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Author SHA1 Message Date
ohif-bot 73bc4d9094 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.0
 - @ohif/viewer@1.4.1
2019-10-03 14:05:24 +00:00
James Petts 7709ebb107 Merge pull request #993 from JamesAPetts/vtkViewportSubscriptionManager
feat: 🎸 Synced Window Leveling
2019-10-03 15:49:19 +02:00
James A. Petts 559b637290 feat: 🎸 Synced Window Leveling
Syncs window leveling for vtkjs viewports in MPR 2D mode.

Closes: #558
2019-10-03 15:29:56 +02:00
ohif-bot 36910f2b47 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.51.3
 - @ohif/core@1.1.0
 - @ohif/ui@0.53.0
 - @ohif/viewer@1.4.0
2019-10-03 08:02:00 +00:00
Emanuel Fiuza de Oliveira 9e10c2b2de feat: Use QIDO + WADO to load series metadata individually rather than the entire study metadata at once (#953) 2019-10-03 09:51:29 +02:00
ohif-bot c5cbd77cb9 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.51.2
 - @ohif/core@1.0.2
 - @ohif/viewer@1.3.3
2019-10-02 07:49:25 +00:00
Erik Ziegler b3b4c10e4c fix: Temporarily sort SEG files to the end of the display set list as a workaround for several metadata issues (#987) 2019-10-02 09:39:38 +02:00
24 changed files with 863 additions and 439 deletions

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+27
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@@ -3,6 +3,33 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [0.52.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.3...@ohif/extension-vtk@0.52.0) (2019-10-03)
### Features
* 🎸 Synced Window Leveling ([559b637](https://github.com/OHIF/Viewers/commit/559b637)), closes [#558](https://github.com/OHIF/Viewers/issues/558)
## [0.51.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.2...@ohif/extension-vtk@0.51.3) (2019-10-03)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.51.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.1...@ohif/extension-vtk@0.51.2) (2019-10-02)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.51.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.0...@ohif/extension-vtk@0.51.1) (2019-10-01)
+3 -3
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@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-vtk",
"version": "0.51.1",
"version": "0.52.0",
"description": "OHIF extension for VTK.js",
"author": "OHIF",
"license": "MIT",
@@ -51,8 +51,8 @@
"react-vtkjs-viewport": "0.1.2"
},
"devDependencies": {
"@ohif/core": "^1.0.1",
"@ohif/ui": "^0.52.0",
"@ohif/core": "^1.1.0",
"@ohif/ui": "^0.53.0",
"cornerstone-tools": "^4.0.9",
"cornerstone-wado-image-loader": "^3.0.0",
"dcmjs": "^0.6.1",
+44 -32
View File
@@ -1,16 +1,17 @@
import React, { Component } from "react";
import { getImageData, loadImageData } from "react-vtkjs-viewport";
import React, { Component } from 'react';
import { getImageData, loadImageData } from 'react-vtkjs-viewport';
import ConnectedVTKViewport from "./ConnectedVTKViewport";
import LoadingIndicator from "./LoadingIndicator.js";
import OHIF from "@ohif/core";
import PropTypes from "prop-types";
import cornerstone from "cornerstone-core";
import handleSegmentationStorage from "./handleSegmentationStorage.js";
import vtkDataArray from "vtk.js/Sources/Common/Core/DataArray";
import vtkImageData from "vtk.js/Sources/Common/DataModel/ImageData";
import vtkVolume from "vtk.js/Sources/Rendering/Core/Volume";
import vtkVolumeMapper from "vtk.js/Sources/Rendering/Core/VolumeMapper";
import ConnectedVTKViewport from './ConnectedVTKViewport';
import LoadingIndicator from './LoadingIndicator.js';
import OHIF from '@ohif/core';
import PropTypes from 'prop-types';
import cornerstone from 'cornerstone-core';
import handleSegmentationStorage from './handleSegmentationStorage.js';
import vtkDataArray from 'vtk.js/Sources/Common/Core/DataArray';
import vtkImageData from 'vtk.js/Sources/Common/DataModel/ImageData';
import vtkVolume from 'vtk.js/Sources/Rendering/Core/Volume';
import vtkVolumeMapper from 'vtk.js/Sources/Rendering/Core/VolumeMapper';
import vtkViewportSubscriptionManager from './utils/vtkViewportSubscriptionManager.js';
const { StackManager } = OHIF.utils;
@@ -24,7 +25,7 @@ cornerstone.metaData.addProvider(
StackManager.setMetadataProvider(metadataProvider);
const SOP_CLASSES = {
SEGMENTATION_STORAGE: "1.2.840.10008.5.1.4.1.1.66.4"
SEGMENTATION_STORAGE: '1.2.840.10008.5.1.4.1.1.66.4',
};
const specialCaseHandlers = {};
@@ -42,7 +43,7 @@ const volumeCache = {};
*/
function createLabelMapImageData(backgroundImageData) {
const labelMapData = vtkImageData.newInstance(
backgroundImageData.get("spacing", "origin", "direction")
backgroundImageData.get('spacing', 'origin', 'direction')
);
labelMapData.setDimensions(backgroundImageData.getDimensions());
labelMapData.computeTransforms();
@@ -50,7 +51,7 @@ function createLabelMapImageData(backgroundImageData) {
const values = new Uint8Array(backgroundImageData.getNumberOfPoints());
const dataArray = vtkDataArray.newInstance({
numberOfComponents: 1, // labelmap with single component
values
values,
});
labelMapData.getPointData().setScalars(dataArray);
@@ -61,24 +62,24 @@ class OHIFVTKViewport extends Component {
state = {
volumes: null,
paintFilterLabelMapImageData: null,
paintFilterBackgroundImageData: null
paintFilterBackgroundImageData: null,
};
static propTypes = {
studies: PropTypes.object,
displaySet: PropTypes.object,
viewportIndex: PropTypes.number,
children: PropTypes.node
children: PropTypes.node,
};
static id = "OHIFVTKViewport";
static id = 'OHIFVTKViewport';
static init() {
console.log("OHIFVTKViewport init()");
console.log('OHIFVTKViewport init()');
}
static destroy() {
console.log("OHIFVTKViewport destroy()");
console.log('OHIFVTKViewport destroy()');
StackManager.clearStacks();
}
@@ -109,7 +110,7 @@ class OHIFVTKViewport extends Component {
} else if (sopInstanceUid) {
const index = stack.imageIds.findIndex(imageId => {
const sopCommonModule = cornerstone.metaData.get(
"sopCommonModule",
'sopCommonModule',
imageId
);
if (!sopCommonModule) {
@@ -151,7 +152,7 @@ class OHIFVTKViewport extends Component {
switch (sopClassUid) {
case SOP_CLASSES.SEGMENTATION_STORAGE:
throw new Error("Not yet implemented");
throw new Error('Not yet implemented');
const data = handleSegmentationStorage(
stack.imageIds,
@@ -164,7 +165,7 @@ class OHIFVTKViewport extends Component {
return loadImageData(imageDataObject).then(() => {
return {
data: imageDataObject.vtkImageData,
labelmap: labelmapDataObject
labelmap: labelmapDataObject,
};
});
default:
@@ -172,7 +173,7 @@ class OHIFVTKViewport extends Component {
return loadImageData(imageDataObject).then(() => {
return {
data: imageDataObject.vtkImageData
data: imageDataObject.vtkImageData,
};
});
}
@@ -189,10 +190,16 @@ class OHIFVTKViewport extends Component {
volumeActor.setMapper(volumeMapper);
volumeMapper.setInputData(data);
const range = data.getPointData().getScalars().getRange();
const range = data
.getPointData()
.getScalars()
.getRange();
// TODO: For PET we might want to just set this to 0-5 SUV
volumeActor.getProperty().getRGBTransferFunction(0).setRange(range[0], range[1]);
volumeActor
.getProperty()
.getRGBTransferFunction(0)
.setRange(range[0], range[1]);
// TODO: Should look into implementing autoAdjustSampleDistance in vtk
const sampleDistance =
@@ -200,7 +207,7 @@ class OHIFVTKViewport extends Component {
Math.sqrt(
data
.getSpacing()
.map((v) => v * v)
.map(v => v * v)
.reduce((a, b) => a + b, 0)
);
@@ -218,12 +225,12 @@ class OHIFVTKViewport extends Component {
displaySetInstanceUid,
sopClassUids,
sopInstanceUid,
frameIndex
frameIndex,
} = displaySet;
if (sopClassUids.length > 1) {
console.warn(
"More than one SOPClassUid in the same series is not yet supported."
