chore(release): publish [skip ci]

- @ohif/extension-vtk@0.52.31
 - @ohif/core@1.6.2
 - @ohif/ui@0.59.1
 - @ohif/viewer@2.4.1

.circleci/config.yml

@@ -13,50 +13,111 @@ version: 2.1
 ##
 orbs:
   codecov: codecov/codecov@1.0.5
-  cypress: cypress-io/cypress@1.10.0
+  cypress: cypress-io/cypress@1.11.0
 
 defaults: &defaults
   docker:
-    - image: circleci/node:10.16.0
+    - image: circleci/node:12.9.1
       environment:
         TERM: xterm # Enable colors in term
   working_directory: ~/repo
 
 jobs:
-  CHECKOUT:
+  UNIT_TESTS:
     <<: *defaults
     steps:
+      # Update yarn
+      - run: yarn -v
+      #- run: rm -rf ~/.yarn && npm i -g yarn && yarn -v
+
       # Enable yarn workspaces
       - run: yarn config set workspaces-experimental true
+
       # Checkout code and ALL Git Tags
       - checkout:
           post:
             - git fetch --all
+
       - restore_cache:
           name: Restore Yarn and Cypress Package Cache
           keys:
             # when lock file changes, use increasingly general patterns to restore cache
-            - yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
-            - yarn-packages-v1-{{ .Branch }}-
-            - yarn-packages-v1-
+            - yarn-packages-{{ checksum "yarn.lock" }}
+            - yarn-packages-
+
       - run:
           name: Install Dependencies
           command: yarn install --frozen-lockfile
+
       - save_cache:
           name: Save Yarn Package Cache
           paths:
             - ~/.cache ## Cache yarn and Cypress
-          key: yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
-      # Persist :+1:
-      - persist_to_workspace:
-          root: ~/repo
-          paths: .
+          key: yarn-packages-{{ checksum "yarn.lock" }}
 
-  UNIT_TESTS:
+      # RUN TESTS
+      - run:
+          name: 'JavaScript Test Suite'
+          command: yarn run test:unit:ci
+
+      # PLATFORM/VIEWER
+      - run:
+          name: 'VIEWER: Combine report output'
+          command: |
+            viewerCov="/home/circleci/repo/platform/viewer/coverage"
+            touch "${viewerCov}/reports"
+            cat "${viewerCov}/clover.xml" >> "${viewerCov}/reports"
+            echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
+            cat "${viewerCov}/lcov.info" >>"${viewerCov}/reports"
+            echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
+      - codecov/upload:
+          file: '/home/circleci/repo/platform/viewer/coverage/reports'
+          flags: 'viewer'
+
+      # PLATFORM/CORE
+      - run:
+          name: 'CORE: Combine report output'
+          command: |
+            coreCov="/home/circleci/repo/platform/core/coverage"
+            touch "${coreCov}/reports"
+            cat "${coreCov}/clover.xml" >> "${coreCov}/reports"
+            echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
+            cat "${coreCov}/lcov.info" >> "${coreCov}/reports"
+            echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
+      - codecov/upload:
+          file: '/home/circleci/repo/platform/core/coverage/reports'
+          flags: 'core'
+
+  UNIT_TESTS_PERSIST_WORKSPACE:
     <<: *defaults
     steps:
-      - attach_workspace:
-          at: ~/repo
+      # Update yarn
+      #- run: rm -rf ~/.yarn && npm i -g yarn && yarn -v
+
+      # Enable yarn workspaces
+      - run: yarn config set workspaces-experimental true
+
+      # Checkout code and ALL Git Tags
+      - checkout:
+          post:
+            - git fetch --all
+
+      - restore_cache:
+          name: Restore Yarn and Cypress Package Cache
+          keys:
+            # when lock file changes, use increasingly general patterns to restore cache
+            - yarn-packages-{{ checksum "yarn.lock" }}
+            - yarn-packages-
+
+      - run:
+          name: Install Dependencies
+          command: yarn install --frozen-lockfile
+
+      - save_cache:
+          name: Save Yarn Package Cache
+          paths:
+            - ~/.cache ## Cache yarn and Cypress
+          key: yarn-packages-{{ checksum "yarn.lock" }}
 
       # RUN TESTS
       - run:
@@ -92,7 +153,7 @@ jobs:
           flags: 'core'
 
       # Persist :+1:
-      - persist_to_workspace:
+      - persist_to_workspace: &persist_to_workspace
           root: ~/repo
           paths: .
 
