chore(release): publish [skip ci]

- @ohif/extension-vtk@0.52.16
 - @ohif/viewer@1.11.3

.circleci/config.yml

@@ -13,7 +13,7 @@ version: 2.1
 ##
 orbs:
   codecov: codecov/codecov@1.0.5
-  cypress: cypress-io/cypress@1.10.0
+  cypress: cypress-io/cypress@1.11.0
 
 defaults: &defaults
   docker:
@@ -198,7 +198,7 @@ jobs:
       - run: chmod +x ~/repo/.circleci/build-and-publish-docs.sh
       - run: ~/repo/.circleci/build-and-publish-docs.sh
 
-  DOCKER_PUBLISH:
+  DOCKER_MASTER_PUBLISH:
     <<: *defaults
     steps:
       - attach_workspace:
@@ -227,6 +227,43 @@ jobs:
               docker push ohif/$IMAGE_NAME:latest
             fi
 
+  DOCKER_PR_PUBLISH:
+    <<: *defaults
+    steps:
+      # Enable yarn workspaces
+      - run: yarn config set workspaces-experimental true
+
+      # Checkout code and ALL Git Tags
+      - checkout:
+          post:
+            - git fetch --all
+
+      - restore_cache:
+          name: Restore Yarn and Cypress Package Cache
+          keys:
+            # when lock file changes, use increasingly general patterns to restore cache
+            - yarn-packages-{{ checksum "yarn.lock" }}
+            - yarn-packages-
+
+      - run:
+          name: Install Dependencies
+          command: yarn install --frozen-lockfile
+
+      - setup_remote_docker:
+          docker_layer_caching: false
+
+      - run:
+          name: Build and push Docker image
+          command: |
+            # Remove npm config
+            rm -f ./.npmrc
+            # Set our version number using vars
+            echo $CIRCLE_BUILD_NUM
+            # Build our image, auth, and push
+            docker build --tag ohif/viewer:PR_BUILD-$CIRCLE_BUILD_NUM .
+            echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
+            docker push ohif/viewer:PR_BUILD-$CIRCLE_BUILD_NUM
+
   VIEWER_DEMO_BUILD:
     <<: *defaults
     steps:
@@ -288,10 +325,13 @@ workflows:
       # E2E: PWA
       - cypress/run:
           name: 'E2E: PWA'
+          executor: cypress/browsers-chrome76
+          browser: chrome
           pre-steps:
             - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
                 add wait-on' # Use yarn latest
           yarn: true
+          record: false
           store_artifacts: false
           working_directory: platform/viewer
           build: npx cross-env QUICK_BUILD=true yarn run build
@@ -307,10 +347,13 @@ workflows:
       # E2E: script-tag
       - cypress/run:
           name: 'E2E: Script Tag'
+          executor: cypress/browsers-chrome76
+          browser: chrome
           pre-steps:
             - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
                 add wait-on' # Use yarn latest
           yarn: true
+          record: false
           store_artifacts: false
           working_directory: platform/viewer
           build: npx cross-env QUICK_BUILD=true yarn run build:package
@@ -325,6 +368,17 @@ workflows:
           requires:
             - UNIT_TESTS
 
+  PR_OPTIONAL_DOCKER_PUBLISH:
+    jobs:
+      # https://circleci.com/docs/2.0/workflows/#holding-a-workflow-for-a-manual-approval
+      - AWAIT_APPROVAL:
+          type: approval
+      # Update hub.docker.org
+      - DOCKER_PR_PUBLISH:
+          context: Docker Hub
+          requires:
+            - AWAIT_APPROVAL
+
   # MERGE TO MASTER
   RELEASE:
     jobs:
@@ -335,11 +389,13 @@ workflows:
       # E2E: PWA + Persist
       - cypress/run:
           name: 'E2E: PWA'
+          executor: cypress/browsers-chrome76
+          browser: chrome
           pre-steps:
             - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
                 add wait-on' # Use yarn latest
           yarn: true
-          record: true
+          record: false
           store_artifacts: true
           working_directory: platform/viewer
           build: npx cross-env QUICK_BUILD=true yarn run build
@@ -358,10 +414,13 @@ workflows:
       # E2E: script-tag
       - cypress/run:
           name: 'E2E: Script Tag'
+          executor: cypress/browsers-chrome76
+          browser: chrome
           pre-steps:
             - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
                 add wait-on' # Use yarn latest
           yarn: true
+          record: false
           store_artifacts: false
           working_directory: platform/viewer
           build: npx cross-env QUICK_BUILD=true yarn run build:package
@@ -396,6 +455,6 @@ workflows:
           requires:
             - VIEWER_DEMO_BUILD
       # Update hub.docker.org
-      - DOCKER_PUBLISH:
+      - DOCKER_MASTER_PUBLISH:
           requires:
             - NPM_PUBLISH

.github/PULL_REQUEST_TEMPLATE/pull_request_template.md

@@ -0,0 +1,29 @@
+### Request Checklist
+
+- [] Brief description of changes
+- [] Links to any relevant issues
+- [] Required status checks are passing
+- [] `@mention` a maintainer to request a review
+
+#### Special
+
+> If this PR is not on a branch for this repo, it is "untrusted" and does not
+> have access to env vars. Reviewers can kick off a trusted docker deploy by:
+>
+> 1. Verifying there are no malicious changes to CI build
+> 2. Using the [git-push-fork-to-upstream-branch][script] script
+> 3. Executing the manual approval step in the CI workflow
+
+- [] Request docker publish of PR
+
+_Want to improve this process? Consider PR'ing the ability for reviewers to add
+a label to trigger this process._
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[blog]: https://circleci.com/blog/triggering-trusted-ci-jobs-on-untrusted-forks/
+[script]: https://github.com/jklukas/git-push-fork-to-upstream-branch
+<!-- prettier-ignore-end -->

Dockerfile

@@ -44,6 +44,7 @@ RUN yarn config set workspaces-experimental true
 RUN yarn install
 
 ENV PATH /usr/src/app/node_modules/.bin:$PATH
+ENV QUICK_BUILD true
 # ENV GENERATE_SOURCEMAP=false
 # ENV REACT_APP_CONFIG=config/default.js
 

extensions/vtk/CHANGELOG.md

@@ -3,6 +3,44 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.52.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.15...@ohif/extension-vtk@0.52.16) (2019-10-23)
+
+
+### Bug Fixes
+
+* 🐛 Switch to orhtographic view for 2D MPR ([#1074](https://github.com/OHIF/Viewers/issues/1074)) ([13d337a](https://github.com/OHIF/Viewers/commit/13d337aaabb8dadf6366c6262c5e47e7781edd08))
+
+
+
+
+
+## [0.52.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.14...@ohif/extension-vtk@0.52.15) (2019-10-23)
+
+
+### Performance Improvements
+
+* ⚡️ Throttle UI refresh of synced WL value in vtk port ([#1070](https://github.com/OHIF/Viewers/issues/1070)) ([9d08e81](https://github.com/OHIF/Viewers/commit/9d08e81aa5def63a5e34f464aae099f7c29f0ac5))
+
+
+
+
+
+## [0.52.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.13...@ohif/extension-vtk@0.52.14) (2019-10-22)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.12...@ohif/extension-vtk@0.52.13) (2019-10-18)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
 ## [0.52.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.11...@ohif/extension-vtk@0.52.12) (2019-10-18)
 
