (
<tr key={item.name} style={{ backgroundColor: 'transparent' }}>
<td>{item.name}</td>
<td>
{item.link ? (
<a target="_blank" href={item.link}>
{item.value}
</a>
) : (
item.value
)}
</td>
</tr>
);
}
render() {
const { t } = this.props;
return (
<Modal
show={this.props.isOpen}
onHide={this.props.onCancel}
aria-labelledby="ModalHeader"
className="AboutModal modal fade themed in"
backdrop={false}
large={true}
keyboard={false}
>
<Modal.Header closeButton>
<Modal.Title>{t('OHIF Viewer - About')}</Modal.Title>
</Modal.Header>
<Modal.Body data-cy="about-modal">
<div className="btn-group">
<a
className="btn btn-default"
target="_blank"
href="https://groups.google.com/forum/#!forum/cornerstone-platform"
>
{t('Visit the forum')}
</a>
{` `}
<a
className="btn btn-default"
target="_blank"
href="https://github.com/OHIF/Viewers/issues/new/choose"
>
{t('Report an issue')}
</a>
{` `}
<a
className="btn btn-default"
target="_blank"
href="http://ohif.org"
>
{t('More details')}
</a>
</div>
<div>
<h3>{t('Version Information')}</h3>
<table className="table table-responsive">
<thead>
<tr>
<th>{t('Name')}</th>
<th>{t('Value')}</th>
</tr>
</thead>
<tbody>
{this.itemsPreset().map(item => this.renderTableRow(item))}
</tbody>
</table>
</div>
</Modal.Body>
</Modal>
);
}
}
const connectedComponent = withTranslation('AboutModal')(AboutModal);
export { connectedComponent as AboutModal };
export default connectedComponent;
@@ -6,7 +6,7 @@ route: /components/about-modal
import { Playground, Props } from 'docz'
import { State } from 'react-powerplug'
import { AboutModal } from './../index.js'
import { AboutContent } from './../index.js'
# About Modal
@@ -26,7 +26,7 @@ import { AboutModal } from './../index.js'
>
Open about modal
</button>
<AboutModal
<AboutContent
{...state}
onCancel={() => setState({ isOpen: false })}
/>
@@ -39,4 +39,4 @@ import { AboutModal } from './../index.js'
## API
<Props of={AboutModal} />
<Props of={AboutContent} />
@@ -60,11 +60,6 @@ export default {
keys: [''],
column: 1,
},
toggleDownloadDialog: {
label: 'Show/Hide Download Dialog',
keys: [''],
column: 1,
},
// Preset hotkeys
WLPreset0: { label: 'W/L Preset 0 (Soft Tissue)', keys: ['1'], column: 1 },
@@ -1,4 +1,4 @@
export { UserPreferences } from './UserPreferences.js';
export { AboutModal } from './AboutModal.js';
export { AboutContent } from '../content/aboutContent/AboutContent.js';
export { UserPreferencesModal } from './UserPreferencesModal.js';
export { GeneralPreferences } from './GeneralPreferences.js';
+15 -4
View File
@@ -1,7 +1,7 @@
import {
Checkbox,
CineDialog,
DownloadDialog,
ViewportDownloadForm,
LayoutButton,
LayoutChooser,
MeasurementTable,
@@ -22,9 +22,10 @@ import {
TablePagination,
ToolbarSection,
Tooltip,
AboutModal,
AboutContent,
UserPreferences,
UserPreferencesModal,
OHIFModal,
} from './components';
import { useDebounce, useMedia } from './hooks';
@@ -52,6 +53,11 @@ import SnackbarProvider, {
useSnackbarContext,
withSnackbar,
} from './utils/SnackbarProvider';
import ModalProvider, {
useModal,
withModal,
ModalConsumer,
} from './utils/ModalProvider';
export {
// Elements
@@ -63,7 +69,7 @@ export {
TextArea,
TextInput,
CineDialog,
DownloadDialog,
ViewportDownloadForm,
ExpandableToolMenu,
Icon,
LayoutButton,
@@ -93,13 +99,18 @@ export {
ToolbarButton,
ToolbarSection,
Tooltip,
AboutModal,
AboutContent,
UserPreferences,
UserPreferencesModal,
ViewerbaseDragDropContext,
SnackbarProvider,
useSnackbarContext,
withSnackbar,
ModalProvider,
useModal,
ModalConsumer,
withModal,
OHIFModal,
// Hooks
useDebounce,
useMedia,
+83
View File
@@ -0,0 +1,83 @@
import React, { useState, createContext, useContext } from 'react';
import PropTypes from 'prop-types';
import classNames from 'classnames';
const ModalContext = createContext(null);
const { Provider, Consumer } = ModalContext;
export const useModal = () => useContext(ModalContext);
const ModalProvider = ({ children, modal: Modal }) => {
const DEFAULT_OPTIONS = {
component: null /* The component instance inside the modal. */,
backdrop: false /* Should the modal render a backdrop overlay. */,
keyboard: false /* Modal is dismissible via the esc key. */,
show: true /* Make the Modal visible or hidden. */,
closeButton: true /* Should the modal body render the close button. */,
title: null /* Should the modal render the title independently of the body content. */,
customClassName: null /* The custom class to style the modal. */,
};
const [options, setOptions] = useState(DEFAULT_OPTIONS);
/**
* Show the modal and override its configuration props.