@@ -137,25 +198,25 @@ jobs:
       - run: chmod +x ~/repo/.circleci/build-and-publish-docs.sh
       - run: ~/repo/.circleci/build-and-publish-docs.sh
 
-  DOCKER_PUBLISH:
+  DOCKER_MASTER_PUBLISH:
     <<: *defaults
     steps:
       - attach_workspace:
           at: ~/repo
       - setup_remote_docker:
-          docker_layer_caching: true
+          docker_layer_caching: false
       - run:
           name: Build and push Docker image
           command: |
             # This file will exist if a new version was published by
             # our `semantic-release` command in the previous job
-            if [[ ! -e tmp/updated-version.txt ]]; then
+            if [[ ! -e platform/viewer/success_version.txt ]]; then
               exit 0
             else
               # Remove npm config
               rm -f ./.npmrc
               # Set our version number using vars
-              export IMAGE_VERSION=$(cat tmp/updated-version.txt)
+              export IMAGE_VERSION=$(cat platform/viewer/success_version.txt)
               export IMAGE_VERSION_FULL=v$IMAGE_VERSION.${CIRCLE_BUILD_NUM}
               echo $IMAGE_VERSION
               echo $IMAGE_VERSION_FULL
@@ -166,6 +227,43 @@ jobs:
               docker push ohif/$IMAGE_NAME:latest
             fi
 
+  DOCKER_PR_PUBLISH:
+    <<: *defaults
+    steps:
+      # Enable yarn workspaces
+      - run: yarn config set workspaces-experimental true
+
+      # Checkout code and ALL Git Tags
+      - checkout:
+          post:
+            - git fetch --all
+
+      - restore_cache:
+          name: Restore Yarn and Cypress Package Cache
+          keys:
+            # when lock file changes, use increasingly general patterns to restore cache
+            - yarn-packages-{{ checksum "yarn.lock" }}
+            - yarn-packages-
+
+      - run:
+          name: Install Dependencies
+          command: yarn install --frozen-lockfile
+
+      - setup_remote_docker:
+          docker_layer_caching: false
+
+      - run:
+          name: Build and push Docker image
+          command: |
+            # Remove npm config
+            rm -f ./.npmrc
+            # Set our version number using vars
+            echo $CIRCLE_BUILD_NUM
+            # Build our image, auth, and push
+            docker build --tag ohif/viewer:PR_BUILD-$CIRCLE_BUILD_NUM .
+            echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
+            docker push ohif/viewer:PR_BUILD-$CIRCLE_BUILD_NUM
+
   VIEWER_DEMO_BUILD:
     <<: *defaults
     steps:
@@ -175,7 +273,7 @@ jobs:
       - run:
           name: 'Build Demo Site'
           command: yarn run build:demo
-          no_output_timeout: 30m
+          no_output_timeout: 45m
       - run:
           name: 'Upload SourceMaps, Send Deploy Notification'
           command: |
@@ -199,7 +297,7 @@ jobs:
       - attach_workspace:
           at: ~/repo
       - setup_remote_docker:
-          docker_layer_caching: true
+          docker_layer_caching: false
       - run:
           name: Deploy latest version to viewer.ohif.org
           command: |
@@ -217,29 +315,29 @@ workflows:
   # PULL REQUESTS
   PR_CHECKS:
     jobs:
-      - CHECKOUT:
+      - UNIT_TESTS:
           filters:
             branches:
               ignore:
                 - master
                 - feature/*
                 - hotfix/*
-      - UNIT_TESTS:
-          requires:
-            - CHECKOUT
       # E2E: PWA
       - cypress/run:
           name: 'E2E: PWA'
+          executor: cypress/browsers-chrome76
+          browser: chrome
           pre-steps:
             - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
                 add wait-on' # Use yarn latest
           yarn: true
+          record: false
           store_artifacts: false
           working_directory: platform/viewer
-          build: yarn run build:e2e
-          start: yarn run test:e2e:dist
+          build: npx cross-env QUICK_BUILD=true yarn run build
+          start: yarn run test:e2e:serve
           wait-on: 'http://localhost:3000'
-          cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
+          cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
           no-workspace: true # Don't persist workspace
           post-steps:
             - store_artifacts:
@@ -249,16 +347,20 @@ workflows:
       # E2E: script-tag
       - cypress/run:
           name: 'E2E: Script Tag'
+          executor: cypress/browsers-chrome76
+          browser: chrome
           pre-steps:
             - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
                 add wait-on' # Use yarn latest
           yarn: true
+          record: false
           store_artifacts: false
           working_directory: platform/viewer
-          build: yarn run build:package
-          start: yarn run test:e2e:dist
+          build: npx cross-env QUICK_BUILD=true yarn run build:package
+          start: yarn run test:e2e:serve
+          spec: 'cypress/integration/common/**/*'
           wait-on: 'http://localhost:3000'
-          cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
+          cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
           no-workspace: true # Don't persist workspace
           post-steps:
             - store_artifacts:
@@ -266,30 +368,41 @@ workflows:
           requires:
             - UNIT_TESTS
 