 **Note:** Version bump only for package @ohif/extension-vtk

extensions/vtk/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-vtk",
-  "version": "0.52.12",
+  "version": "0.52.16",
   "description": "OHIF extension for VTK.js",
   "author": "OHIF",
   "license": "MIT",
@@ -48,11 +48,12 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",
-    "react-vtkjs-viewport": "^0.3.0"
+    "lodash.throttle": "^4.1.1",
+    "react-vtkjs-viewport": "^0.3.5"
   },
   "devDependencies": {
     "@ohif/core": "^1.4.0",
-    "@ohif/ui": "^0.55.0",
+    "@ohif/ui": "^0.56.0",
     "cornerstone-tools": "^4.0.9",
     "cornerstone-wado-image-loader": "^3.0.0",
     "dcmjs": "^0.6.1",

extensions/vtk/src/OHIFVTKViewport.js

@@ -11,7 +11,6 @@ import vtkDataArray from 'vtk.js/Sources/Common/Core/DataArray';
 import vtkImageData from 'vtk.js/Sources/Common/DataModel/ImageData';
 import vtkVolume from 'vtk.js/Sources/Rendering/Core/Volume';
 import vtkVolumeMapper from 'vtk.js/Sources/Rendering/Core/VolumeMapper';
-import vtkViewportSubscriptionManager from './utils/vtkViewportSubscriptionManager.js';
 
 const { StackManager } = OHIF.utils;
 
@@ -182,7 +181,6 @@ class OHIFVTKViewport extends Component {
     }
 
     const { vtkImageData, imageMetaData0 } = imageDataObject;
-
     const { windowWidth, windowCenter, modality } = imageMetaData0;
 
     let lower;
@@ -208,18 +206,17 @@ class OHIFVTKViewport extends Component {
       .getRGBTransferFunction(0)
       .setRange(lower, upper);
 
-    // TODO: Should look into implementing autoAdjustSampleDistance in vtk
-    // Manually changing the sample distance here by a couple orders of
-    // Magnitude in either direction makes no difference.
-    // Also setting volumeMapper.setMaximumSamplesPerRay(10000)
-    // Prevents the warning of too many samples, but the resolution isn't improved.
-
     const spacing = vtkImageData.getSpacing();
+    // Set the sample distance to half the mean length of one side. This is where the divide by 6 comes from.
     // https://github.com/Kitware/VTK/blob/6b559c65bb90614fb02eb6d1b9e3f0fca3fe4b0b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.cxx#L344
-    const sampleDistance = (spacing[0] + spacing[1] + spacing[2]) / 6.0;
+    const sampleDistance = (spacing[0] + spacing[1] + spacing[2]) / 6;
 
     volumeMapper.setSampleDistance(sampleDistance);
 
+    // Be generous to surpress warnings, as the logging really hurts performance.
+    // TODO: maybe we should auto adjust samples to 1000.
+    volumeMapper.setMaximumSamplesPerRay(4000);
+
     volumeCache[displaySetInstanceUid] = volumeActor;
 
     return volumeActor;
@@ -251,6 +248,8 @@ class OHIFVTKViewport extends Component {
       frameIndex
     );
 
+    this.imageDataObject = imageDataObject;
+
     // TODO: Temporarily disabling this since it is not yet
     // being used and hurts performance significantly.
     /*if (!labelmap) {
@@ -294,10 +293,6 @@ class OHIFVTKViewport extends Component {
     this.setStateFromProps();
   }
 
-  componentWillUnmount() {
-    vtkViewportSubscriptionManager.unsubscribe(this.props.viewportIndex);
-  }
-
   componentDidUpdate(prevProps) {
     const { studies, displaySet } = this.props.viewportData;
     const prevDisplaySet = prevProps.viewportData.displaySet;

extensions/vtk/src/commandsModule.js

@@ -4,66 +4,17 @@ import {
   vtkInteractorStyleMPRSlice,
   vtkInteractorStyleMPRRotate,
   vtkSVGCrosshairsWidget,
-  vtkSVGWidgetManager,
 } from 'react-vtkjs-viewport';
 
 import setMPRLayout from './utils/setMPRLayout.js';
 import setViewportToVTK from './utils/setViewportToVTK.js';
-import vtkViewportSubscriptionManager from './utils/vtkViewportSubscriptionManager.js';
-import vtkCoordinate from 'vtk.js/Sources/Rendering/Core/Coordinate';
-import vtkMath from 'vtk.js/Sources/Common/Core/Math';
-import vtkMatrixBuilder from 'vtk.js/Sources/Common/Core/MatrixBuilder';
 import Constants from 'vtk.js/Sources/Rendering/Core/VolumeMapper/Constants.js';
+import throttle from 'lodash.throttle';
 
 const { BlendMode } = Constants;
 
 // TODO: Put this somewhere else
 let apis = {};
-let currentSlabThickness = 0.1;
-let defaultSlabThickness = 0.1;
-
-function getCrosshairCallbackForIndex(index) {
-  return ({ worldPos }) => {
-    // Set camera focal point to world coordinate for linked views
-    apis.forEach((api, viewportIndex) => {
-      if (viewportIndex !== index) {
-        // We are basically doing the same as getSlice but with the world coordinate
-        // that we want to jump to instead of the camera focal point.
-        // I would rather do the camera adjustment directly but I keep
-        // doing it wrong and so this is good enough for now.
-        const renderWindow = api.genericRenderWindow.getRenderWindow();
-
-        const istyle = renderWindow.getInteractor().getInteractorStyle();
-        const sliceNormal = istyle.getSliceNormal();
-        const transform = vtkMatrixBuilder
-          .buildFromDegree()
-          .identity()
-          .rotateFromDirections(sliceNormal, [1, 0, 0]);
-
-        const mutatedWorldPos = worldPos.slice();
-        transform.apply(mutatedWorldPos);
-        const slice = mutatedWorldPos[0];
-
-        istyle.setSlice(slice);
-
-        renderWindow.render();
-      }
-
-      const renderer = api.genericRenderWindow.getRenderer();
-      const wPos = vtkCoordinate.newInstance();
-      wPos.setCoordinateSystemToWorld();
-      wPos.setValue(worldPos);
-
-      const displayPosition = wPos.getComputedDisplayValue(renderer);
-      const { svgWidgetManager } = api;
-      api.svgWidgets.crosshairsWidget.setPoint(
-        displayPosition[0],
-        displayPosition[1]
-      );
-      svgWidgetManager.render();
-    });
-  };
-}
 
 async function _getActiveViewportVTKApi(viewports) {
   const {
@@ -105,8 +56,6 @@ async function _getActiveViewportVTKApi(viewports) {
 
 function _setView(api, sliceNormal, viewUp) {
   const renderWindow = api.genericRenderWindow.getRenderWindow();
-  const renderer = api.genericRenderWindow.getRenderer();
-  const camera = renderer.getActiveCamera();
   const istyle = renderWindow.getInteractor().getInteractorStyle();
   istyle.setSliceNormal(...sliceNormal);
   istyle.setViewUp(...viewUp);
@@ -114,41 +63,6 @@ function _setView(api, sliceNormal, viewUp) {
   renderWindow.render();
 }
 
-function switchMPRInteractors(api, istyle) {
-  const renderWindow = api.genericRenderWindow.getRenderWindow();
-  const currentIStyle = renderWindow.getInteractor().getInteractorStyle();
-
-  let currentViewport;
-  if (currentIStyle.getViewport && istyle.getViewport) {
-    currentViewport = currentIStyle.getViewport();
-  }
-
-  let currentSlabThickness;
-  if (currentIStyle.getSlabThickness && istyle.getSlabThickness) {
-    currentSlabThickness = currentIStyle.getSlabThickness();
-    defaultSlabThickness = currentSlabThickness;
-  }
-
-  const interactor = renderWindow.getInteractor();
-
-  interactor.setInteractorStyle(istyle);
-
-  // TODO: Not sure why this is required the second time this function is called
-  istyle.setInteractor(interactor);
-
-  if (currentViewport) {
-    istyle.setViewport(currentViewport);
-  }
-
-  if (istyle.getVolumeMapper() !== api.volumes[0]) {
-    if (currentSlabThickness) {
-      istyle.setSlabThickness(currentSlabThickness);
-    }
-
-    istyle.setVolumeMapper(api.volumes[0]);
-  }
-}
-
 const actions = {
   axial: async ({ viewports }) => {
     const api = await _getActiveViewportVTKApi(viewports);
@@ -175,52 +89,56 @@ const actions = {
     apis.forEach(api => {
       const istyle = vtkInteractorStyleMPRRotate.newInstance();
 