*
* @returns void
*/
const show = (component, props = {}) =>
setOptions(Object.assign({}, options, props, { component }));
/**
* Hide the modal and set its properties to default.
*
* @returns void
*/
const hide = () => setOptions(DEFAULT_OPTIONS);
return (
<Provider value={{ ...options, show, hide }}>
<Consumer>
{props => {
const { component, footer, header, customClassName } = props;
return component ? (
<Modal
className={classNames(customClassName, component.className)}
backdrop={options.backdrop}
keyboard={options.keyboard}
show={options.show}
title={options.title}
closeButton={options.closeButton}
onHide={hide}
footer={footer}
header={header}
>
{component}
</Modal>
) : null;
}}
</Consumer>
{children}
</Provider>
);
};
ModalProvider.propTypes = {
children: PropTypes.node,
modal: PropTypes.node,
};
/**
* Higher Order Component to use the modal methods through a Class Component.
*
* @returns
*/
export const withModal = Component => {
return function WrappedComponent(props) {
return <Component {...props} modalContext={{ ...useModal() }} />;
};
};
export default ModalProvider;
export const ModalConsumer = ModalContext.Consumer;
+72
View File
@@ -3,6 +3,78 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [2.6.0](https://github.com/OHIF/Viewers/compare/@ohif/viewer@2.5.0...@ohif/viewer@2.6.0) (2019-11-06)
### Features
* modal provider ([#1151](https://github.com/OHIF/Viewers/issues/1151)) ([75d88bc](https://github.com/OHIF/Viewers/commit/75d88bc454710d2dcdbc7d68c4d9df041159c840)), closes [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1146](https://github.com/OHIF/Viewers/issues/1146) [#1142](https://github.com/OHIF/Viewers/issues/1142) [#1143](https://github.com/OHIF/Viewers/issues/1143) [#1110](https://github.com/OHIF/Viewers/issues/1110) [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1119](https://github.com/OHIF/Viewers/issues/1119)
# [2.5.0](https://github.com/OHIF/Viewers/compare/@ohif/viewer@2.4.1...@ohif/viewer@2.5.0) (2019-11-05)
### Features
* 🎸 Filter by url query param for seriesInstnaceUID ([#1117](https://github.com/OHIF/Viewers/issues/1117)) ([e208f2e](https://github.com/OHIF/Viewers/commit/e208f2e6a9c49b16dadead0a917f657cf023929a)), closes [#1118](https://github.com/OHIF/Viewers/issues/1118)
## [2.4.1](https://github.com/OHIF/Viewers/compare/@ohif/viewer@2.4.0...@ohif/viewer@2.4.1) (2019-11-05)
### Bug Fixes
* [#1075](https://github.com/OHIF/Viewers/issues/1075) Returning to the Study List before all series have finishe… ([#1090](https://github.com/OHIF/Viewers/issues/1090)) ([ecaf578](https://github.com/OHIF/Viewers/commit/ecaf578f92dc40294cec7ff9b272fb432dec4125))
# [2.4.0](https://github.com/OHIF/Viewers/compare/@ohif/viewer@2.3.8...@ohif/viewer@2.4.0) (2019-11-04)
### Features
* 🎸 New modal provider ([#1110](https://github.com/OHIF/Viewers/issues/1110)) ([5ee832b](https://github.com/OHIF/Viewers/commit/5ee832b19505a4e8e5756660ce6ed03a7f18dec3)), closes [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116)
## [2.3.8](https://github.com/OHIF/Viewers/compare/@ohif/viewer@2.3.7...@ohif/viewer@2.3.8) (2019-11-04)
**Note:** Version bump only for package @ohif/viewer
## [2.3.7](https://github.com/OHIF/Viewers/compare/@ohif/viewer@2.3.6...@ohif/viewer@2.3.7) (2019-11-04)
### Bug Fixes
* 🐛 Minor issues measurement panel related to description ([#1142](https://github.com/OHIF/Viewers/issues/1142)) ([681384b](https://github.com/OHIF/Viewers/commit/681384b7425c83b02a0ed83371ca92d78ca7838c))