+  PR_OPTIONAL_DOCKER_PUBLISH:
+    jobs:
+      # https://circleci.com/docs/2.0/workflows/#holding-a-workflow-for-a-manual-approval
+      - AWAIT_APPROVAL:
+          type: approval
+      # Update hub.docker.org
+      - DOCKER_PR_PUBLISH:
+          context: Docker Hub
+          requires:
+            - AWAIT_APPROVAL
+
   # MERGE TO MASTER
   RELEASE:
     jobs:
-      - CHECKOUT:
+      - UNIT_TESTS_PERSIST_WORKSPACE:
           filters:
             branches:
               only: master
-      - UNIT_TESTS:
-          requires:
-            - CHECKOUT
       # E2E: PWA + Persist
       - cypress/run:
           name: 'E2E: PWA'
+          executor: cypress/browsers-chrome76
+          browser: chrome
           pre-steps:
             - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
                 add wait-on' # Use yarn latest
           yarn: true
-          record: true
+          record: false
           store_artifacts: true
           working_directory: platform/viewer
-          build: yarn run build:e2e
-          start: yarn run test:e2e:dist
+          build: npx cross-env QUICK_BUILD=true yarn run build
+          start: yarn run test:e2e:serve
           wait-on: 'http://localhost:3000'
-          cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
+          command: 'yarn run test:e2e:ci'
+          cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
           no-workspace: true # Don't persist workspace
           post-steps:
             - store_artifacts:
@@ -297,20 +410,24 @@ workflows:
             - store_test_results:
                 path: cypress/results
           requires:
-            - UNIT_TESTS
+            - UNIT_TESTS_PERSIST_WORKSPACE
       # E2E: script-tag
       - cypress/run:
           name: 'E2E: Script Tag'
+          executor: cypress/browsers-chrome76
+          browser: chrome
           pre-steps:
             - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
                 add wait-on' # Use yarn latest
           yarn: true
+          record: false
           store_artifacts: false
           working_directory: platform/viewer
-          build: yarn run build:package
-          start: yarn run test:e2e:dist
+          build: npx cross-env QUICK_BUILD=true yarn run build:package
+          start: yarn run test:e2e:serve
+          spec: 'cypress/integration/common/**/*'
           wait-on: 'http://localhost:3000'
-          cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
+          cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
           no-workspace: true # Don't persist workspace
           post-steps:
             - store_artifacts:
@@ -318,12 +435,13 @@ workflows:
             - store_test_results:
                 path: cypress/results
           requires:
-            - UNIT_TESTS
+            - UNIT_TESTS_PERSIST_WORKSPACE
       # Update NPM
       - NPM_PUBLISH:
           requires:
             - 'E2E: Script Tag'
             - 'E2E: PWA'
+      # Update docs.ohif.org
       - DOCS_PUBLISH:
           requires:
             - 'E2E: Script Tag'
@@ -332,12 +450,11 @@ workflows:
           requires:
             - 'E2E: Script Tag'
             - 'E2E: PWA'
+      # Update viewer.ohif.org
       - VIEWER_DEMO_PUBLISH:
           requires:
             - VIEWER_DEMO_BUILD
       # Update hub.docker.org
-      # - DOCKER_PUBLISH:
-      #     requires:
-      #       - NPM_PUBLISH
-      # Update viewer.ohif.org
-      # Update docs.ohif.org
+      - DOCKER_MASTER_PUBLISH:
+          requires:
+            - NPM_PUBLISH