-      switchMPRInteractors(api, istyle);
+      api.setInteractorStyle({ istyle });
     });
   },
   enableCrosshairsTool: () => {
-    apis.forEach((api, index) => {
+    apis.forEach((api, apiIndex) => {
       const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
 
-      switchMPRInteractors(api, istyle);
-
-      istyle.setCallback(getCrosshairCallbackForIndex(index));
+      api.setInteractorStyle({
+        istyle,
+        configuration: { apis, apiIndex },
+      });
     });
   },
   enableLevelTool: () => {
+    function updateVOI(apis, windowWidth, windowCenter) {
+      apis.forEach(api => {
+        api.updateVOI(windowWidth, windowCenter);
+      });
+    }
+
+    const throttledUpdateVOIs = throttle(updateVOI, 16, { trailing: true }); // ~ 60 fps
+
+    const callbacks = {
+      setOnLevelsChanged: ({ windowCenter, windowWidth }) => {
+        apis.forEach(api => {
+          const renderWindow = api.genericRenderWindow.getRenderWindow();
+
+          renderWindow.render();
+        });
+
+        throttledUpdateVOIs(apis, windowWidth, windowCenter);
+      },
+    };
+
     apis.forEach(api => {
       const istyle = vtkInteractorStyleMPRWindowLevel.newInstance();
 
-      switchMPRInteractors(api, istyle);
+      api.setInteractorStyle({ istyle, callbacks });
     });
   },
   setSlabThickness: ({ slabThickness }) => {
-    currentSlabThickness = slabThickness;
-
     apis.forEach(api => {
-      const renderWindow = api.genericRenderWindow.getRenderWindow();
-      const istyle = renderWindow.getInteractor().getInteractorStyle();
-
-      if (istyle.setSlabThickness) {
-        istyle.setSlabThickness(currentSlabThickness);
-      }
-
-      renderWindow.render();
+      api.setSlabThickness(slabThickness);
     });
   },
   changeSlabThickness: ({ change }) => {
-    currentSlabThickness += change;
-    currentSlabThickness = Math.max(currentSlabThickness, 0.1);
-
     apis.forEach(api => {
-      const renderWindow = api.genericRenderWindow.getRenderWindow();
-      const istyle = renderWindow.getInteractor().getInteractorStyle();
+      const slabThickness = Math.max(api.getSlabThickness() + change, 0.1);
 
-      if (istyle.setSlabThickness) {
-        istyle.setSlabThickness(currentSlabThickness);
-      }
-
-      renderWindow.render();
+      api.setSlabThickness(slabThickness);
     });
   },
   setBlendModeToComposite: () => {
@@ -228,13 +146,15 @@ const actions = {
       const renderWindow = api.genericRenderWindow.getRenderWindow();
       const istyle = renderWindow.getInteractor().getInteractorStyle();
 
+      const slabThickness = api.getSlabThickness();
+
       const mapper = api.volumes[0].getMapper();
       if (mapper.setBlendModeToComposite) {
         mapper.setBlendModeToComposite();
       }
 
       if (istyle.setSlabThickness) {
-        istyle.setSlabThickness(defaultSlabThickness);
+        istyle.setSlabThickness(slabThickness);
       }
       renderWindow.render();
     });
@@ -252,7 +172,6 @@ const actions = {
   setBlendMode: ({ blendMode }) => {
     apis.forEach(api => {
       const renderWindow = api.genericRenderWindow.getRenderWindow();
-      const istyle = renderWindow.getInteractor().getInteractorStyle();
 
       api.volumes[0].getMapper().setBlendMode(blendMode);
 
@@ -264,28 +183,8 @@ const actions = {
     const displaySet =
       viewports.viewportSpecificData[viewports.activeViewportIndex];
 
-    // TODO -> Clean this logic up a bit.
-    const cornerstoneElement = cornerstone.getEnabledElement(displaySet.dom);
-
-    let cornerstoneVOI;
-
-    if (cornerstoneElement) {
-      const imageId = cornerstoneElement.image.imageId;
-
-      const { modality } = cornerstone.metaData.get(
-        'generalSeriesModule',
-        imageId
-      );
-
-      if (modality !== 'PT') {
-        const { windowWidth, windowCenter } = cornerstoneElement.viewport.voi;
-
-        cornerstoneVOI = {
-          windowWidth,
-          windowCenter,
-        };
-      }
-    }
+    // Get current VOI if cornerstone viewport.
+    const cornerstoneVOI = getVOIFromCornerstoneViewport(displaySet);
 
     const viewportProps = [
       {
@@ -295,7 +194,6 @@ const actions = {
           viewUp: [0, -1, 0],
         },
       },
-
       {
         // Sagital
         orientation: {
@@ -312,77 +210,29 @@ const actions = {
       },
     ];
 
-    let apiByViewport;
     try {
-      apiByViewport = await setMPRLayout(displaySet, viewportProps);
+      apis = await setMPRLayout(displaySet, viewportProps, 1, 3);
     } catch (error) {
       throw new Error(error);
     }
 
-    apis = apiByViewport;
-
-    const rgbTransferFunction = apiByViewport[0].volumes[0]
-      .getProperty()
-      .getRGBTransferFunction(0);
-
     if (cornerstoneVOI) {
-      const { windowWidth, windowCenter } = cornerstoneVOI;
-      const lower = windowCenter - windowWidth / 2.0;
-      const upper = windowCenter + windowWidth / 2.0;
-
-      rgbTransferFunction.setRange(lower, upper);
-
-      apiByViewport.forEach(api => {
-        api.updateVOI(windowWidth, windowCenter);
-      });
+      setVOI(cornerstoneVOI);
     }
 
-    const onModifiedSubscription = rgbTransferFunction.onModified(() => {
-      const range = rgbTransferFunction.getMappingRange();
-      const windowWidth = Math.abs(range[1] - range[0]);
-      const windowCenter = range[0] + windowWidth / 2;
-
-      apiByViewport.forEach(api => {
-        const renderWindow = api.genericRenderWindow.getRenderWindow();
-
-        renderWindow.render();
-
-        api.updateVOI(windowWidth, windowCenter);
-      });
-    });
-
-    vtkViewportSubscriptionManager.pushSubscription(0, onModifiedSubscription);
-
-    apiByViewport.forEach((api, index) => {
-      const renderWindow = api.genericRenderWindow.getRenderWindow();
-      const renderer = api.genericRenderWindow.getRenderer();
+    // Add widgets and set default interactorStyle of each viewport.
+    apis.forEach((api, apiIndex) => {
+      api.addSVGWidget(
+        vtkSVGCrosshairsWidget.newInstance(),
+        'crosshairsWidget'
+      );
 
       const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
-      renderWindow.getInteractor().setInteractorStyle(istyle);
 
-      istyle.setVolumeMapper(api.volumes[0]);
-      istyle.setCallback(getCrosshairCallbackForIndex(index));
-
-      const svgWidgetManager = vtkSVGWidgetManager.newInstance();
-      svgWidgetManager.setRenderer(renderer);
-      svgWidgetManager.setScale(1);
-
-      const crosshairsWidget = vtkSVGCrosshairsWidget.newInstance();
-
-      svgWidgetManager.addWidget(crosshairsWidget);
-      svgWidgetManager.render();
-
-      api.svgWidgetManager = svgWidgetManager;
-      api.svgWidgets = {
-        crosshairsWidget,
-      };
-
-      const orientation = api.getOrientation();
-
-      istyle.setViewUp(...orientation.viewUp);
-      istyle.setSliceNormal(...orientation.sliceNormal);
-
-      renderWindow.render();
+      api.setInteractorStyle({
+        istyle,
+        configuration: { apis, apiIndex },
+      });
     });
   },
 };
@@ -472,3 +322,41 @@ export default {
   definitions,
   defaultContext: 'ACTIVE_VIEWPORT::VTK',
 };
+
+function getVOIFromCornerstoneViewport(displaySet) {
+  const cornerstoneElement = cornerstone.getEnabledElement(displaySet.dom);
+
+  if (cornerstoneElement) {
+    const imageId = cornerstoneElement.image.imageId;
+
+    const { modality } = cornerstone.metaData.get(
+      'generalSeriesModule',
+      imageId
+    );
+
+    if (modality !== 'PT') {
+      const { windowWidth, windowCenter } = cornerstoneElement.viewport.voi;
+
+      return {
+        windowWidth,
+        windowCenter,
+      };
+    }
+  }
+}
+
+function setVOI(voi) {
+  const { windowWidth, windowCenter } = voi;
+  const lower = windowCenter - windowWidth / 2.0;
+  const upper = windowCenter + windowWidth / 2.0;
+
+  const rgbTransferFunction = apis[0].volumes[0]
+    .getProperty()
+    .getRGBTransferFunction(0);
+
+  rgbTransferFunction.setRange(lower, upper);
+
+  apis.forEach(api => {
+    api.updateVOI(windowWidth, windowCenter);
+  });
+}