'More than one SOPClassUid in the same series is not yet supported.'
);
}
@@ -249,7 +256,7 @@ class OHIFVTKViewport extends Component {
this.setState({
volumes: [volumeActor],
paintFilterBackgroundImageData: data,
paintFilterLabelMapImageData: labelmap
paintFilterLabelMapImageData: labelmap,
});
}
@@ -257,6 +264,11 @@ class OHIFVTKViewport extends Component {
this.setStateFromProps();
}
componentWillUnmount() {
console.log(this.props.viewportIndex);
vtkViewportSubscriptionManager.unsubscribe(this.props.viewportIndex);
}
componentDidUpdate(prevProps) {
const { studies, displaySet } = this.props.viewportData;
const prevDisplaySet = prevProps.viewportData.displaySet;
@@ -279,12 +291,12 @@ class OHIFVTKViewport extends Component {
childrenWithProps = this.props.children.map((child, index) => {
return React.cloneElement(child, {
viewportIndex: this.props.viewportIndex,
key: index
key: index,
});
});
}
const style = { width: "100%", height: "100%", position: "relative" };
const style = { width: '100%', height: '100%', position: 'relative' };
return (
<>
+7 -3
View File
@@ -9,6 +9,7 @@ import {
import setMPRLayout from './utils/setMPRLayout.js';
import setViewportToVTK from './utils/setViewportToVTK.js';
import vtkViewportSubscriptionManager from './utils/vtkViewportSubscriptionManager.js';
import vtkCoordinate from 'vtk.js/Sources/Rendering/Core/Coordinate';
import vtkMath from 'vtk.js/Sources/Common/Core/Math';
import vtkMatrixBuilder from 'vtk.js/Sources/Common/Core/MatrixBuilder';
@@ -263,16 +264,19 @@ const actions = {
apis = apiByViewport;
/*const rgbTransferFunction = apiByViewport[0].volumes[0]
const rgbTransferFunction = apiByViewport[0].volumes[0]
.getProperty()
.getRGBTransferFunction(0);
rgbTransferFunction.onModified(() => {
const onModifiedSubscription = rgbTransferFunction.onModified(() => {
apiByViewport.forEach(a => {
const renderWindow = a.genericRenderWindow.getRenderWindow();
renderWindow.render();
});
});*/
});
vtkViewportSubscriptionManager.pushSubscription(0, onModifiedSubscription);
apiByViewport.forEach((api, index) => {
const renderWindow = api.genericRenderWindow.getRenderWindow();
@@ -0,0 +1,28 @@
const subscriptions = [];
// This is pretty hacky right now, but it makes sure we don't keep adding subscriptions.
// TODO -> Nuke this and move it up a layer once we have more vigorous layout support.
const vtkViewportSubscriptionManager = {
subscriptions,
pushSubscription(viewportIndex, subscription) {
if (!Array.isArray(subscriptions[viewportIndex])) {
subscriptions[viewportIndex] = [];
}
subscriptions[viewportIndex].push(subscription);
},
unsubscribe(viewportIndex) {
if (!subscriptions[viewportIndex]) {
return;
}
while (subscriptions[viewportIndex].length) {
subscriptions[viewportIndex].pop().unsubscribe();
}
subscriptions[viewportIndex] = null;
},
};
export default vtkViewportSubscriptionManager;
+22
View File
@@ -3,6 +3,28 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [1.1.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.0.2...@ohif/core@1.1.0) (2019-10-03)
### Features
* Use QIDO + WADO to load series metadata individually rather than the entire study metadata at once ([#953](https://github.com/OHIF/Viewers/issues/953)) ([9e10c2b](https://github.com/OHIF/Viewers/commit/9e10c2b))
## [1.0.2](https://github.com/OHIF/Viewers/compare/@ohif/core@1.0.1...@ohif/core@1.0.2) (2019-10-02)
### Bug Fixes
* Temporarily sort SEG files to the end of the display set list as a workaround for several metadata issues ([#987](https://github.com/OHIF/Viewers/issues/987)) ([b3b4c10](https://github.com/OHIF/Viewers/commit/b3b4c10))
## [1.0.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.0.0...@ohif/core@1.0.1) (2019-09-27)
+1 -1
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/core",
"version": "1.0.1",
"version": "1.1.0",
"description": "Generic business logic for web-based medical imaging applications",
"author": "OHIF Core Team",
"license": "MIT",
@@ -1,10 +1,12 @@
// import { api } from 'dicomweb-client'
const api = {
DICOMwebClient: jest.fn().mockImplementation(() => {
return {
retrieveStudyMetadata: jest.fn().mockResolvedValue([]),
};
DICOMwebClient: jest.fn().mockImplementation(function() {
this.retrieveStudyMetadata = jest.fn().mockResolvedValue([]);
this.retrieveSeriesMetadata = jest.fn(function(options) {
const { studyInstanceUID, seriesInstanceUID } = options;
return Promise.resolve([{ studyInstanceUID, seriesInstanceUID }]);
});
}),
};
@@ -8,7 +8,8 @@ import { SeriesMetadata } from './SeriesMetadata';
// - createStacks
import { api } from 'dicomweb-client';
// - createStacks
import { isImage } from './../../utils/isImage';
import { isImage } from '../../utils/isImage';
import isLowPriorityModality from '../../utils/isLowPriorityModality';
export class StudyMetadata extends Metadata {
constructor(data, uid) {
@@ -88,6 +89,100 @@ export class StudyMetadata extends Metadata {
return this._displaySets.slice();
}
/**
* Split a series metadata object into display sets
* @param {Array} sopClassHandlerModules List of SOP Class Modules
* @param {SeriesMetadata} series The series metadata object from which the display sets will be created
* @param {Array} [givenDisplaySets] An optional list to which the display sets will be appended
* @returns {Array} The list of display sets created for the given series object
*/
_createDisplaySetsForSeries(
sopClassHandlerModules,
series,
givenDisplaySets
) {
const study = this;
const displaySets = Array.isArray(givenDisplaySets) ? givenDisplaySets : [];
const anyInstances = series.getInstanceCount() > 0;
if (!anyInstances) {
return;
}
const sopClassUids = getSopClassUids(series);
if (sopClassHandlerModules && sopClassHandlerModules.length > 0) {
const displaySet = _getDisplaySetFromSopClassModule(
sopClassHandlerModules,
series,
study,
sopClassUids
);
if (displaySet) {
displaySet.sopClassModule = true;
displaySets.push(displaySet);
return;
}
}
// WE NEED A BETTER WAY TO NOTE THAT THIS IS THE DEFAULT BEHAVIOR FOR LOADING
// A DISPLAY SET IF THERE IS NO MATCHING SOP CLASS PLUGIN
// Search through the instances (InstanceMetadata object) of this series
// Split Multi-frame instances and Single-image modalities
// into their own specific display sets. Place the rest of each
// series into another display set.