.codecov.yml

@@ -8,11 +8,13 @@ coverage:
   status:
     project:
       default:
-        threshold: 0.10%
+        threshold: 0.5%
       core:
         flags: core
+        threshold: 0.5%
       viewer:
         flags: viewer
+        threshold: 0.5%
     patch: off
 flags:
   core:

.docker/Viewer-v2.x/default.conf

@@ -0,0 +1,12 @@
+server {
+  listen 80;
+  location / {
+    root   /usr/share/nginx/html;
+    index  index.html index.htm;
+    try_files $uri $uri/ /index.html;
+  }
+  error_page   500 502 503 504  /50x.html;
+  location = /50x.html {
+    root   /usr/share/nginx/html;
+  }
+}

.docker/Viewer-v2.x/entrypoint.sh

@@ -0,0 +1,19 @@
+#!/bin/bash
+
+# If CLIENT_ID is specified, use the google.js configuration with the modified ID
+if [ ! -z "$CLIENT_ID" ]
+  then
+  	echo "Google Cloud Healthcare $CLIENT_ID has been provided: "
+  	echo $CLIENT_ID
+  	echo "Updating config..."
+
+  	# - Use SED to replace the CLIENT_ID that is currently in google.js
+	sed -i -e "s/YOURCLIENTID.apps.googleusercontent.com/$CLIENT_ID/g" /usr/share/nginx/html/google.js
+
+	# - Copy google.js to overwrite app-config.js
+	cp /usr/share/nginx/html/google.js /usr/share/nginx/html/app-config.js
+fi
+
+echo "Starting Nginx to serve the OHIF Viewer..."
+
+exec "$@"

.dockerignore

@@ -0,0 +1,30 @@
+# Reduces size of context and hides
+# files from Docker (can't COPY or ADD these)
+
+# Output
+dist/
+build/
+
+# Dependencies
+node_modules/
+
+# Root
+README.md
+Dockerfile
+dockerfile
+
+# Misc. Config
+.git
+.DS_Store
+.gitignore
+.vscode
+.circleci
+
+# Unnecessary things to pull into container
+.circleci/
+.github/
+.netlify/
+.scripts/
+.vscode/
+coverage/
+docs/

.env.example

@@ -0,0 +1 @@
+PERCY_TOKEN=<your token here>

.eslintrc.json

@@ -16,6 +16,7 @@
   },
   "globals": {
     "cy": true,
+    "before": true,
     "context": true,
     "Cypress": true,
     "assert": true

.github/PULL_REQUEST_TEMPLATE/pull_request_template.md

@@ -0,0 +1,29 @@
+### Request Checklist
+
+- [] Brief description of changes
+- [] Links to any relevant issues
+- [] Required status checks are passing
+- [] `@mention` a maintainer to request a review
+
+#### Special
+
+> If this PR is not on a branch for this repo, it is "untrusted" and does not
+> have access to env vars. Reviewers can kick off a trusted docker deploy by:
+>
+> 1. Verifying there are no malicious changes to CI build
+> 2. Using the [git-push-fork-to-upstream-branch][script] script
+> 3. Executing the manual approval step in the CI workflow
+
+- [] Request docker publish of PR
+
+_Want to improve this process? Consider PR'ing the ability for reviewers to add
+a label to trigger this process._
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[blog]: https://circleci.com/blog/triggering-trusted-ci-jobs-on-untrusted-forks/
+[script]: https://github.com/jklukas/git-push-fork-to-upstream-branch
+<!-- prettier-ignore-end -->

.gitignore

@@ -21,6 +21,7 @@ npm-debug.log
 package-lock.json
 yarn-error.log
 .DS_Store
+.env
 