extensions/vtk/src/utils/setMPRLayout.js

@@ -4,7 +4,7 @@ export default function setMPRLayout(
   displaySet,
   viewportPropsArray,
   numRows = 1,
-  numColumns = 3
+  numColumns = 1
 ) {
   return new Promise((resolve, reject) => {
     const viewports = [];

extensions/vtk/src/utils/vtkViewportSubscriptionManager.js

@@ -1,28 +0,0 @@
-const subscriptions = [];
-
-// This is pretty hacky right now, but it makes sure we don't keep adding subscriptions.
-// TODO -> Nuke this and move it up a layer once we have more vigorous layout support.
-
-const vtkViewportSubscriptionManager = {
-  subscriptions,
-  pushSubscription(viewportIndex, subscription) {
-    if (!Array.isArray(subscriptions[viewportIndex])) {
-      subscriptions[viewportIndex] = [];
-    }
-
-    subscriptions[viewportIndex].push(subscription);
-  },
-  unsubscribe(viewportIndex) {
-    if (!subscriptions[viewportIndex]) {
-      return;
-    }
-
-    while (subscriptions[viewportIndex].length) {
-      subscriptions[viewportIndex].pop().unsubscribe();
-    }
-
-    subscriptions[viewportIndex] = null;
-  },
-};
-
-export default vtkViewportSubscriptionManager;

platform/ui/CHANGELOG.md

@@ -3,6 +3,17 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [0.56.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.55.0...@ohif/ui@0.56.0) (2019-10-22)
+
+
+### Features
+
+* 🎸 Load spinner when selecting gcloud store. Add key on td ([#1034](https://github.com/OHIF/Viewers/issues/1034)) ([e62f403](https://github.com/OHIF/Viewers/commit/e62f403fe9e3df56713128e3d59045824b086d8d)), closes [#1057](https://github.com/OHIF/Viewers/issues/1057)
+
+
+
+
+
 # [0.55.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.54.0...@ohif/ui@0.55.0) (2019-10-15)
 
 

platform/ui/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/ui",
-  "version": "0.55.0",
+  "version": "0.56.0",
   "description": "A set of React components for Medical Imaging Viewers",
   "author": "OHIF Contributors",
   "license": "MIT",

platform/ui/src/components/studyList/StudyList.js

@@ -11,11 +11,79 @@ import { StudylistToolbar } from './StudyListToolbar.js';
 import { isInclusivelyBeforeDay } from 'react-dates';
 import moment from 'moment';
 import debounce from 'lodash.debounce';
+import isEqual from 'lodash.isequal';
 import { withTranslation } from '../../utils/LanguageProvider';
 
 const today = moment();
 const lastWeek = moment().subtract(7, 'day');
 const lastMonth = moment().subtract(1, 'month');
+function getPaginationFragment(
+  props,
+  searchData,
+  nextPageCb,
+  prevPageCb,
+  changeRowsPerPageCb
+) {
+  return (
+    <PaginationArea
+      pageOptions={props.pageOptions}
+      currentPage={searchData.currentPage}
+      nextPageFunc={nextPageCb}
+      prevPageFunc={prevPageCb}
+      onRowsPerPageChange={changeRowsPerPageCb}
+      rowsPerPage={searchData.rowsPerPage}
+      recordCount={props.studies.length}
+    />
+  );
+}
+
+function getTableMeta(translate) {
+  return {
+    patientName: {
+      displayText: translate('PatientName'),
+      sort: 0,
+    },
+    patientId: {
+      displayText: translate('MRN'),
+      sort: 0,
+    },
+    accessionNumber: {
+      displayText: translate('AccessionNumber'),
+      sort: 0,
+    },
+    studyDate: {
+      displayText: translate('StudyDate'),
+      inputType: 'date-range',
+      sort: 0,
+    },
+    modalities: {
+      displayText: translate('Modality'),
+      sort: 0,
+    },
+    studyDescription: {
+      displayText: translate('StudyDescription'),
+      sort: 0,
+    },
+  };
+}
+
+function getNoListFragment(translate, studies, error, loading) {
+  if (loading) {
+    return (
+      <div className="loading">
+        <StudyListLoadingText />
+      </div>
+    );
+  } else if (error) {
+    return (
+      <div className="notFound">
+        {translate('There was an error fetching studies')}
+      </div>
+    );
+  } else if (!studies.length) {
+    return <div className="notFound">{translate('No matching results')}</div>;
+  }
+}
 
 class StudyList extends Component {
   static propTypes = {
@@ -111,24 +179,27 @@ class StudyList extends Component {
   getBlurHandler(key) {
     return event => {
       this.delayedSearch.cancel();
-      this.setSearchData(key, event.target.value, this.search);
+      this.setSearchData(key, event.target.value);
     };
   }
 
-  setSearchData(key, value, callback) {
-    const searchData = this.state.searchData;
+  setSearchData(key, value) {
+    const searchData = { ...this.state.searchData };
     searchData[key] = value;
-    this.setState({ searchData }, callback);
+
+    if (!isEqual(searchData[key], this.state.searchData[key])) {
+      this.setState({ ...this.state, searchData });
+    }
   }
 
-  setSearchDataBatch(keyValues, callback) {
-    const searchData = this.state.searchData;
+  setSearchDataBatch(keyValues) {
+    const searchData = { ...this.state.searchData };
 
     Object.keys(keyValues).forEach(key => {
       searchData[key] = keyValues[key];
     });
 
-    this.setState({ searchData }, callback);
+    this.setState({ searchData });
   }
 
   async onInputKeydown(event) {
@@ -138,7 +209,7 @@ class StudyList extends Component {
 
       this.delayedSearch.cancel();
       // reset the page because user is doing a new search
-      this.setSearchData('currentPage', 0, this.search);
+      this.setSearchData('currentPage', 0);
     }
   }
 
@@ -154,45 +225,21 @@ class StudyList extends Component {
     }
   }
 
-  renderNoMachingResults() {
-    if (!this.props.studies.length && !this.state.error) {
-      return <div className="notFound">No matching results</div>;
-    }
-  }
-
-  renderHasError() {
-    if (this.state.error) {
-      return (
-        <div className="notFound">There was an error fetching studies</div>
-      );
-    }
-  }
-
-  renderIsLoading() {
-    if (this.state.loading) {
-      return (
-        <div className="loading">
-          <StudyListLoadingText />
-        </div>
-      );
-    }
-  }
-
   nextPage(currentPage) {
     currentPage = currentPage + 1;
     this.delayedSearch.cancel();
-    this.setSearchData('currentPage', currentPage, this.search);
+    this.setSearchData('currentPage', currentPage);
   }
 
   prevPage(currentPage) {
     currentPage = currentPage - 1;
     this.delayedSearch.cancel();
-    this.setSearchData('currentPage', currentPage, this.search);
+    this.setSearchData('currentPage', currentPage);
   }
 
   onRowsPerPageChange(rowsPerPage) {
     this.delayedSearch.cancel();
-    this.setSearchDataBatch({ rowsPerPage, currentPage: 0 }, this.search);
+    this.setSearchDataBatch({ rowsPerPage, currentPage: 0 });
   }
 
   onSortClick(field) {
@@ -213,7 +260,7 @@ class StudyList extends Component {
       }
 
       this.delayedSearch.cancel();
-      this.setSearchData('sortData', { field, order }, this.search);
+      this.setSearchData('sortData', { field, order });
     };
   }
 