const stackableInstances = [];
series.forEachInstance(instance => {
// All imaging modalities must have a valid value for sopClassUid (x00080016) or rows (x00280010)
if (
!isImage(instance.getRawValue('x00080016')) &&
!instance.getRawValue('x00280010')
) {
return;
}
let displaySet;
if (isMultiFrame(instance)) {
displaySet = makeDisplaySet(series, [instance]);
displaySet.setAttributes({
sopClassUids,
isClip: true,
seriesInstanceUid: series.getSeriesInstanceUID(),
studyInstanceUid: study.getStudyInstanceUID(), // Include the study instance Uid for drag/drop purposes
numImageFrames: instance.getRawValue('x00280008'), // Override the default value of instances.length
instanceNumber: instance.getRawValue('x00200013'), // Include the instance number
acquisitionDatetime: instance.getRawValue('x0008002a'), // Include the acquisition datetime
});
displaySets.push(displaySet);
} else if (isSingleImageModality(instance.modality)) {
displaySet = makeDisplaySet(series, [instance]);
displaySet.setAttributes({
sopClassUids,
studyInstanceUid: study.getStudyInstanceUID(), // Include the study instance Uid
seriesInstanceUid: series.getSeriesInstanceUID(),
instanceNumber: instance.getRawValue('x00200013'), // Include the instance number
acquisitionDatetime: instance.getRawValue('x0008002a'), // Include the acquisition datetime
});
displaySets.push(displaySet);
} else {
stackableInstances.push(instance);
}
});
if (stackableInstances.length) {
const displaySet = makeDisplaySet(series, stackableInstances);
displaySet.setAttribute('studyInstanceUid', study.getStudyInstanceUID());
displaySet.setAttributes({
sopClassUids,
});
displaySets.push(displaySet);
}
return displaySets;
}
/**
* Creates a set of series to be placed in the Study Metadata
* The series that appear in the Study Metadata must represent
@@ -101,104 +196,44 @@ export class StudyMetadata extends Metadata {
* @returns {Array} An array of series to be placed in the Study Metadata
*/
createDisplaySets(sopClassHandlerModules) {
const study = this;
const displaySets = [];
const anyDisplaySets = study.getSeriesCount();
const anySopClassHandlerModules =
sopClassHandlerModules && sopClassHandlerModules.length > 0;
const anyDisplaySets = this.getSeriesCount();
if (!anyDisplaySets) {
return displaySets;
}
// Loop through the series (SeriesMetadata)
this.forEachSeries(series => {
const anyInstances = series.getInstanceCount() > 0;
if (!anyInstances) {
return;
}
const sopClassUids = getSopClassUids(series);
if (anySopClassHandlerModules) {
const displaySet = _getDisplaySetFromSopClassModule(
this.forEachSeries(
series =>
void this._createDisplaySetsForSeries(
sopClassHandlerModules,
series,
study,
sopClassUids
);
displaySets
)
);
if (displaySet) {
displaySet.sopClassModule = true;
displaySets.push(displaySet);
return sortDisplaySetList(displaySets);
}
return;
}
}
sortDisplaySets() {
sortDisplaySetList(this._displaySets);
}
// WE NEED A BETTER WAY TO NOTE THAT THIS IS THE DEFAULT BEHAVIOR FOR LOADING
// A DISPLAY SET IF THERE IS NO MATCHING SOP CLASS PLUGIN
// Search through the instances (InstanceMetadata object) of this series
// Split Multi-frame instances and Single-image modalities
// into their own specific display sets. Place the rest of each
// series into another display set.
const stackableInstances = [];
series.forEachInstance(instance => {
// All imaging modalities must have a valid value for sopClassUid (x00080016) or rows (x00280010)
if (
!isImage(instance.getRawValue('x00080016')) &&
!instance.getRawValue('x00280010')
) {
return;
}
let displaySet;
if (isMultiFrame(instance)) {
displaySet = makeDisplaySet(series, [instance]);
displaySet.setAttributes({
sopClassUids,
isClip: true,
seriesInstanceUid: series.getSeriesInstanceUID(),
studyInstanceUid: study.getStudyInstanceUID(), // Include the study instance Uid for drag/drop purposes
numImageFrames: instance.getRawValue('x00280008'), // Override the default value of instances.length
instanceNumber: instance.getRawValue('x00200013'), // Include the instance number
acquisitionDatetime: instance.getRawValue('x0008002a'), // Include the acquisition datetime
});
displaySets.push(displaySet);
} else if (isSingleImageModality(instance.modality)) {
displaySet = makeDisplaySet(series, [instance]);
displaySet.setAttributes({
sopClassUids,
studyInstanceUid: study.getStudyInstanceUID(), // Include the study instance Uid
seriesInstanceUid: series.getSeriesInstanceUID(),
instanceNumber: instance.getRawValue('x00200013'), // Include the instance number
acquisitionDatetime: instance.getRawValue('x0008002a'), // Include the acquisition datetime
});
displaySets.push(displaySet);
} else {
stackableInstances.push(instance);
}
});
if (stackableInstances.length) {
const displaySet = makeDisplaySet(series, stackableInstances);
displaySet.setAttribute(
'studyInstanceUid',
study.getStudyInstanceUID()
);
displaySet.setAttributes({
sopClassUids,
});
displaySets.push(displaySet);
}
});
// TODO
displaySets.sort(_sortBySeriesNumber);
return displaySets;
/**
* Method to append display sets from a given series to the internal list of display sets
* @param {Array} sopClassHandlerModules A list of SOP Class Handler Modules
* @param {SeriesMetadata} series The series metadata object from which the display sets will be created
* @returns {boolean} Returns true on success or false on failure (e.g., the series does not belong to this study)
*/
createAndAddDisplaySetsForSeries(sopClassHandlerModules, series) {
if (this.containsSeries(series)) {
this.setDisplaySets(
this._createDisplaySetsForSeries(sopClassHandlerModules, series)
);
return true;
}
return false;
}
/**
@@ -206,7 +241,10 @@ export class StudyMetadata extends Metadata {
* @param {Array} displaySets Array of display sets (ImageSet[])
*/
setDisplaySets(displaySets) {
displaySets.forEach(displaySet => this.addDisplaySet(displaySet));
if (Array.isArray(displaySets) && displaySets.length > 0) {
displaySets.forEach(displaySet => this.addDisplaySet(displaySet));
this.sortDisplaySets();
}
}
/**
@@ -320,6 +358,12 @@ export class StudyMetadata extends Metadata {
return found;
}
containsSeries(series) {
return (
series instanceof SeriesMetadata && this._series.indexOf(series) >= 0
);
}
/**
* Retrieve the number of series within the current study.
* @returns {number} The number of series in the current study.