 # Common Example Data Directories
 sampledata/

.vscode/settings.json

@@ -1,10 +1,8 @@
 {
   "editor.rulers": [80, 120],
-
   // ===
   // Spacing
   // ===
-
   "editor.insertSpaces": true,
   "editor.tabSize": 2,
   "editor.trimAutoWhitespace": true,
@@ -12,19 +10,23 @@
   "files.eol": "\n",
   "files.insertFinalNewline": true,
   "files.trimFinalNewlines": true,
-
   // ===
   // Event Triggers
   // ===
-
   "editor.formatOnSave": true,
   "eslint.autoFixOnSave": true,
   "eslint.run": "onSave",
   "eslint.validate": [
-    { "language": "javascript", "autoFix": true },
-    { "language": "javascriptreact", "autoFix": true }
+    {
+      "language": "javascript",
+      "autoFix": true
+    },
+    {
+      "language": "javascriptreact",
+      "autoFix": true
+    }
   ],
-  "prettier.disableLanguages": [],
+  "prettier.disableLanguages": ["html"],
   "prettier.endOfLine": "lf",
   "workbench.colorCustomizations": {}
 }

.webpack/webpack.base.js

@@ -1,23 +1,54 @@
+// ~~ ENV
+const dotenv = require('dotenv');
+//
 const path = require('path');
 const webpack = require('webpack');
+const PACKAGE = require('../platform/viewer/package.json');
+// ~~ RULES
 const loadShadersRule = require('./rules/loadShaders.js');
 const loadWebWorkersRule = require('./rules/loadWebWorkers.js');
 const transpileJavaScriptRule = require('./rules/transpileJavaScript.js');
+// ~~ PLUGINS
+const TerserJSPlugin = require('terser-webpack-plugin');
+// ~~ ENV VARS
+const NODE_ENV = process.env.NODE_ENV;
+const QUICK_BUILD = process.env.QUICK_BUILD;
+const BUILD_NUM = process.env.CIRCLE_BUILD_NUM || '0';
+
+//
+dotenv.config();
 
 module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
   if (!process.env.NODE_ENV) {
     throw new Error('process.env.NODE_ENV not set');
   }
 
-  const mode =
-    process.env.NODE_ENV === 'production' ? 'production' : 'development';
+  const mode = NODE_ENV === 'production' ? 'production' : 'development';
+  const isProdBuild = NODE_ENV === 'production';
+  const isQuickBuild = QUICK_BUILD === 'true';
 
-  return {
-    mode,
+  const config = {
+    mode: isProdBuild ? 'production' : 'development',
+    devtool: isProdBuild ? 'source-map' : 'cheap-module-eval-source-map',
     entry: {
       app: `${SRC_DIR}/index.js`,
     },
+    optimization: {
+      minimize: isProdBuild,
+      sideEffects: true,
+    },
     context: SRC_DIR,
+    stats: {
+      colors: true,
+      hash: true,
+      timings: true,
+      assets: true,
+      chunks: false,
+      chunkModules: false,
+      modules: false,
+      children: false,
+      warnings: true,
+    },
     module: {
       rules: [
         transpileJavaScriptRule(mode),
@@ -45,6 +76,8 @@ module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
         'process.env.DEBUG': JSON.stringify(process.env.DEBUG),
         'process.env.APP_CONFIG': JSON.stringify(process.env.APP_CONFIG || ''),
         'process.env.PUBLIC_URL': JSON.stringify(process.env.PUBLIC_URL || '/'),
+        'process.env.VERSION_NUMBER': JSON.stringify(PACKAGE.version || ''),
+        'process.env.BUILD_NUM': JSON.stringify(BUILD_NUM),
       }),
     ],
     // Fix: https://github.com/webpack-contrib/css-loader/issues/447#issuecomment-285598881
@@ -53,4 +86,23 @@ module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
       fs: 'empty',
     },
   };
+
+  if (isProdBuild) {
+    config.optimization.minimizer = [
+      new TerserJSPlugin({
+        // Supports:
+        // source-map and inline-source-map
+        sourceMap: isProdBuild && !isQuickBuild,
+        parallel: true,
+        terserOptions: {},
+      }),
+    ];
+  }
+
+  if (isQuickBuild) {
+    config.optimization.minimize = false;
+    config.devtool = false;
+  }
+
+  return config;
 };