@@ -221,10 +268,39 @@ class StudyList extends Component {
     this.setState({ highlightedItem: studyItemUid });
   }
 
-  renderTableRow(study) {
+  getTableRow(study, index) {
+    const trKey = `trStudy${index}${study.studyInstanceUid}`;
+
+    if (!study) {
+      return;
+    }
+
+    const getTableCell = (
+      study,
+      studyKey,
+      emptyValue = '',
+      emptyClass = ''
+    ) => {
+      const componentKey = `td${studyKey}`;
+      const isValidValue = study && typeof study[studyKey] === 'string';
+      let className = emptyClass;
+      let value = emptyValue;
+
+      if (isValidValue) {
+        className = studyKey;
+        value = study[studyKey];
+      }
+
+      return (
+        <td key={componentKey} className={className}>
+          {value}
+        </td>
+      );
+    };
+
     return (
       <tr
-        key={study.studyInstanceUid}
+        key={trKey}
         className={
           this.state.highlightedItem === study.studyInstanceUid
             ? 'studylistStudy noselect active'
@@ -241,47 +317,35 @@ class StudyList extends Component {
           this.props.onSelectItem(study.studyInstanceUid);
         }}
       >
-        <td className={study.patientName ? 'patientName' : 'emptyCell'}>
-          {study.patientName || `(${this.props.t('Empty')})`}
-        </td>
-
-        <td className="patientId">{study.patientId}</td>
-        <td className="accessionNumber">{study.accessionNumber}</td>
-        <td className="studyDate">{study.studyDate}</td>
-        <td className="modalities">{study.modalities}</td>
-        <td className="studyDescription">{study.studyDescription}</td>
+        {getTableCell(
+          study,
+          'patientName',
+          `(${this.props.t('Empty')})`,
+          'emptyCell'
+        )}
+        {getTableCell(study, 'patientId')}
+        {getTableCell(study, 'accessionNumber')}
+        {getTableCell(study, 'studyDate')}
+        {getTableCell(study, 'modalities')}
+        {getTableCell(study, 'studyDescription')}
       </tr>
     );
   }
 
+  componentDidUpdate(previousProps, previousState) {
+    if (!isEqual(previousState.searchData, this.state.searchData)) {
+      this.search();
+    }
+  }
+
+  renderTableBody(noListFragment) {
+    return !noListFragment && this.props.studies
+      ? this.props.studies.map(this.getTableRow.bind(this))
+      : null;
+  }
+
   render() {
-    const tableMeta = {
-      patientName: {
-        displayText: this.props.t('PatientName'),
-        sort: 0,
-      },
-      patientId: {
-        displayText: this.props.t('MRN'),
-        sort: 0,
-      },
-      accessionNumber: {
-        displayText: this.props.t('AccessionNumber'),
-        sort: 0,
-      },
-      studyDate: {
-        displayText: this.props.t('StudyDate'),
-        inputType: 'date-range',
-        sort: 0,
-      },
-      modalities: {
-        displayText: this.props.t('Modality'),
-        sort: 0,
-      },
-      studyDescription: {
-        displayText: this.props.t('StudyDescription'),
-        sort: 0,
-      },
-    };
+    const tableMeta = getTableMeta(this.props.t);
 
     // Apply sort
     const sortedFieldName = this.state.searchData.sortData.field;
@@ -294,14 +358,20 @@ class StudyList extends Component {
 
     // Sort Icons
     const sortIcons = ['sort', 'sort-up', 'sort-down'];
+    const noListFragment = getNoListFragment(
+      this.props.t,
+      this.props.studies,
+      this.state.error,
+      this.props.loading || this.state.loading
+    );
+    const tableBody = this.renderTableBody(noListFragment);
+    const studiesNum = (this.props.studies && this.props.studies.length) || 0;
 
     return (
       <div className="StudyList">
         <div className="studyListToolbar clearfix">
           <div className="header pull-left">{this.props.t('StudyList')}</div>
-          <div className="studyCount pull-right">
-            {this.props.studies.length}
-          </div>
+          <div className="studyCount pull-right">{studiesNum}</div>
           <div className="pull-right">
             {this.props.studyListFunctionsEnabled ? (
               <StudylistToolbar onImport={this.props.onImport} />
@@ -367,22 +437,16 @@ class StudyList extends Component {
                                   (this.state.focusedInput === 'endDate' ||
                                     preset)
                                 ) {
-                                  this.setSearchDataBatch(
-                                    {
-                                      studyDateFrom: startDate.toDate(),
-                                      studyDateTo: endDate.toDate(),
-                                    },
-                                    this.search
-                                  );
+                                  this.setSearchDataBatch({
+                                    studyDateFrom: startDate.toDate(),
+                                    studyDateTo: endDate.toDate(),
+                                  });
                                   this.setState({ focusedInput: false });
                                 } else if (!startDate && !endDate) {
-                                  this.setSearchDataBatch(
-                                    {
-                                      studyDateFrom: null,
-                                      studyDateTo: null,
-                                    },
-                                    this.search
-                                  );
+                                  this.setSearchDataBatch({
+                                    studyDateFrom: null,
+                                    studyDateTo: null,
+                                  });
                                 }
                               }}
                               focusedInput={this.state.focusedInput}
@@ -398,26 +462,18 @@ class StudyList extends Component {
                 })}
               </tr>
             </thead>
-            <tbody id="studyListData">
-              {this.props.studies.map(study => {
-                return this.renderTableRow(study);
-              })}
-            </tbody>
+            <tbody id="studyListData">{tableBody}</tbody>
           </table>
 
-          {this.renderIsLoading()}
-          {this.renderHasError()}
-          {this.renderNoMachingResults()}
-
-          <PaginationArea
-            pageOptions={this.props.pageOptions}
-            currentPage={this.state.searchData.currentPage}
-            nextPageFunc={this.nextPage}
-            prevPageFunc={this.prevPage}
-            onRowsPerPageChange={this.onRowsPerPageChange}
-            rowsPerPage={this.state.searchData.rowsPerPage}
-            recordCount={this.props.studies.length}
-          />
+          {noListFragment
+            ? noListFragment
+            : getPaginationFragment(
+                this.props,
+                this.state.searchData,
+                this.nextPage,
+                this.prevPage,
+                this.onRowsPerPageChange
+              )}
         </div>
       </div>
     );

platform/ui/src/components/studyList/StudyList.styl

@@ -82,9 +82,14 @@ placeholder-color(c)
   position: absolute
   z-index: 2
 
-  .loading-text
-    color: var(--table-text-secondary-color)
-    font-size: 30px
+  .loading
+    display: flex;
+    justify-content: center;
+
+    .loading-text
+      color: var(--table-text-secondary-color)
+      font-size: 30px
+      width: fit-content;
 
   .notFound
     color: var(--table-text-secondary-color)

platform/ui/src/components/studyList/StudyListLoadingText.js

@@ -1,12 +1,17 @@
 import { Icon } from './../../elements/Icon';
 import React from 'react';
+import { withTranslation } from '../../utils/LanguageProvider';
 
-function StudyListLoadingText() {
+function StudyListLoadingText({ t: translate }) {
   return (
     <div className="loading-text">
-      Loading... <Icon name="circle-notch" animation="pulse" />
+      {translate('Loading')}... <Icon name="circle-notch" animation="pulse" />
     </div>
   );
 }
 