## [2.3.6](https://github.com/OHIF/Viewers/compare/@ohif/viewer@2.3.5...@ohif/viewer@2.3.6) (2019-11-02)
**Note:** Version bump only for package @ohif/viewer
## [2.3.5](https://github.com/OHIF/Viewers/compare/@ohif/viewer@2.3.4...@ohif/viewer@2.3.5) (2019-10-31)
@@ -393,6 +393,20 @@ describe('OHIF Cornerstone Toolbar', () => {
});
});
it('checks if the available viewport was set to active when layout is decreased', () => {
cy.setLayout(3, 3);
// activate the ninth viewport
cy.get('[data-cy=viewport-container-8]')
.click()
.should('have.class', 'active');
cy.setLayout(1, 1);
// first viewport should be active
cy.get('[data-cy=viewport-container-0]').should('have.class', 'active');
});
it('checks if Clear tool will delete all measurements added in the viewport', () => {
//Add measurements in the viewport
cy.addLengthMeasurement();
+5 -5
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/viewer",
"version": "2.3.5",
"version": "2.6.0",
"description": "OHIF Viewer",
"author": "OHIF Contributors",
"license": "MIT",
@@ -45,14 +45,14 @@
},
"dependencies": {
"@babel/runtime": "^7.5.5",
"@ohif/core": "^1.6.1",
"@ohif/core": "^1.7.0",
"@ohif/extension-cornerstone": "^2.0.0",
"@ohif/extension-dicom-html": "^1.0.1",
"@ohif/extension-dicom-microscopy": "^0.50.6",
"@ohif/extension-dicom-pdf": "^1.0.0",
"@ohif/extension-vtk": "^0.52.27",
"@ohif/i18n": "^0.51.0",
"@ohif/ui": "^0.58.4",
"@ohif/extension-vtk": "^0.53.0",
"@ohif/i18n": "^0.52.0",
"@ohif/ui": "^0.60.0",
"@tanem/react-nprogress": "^1.1.25",
"classnames": "^2.2.6",
"core-js": "^3.2.1",
+12 -9
View File
@@ -28,7 +28,7 @@ import { BrowserRouter as Router } from 'react-router-dom';
import { getActiveContexts } from './store/layout/selectors.js';
import i18n from '@ohif/i18n';
import store from './store';
import { SnackbarProvider } from '@ohif/ui';
import { SnackbarProvider, ModalProvider, OHIFModal } from '@ohif/ui';
// Contexts
import WhiteLabellingContext from './context/WhiteLabellingContext';
@@ -85,6 +85,7 @@ class App extends Component {
}
render() {
const { whiteLabelling, routerBasename } = this.props;
const userManager = this._userManager;
const config = {
appConfig: this._appConfig,
@@ -97,12 +98,12 @@ class App extends Component {
<I18nextProvider i18n={i18n}>
<OidcProvider store={store} userManager={userManager}>
<UserManagerContext.Provider value={userManager}>
<Router basename={this.props.routerBasename}>
<WhiteLabellingContext.Provider
value={this.props.whiteLabelling}
>
<Router basename={routerBasename}>
<WhiteLabellingContext.Provider value={whiteLabelling}>
<SnackbarProvider>
<OHIFStandaloneViewer userManager={userManager} />
<ModalProvider modal={OHIFModal}>
<OHIFStandaloneViewer userManager={userManager} />
</ModalProvider>
</SnackbarProvider>
</WhiteLabellingContext.Provider>
</Router>
@@ -118,10 +119,12 @@ class App extends Component {
<AppContext.Provider value={config}>
<Provider store={store}>
<I18nextProvider i18n={i18n}>
<Router basename={this.props.routerBasename}>
<WhiteLabellingContext.Provider value={this.props.whiteLabelling}>
<Router basename={routerBasename}>