Dockerfile

@@ -0,0 +1,65 @@
+# This dockerfile is used to publish the `ohif/viewer` image on dockerhub.
+#
+# It's a good example of how to build our static application and package it
+# with a web server capable of hosting it as static content.
+#
+# docker build
+# --------------
+# If you would like to use this dockerfile to build and tag an image, make sure
+# you set the context to the project's root directory:
+# https://docs.docker.com/engine/reference/commandline/build/
+#
+#
+# SUMMARY
+# --------------
+# This dockerfile has two stages:
+#
+# 1. Building the React application for production
+# 2. Setting up our Nginx (Alpine Linux) image w/ step one's output
+#
+
+
+# Stage 1: Build the application
+# docker build -t ohif/viewer:latest .
+FROM node:10.16.3-slim as builder
+
+RUN mkdir /usr/src/app
+WORKDIR /usr/src/app
+
+# Copy Files
+COPY .docker /usr/src/app/.docker
+COPY .webpack /usr/src/app/.webpack
+COPY extensions /usr/src/app/extensions
+COPY platform /usr/src/app/platform
+COPY .browserslistrc /usr/src/app/.browserslistrc
+COPY aliases.config.js /usr/src/app/aliases.config.js
+COPY babel.config.js /usr/src/app/babel.config.js
+COPY lerna.json /usr/src/app/lerna.json
+COPY package.json /usr/src/app/package.json
+COPY postcss.config.js /usr/src/app/postcss.config.js
+COPY yarn.lock /usr/src/app/yarn.lock
+
+# Run the install before copying the rest of the files
+RUN yarn config set workspaces-experimental true
+RUN yarn install
+
+ENV PATH /usr/src/app/node_modules/.bin:$PATH
+ENV QUICK_BUILD true
+# ENV GENERATE_SOURCEMAP=false
+# ENV REACT_APP_CONFIG=config/default.js
+
+RUN yarn run build
+
+# Stage 2: Bundle the built application into a Docker container
+# which runs Nginx using Alpine Linux
+FROM nginx:1.15.5-alpine
+RUN apk add --no-cache bash
+RUN rm -rf /etc/nginx/conf.d
+COPY .docker/Viewer-v2.x /etc/nginx/conf.d
+COPY .docker/Viewer-v2.x/entrypoint.sh /usr/src/
+RUN chmod 777 /usr/src/entrypoint.sh
+COPY --from=builder /usr/src/app/platform/viewer/dist /usr/share/nginx/html
+EXPOSE 80
+EXPOSE 443
+ENTRYPOINT ["/usr/src/entrypoint.sh"]
+CMD ["nginx", "-g", "daemon off;"]

README.md

@@ -26,6 +26,7 @@
 [![Netlify Status][netlify-image]][netlify-url]
 [![CircleCI][circleci-image]][circleci-url]
 [![codecov][codecov-image]][codecov-url]
+[![This project is using Percy.io for visual regression testing.][percy-image]](percy-url)
 [![All Contributors](https://img.shields.io/badge/all_contributors-10-orange.svg?style=flat-square)](#contributors)
 <!-- prettier-ignore-end -->
 
@@ -132,7 +133,7 @@ deployment recipe.
 ### Requirements
 
 - [Yarn 1.17.3+](https://yarnpkg.com/en/docs/install)
-- [Node 8+](https://nodejs.org/en/)
+- [Node 10+](https://nodejs.org/en/)
 - Yarn Workspaces should be enabled on your machine:
   - `yarn config set workspaces-experimental true`
 