-export { StudyListLoadingText };
+const connectedComponent = withTranslation('StudyListLoadingText')(
+  StudyListLoadingText
+);
+
+export { connectedComponent as StudyListLoadingText };

platform/viewer/CHANGELOG.md

@@ -3,6 +3,57 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.11.3](https://github.com/OHIF/Viewers/compare/@ohif/viewer@1.11.2...@ohif/viewer@1.11.3) (2019-10-23)
+
+
+### Bug Fixes
+
+* 🐛 Switch to orhtographic view for 2D MPR ([#1074](https://github.com/OHIF/Viewers/issues/1074)) ([13d337a](https://github.com/OHIF/Viewers/commit/13d337aaabb8dadf6366c6262c5e47e7781edd08))
+
+
+
+
+
+## [1.11.2](https://github.com/OHIF/Viewers/compare/@ohif/viewer@1.11.1...@ohif/viewer@1.11.2) (2019-10-23)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [1.11.1](https://github.com/OHIF/Viewers/compare/@ohif/viewer@1.11.0...@ohif/viewer@1.11.1) (2019-10-23)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+# [1.11.0](https://github.com/OHIF/Viewers/compare/@ohif/viewer@1.10.3...@ohif/viewer@1.11.0) (2019-10-22)
+
+
+### Bug Fixes
+
+* MPR initialization ([#1062](https://github.com/OHIF/Viewers/issues/1062)) ([b037394](https://github.com/OHIF/Viewers/commit/b03739428f72bb50bdabdd6f83b7af885057da69))
+
+
+### Features
+
+* 🎸 Load spinner when selecting gcloud store. Add key on td ([#1034](https://github.com/OHIF/Viewers/issues/1034)) ([e62f403](https://github.com/OHIF/Viewers/commit/e62f403fe9e3df56713128e3d59045824b086d8d)), closes [#1057](https://github.com/OHIF/Viewers/issues/1057)
+
+
+
+
+
+## [1.10.3](https://github.com/OHIF/Viewers/compare/@ohif/viewer@1.10.2...@ohif/viewer@1.10.3) (2019-10-18)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
 ## [1.10.2](https://github.com/OHIF/Viewers/compare/@ohif/viewer@1.10.1...@ohif/viewer@1.10.2) (2019-10-18)
 
 **Note:** Version bump only for package @ohif/viewer

platform/viewer/cypress.json

@@ -2,5 +2,9 @@
   "baseUrl": "http://localhost:3000",
   "video": false,
   "chromeWebSecurity": false,
+  "waitForAnimations": true,
+  "defaultCommandTimeout": 10000,
+  "requestTimeout": 10000,
+  "responseTimeout": 10000,
   "projectId": "4oe38f"
 }

platform/viewer/cypress/integration/common/OHIFCornerstoneToolbar.spec.js

@@ -2,7 +2,7 @@ describe('OHIF Cornerstone Toolbar', () => {
   before(() => {
     cy.openStudy('MISTER^MR');
     cy.waitDicomImage();
-    cy.expectMinimumThumbnails(1);
+    cy.expectMinimumThumbnails(3);
   });
 
   beforeEach(() => {
@@ -57,12 +57,11 @@ describe('OHIF Cornerstone Toolbar', () => {
 
     //drags the mouse inside the viewport to be able to interact with series
     cy.get('@viewport')
-      .trigger('mousedown', 'top', { which: 1 })
-      .trigger('mousemove', 'center', { which: 1 })
+      .trigger('mousedown', 'center', { which: 1 })
+      .trigger('mousemove', 'top', { which: 1 })
       .trigger('mouseup');
-
     const expectedText =
-      'Ser: 1Img: 14 14/26256 x 256Loc: 0.00 mm Thick: 5.00 mm';
+      'Ser: 1Img: 1 1/26256 x 256Loc: -30.00 mm Thick: 5.00 mm';
     cy.get('@viewportInfoBottomLeft').should('have.text', expectedText);
   });
 
@@ -76,11 +75,11 @@ describe('OHIF Cornerstone Toolbar', () => {
 
     //drags the mouse inside the viewport to be able to interact with series
     cy.get('@viewport')
-      .trigger('mousedown', 'top', { which: 1 })
-      .trigger('mousemove', 'center', { which: 1 })
+      .trigger('mousedown', 'center', { which: 1 })
+      .trigger('mousemove', 'top', { which: 1 })
       .trigger('mouseup');
 
-    const expectedText = 'Zoom: 884%W: 820 L: 410Lossless / Uncompressed';
+    const expectedText = 'Zoom: 50%W: 958 L: 479Lossless / Uncompressed';
     cy.get('@viewportInfoBottomRight').should('have.text', expectedText);
   });
 
@@ -94,14 +93,14 @@ describe('OHIF Cornerstone Toolbar', () => {
 
     //drags the mouse inside the viewport to be able to interact with series
     cy.get('@viewport')
-      .trigger('mousedown', 'top', { which: 1 })
-      .trigger('mousemove', 'center', { which: 1 })
+      .trigger('mousedown', 'center', { which: 1 })
+      .trigger('mousemove', 'top', { which: 1 })
       .trigger('mouseup')
       .trigger('mousedown', 'center', { which: 1 })
       .trigger('mousemove', 'left', { which: 1 })
       .trigger('mouseup');
 
-    const expectedText = 'Zoom: 211%W: 544 L: 626Lossless / Uncompressed';
+    const expectedText = 'Zoom: 211%W: 635 L: 226Lossless / Uncompressed';
     cy.get('@viewportInfoBottomRight').should('have.text', expectedText);
   });
 
@@ -197,11 +196,14 @@ describe('OHIF Cornerstone Toolbar', () => {
     //Click on reset button
     cy.get('@resetBtn').click();
 
-    const expectedText = 'Zoom: 211%W: 820 L: 410Lossless / Uncompressed';
+    const expectedText = 'Zoom: 211%W: 958 L: 479Lossless / Uncompressed';
     cy.get('@viewportInfoBottomRight').should('have.text', expectedText);
   });
 
   it('checks if CINE tool will prompt a modal with working controls', () => {
+    cy.server();
+    cy.route('GET', '/**/studies/**/').as('studies');
+
     //Click on button
     cy.get('@cineBtn').click();
     //Vefiry if cine control overlay is being displayed
@@ -216,26 +218,49 @@ describe('OHIF Cornerstone Toolbar', () => {
       .click();
 
     let expectedText = 'Img: 1 1/26';
-    cy.get('@viewportInfoBottomLeft').should('not.have.text', expectedText);
+    cy.get('@viewportInfoBottomLeft', { timeout: 15000 }).should(
+      'not.have.text',
+      expectedText
+    );
 
     //Test SKIP TO FIRST IMAGE button
-    cy.get('[title="Skip to first Image"]').click();
-    cy.get('@viewportInfoBottomLeft').should('contain.text', expectedText);
+    cy.get('[title="Skip to first Image"]')
+      .click()
+      .wait(1000);
+    cy.get('@viewportInfoBottomLeft', { timeout: 15000 }).should(
+      'contain.text',
+      expectedText
+    );
 
     //Test NEXT IMAGE button
-    cy.get('[title="Next Image"]').click();
+    cy.get('[title="Next Image"]')
+      .click()
+      .wait(1000);
     expectedText = 'Img: 2 2/26';
-    cy.get('@viewportInfoBottomLeft').should('contain.text', expectedText);
+    cy.get('@viewportInfoBottomLeft', { timeout: 15000 }).should(
+      'contain.text',
+      expectedText
+    );
 
     //Test SKIP TO LAST IMAGE button
-    cy.get('[title="Skip to last Image"]').click();
+    cy.get('[title="Skip to last Image"]')
+      .click()
+      .wait(2000);
     expectedText = 'Img: 27 26/26';
-    cy.get('@viewportInfoBottomLeft').should('contain.text', expectedText);
+    cy.get('@viewportInfoBottomLeft', { timeout: 15000 }).should(
+      'contain.text',
+      expectedText
+    );
 
     //Test PREVIOUS IMAGE button
-    cy.get('[title="Previous Image"]').click();
+    cy.get('[title="Previous Image"]')
+      .click()
+      .wait(1000);
     expectedText = 'Img: 26 25/26';
-    cy.get('@viewportInfoBottomLeft').should('contain.text', expectedText);
+    cy.get('@viewportInfoBottomLeft', { timeout: 15000 }).should(
+      'contain.text',
+      expectedText
+    );
 