<WhiteLabellingContext.Provider value={whiteLabelling}>
<SnackbarProvider>
<OHIFStandaloneViewer />
<ModalProvider modal={OHIFModal}>
<OHIFStandaloneViewer />
</ModalProvider>
</SnackbarProvider>
</WhiteLabellingContext.Provider>
</Router>
@@ -31,7 +31,7 @@ function getAllTools() {
function getMeasurementText(measurementData = {}) {
const defaultText = '...';
const { location = '', description = '' } = measurementData;
const result = location + (description ? `(${description})` : '');
const result = location + (description ? ` (${description})` : '');
return result || defaultText;
}
@@ -105,9 +105,9 @@ function getToolLabellingFlowCallback(store) {
if (location) {
measurementData.location = location;
}
if (description) {
measurementData.description = description;
}
measurementData.description = description || '';
if (response) {
measurementData.response = response;
}
+33 -36
View File
@@ -1,15 +1,15 @@
import './Header.css';
import { Link, withRouter } from 'react-router-dom';
import React, { Component } from 'react';
import { Link, withRouter } from 'react-router-dom';
import { withTranslation } from 'react-i18next';
import PropTypes from 'prop-types';
import { Dropdown } from '@ohif/ui';
import OHIFLogo from '../OHIFLogo/OHIFLogo.js';
import PropTypes from 'prop-types';
import { AboutModal } from '@ohif/ui';
import { hotkeysManager } from './../../App.js';
import { withTranslation } from 'react-i18next';
import { AboutContent } from '@ohif/ui';
import { withModal } from '@ohif/ui';
import OHIFLogo from '../OHIFLogo/OHIFLogo.js';
import { hotkeysManager } from './../../App.js';
import './Header.css';
// Context
import AppContext from './../../context/AppContext';
@@ -21,6 +21,8 @@ class Header extends Component {
children: PropTypes.node,
t: PropTypes.func.isRequired,
userManager: PropTypes.object,
user: PropTypes.object,
modalContext: PropTypes.object,
};
static defaultProps = {
@@ -50,26 +52,29 @@ class Header extends Component {
}
loadOptions() {
const { t } = this.props;
const {
t,
user,
userManager,
modalContext: { show },
} = this.props;
this.options = [
{
title: t('About'),
icon: { name: 'info' },
onClick: () => {
this.setState({
isOpen: true,
});
},
onClick: () =>
show(AboutContent, {
title: t('OHIF Viewer - About'),
customClassName: 'AboutContent',
}),
},
];
if (this.props.user && this.props.userManager) {
if (user && userManager) {
this.options.push({
title: t('Logout'),
icon: { name: 'power-off' },
onClick: () => {
this.props.userManager.signoutRedirect();
},
onClick: () => userManager.signoutRedirect(),
});
}
@@ -85,32 +90,32 @@ class Header extends Component {
// ANTD -- Hamburger, Drawer, Menu
render() {
const { t } = this.props;
const { t, home, location, children } = this.props;
const { appConfig = {} } = this.context;
const showStudyList =
appConfig.showStudyList !== undefined ? appConfig.showStudyList : true;
return (
<>
<div className="notification-bar">{t('INVESTIGATIONAL USE ONLY')}</div>
<div className={`entry-header ${this.props.home ? 'header-big' : ''}`}>
<div className={`entry-header ${home ? 'header-big' : ''}`}>
<div className="header-left-box">
{this.props.location && this.props.location.studyLink && (
{location && location.studyLink && (
<Link
to={this.props.location.studyLink}
to={location.studyLink}
className="header-btn header-viewerLink"