@@ -650,13 +694,51 @@ function _getDisplaySetFromSopClassModule(
}
/**
* Sort series primarily by modality (i.e., series with references to other
* series like SEG, KO or PR are grouped in the end of the list) and then by
* series number:
*
* --------
* | CT #3 |
* | CT #4 |
* | CT #5 |
* --------
* | SEG #1 |
* | SEG #2 |
* --------
*
* @param {*} a - DisplaySet
* @param {*} b - DisplaySet
*/
function _sortBySeriesNumber(a, b) {
function seriesSortingCriteria(a, b) {
const isLowPriorityA = isLowPriorityModality(a.modality);
const isLowPriorityB = isLowPriorityModality(b.modality);
if (!isLowPriorityA && isLowPriorityB) {
return -1;
}
if (isLowPriorityA && !isLowPriorityB) {
return 1;
}
return sortBySeriesNumber(a, b);
}
/**
* Sort series by series number. Series with low
* @param {*} a - DisplaySet
* @param {*} b - DisplaySet
*/
function sortBySeriesNumber(a, b) {
const seriesNumberAIsGreaterOrUndefined =
a.seriesNumber > b.seriesNumber || (!a.seriesNumber && b.seriesNumber);
return seriesNumberAIsGreaterOrUndefined ? 1 : -1;
}
/**
* Sorts a list of display set objects
* @param {Array} list A list of display sets to be sorted
*/
function sortDisplaySetList(list) {
return list.sort(seriesSortingCriteria);
}
@@ -1,5 +1,8 @@
import { api } from 'dicomweb-client';
import DICOMWeb from '../../../DICOMWeb/';
import isLowPriorityModality from '../../../utils/isLowPriorityModality';
const INFO = Symbol('INFO');
const WADOProxy = {
convertURL: (url, server) => {
@@ -94,9 +97,7 @@ function buildInstanceWadoRsUri(
seriesInstanceUid,
sopInstanceUid
) {
return `${
server.wadoRoot
}/studies/${studyInstanceUid}/series/${seriesInstanceUid}/instances/${sopInstanceUid}`;
return `${server.wadoRoot}/studies/${studyInstanceUid}/series/${seriesInstanceUid}/instances/${sopInstanceUid}`;
}
function buildInstanceFrameWadoRsUri(
@@ -166,9 +167,9 @@ function getPaletteColor(server, instance, tag, lutDescriptor) {
};
const arrayBufferToPaletteColorLUT = result => {
const arraybuffer = result[0]
const byteArray = new Uint8Array(arraybuffer)
const lut = []
const arraybuffer = result[0];
const byteArray = new Uint8Array(arraybuffer);
const lut = [];
for (let i = 0; i < numLutEntries; i++) {
if (bits === 16) {
@@ -271,200 +272,338 @@ function getRadiopharmaceuticalInfo(instance) {
};
}
async function makeSOPInstance(server, study, instance) {
const { studyInstanceUid } = study;
const seriesInstanceUid = DICOMWeb.getString(instance['0020000E']);
let series = study.seriesMap[seriesInstanceUid];
if (!series) {
series = {
seriesInstanceUid,
seriesDescription: DICOMWeb.getString(instance['0008103E']),
modality: DICOMWeb.getString(instance['00080060']),
seriesNumber: DICOMWeb.getNumber(instance['00200011']),
seriesDate: DICOMWeb.getString(instance['00080021']),
seriesTime: DICOMWeb.getString(instance['00080031']),
instances: [],
};
study.seriesMap[seriesInstanceUid] = series;
study.seriesList.push(series);
}
const sopInstanceUid = DICOMWeb.getString(instance['00080018']);
const wadouri = buildInstanceWadoUrl(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const baseWadoRsUri = buildInstanceWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const wadorsuri = buildInstanceFrameWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const sopInstance = {
imageType: DICOMWeb.getString(instance['00080008']),
sopClassUid: DICOMWeb.getString(instance['00080016']),
modality: DICOMWeb.getString(instance['00080060']),
sopInstanceUid,
instanceNumber: DICOMWeb.getNumber(instance['00200013']),
imagePositionPatient: DICOMWeb.getString(instance['00200032']),
imageOrientationPatient: DICOMWeb.getString(instance['00200037']),
frameOfReferenceUID: DICOMWeb.getString(instance['00200052']),
sliceLocation: DICOMWeb.getNumber(instance['00201041']),
samplesPerPixel: DICOMWeb.getNumber(instance['00280002']),
photometricInterpretation: DICOMWeb.getString(instance['00280004']),
planarConfiguration: DICOMWeb.getNumber(instance['00280006']),
rows: DICOMWeb.getNumber(instance['00280010']),
columns: DICOMWeb.getNumber(instance['00280011']),
pixelSpacing: DICOMWeb.getString(instance['00280030']),
pixelAspectRatio: DICOMWeb.getString(instance['00280034']),
bitsAllocated: DICOMWeb.getNumber(instance['00280100']),
bitsStored: DICOMWeb.getNumber(instance['00280101']),
highBit: DICOMWeb.getNumber(instance['00280102']),
pixelRepresentation: DICOMWeb.getNumber(instance['00280103']),
smallestPixelValue: DICOMWeb.getNumber(instance['00280106']),
largestPixelValue: DICOMWeb.getNumber(instance['00280107']),
windowCenter: DICOMWeb.getString(instance['00281050']),
windowWidth: DICOMWeb.getString(instance['00281051']),
rescaleIntercept: DICOMWeb.getNumber(instance['00281052']),
rescaleSlope: DICOMWeb.getNumber(instance['00281053']),
rescaleType: DICOMWeb.getNumber(instance['00281054']),
sourceImageInstanceUid: getSourceImageInstanceUid(instance),
laterality: DICOMWeb.getString(instance['00200062']),
viewPosition: DICOMWeb.getString(instance['00185101']),
acquisitionDateTime: DICOMWeb.getString(instance['0008002A']),
numberOfFrames: DICOMWeb.getNumber(instance['00280008']),
frameIncrementPointer: getFrameIncrementPointer(instance['00280009']),
frameTime: DICOMWeb.getNumber(instance['00181063']),
frameTimeVector: parseFloatArray(DICOMWeb.getString(instance['00181065'])),
sliceThickness: DICOMWeb.getNumber(instance['00180050']),
spacingBetweenSlices: DICOMWeb.getString(instance['00180088']),
lossyImageCompression: DICOMWeb.getString(instance['00282110']),
derivationDescription: DICOMWeb.getString(instance['00282111']),
lossyImageCompressionRatio: DICOMWeb.getString(instance['00282112']),
lossyImageCompressionMethod: DICOMWeb.getString(instance['00282114']),
echoNumber: DICOMWeb.getString(instance['00180086']),
contrastBolusAgent: DICOMWeb.getString(instance['00180010']),
radiopharmaceuticalInfo: getRadiopharmaceuticalInfo(instance),
baseWadoRsUri: baseWadoRsUri,
wadouri: WADOProxy.convertURL(wadouri, server),
wadorsuri: WADOProxy.convertURL(wadorsuri, server),
wadoRoot: server.wadoRoot,
imageRendering: server.imageRendering,
thumbnailRendering: server.thumbnailRendering,
};
// Get additional information if the instance uses "PALETTE COLOR" photometric interpretation
if (sopInstance.photometricInterpretation === 'PALETTE COLOR') {
const redPaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281101'])
);
const greenPaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281102'])
);
const bluePaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281103'])
);
const palettes = await getPaletteColors(
server,
instance,
redPaletteColorLookupTableDescriptor
);
if (palettes) {
if (palettes.uid) {
sopInstance.paletteColorLookupTableUID = palettes.uid;
}
sopInstance.redPaletteColorLookupTableData = palettes.red;
sopInstance.greenPaletteColorLookupTableData = palettes.green;
sopInstance.bluePaletteColorLookupTableData = palettes.blue;
sopInstance.redPaletteColorLookupTableDescriptor = redPaletteColorLookupTableDescriptor;
sopInstance.greenPaletteColorLookupTableDescriptor = greenPaletteColorLookupTableDescriptor;
sopInstance.bluePaletteColorLookupTableDescriptor = bluePaletteColorLookupTableDescriptor;
}
}
series.instances.push(sopInstance);
return sopInstance;
}
/**
* Create a plain JS object that describes a study (a study descriptor object)
* @param {Object} server Object with server configuration paramenters
* @param {Object} aSopInstance a SOP Instance from which study information will be added
*/
function createStudy(server, aSopInstance) {
// TODO: Pass a reference ID to the server instead of including the URLs here
return {
seriesList: [],
seriesMap: Object.create(null),
seriesLoader: null,
wadoUriRoot: server.wadoUriRoot,
wadoRoot: server.wadoRoot,
qidoRoot: server.qidoRoot,
patientName: DICOMWeb.getName(aSopInstance['00100010']),
patientId: DICOMWeb.getString(aSopInstance['00100020']),
patientAge: DICOMWeb.getNumber(aSopInstance['00101010']),
patientSize: DICOMWeb.getNumber(aSopInstance['00101020']),
patientWeight: DICOMWeb.getNumber(aSopInstance['00101030']),
accessionNumber: DICOMWeb.getString(aSopInstance['00080050']),
studyDate: DICOMWeb.getString(aSopInstance['00080020']),
modalities: DICOMWeb.getString(aSopInstance['00080061']),
studyDescription: DICOMWeb.getString(aSopInstance['00081030']),
imageCount: DICOMWeb.getString(aSopInstance['00201208']),
studyInstanceUid: DICOMWeb.getString(aSopInstance['0020000D']),
institutionName: DICOMWeb.getString(aSopInstance['00080080']),
};
}
/**
* Add a list of SOP Instances to a given study object descriptor
* @param {Object} server Object with server configuration paramenters
* @param {Object} study The study descriptor to which the given SOP instances will be added
* @param {Array} sopInstanceList A list of SOP instance objects
*/
async function addInstancesToStudy(server, study, sopInstanceList) {
return Promise.all(
sopInstanceList.map(function(sopInstance) {
return makeSOPInstance(server, study, sopInstance);
})
);
}
/**
* Parses result data from a WADO search into Study MetaData
* Returns an object populated with study metadata, including the
* series list.