     //Click on Cine button
     cy.get('@cineBtn').click();

platform/viewer/cypress/integration/common/OHIFStandaloneViewer.spec.js

@@ -1,6 +1,6 @@
 describe('OHIFStandaloneViewer', () => {
   beforeEach(() => {
-    cy.visit('/');
+    cy.openStudyList();
   });
 
   it('loads route with at least 2 rows', () => {
@@ -13,7 +13,11 @@ describe('OHIFStandaloneViewer', () => {
   });
 
   it('first 2 rows has values', () => {
-    cy.get('#studyListData > :nth-child(1) > .patientId').should('be.visible');
-    cy.get('#studyListData > :nth-child(2) > .patientId').should('be.visible');
+    cy.get('#studyListData > :nth-child(1) > .patientId', {
+      timeout: 15000,
+    }).should('be.visible');
+    cy.get('#studyListData > :nth-child(2) > .patientId', {
+      timeout: 15000,
+    }).should('be.visible');
   });
 });

platform/viewer/cypress/integration/common/OHIFStudyViewer.spec.js

@@ -2,7 +2,7 @@ describe('OHIF Study Viewer Page', () => {
   before(() => {
     cy.openStudy('MISTER^MR');
     cy.waitDicomImage();
-    cy.expectMinimumThumbnails(1);
+    cy.expectMinimumThumbnails(6);
   });
 
   beforeEach(() => {
@@ -14,13 +14,13 @@ describe('OHIF Study Viewer Page', () => {
     cy.screenshot();
     cy.percySnapshot();
 
-    cy.get('.ThumbnailEntryContainer')
+    cy.get('[data-cy="thumbnail-list"]')
       .its('length')
       .should('be.gt', 1);
   });
 
   it('drags and drop a series thumbnail into viewport', () => {
-    cy.get('.ThumbnailEntryContainer:nth-child(2)') //element to be dragged
+    cy.get('[data-cy="thumbnail-list"]:nth-child(2)') //element to be dragged
       .drag('.cornerstone-canvas'); //dropzone element
 
     const expectedText =

platform/viewer/cypress/integration/pwa/OHIFExtensionHTML.spec.js

@@ -1,7 +1,7 @@
 describe('OHIF HTML Extension', () => {
   before(() => {
     cy.openStudy('Dummy');
-    cy.expectMinimumThumbnails(1);
+    cy.expectMinimumThumbnails(5);
   });
 
   it('checks if series thumbnails are being displayed', () => {
@@ -14,6 +14,7 @@ describe('OHIF HTML Extension', () => {
   it('drags and drop a SR thumbnail into viewport', () => {
     cy.get('[data-cy="thumbnail-list"]')
       .contains('SR')
+      .first()
       .drag('.viewport-drop-target');
 
     cy.get(':nth-child(2) > h1').should(

platform/viewer/cypress/integration/pwa/OHIFExtensionMicroscopy.spec.js

@@ -0,0 +1,27 @@
+describe('OHIF Microscopy Extension', () => {
+  before(() => {
+    cy.openStudyModality('SM');
+    cy.expectMinimumThumbnails(6);
+  });
+
+  it('checks if series thumbnails are being displayed', () => {
+    cy.get('[data-cy="thumbnail-list"]')
+      .contains('SM')
+      .its('length')
+      .should('to.be.at.least', 1);
+  });
+
+  it('drags and drop a SM thumbnail into viewport', () => {
+    cy.get('[data-cy="thumbnail-list"]')
+      .contains('SM')
+      .drag('.viewport-drop-target');
+
+    cy.get('.DicomMicroscopyViewer')
+      .its('length')
+      .should('be.eq', 1);
+
+    cy.wait(3000); //Waiting for image to render before taking the snapshot
+    cy.screenshot();
+    cy.percySnapshot();
+  });
+});

platform/viewer/cypress/integration/pwa/OHIFExtensionPDF.spec.js

@@ -1,7 +1,7 @@
 describe('OHIF PDF Extension', () => {
   before(() => {
     cy.openStudy('Dummy');
-    cy.expectMinimumThumbnails(1);
+    cy.expectMinimumThumbnails(6);
   });
 
   it('checks if series thumbnails are being displayed', () => {
@@ -19,5 +19,8 @@ describe('OHIF PDF Extension', () => {
     cy.get('.DicomPDFViewport')
       .its('length')
       .should('be.eq', 1);
+
+    cy.screenshot();
+    cy.percySnapshot();
   });
 });

platform/viewer/cypress/integration/pwa/OHIFExtensionVTK.spec.js

@@ -2,7 +2,7 @@ describe('OHIF VTK Extension', () => {
   before(() => {
     cy.openStudy('Juno');
     cy.waitDicomImage();
-    cy.expectMinimumThumbnails(1);
+    cy.expectMinimumThumbnails(7);
   });
 
   beforeEach(() => {
@@ -11,7 +11,7 @@ describe('OHIF VTK Extension', () => {
     // has data from a drag-n-drop
     // Drag and drop first thumbnail into first viewport
     cy.get('[data-cy="thumbnail-list"]:nth-child(3)').drag(
-      '.cornerstone-canvas'
+      '.viewport-drop-target'
     );
 
     cy.get('.PluginSwitch > .toolbar-button')
@@ -22,12 +22,15 @@ describe('OHIF VTK Extension', () => {
           btn.click();
         }
       });
-
+    //wait VTK toolbar and images to be loaded
+    cy.wait(3000);
     cy.initVTKToolsAliases();
-    cy.wait(1000);
   });
 
   it('checks if VTK buttons are displayed on the toolbar', () => {
+    cy.screenshot();
+    cy.percySnapshot();
+
     cy.get('@crosshairsBtn')
       .should('be.visible')
       .contains('Crosshairs');

platform/viewer/cypress/plugins/index.js

@@ -23,6 +23,12 @@ module.exports = (on, config) => {
       // whatever you return here becomes the new args
       return args;
     }
+
+    if (browser.name === 'chromium') {
+      const newArgs = args.filter(arg => arg !== '--disable-gpu');
+      newArgs.push('--ignore-gpu-blacklist');
+      return newArgs;
+    }
   });
 
   on('task', percyHealthCheck);

platform/viewer/cypress/support/aliases.js

@@ -35,7 +35,8 @@ export function initCommonElementsAliases() {
 //Creating aliases for Routes
 export function initRouteAliases() {
   cy.server();
-  cy.route('GET', '/dcm4chee-arc/**/series').as('getStudySeries');
+  cy.route('GET', '**/series**').as('getStudySeries');
+  cy.route('GET', '**/studies**').as('getStudies');
 }
 
 //Creating aliases for VTK tools buttons

platform/viewer/cypress/support/commands.js

@@ -39,19 +39,46 @@ import {
  * @param {string} PatientName - Patient name that we would like to search for
  */
 Cypress.Commands.add('openStudy', patientName => {
+  cy.openStudyList();
+  cy.get('#patientName').type(patientName);
+  cy.wait('@getStudies');
+  cy.get('#studyListData .studylistStudy', { timeout: 5000 })
+    .contains(patientName)
+    .first()
+    .click({ force: true });
+});
+
+/**
+ * Command to search for a modality and open the study.
+ *
+ * @param {string} modality - Modality type that we would like to search for
+ */
+Cypress.Commands.add('openStudyModality', modality => {
   cy.initRouteAliases();
   cy.visit('/');
-  cy.get('#patientName').type(patientName);
+  cy.get('#modalities')
+    .type(modality)
+    .wait(2000);
 
-  cy.get('.studylistStudy > .patientName', { timeout: 5000 })
-    .contains(patientName)
+  cy.get('#studyListData')
+    .contains(modality)
+    .first()
     .click();
+});
 
-  // cy.get('.studylistStudy > .patientName')
-  //   .as('patientResult')
-  //   .should({ timeout: 3000 }, () => {
-  //     cy.contains(patientName).click();
-  //   });
+/**
+ * Command to wait and check if a new page was loaded
+ *
+ * @param {string} url - part of the expected url. Default value is /viewer/
+ */
+Cypress.Commands.add('isPageLoaded', (url = '/viewer/') => {
+  return cy.location('pathname', { timeout: 60000 }).should('include', url);
+});
+
+Cypress.Commands.add('openStudyList', patientName => {
+  cy.initRouteAliases();
+  cy.visit('/');
+  cy.wait('@getStudies');
 });
 