>
{t('Back to Viewer')}
</Link>
)}
{this.props.children}
{children}
{showStudyList && !this.props.home && (
{showStudyList && !home && (
<Link
className="header-btn header-studyListLinkSection"
to={{
pathname: '/',
state: { studyLink: this.props.location.pathname },
state: { studyLink: location.pathname },
}}
>
{t('Study list')}
@@ -123,16 +128,6 @@ class Header extends Component {
{t('INVESTIGATIONAL USE ONLY')}
</span>
<Dropdown title={t('Options')} list={this.options} align="right" />
{/* TODO: We need a Modal service */}
<AboutModal
{...this.state}
onCancel={() =>
this.setState({
isOpen: false,
})
}
/>
</div>
</div>
</>
@@ -140,4 +135,6 @@ class Header extends Component {
}
}
export default withTranslation('Header')(withRouter(Header));
export default withTranslation(['Header', 'AboutModal'])(
withRouter(withModal(Header))
);
@@ -152,6 +152,7 @@ export default class LabellingFlow extends Component {
ref={this.descriptionInput}
defaultValue={description || ''}
autoComplete="off"
onKeyPress={this.handleKeyPress}
/>
</div>
</div>
@@ -223,6 +224,12 @@ export default class LabellingFlow extends Component {
});
};
handleKeyPress = e => {
if (e.key === 'Enter') {
this.descriptionSave();
}
};
descriptionSave = () => {
const description = this.descriptionInput.current.value;
this.props.updateLabelling({ description });
@@ -35,6 +35,7 @@ const ViewportPane = function(props) {
propClassName
)}
ref={drop}
data-cy={`viewport-container-${viewportIndex}`}
>
{children}
</div>
@@ -1,5 +1,5 @@
import { connect } from 'react-redux';
import { DownloadDialog } from '@ohif/ui';
import { ViewportDownloadForm } from '@ohif/ui';
import { utils } from '@ohif/core';
import cornerstone from 'cornerstone-core';
import cornerstoneTools from 'cornerstone-tools';
@@ -14,11 +14,11 @@ const mapStateToProps = (state, ownProps) => {
viewportSpecificData[activeViewportIndex] || {};
return {
onClose: ownProps.hide,
minimumSize: MINIMUM_SIZE,
maximumSize: MAX_TEXTURE_SIZE,
defaultSize: DEFAULT_SIZE,
canvasClass: 'cornerstone-canvas',
onClose: ownProps.toggleDownloadDialog,
activeViewport: activeEnabledElement,
enableViewport: viewportElement => {
if (viewportElement) {
@@ -122,9 +122,9 @@ const mapStateToProps = (state, ownProps) => {
};
};
const ConnectedDownloadDialog = connect(
const ConnectedViewportDownloadForm = connect(
mapStateToProps,
null
)(DownloadDialog);
)(ViewportDownloadForm);
export default ConnectedDownloadDialog;
export default ConnectedViewportDownloadForm;
@@ -6,17 +6,17 @@ import {
ExpandableToolMenu,
RoundedButtonGroup,
ToolbarButton,
withModal,
} from '@ohif/ui';
import './ToolbarRow.css';
import { commandsManager, extensionManager } from './../App.js';
import ConnectedCineDialog from './ConnectedCineDialog';
import ConnectedDownloadDialog from './ConnectedDownloadDialog';
import ConnectedViewportDownloadForm from './ConnectedViewportDownloadForm';
import ConnectedLayoutButton from './ConnectedLayoutButton';
import ConnectedPluginSwitch from './ConnectedPluginSwitch.js';
class ToolbarRow extends Component {
// TODO: Simplify these? isOpen can be computed if we say "any" value for selected,
// closed if selected is null/undefined
@@ -46,13 +46,10 @@ class ToolbarRow extends Component {
toolbarButtons: toolbarButtonDefinitions,
activeButtons: [],