*
* @param server
* @param studyInstanceUid
* @param resultData
* @returns {{seriesList: Array, patientName: *, patientId: *, accessionNumber: *, studyDate: *, modalities: *, studyDescription: *, imageCount: *, studyInstanceUid: *}}
* @param {Object} server Object with server configuration paramenters
* @param {Array} sopInstanceList List of SOP Instances that build up to the study
* @resolves {{seriesList: Array, patientName: *, patientId: *, accessionNumber: *, studyDate: *, modalities: *, studyDescription: *, imageCount: *, studyInstanceUid: *}}
*/
async function resultDataToStudyMetadata(server, studyInstanceUid, resultData) {
if (!resultData.length) {
return;
async function createStudyFromSOPInstanceList(server, sopInstanceList) {
if (Array.isArray(sopInstanceList) && sopInstanceList.length > 0) {
const firstSopInstance = sopInstanceList[0];
const study = createStudy(server, firstSopInstance);
await addInstancesToStudy(server, study, sopInstanceList);
return study;
}
const anInstance = resultData[0];
if (!anInstance) {
return;
}
// TODO: Pass a reference ID to the server instead of including the URLs here
const studyData = {
seriesList: [],
wadoUriRoot: server.wadoUriRoot,
wadoRoot: server.wadoRoot,
qidoRoot: server.qidoRoot,
patientName: DICOMWeb.getName(anInstance['00100010']),
patientId: DICOMWeb.getString(anInstance['00100020']),
patientAge: DICOMWeb.getNumber(anInstance['00101010']),
patientSize: DICOMWeb.getNumber(anInstance['00101020']),
patientWeight: DICOMWeb.getNumber(anInstance['00101030']),
accessionNumber: DICOMWeb.getString(anInstance['00080050']),
studyDate: DICOMWeb.getString(anInstance['00080020']),
modalities: DICOMWeb.getString(anInstance['00080061']),
studyDescription: DICOMWeb.getString(anInstance['00081030']),
imageCount: DICOMWeb.getString(anInstance['00201208']),
studyInstanceUid: DICOMWeb.getString(anInstance['0020000D']),
institutionName: DICOMWeb.getString(anInstance['00080080']),
};
const seriesMap = {};
await Promise.all(
resultData.map(async function(instance) {
const seriesInstanceUid = DICOMWeb.getString(instance['0020000E']);
let series = seriesMap[seriesInstanceUid];
if (!series) {
series = {
seriesDescription: DICOMWeb.getString(instance['0008103E']),
modality: DICOMWeb.getString(instance['00080060']),
seriesInstanceUid: seriesInstanceUid,
seriesNumber: DICOMWeb.getNumber(instance['00200011']),
seriesDate: DICOMWeb.getString(instance['00080021']),
seriesTime: DICOMWeb.getString(instance['00080031']),
instances: [],
};
seriesMap[seriesInstanceUid] = series;
studyData.seriesList.push(series);
}
const sopInstanceUid = DICOMWeb.getString(instance['00080018']);
const wadouri = buildInstanceWadoUrl(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const baseWadoRsUri = buildInstanceWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const wadorsuri = buildInstanceFrameWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const instanceSummary = {
imageType: DICOMWeb.getString(instance['00080008']),
sopClassUid: DICOMWeb.getString(instance['00080016']),
modality: DICOMWeb.getString(instance['00080060']),
sopInstanceUid,
instanceNumber: DICOMWeb.getNumber(instance['00200013']),
imagePositionPatient: DICOMWeb.getString(instance['00200032']),
imageOrientationPatient: DICOMWeb.getString(instance['00200037']),
frameOfReferenceUID: DICOMWeb.getString(instance['00200052']),
sliceLocation: DICOMWeb.getNumber(instance['00201041']),
samplesPerPixel: DICOMWeb.getNumber(instance['00280002']),
photometricInterpretation: DICOMWeb.getString(instance['00280004']),
planarConfiguration: DICOMWeb.getNumber(instance['00280006']),
rows: DICOMWeb.getNumber(instance['00280010']),
columns: DICOMWeb.getNumber(instance['00280011']),
pixelSpacing: DICOMWeb.getString(instance['00280030']),
pixelAspectRatio: DICOMWeb.getString(instance['00280034']),
bitsAllocated: DICOMWeb.getNumber(instance['00280100']),
bitsStored: DICOMWeb.getNumber(instance['00280101']),
highBit: DICOMWeb.getNumber(instance['00280102']),
pixelRepresentation: DICOMWeb.getNumber(instance['00280103']),
smallestPixelValue: DICOMWeb.getNumber(instance['00280106']),
largestPixelValue: DICOMWeb.getNumber(instance['00280107']),
windowCenter: DICOMWeb.getString(instance['00281050']),
windowWidth: DICOMWeb.getString(instance['00281051']),
rescaleIntercept: DICOMWeb.getNumber(instance['00281052']),
rescaleSlope: DICOMWeb.getNumber(instance['00281053']),
rescaleType: DICOMWeb.getNumber(instance['00281054']),
sourceImageInstanceUid: getSourceImageInstanceUid(instance),
laterality: DICOMWeb.getString(instance['00200062']),
viewPosition: DICOMWeb.getString(instance['00185101']),
acquisitionDateTime: DICOMWeb.getString(instance['0008002A']),
numberOfFrames: DICOMWeb.getNumber(instance['00280008']),
frameIncrementPointer: getFrameIncrementPointer(instance['00280009']),
frameTime: DICOMWeb.getNumber(instance['00181063']),
frameTimeVector: parseFloatArray(
DICOMWeb.getString(instance['00181065'])
),
sliceThickness: DICOMWeb.getNumber(instance['00180050']),
spacingBetweenSlices: DICOMWeb.getString(instance['00180088']),
lossyImageCompression: DICOMWeb.getString(instance['00282110']),
derivationDescription: DICOMWeb.getString(instance['00282111']),
lossyImageCompressionRatio: DICOMWeb.getString(instance['00282112']),
lossyImageCompressionMethod: DICOMWeb.getString(instance['00282114']),
echoNumber: DICOMWeb.getString(instance['00180086']),
contrastBolusAgent: DICOMWeb.getString(instance['00180010']),
radiopharmaceuticalInfo: getRadiopharmaceuticalInfo(instance),
baseWadoRsUri: baseWadoRsUri,
wadouri: WADOProxy.convertURL(wadouri, server),
wadorsuri: WADOProxy.convertURL(wadorsuri, server),
wadoRoot: server.wadoRoot,
imageRendering: server.imageRendering,
thumbnailRendering: server.thumbnailRendering,
};
// Get additional information if the instance uses "PALETTE COLOR" photometric interpretation
if (instanceSummary.photometricInterpretation === 'PALETTE COLOR') {
const redPaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281101'])
);
const greenPaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281102'])
);
const bluePaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281103'])
);
const palettes = await getPaletteColors(
server,
instance,
redPaletteColorLookupTableDescriptor
);
if (palettes) {
if (palettes.uid) {
instanceSummary.paletteColorLookupTableUID = palettes.uid;
}
instanceSummary.redPaletteColorLookupTableData = palettes.red;
instanceSummary.greenPaletteColorLookupTableData = palettes.green;
instanceSummary.bluePaletteColorLookupTableData = palettes.blue;
instanceSummary.redPaletteColorLookupTableDescriptor = redPaletteColorLookupTableDescriptor;