 /**
@@ -119,31 +146,35 @@ Cypress.Commands.add('expectMinimumThumbnails', (seriesToWait = 1) => {
 
 //Command to wait DICOM image to load into the viewport
 Cypress.Commands.add('waitDicomImage', (timeout = 20000) => {
-  cy.window()
-    .its('cornerstone')
-    .then({ timeout }, $cornerstone => {
-      return new Cypress.Promise(resolve => {
-        const onEvent = renderedEvt => {
-          const element = renderedEvt.detail.element;
+  const loaded = cy.isPageLoaded();
 
-          element.removeEventListener('cornerstoneimagerendered', onEvent);
-          $cornerstone.events.removeEventListener(
-            'cornerstoneimagerendered',
-            onEvent
+  if (loaded) {
+    cy.window()
+      .its('cornerstone')
+      .then({ timeout }, $cornerstone => {
+        return new Cypress.Promise(resolve => {
+          const onEvent = renderedEvt => {
+            const element = renderedEvt.detail.element;
+
+            element.removeEventListener('cornerstoneimagerendered', onEvent);
+            $cornerstone.events.removeEventListener(
+              'cornerstoneimagerendered',
+              onEvent
+            );
+            resolve();
+          };
+          const onEnabled = enabledEvt => {
+            const element = enabledEvt.detail.element;
+
+            element.addEventListener('cornerstoneimagerendered', onEvent);
+          };
+          $cornerstone.events.addEventListener(
+            'cornerstoneelementenabled',
+            onEnabled
           );
-          resolve();
-        };
-        const onEnabled = enabledEvt => {
-          const element = enabledEvt.detail.element;
-
-          element.addEventListener('cornerstoneimagerendered', onEvent);
-        };
-        $cornerstone.events.addEventListener(
-          'cornerstoneelementenabled',
-          onEnabled
-        );
+        });
       });
-    });
+  }
 });
 
 //Command to reset and clear all the changes made to the viewport

platform/viewer/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/viewer",
-  "version": "1.10.2",
+  "version": "1.11.3",
   "description": "OHIF Viewer",
   "author": "OHIF Contributors",
   "license": "MIT",
@@ -27,7 +27,7 @@
     "dev:viewer": "yarn run dev",
     "start": "yarn run dev",
     "test:e2e": "cypress open",
-    "test:e2e:ci": "percy exec -- cypress run",
+    "test:e2e:ci": "percy exec -- cypress run --browser chrome",
     "test:e2e:dist": "start-server-and-test test:e2e:serve http://localhost:3000 test:e2e:ci",
     "test:e2e:serve": "serve -n -l 3000 -s dist",
     "test:unit": "jest --watchAll",
@@ -50,9 +50,9 @@
     "@ohif/extension-dicom-html": "^1.0.0",
     "@ohif/extension-dicom-microscopy": "^0.50.6",
     "@ohif/extension-dicom-pdf": "^1.0.0",
-    "@ohif/extension-vtk": "^0.52.12",
+    "@ohif/extension-vtk": "^0.52.16",
     "@ohif/i18n": "^0.51.0",
-    "@ohif/ui": "^0.55.0",
+    "@ohif/ui": "^0.56.0",
     "@tanem/react-nprogress": "^1.1.25",
     "classnames": "^2.2.6",
     "core-js": "^3.2.1",
@@ -82,7 +82,7 @@
     "redux-oidc": "3.1.x",
     "redux-thunk": "^2.3.0",
     "reselect": "^4.0.0",
-    "vtk.js": "^11.6.0"
+    "vtk.js": "^11.7.1"
   },
   "devDependencies": {
     "cypress": "^3.3.1",

platform/viewer/src/googleCloud/DicomStorePickerModal.js

@@ -22,6 +22,8 @@ class DicomStorePickerModal extends Component {
   handleEvent = data => {
     const servers = GoogleCloudUtilServers.getServers(data, data.dicomstore);
     this.props.setServers(servers);
+    // Force auto close
+    this.props.onClose();
   };
 
   render() {

platform/viewer/src/studylist/StudyListWithData.js

@@ -8,6 +8,7 @@ import { StudyList } from '@ohif/ui';
 import ConnectedHeader from '../connectedComponents/ConnectedHeader.js';
 import * as RoutesUtil from '../routes/routesUtil';
 import moment from 'moment';
+import isEqual from 'lodash.isequal';
 import ConnectedDicomFilesUploader from '../googleCloud/ConnectedDicomFilesUploader';
 import ConnectedDicomStorePicker from '../googleCloud/ConnectedDicomStorePicker';
 import filesToStudies from '../lib/filesToStudies.js';
@@ -20,8 +21,9 @@ import AppContext from '../context/AppContext';
 class StudyListWithData extends Component {
   static contextType = AppContext;
   state = {
-    searchData: {},
+    searchOutdated: true,
     studies: [],
+    searchingStudies: false,
     error: null,
     modalComponentId: null,
   };
@@ -62,6 +64,7 @@ class StudyListWithData extends Component {
     if (!this.props.server && appConfig.enableGoogleCloudAdapter) {
       this.setState({
         modalComponentId: 'DicomStorePicker',
+        searchOutdated: false,
       });
     } else {
       this.searchForStudies({
@@ -71,21 +74,33 @@ class StudyListWithData extends Component {
     }
   }
 
-  componentDidUpdate(prevProps) {
-    if (!this.state.searchData && !this.state.studies) {
-      this.searchForStudies();
-    }
-    if (this.props.server !== prevProps.server) {
-      this.setState({
-        modalComponentId: null,
-        searchData: null,
-        studies: null,
-      });
+  componentDidUpdate(prevProps, prevState) {
+    const hasNewServer = !isEqual(this.props.server, prevProps.server);
+
+    const { searchOutdated, searchingStudies } = this.state;
+
+    if (!searchingStudies) {
+      if (hasNewServer) {
+        const { appConfig = {} } = this.context;
+
+        const newState = {
+          searchOutdated: true,
+          studies: null,
+        };
+        if (appConfig.enableGoogleCloudAdapter) {
+          newState.modalComponentId = null;
+        }
+        this.setState(newState);
+      }
+
+      if (searchOutdated) {
+        this.searchForStudies();
+      }
     }
   }
 
   searchForStudies = (searchData = StudyListWithData.defaultSearchData) => {
-    const { server } = this.props;
+    const { server = {} } = this.props;
     const filter = {
       patientId: searchData.patientId,
       patientName: searchData.patientName,
@@ -105,7 +120,9 @@ class StudyListWithData extends Component {
     // TODO: add sorting
     const promise = OHIF.studies.searchStudies(server, filter);
 
-    // Render the viewer when the data is ready
+    this.setState({
+      searchingStudies: true,
+    });
     promise
       .then(studies => {
         if (!studies) {
@@ -150,11 +167,15 @@ class StudyListWithData extends Component {
 
         this.setState({
           studies: sortedStudies,
+          searchingStudies: false,
+          searchOutdated: false,
         });
       })
       .catch(error => {
         this.setState({
           error: true,
+          searchingStudies: false,
+          searchOutdated: false,
         });
 
         throw new Error(error);
@@ -208,8 +229,6 @@ class StudyListWithData extends Component {
 
     if (this.state.error) {
       return <div>Error: {JSON.stringify(this.state.error)}</div>;
-    } else if (this.state.studies === null && !this.state.modalComponentId) {
-      return <div>Loading...</div>;
     }
 
     let healthCareApiButtons = null;
@@ -240,8 +259,9 @@ class StudyListWithData extends Component {
 
     const studyList = (
       <div className="paginationArea">
-        {this.state.studies ? (
+        {this.state.studies || this.state.searchingStudies ? (
           <StudyList
+            loading={this.state.searchingStudies}
             studies={this.state.studies}
             studyListFunctionsEnabled={this.props.studyListFunctionsEnabled}
             onImport={this.onImport}