isCineDialogOpen: false,
isDownloadScreenShotDialogOpen: false,
};
this._handleBuiltIn = _handleBuiltIn.bind(this);
this.toggleDownloadDialog = toggleDownloadDialog.bind(this);
const panelModules = extensionManager.modules[MODULE_TYPES.PANEL];
this.buttonGroups = {
left: [
@@ -116,13 +113,6 @@ class ToolbarRow extends Component {
zIndex: 999,
};
const downloadScreenShotContainerStyle = {
display: this.state.isDownloadScreenShotDialogOpen ? 'block' : 'none',
position: 'absolute',
top: '82px',
zIndex: 1001,
};
const onPress = (side, value) => {
this.props.handleSidePanelChange(side, value);
};
@@ -158,12 +148,6 @@ class ToolbarRow extends Component {
<div className="CineDialogContainer" style={cineDialogContainerStyle}>
<ConnectedCineDialog />
</div>
<div className="DownloadScreenShotContainer" style={downloadScreenShotContainerStyle}>
<ConnectedDownloadDialog
isOpen={this.state.isDownloadScreenShotDialogOpen}
toggleDownloadDialog={this.toggleDownloadDialog}
/>
</div>
</>
);
}
@@ -295,15 +279,6 @@ function _getVisibleToolbarButtons() {
return toolbarButtonDefinitions;
}
/**
* Toggles the Download Dialog Modal
*/
function toggleDownloadDialog() {
this.setState({
isDownloadScreenShotDialogOpen: !this.state.isDownloadScreenShotDialogOpen,
});
}
function _handleBuiltIn({ behavior } = {}) {
if (behavior === 'CINE') {
this.setState({
@@ -312,8 +287,13 @@ function _handleBuiltIn({ behavior } = {}) {
}
if (behavior === 'DOWNLOAD_SCREEN_SHOT') {
this.toggleDownloadDialog();
this.props.modalContext.show(ConnectedViewportDownloadForm, {
title: this.props.t('Download High Quality Image'),
customClassName: 'ViewportDownloadForm',
});
}
}
export default withTranslation('Common')(ToolbarRow);
export default withTranslation(['Common', 'ViewportDownloadForm'])(
withModal(ToolbarRow)
);
@@ -4,9 +4,10 @@ import { metadata, studies, utils, log } from '@ohif/core';
import ConnectedViewer from './ConnectedViewer.js';
import PropTypes from 'prop-types';
import { extensionManager } from './../App.js';
import { withSnackbar } from '@ohif/ui';
const { OHIFStudyMetadata, OHIFSeriesMetadata } = metadata;
const { retrieveStudiesMetadata } = studies;
const { retrieveStudiesMetadata, deleteStudyMetadataPromise } = studies;
const { studyMetadataManager, updateMetaDataManager } = utils;
class ViewerRetrieveStudyData extends Component {
@@ -18,6 +19,8 @@ class ViewerRetrieveStudyData extends Component {
constructor(props) {
super(props);
this.abortSeriesLoad = false;
this.seriesLoadStats = Object.create(null);
this.state = {
studies: null,
error: null,
@@ -27,11 +30,21 @@ class ViewerRetrieveStudyData extends Component {
async loadStudies() {
try {
const { server, studyInstanceUids, seriesInstanceUids } = this.props;
const filters = {};
// Use the first, discard others
const seriesInstanceUID = seriesInstanceUids && seriesInstanceUids[0];
if (seriesInstanceUID) {
filters.seriesInstanceUID = seriesInstanceUID;
}
const studies = await retrieveStudiesMetadata(
server,
studyInstanceUids,
seriesInstanceUids
filters
);
this.validateFilters(studies, filters);
this.setStudies(studies);
} catch (e) {
this.setState({ error: true });
@@ -39,6 +52,32 @@ class ViewerRetrieveStudyData extends Component {
}
}
/**
* Validate filters and promp user a message in case filter is unsuccessfully applied.