instanceSummary.greenPaletteColorLookupTableDescriptor = greenPaletteColorLookupTableDescriptor;
instanceSummary.bluePaletteColorLookupTableDescriptor = bluePaletteColorLookupTableDescriptor;
}
}
series.instances.push(instanceSummary);
})
);
return studyData;
throw new Error('Failed to create study out of provided SOP instance list');
}
/**
* Retrieve Study MetaData from a DICOM server using a WADO call
*
* @param server
* @param studyInstanceUid
* @returns {Promise}
* Retrieve Study metadata from a DICOM server. If the server is configured to use lazy load, only the first series
* will be loaded and the property "studyLoader" will be set to let consumer load remaining series as needed
* @param {Object} server Object with server configuration paramenters
* @param {string} studyInstanceUid The Study Instance UID of the study which needs to be loaded
* @returns {Object} A study descriptor object
*/
async function RetrieveMetadata(server, studyInstanceUid) {
const config = {
return (server.enableStudyLazyLoad
? lazyLoadStudyMetadata
: loadStudyMetadata)(server, studyInstanceUid);
}
/**
*
* @param {*} server
* @param {*} studyInstanceUID
*/
async function loadStudyMetadata(server, studyInstanceUID) {
const dicomWeb = new api.DICOMwebClient({
url: server.wadoRoot,
headers: DICOMWeb.getAuthorizationHeader(server),
};
const dicomWeb = new api.DICOMwebClient(config);
const options = {
studyInstanceUID: studyInstanceUid,
};
});
return dicomWeb
.retrieveStudyMetadata({ studyInstanceUID })
.then(result => createStudyFromSOPInstanceList(server, result));
}
return dicomWeb.retrieveStudyMetadata(options).then(result => {
return resultDataToStudyMetadata(server, studyInstanceUid, result);
async function lazyLoadStudyMetadata(server, studyInstanceUid) {
const seriesInstanceUids = await searchStudySeries(server, studyInstanceUid);
const dicomWeb = new api.DICOMwebClient({
url: server.wadoRoot,
headers: DICOMWeb.getAuthorizationHeader(server),
});
const seriesLoader = makeSeriesLoader(
dicomWeb,
studyInstanceUid,
seriesInstanceUids
);
const firstSeries = await seriesLoader.next();
const study = await createStudyFromSOPInstanceList(
server,
firstSeries.sopInstances
);
if (seriesLoader.hasNext()) {
attachSeriesLoader(server, study, seriesLoader);
}
return study;
}
function attachSeriesLoader(server, study, seriesLoader) {
study.seriesLoader = Object.freeze({
hasNext() {
return seriesLoader.hasNext();
},
async next() {
const series = await seriesLoader.next();
await addInstancesToStudy(server, study, series.sopInstances);
return study.seriesMap[series.seriesInstanceUID];
},
});
}
/**
* Creates an immutable series loader object which loads each series sequentially using the iterator interface
* @param {DICOMWebClient} dicomWebClient The DICOMWebClient instance to be used for series load
* @param {string} studyInstanceUID The Study Instance UID from which series will be loaded
* @param {Array} seriesInstanceUIDList A list of Series Instance UIDs
* @returns {Object} Returns an object which supports loading of instances from each of given Series Instance UID
*/
function makeSeriesLoader(
dicomWebClient,
studyInstanceUID,
seriesInstanceUIDList
) {
return Object.freeze({
hasNext() {
return seriesInstanceUIDList.length > 0;
},
async next() {
const seriesInstanceUID = seriesInstanceUIDList.shift();
const sopInstances = await dicomWebClient.retrieveSeriesMetadata({
studyInstanceUID,
seriesInstanceUID,
});
return { studyInstanceUID, seriesInstanceUID, sopInstances };
},
});
}
/**
* Search series of a given study
* @param {Object} server Object with server configuration paramenters
* @param {string} studyInstanceUID The Study Instance UID to search series from;
* @returns {Arrays} A list of Series Instance UIDs
*/
async function searchStudySeries(server, studyInstanceUID) {
const dicomWeb = new api.DICOMwebClient({
url: server.qidoRoot,
headers: DICOMWeb.getAuthorizationHeader(server),
});
const seriesList = await dicomWeb.searchForSeries({ studyInstanceUID });
return seriesList
.sort(seriesSortingCriteria)
.map(series => getSeriesInfo(series).seriesInstanceUid);
}
/**
* Series sorting criteria: series considered low priority are moved to the end
* of the list and series number is used to break ties
* @param {Object} firstSeries
* @param {Object} secondSeries
*/
function seriesSortingCriteria(firstSeries, secondSeries) {
const a = getSeriesInfo(firstSeries);
const b = getSeriesInfo(secondSeries);
if (!a.isLowPriority && b.isLowPriority) {
return -1;
}
if (a.isLowPriority && !b.isLowPriority) {
return 1;
}
return a.seriesNumber - b.seriesNumber;
}
/**
* Creates an object with processed series information and saves its reference
* inside the series object itself to simplify sorting
* @param {Object} series The raw series object
*/
function getSeriesInfo(series) {
let info = series[INFO];
if (!info) {
const modality = DICOMWeb.getString(series['00080060'], '').toUpperCase();
info = Object.freeze({
modality,
isLowPriority: isLowPriorityModality(modality),
seriesInstanceUid: DICOMWeb.getString(series['0020000E']),
seriesNumber: DICOMWeb.getNumber(series['00200011'], 0) || 0,
});
series[INFO] = info;
}
return info;
}
export default RetrieveMetadata;
@@ -0,0 +1,5 @@
const LOW_PRIORITY_MODALITIES = Object.freeze(['SEG', 'KO', 'PR']);
export default function isLowPriorityModality(modality) {
return LOW_PRIORITY_MODALITIES.includes(modality);
}
@@ -70,32 +70,48 @@ const getWadoRsInstanceMetaData = (study, series, instance) => {
.toJSON();
};
export default function updateMetaDataManager(study) {
study.seriesList.forEach(series => {
series.instances.forEach(instance => {
// Cache just images that are going to be loaded via WADO-RS
if (
instance.imageRendering !== 'wadors' &&
instance.thumbnailRendering !== 'wadors'
) {
return;
}
/**
* Update metadata manager with instances of a specifc series
* @param {Object} study A plain study descriptor object
* @param {Object} series A Series descriptor object contaning the instances to be added to the manager
*/
function updateMetaDataManagerForSeries(study, series) {
series.instances.forEach(instance => {
// Cache just images that are going to be loaded via WADO-RS
if (
instance.imageRendering !== 'wadors' &&
instance.thumbnailRendering !== 'wadors'
) {
return;
}
const metaData = getWadoRsInstanceMetaData(study, series, instance);
const numberOfFrames = instance.numberOfFrames || 1;
const metaData = getWadoRsInstanceMetaData(study, series, instance);
const numberOfFrames = instance.numberOfFrames || 1;
// We can share the same metaData with all frames because it doesn't have
// any frame specific data, such as frameNumber, pixelData, offset, etc.