* In case of success, studies array contains, as the first element, the queried content (from filter)
* @param {Array} studies array of studies to be evaluated
* @param {Object} filters filters to test against
*/
validateFilters(studies = [], filters = {}) {
const { seriesInstanceUID } = filters;
const { snackbarContext } = this.props;
// skip in case no filter or no toast manager
if (!seriesInstanceUID || !snackbarContext) {
return;
}
const firstStudy = studies[0] || {};
const { seriesList = [] } = firstStudy;
const firstSeries = seriesList[0];
if (!firstSeries || firstSeries.seriesInstanceUid !== seriesInstanceUID) {
snackbarContext.show({
message: 'No series for given filter: ' + seriesInstanceUID,
});
}
}
setStudies(givenStudies) {
if (Array.isArray(givenStudies) && givenStudies.length > 0) {
const sopClassHandlerModules =
@@ -83,18 +122,49 @@ class ViewerRetrieveStudyData extends Component {
});
}
_handleSeriesLoadResult(error, studyMetadata, series) {
if (this.abortSeriesLoad) return;
const stats = this.seriesLoadStats[studyMetadata.getStudyInstanceUID()];
if (!stats) return;
stats.count--;
if (error || !series) {
stats.errors++;
log.error(error || 'Bad Series');
return;
}
this._addSeriesToStudy(studyMetadata, series);
}
_attemptToLoadRemainingSeries(studyMetadata) {
const { seriesLoader } = studyMetadata.getData();
if (!seriesLoader) {
return;
}
const stats = (this.seriesLoadStats[studyMetadata.getStudyInstanceUID()] = {
errors: 0,
count: 0,
});
while (seriesLoader.hasNext()) {
seriesLoader
.next()
.then(
series => void this._addSeriesToStudy(studyMetadata, series),
error => void log.error(error)
series =>
void this._handleSeriesLoadResult(null, studyMetadata, series),
error => void this._handleSeriesLoadResult({ error }, null, null)
);
stats.count++;
}
}
componentWillUnmount() {
this.abortSeriesLoad = true;
for (const studyInstanceUid in this.seriesLoadStats) {
const stats = this.seriesLoadStats[studyInstanceUid];
if (stats && (stats.count > 0 || stats.errors > 0)) {
deleteStudyMetadataPromise(studyInstanceUid);
studyMetadataManager.remove(studyInstanceUid);
log.info(`Purging incomplete study data: ${studyInstanceUid}`);
}
}
}
@@ -118,4 +188,4 @@ class ViewerRetrieveStudyData extends Component {
}
}
export default ViewerRetrieveStudyData;
export default withSnackbar(ViewerRetrieveStudyData);
+10 -10
View File
@@ -7,15 +7,15 @@ const { urlUtil: UrlUtil } = OHIF.utils;
/**
* Get array of seriesUIDs from param or from queryString
* @param {*} seriesInstanceUIDs
* @param {*} seriesInstanceUids
* @param {*} location
*/
const getSeriesInstanceUIDs = (seriesInstanceUIDs, routeLocation) => {
const getSeriesInstanceUIDs = (seriesInstanceUids, routeLocation) => {
const queryFilters = UrlUtil.queryString.getQueryFilters(routeLocation);
const querySeriesUIDs = queryFilters && queryFilters['SeriesInstanceUID'];
const _seriesInstanceUIDs = seriesInstanceUIDs || querySeriesUIDs;
const querySeriesUIDs = queryFilters && queryFilters['seriesInstanceUID'];
const _seriesInstanceUids = seriesInstanceUids || querySeriesUIDs;
return UrlUtil.paramString.parseParam(_seriesInstanceUIDs);
return UrlUtil.paramString.parseParam(_seriesInstanceUids);
};
function ViewerRouting({ match: routeMatch, location: routeLocation }) {
@@ -29,14 +29,14 @@ function ViewerRouting({ match: routeMatch, location: routeLocation }) {
} = routeMatch.params;