// WADO-RS frame number is 1-based
for (let frameNumber = 0; frameNumber < numberOfFrames; frameNumber++) {
const imageId = getWADORSImageId(instance, frameNumber);
// We can share the same metaData with all frames because it doesn't have
// any frame specific data, such as frameNumber, pixelData, offset, etc.
// WADO-RS frame number is 1-based
for (let frameNumber = 0; frameNumber < numberOfFrames; frameNumber++) {
const imageId = getWADORSImageId(instance, frameNumber);
// TODO Drop dependency on this
cornerstoneWADOImageLoader.wadors.metaDataManager.add(
imageId,
metaData
);
}
});
// TODO Drop dependency on this
cornerstoneWADOImageLoader.wadors.metaDataManager.add(imageId, metaData);
}
});
}
/**
* Update metadata manager
* @param {Object} study A plain study descriptor object
* @param {string} [seriesInstanceUid] The Series Instance UID of the series to be added (Optional)
*/
export default function updateMetaDataManager(study, seriesInstanceUid) {
if (seriesInstanceUid) {
const series = study.seriesMap[seriesInstanceUid];
updateMetaDataManagerForSeries(study, series);
} else {
study.seriesList.forEach(series => {
updateMetaDataManagerForSeries(study, series);
});
}
}
+11
View File
@@ -3,6 +3,17 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [0.53.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.52.0...@ohif/ui@0.53.0) (2019-10-03)
### Features
* Use QIDO + WADO to load series metadata individually rather than the entire study metadata at once ([#953](https://github.com/OHIF/Viewers/issues/953)) ([9e10c2b](https://github.com/OHIF/Viewers/commit/9e10c2b))
# [0.52.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.51.3...@ohif/ui@0.52.0) (2019-10-01)
+1 -1
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/ui",
"version": "0.52.0",
"version": "0.53.0",
"description": "A set of React components for Medical Imaging Viewers",
"author": "OHIF Contributors",
"license": "MIT",
@@ -1,3 +1,4 @@
/* global cornerstone */
import './ImageThumbnail.styl';
import React, { PureComponent } from 'react';
@@ -12,25 +13,6 @@ import ViewportLoadingIndicator from '../../viewer/ViewportLoadingIndicator';
// - Pass in the entire load and render function as a prop?
//import cornerstone from 'cornerstone-core';
/**
* Asynchronous wrapper around Cornerstone's renderToCanvas method.
*
* @param {HTMLElement} canvasElement An HTML <canvas> element
* @param {Image} image A Cornerstone Image
*
* @return {Promise} A promise tracking the progress of the rendering. Resolves empty.
*/
function renderAsync(canvasElement, image) {
return new Promise((resolve, reject) => {
try {
cornerstone.renderToCanvas(canvasElement, image);
resolve();
} catch (error) {
reject(error);
}
});
}
export default class ImageThumbnail extends PureComponent {
static propTypes = {
imageSrc: PropTypes.string,
@@ -52,40 +34,32 @@ export default class ImageThumbnail extends PureComponent {
super(props);
this.canvas = React.createRef();
const renderIntoCanvas = this.props.imageId && !this.props.imageSrc;
this.state = {
loading: renderIntoCanvas,
loading: this.shouldRenderToCanvas(),
};
}
shouldRenderToCanvas() {
return this.props.imageId && !this.props.imageSrc;
}
componentDidMount() {
const renderIntoCanvas = this.props.imageId && !this.props.imageSrc;
if (renderIntoCanvas) {
const { imageId } = this.props;
const canvas = this.canvas.current;
cornerstone.loadAndCacheImage(imageId).then(
image => {
renderAsync(canvas, image).then(
() => {
this.setState({
loading: false,
});
},
error => {
// TODO: Set state?
throw new Error(error);
}
);
},
error => {
// TODO: Set state?
if (this.shouldRenderToCanvas()) {
cornerstone
.loadAndCacheImage(this.props.imageId)
.then(image => {
cornerstone.renderToCanvas(this.canvas.current, image);
this.setState({
loading: false,
});
})
.catch(error => {
this.setState({
loading: false,
error: true,
});
throw new Error(error);
}
);
});
}
}
@@ -100,12 +74,10 @@ export default class ImageThumbnail extends PureComponent {
const showStackLoadingProgressBar =
this.props.stackPercentComplete !== undefined;
const renderIntoCanvas = this.props.imageId && !this.props.imageSrc;
return (
<div className="ImageThumbnail">
<div className="image-thumbnail-canvas">
{renderIntoCanvas ? (
{this.shouldRenderToCanvas() ? (
<canvas
ref={this.canvas}
width={this.props.width}
@@ -130,6 +102,9 @@ export default class ImageThumbnail extends PureComponent {
/>
</div>
)}
{this.state.loading && (
<div className="image-thumbnail-loading-indicator"></div>
)}
</div>
);
}
@@ -26,6 +26,36 @@
-webkit-background-clip: padding
background-clip: padding-box
// Thumbnail Loading Indicator
.image-thumbnail-loading-indicator
position: absolute
left: 50%
top: 50%
margin: -22px 0 0 -22px
display: block
width: 44px
height: 44px
&:after
content: " "
display: block
width: 32px
height: 32px
margin: 1px
border-radius: 50%
border: 5px solid var(--ui-border-color-dark)
border-color: var(--ui-border-color-dark) transparent var(--ui-border-color-dark) transparent
animation: image-thumbnail-loading-indicator 1.2s linear infinite
@keyframes image-thumbnail-loading-indicator
0%
transform: rotate(0deg)
100%
transform: rotate(360deg)
// The End...