const server = useServer({ project, location, dataset, dicomStore });
const studyUIDs = UrlUtil.paramString.parseParam(studyInstanceUids);
const seriesUIDs = getSeriesInstanceUIDs(seriesInstanceUids, routeLocation);
const studyUids = UrlUtil.paramString.parseParam(studyInstanceUids);
const seriesUids = getSeriesInstanceUIDs(seriesInstanceUids, routeLocation);
if (server && studyUIDs) {
if (server && studyUids) {
return (
<ConnectedViewerRetrieveStudyData
studyInstanceUids={studyUIDs}
seriesInstanceUids={seriesUIDs}
studyInstanceUids={studyUids}
seriesInstanceUids={seriesUids}
/>
);
}
+12 -12
View File
@@ -6929,7 +6929,7 @@ direction@^1.0.1, direction@^1.0.2:
resolved "https://registry.yarnpkg.com/direction/-/direction-1.0.3.tgz#5030e1e091e923904067d015dbaafd08f4d27d26"
integrity sha512-8bHRqMt4w/kND19KBksE4NOJo+gIOPuiZfxQvbd6xikfKbuNBYBdLIw0hA/4lWzBaDpwpW+Olmg1BjD9+0LU2w==
dnd-core@^9.3.4, dnd-core@^9.4.0:
dnd-core@^9.4.0:
version "9.4.0"
resolved "https://registry.yarnpkg.com/dnd-core/-/dnd-core-9.4.0.tgz#ccf605d36887f18cdde8fd5576ca3145d2e69fa8"
integrity sha512-Kg+8VwU8s7TgdR/BUYGUHrvFiS+5ePMZ0Q0XD7p+cFVJvgKqykBaeQDuaziuauFMPm8QxtnUy8Pncey9flXW3Q==
@@ -15920,14 +15920,14 @@ react-dev-utils@^9.0.1:
strip-ansi "5.2.0"
text-table "0.2.0"
react-dnd-html5-backend@^9.3.4:
react-dnd-html5-backend@^9.4.0:
version "9.4.0"
resolved "https://registry.yarnpkg.com/react-dnd-html5-backend/-/react-dnd-html5-backend-9.4.0.tgz#5b1d192f57d103298657cde1fe0eabdbf2726311"
integrity sha512-gehPwLp505F6RoFkQiDX7Q4mbpbyfyT0TbIoZop/m4vkBw6yUE/QLrnxBQdNpDPSwL/9XkZxxd/PrbeMCQ+WrQ==
dependencies:
dnd-core "^9.4.0"
react-dnd-touch-backend@^9.3.4:
react-dnd-touch-backend@^9.4.0:
version "9.4.0"
resolved "https://registry.yarnpkg.com/react-dnd-touch-backend/-/react-dnd-touch-backend-9.4.0.tgz#6784e71fad0904723e33e6710caafe36c62192a4"
integrity sha512-yJjFhgslriSTIEXQ/Q5MrLnETJaoyRct+AsJ//e96WOH2pUNMGSxkl8RIb/IMhNysVnMc8frLIyT8dQxXAcmGA==
@@ -15936,14 +15936,14 @@ react-dnd-touch-backend@^9.3.4:
dnd-core "^9.4.0"
invariant "^2.2.4"
react-dnd@9.3.4:
version "9.3.4"
resolved "https://registry.yarnpkg.com/react-dnd/-/react-dnd-9.3.4.tgz#ebab4b5b430b72f3580c058a29298054e1f9d2b8"
integrity sha512-UUtyoHFRrryMxVMEGYa3EdZIdibnys/ax7ZRs6CKpETHlnJQOFhHE3rpI+ManvKS0o3MFc1DZ+aoudAFtrOvFA==
react-dnd@9.4.0:
version "9.4.0"
resolved "https://registry.yarnpkg.com/react-dnd/-/react-dnd-9.4.0.tgz#eec87035c6360fb33a44932326b3369af011a41c"
integrity sha512-jnLF8qKowCKTqSddfCiLx5+sb+HxO1qgdiAgbBeL8yuo5tRYNtKxZYn7+wVwNoyZuWEuM1Gw/Wsdhr+yb2RELQ==
dependencies:
"@types/hoist-non-react-statics" "^3.3.1"
"@types/shallowequal" "^1.1.1"
dnd-core "^9.3.4"
dnd-core "^9.4.0"
hoist-non-react-statics "^3.3.0"
shallowequal "^1.1.0"
@@ -16221,10 +16221,10 @@ react-transition-group@^4.1.1:
loose-envify "^1.4.0"
prop-types "^15.6.2"
react-vtkjs-viewport@^0.3.7:
version "0.3.7"
resolved "https://registry.yarnpkg.com/react-vtkjs-viewport/-/react-vtkjs-viewport-0.3.7.tgz#a71eb09a88586b2b96c40f7e8fe2db56b693d613"
integrity sha512-hPaTIAJCgrdsegU96OdDRSKBDoRXbg0x72x/CCTR+6vMaXry4CnoMNMVtNJ3eCa29j6bKytiE7VkPBBEcoG+IQ==
react-vtkjs-viewport@^0.3.9:
version "0.3.9"
resolved "https://registry.yarnpkg.com/react-vtkjs-viewport/-/react-vtkjs-viewport-0.3.9.tgz#dc3dd5323c4cbaf5978cd64af2794b6b4ed61642"
integrity sha512-Sc3dRRz8tRSdUrdgL8tuYwVEl0CTjaZfDLqP5ufMXH2KjwBt3T5bjpk4xvzFyPc9CG6ywEX5MSa6eQ+NNjaUkw==
dependencies:
date-fns "^2.2.1"
gl-matrix "^3.1.0"