.image-thumbnail-canvas
height: 100%
overflow: hidden
@@ -36,7 +66,6 @@
-webkit-user-drag: none
pointer-events: none
.thumbnailLoadingIndicator
display: none
pointer-events: none
@@ -25,7 +25,7 @@ class StudyBrowser extends Component {
if (this.props.supportsDragAndDrop) {
return (
<ThumbnailEntryDragSource
key={`${studyIndex}_${thumbIndex}`}
key={thumb.displaySetInstanceUid}
{...study}
{...thumb}
id={`${studyIndex}_${thumbIndex}`}
@@ -37,7 +37,7 @@ class StudyBrowser extends Component {
return (
<div className="ThumbnailEntryContainer">
<ThumbnailEntry
key={`${studyIndex}_${thumbIndex}`}
key={thumb.displaySetInstanceUid}
{...study}
{...thumb}
id={`${studyIndex}_${thumbIndex}`}
+27
View File
@@ -3,6 +3,33 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [1.4.1](https://github.com/OHIF/Viewers/compare/@ohif/viewer@1.4.0...@ohif/viewer@1.4.1) (2019-10-03)
**Note:** Version bump only for package @ohif/viewer
# [1.4.0](https://github.com/OHIF/Viewers/compare/@ohif/viewer@1.3.3...@ohif/viewer@1.4.0) (2019-10-03)
### Features
* Use QIDO + WADO to load series metadata individually rather than the entire study metadata at once ([#953](https://github.com/OHIF/Viewers/issues/953)) ([9e10c2b](https://github.com/OHIF/Viewers/commit/9e10c2b))
## [1.3.3](https://github.com/OHIF/Viewers/compare/@ohif/viewer@1.3.2...@ohif/viewer@1.3.3) (2019-10-02)
**Note:** Version bump only for package @ohif/viewer
## [1.3.2](https://github.com/OHIF/Viewers/compare/@ohif/viewer@1.3.1...@ohif/viewer@1.3.2) (2019-10-01)
**Note:** Version bump only for package @ohif/viewer
+4 -4
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/viewer",
"version": "1.3.2",
"version": "1.4.1",
"description": "OHIF Viewer",
"author": "OHIF Contributors",
"license": "MIT",
@@ -46,14 +46,14 @@
},
"dependencies": {
"@babel/runtime": "^7.5.5",
"@ohif/core": "^1.0.1",
"@ohif/core": "^1.1.0",
"@ohif/extension-cornerstone": "^2.0.0",
"@ohif/extension-dicom-html": "^1.0.0",
"@ohif/extension-dicom-microscopy": "^0.50.6",
"@ohif/extension-dicom-pdf": "^1.0.0",
"@ohif/extension-vtk": "^0.51.1",
"@ohif/extension-vtk": "^0.52.0",
"@ohif/i18n": "^0.50.4",
"@ohif/ui": "^0.52.0",
"@ohif/ui": "^0.53.0",
"@tanem/react-nprogress": "^1.1.25",
"classnames": "^2.2.6",
"core-js": "^3.2.1",
+1
View File
@@ -13,6 +13,7 @@ window.config = {
qidoSupportsIncludeField: true,
imageRendering: 'wadors',
thumbnailRendering: 'wadors',
enableStudyLazyLoad: true,
},
],
},
+1
View File
@@ -12,6 +12,7 @@ window.config = {
qidoSupportsIncludeField: true,
imageRendering: 'wadors',
thumbnailRendering: 'wadors',
enableStudyLazyLoad: true,
},
],
},
+1
View File
@@ -11,6 +11,7 @@ window.config = {
qidoSupportsIncludeField: true,
imageRendering: 'wadors',
thumbnailRendering: 'wadors',
enableStudyLazyLoad: true,
},
],
},
@@ -1,11 +1,11 @@
import React, { Component } from "react";
import { metadata, studies, utils } from "@ohif/core";
import React, { Component } from 'react';
import { metadata, studies, utils, log } from '@ohif/core';
import ConnectedViewer from "./ConnectedViewer.js";
import PropTypes from "prop-types";
import { extensionManager } from "./../App.js";
import ConnectedViewer from './ConnectedViewer.js';
import PropTypes from 'prop-types';
import { extensionManager } from './../App.js';
const { OHIFStudyMetadata } = metadata;
const { OHIFStudyMetadata, OHIFSeriesMetadata } = metadata;
const { retrieveStudiesMetadata } = studies;
const { studyMetadataManager, updateMetaDataManager } = utils;
@@ -13,65 +13,97 @@ class ViewerRetrieveStudyData extends Component {
static propTypes = {
studyInstanceUids: PropTypes.array.isRequired,
seriesInstanceUids: PropTypes.array,
server: PropTypes.object
server: PropTypes.object,
};
state = {
studies: null,
error: null
};
async componentDidMount() {
// TODO: Avoid using timepoints here
//const params = { studyInstanceUids, seriesInstanceUids, timepointId, timepointsFilter={} };
const { studyInstanceUids, seriesInstanceUids, server } = this.props;
constructor(props) {
super(props);
this.state = {
studies: null,
error: null,
};
}
async loadStudies() {
try {
const { server, studyInstanceUids, seriesInstanceUids } = this.props;
const studies = await retrieveStudiesMetadata(
server,
studyInstanceUids,
seriesInstanceUids
);
this.setStudies(studies);
} catch (e) {
this.setState({ error: true });
log.error(e);
}
}
// Render the viewer when the data is ready
// TODO: CLEAR THIS SOMEWHERE ELSE
studyMetadataManager.purge();
setStudies(givenStudies) {
if (Array.isArray(givenStudies) && givenStudies.length > 0) {
const sopClassHandlerModules =
extensionManager.modules['sopClassHandlerModule'];
// Map studies to new format, update metadata manager?
const updatedStudies = studies.map(study => {
const studies = givenStudies.map(study => {
const studyMetadata = new OHIFStudyMetadata(
study,
study.studyInstanceUid
);
const sopClassHandlerModules =
extensionManager.modules["sopClassHandlerModule"];
study.displaySets =
study.displaySets ||
studyMetadata.createDisplaySets(sopClassHandlerModules);
if (!study.displaySets) {
study.displaySets = studyMetadata.createDisplaySets(
sopClassHandlerModules
);
}
studyMetadata.setDisplaySets(study.displaySets);
// Updates WADO-RS metaDataManager
updateMetaDataManager(study);
studyMetadataManager.add(studyMetadata);
// Attempt to load remaning series if any
this._attemptToLoadRemainingSeries(studyMetadata);
return study;
});
this.setState({
studies: updatedStudies
});
} catch (err) {
this.setState({
error: true
});
// TODO: Handle gracefully instead of throwing?
throw new Error(err);
this.setState({ studies });
}
}
_addSeriesToStudy(studyMetadata, series) {
const sopClassHandlerModules =
extensionManager.modules['sopClassHandlerModule'];
const study = studyMetadata.getData();
const seriesMetadata = new OHIFSeriesMetadata(series, study);
studyMetadata.addSeries(seriesMetadata);
studyMetadata.createAndAddDisplaySetsForSeries(
sopClassHandlerModules,
seriesMetadata
);
study.displaySets = studyMetadata.getDisplaySets();
updateMetaDataManager(study, series.seriesInstanceUid);
this.setState(function(state) {
return { studies: state.studies.slice() };
});
}
_attemptToLoadRemainingSeries(studyMetadata) {
const { seriesLoader } = studyMetadata.getData();
if (!seriesLoader) {
return;
}
while (seriesLoader.hasNext()) {
seriesLoader
.next()
.then(
series => void this._addSeriesToStudy(studyMetadata, series),
error => void log.error(error)
);
}
}
componentDidMount() {
// TODO: CLEAR THIS SOMEWHERE ELSE
studyMetadataManager.purge();
this.loadStudies();
}
render() {
if (this.state.error) {
return <div>Error: {JSON.stringify(this.state.error)}</div>;
+10
View File
@@ -2272,6 +2272,16 @@
once "^1.4.0"
universal-user-agent "^4.0.0"
"@ohif/extension-cornerstone@^2.0.0":
version "2.0.0"
resolved "https://registry.yarnpkg.com/@ohif/extension-cornerstone/-/extension-cornerstone-2.0.0.tgz#b4ee3b594212502192cdd311a100354857280548"
integrity sha512-hvJ3t2GRcu906NiYpUWaJIB9ja/M/MKEYLy19t4XBFpqf4VqoezR2KJpZelmZjQscXGaDQeZgvr3DJO5Nva8Uw==
dependencies:
"@babel/runtime" "^7.5.5"
classnames "^2.2.6"
lodash.throttle "^4.1.1"
react-cornerstone-viewport "0.1.30"
"@ohif/i18n@^0.2.3":
version "0.2.5"
resolved "https://registry.yarnpkg.com/@ohif/i18n/-/i18n-0.2.5.tgz#2b92a78109823ce0f50dd590201d980a5fd64974"