@@ -288,6 +289,8 @@ MIT © [OHIF](https://github.com/OHIF)
 [docker-image-url]: https://hub.docker.com/r/ohif/viewer
 [license-image]: https://img.shields.io/badge/license-MIT-blue.svg?style=flat-square
 [license-url]: LICENSE
+[percy-image]: https://percy.io/static/images/percy-badge.svg
+[percy-url]: https://percy.io/Open-Health-Imaging-Foundation/OHIF-Viewer
 <!-- Links -->
 [monorepo]: https://en.wikipedia.org/wiki/Monorepo
 [how-to-fork]: https://help.github.com/en/articles/fork-a-repo

docs/latest/advanced/extensions.md

@@ -140,8 +140,8 @@ children: PropTypes.node,
 customProps: PropTypes.object
 ```
 
-Viewport components are managed by the `LayoutManager`. Which Viewport component
-is used depends on:
+Viewport components are managed by the `ViewportGrid` Component. Which Viewport
+component is used depends on:
 
 - The Layout Configuration
 - Registered SopClassHandlers
@@ -159,7 +159,8 @@ For a complete example implementation,
 An extension can register a Toolbar Module by providing a `getToolbarModule()`
 method that returns a React Component. The component does not receive any props.
 If you want to modify or react to state, you will need to connect to the redux
-store.
+store. The given toolbar must determine its set of elements and the context of
+them. The set of elements will be listed on toolbar `definitions`.
 
 ![Toolbar Extension](../assets/img/extensions-toolbar.gif)
 
@@ -170,6 +171,38 @@ Toolbar components are rendered in the `ToolbarRow` component.
 For a complete example implementation,
 [check out the OHIFCornerstoneViewport's Toolbar Module](https://github.com/OHIF/Viewers/blob/master/extensions/cornerstone/src/toolbarModule.js).
 
+##### Toolbar Custom Component
+
+Toolbar elements can define its own custom react component to be consumed when
+rendering it. So far, it accepts `Functional` and `Class` Components. For that,
+you just need to expose your `CustomToolbarComponent` as the value of key
+`CustomComponent`. In case the property `CustomComponent` is not present, a
+default toolbar component will be used to render it. See bellow
+
+```js
+definitions: [
+...
+    {
+        id: 'Custom',
+        label: 'Custom',
+        icon: 'custom-icon',
+        CustomComponent: CustomToolbarComponent,
+    }
+...
+]
+
+```
+
+`CustomComponent` components will receive the following props:
+
+- parentContext: parent context. (In most of the cases it will be a ToolbarRow
+  instance)
+- toolbarClickCallback: callback method when clicking on toolbar
+- button: its own definition object
+- key: react key prop
+- activeButtons: list of active elements
+- isActive: if current
+
 #### SopClassHandler
 
 ...

docs/latest/deployment/recipes/build-for-production.md

@@ -48,7 +48,7 @@ If everything worked as expected, you should have a new `dist/` directory in the
 project's folder. It should roughly resemble the following:
 
 ```bash
-dist/
+<root>platform/viewer/dist/
 ├── app-config.js
 ├── app.bundle.js
 ├── app.css

extensions/cornerstone/.webpack/webpack.prod.js

@@ -1,3 +1,4 @@
+const webpack = require('webpack');
 const merge = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
@@ -34,5 +35,10 @@ module.exports = (env, argv) => {
       libraryExport: 'default',
       filename: pkg.main,
     },
+    plugins: [
+      new webpack.optimize.LimitChunkCountPlugin({
+        maxChunks: 1,
+      }),
+    ],
   });
 };

extensions/cornerstone/CHANGELOG.md

@@ -3,6 +3,94 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [1.4.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.3.1...@ohif/extension-cornerstone@1.4.0) (2019-10-26)
+
+
+### Features
+
+* Snapshot Download Tool ([#840](https://github.com/OHIF/Viewers/issues/840)) ([450e098](https://github.com/OHIF/Viewers/commit/450e0981a5ba054fcfcb85eeaeb18371af9088f8))
+
+
+
+
+
+## [1.3.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.3.0...@ohif/extension-cornerstone@1.3.1) (2019-10-09)
+
+
+### Bug Fixes
+
+* 🐛 set tools bidirectional, eraser and annotate command ([#1020](https://github.com/OHIF/Viewers/issues/1020)) ([a28984e](https://github.com/OHIF/Viewers/commit/a28984e))
+
+
+
+
+
+# [1.3.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.2.5...@ohif/extension-cornerstone@1.3.0) (2019-10-09)
+
+
+### Features
+
+* Multiple fixes and implementation changes to react-cornerstone-viewport ([1cc94f3](https://github.com/OHIF/Viewers/commit/1cc94f3))
+
+
+
+
+
+## [1.2.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.2.4...@ohif/extension-cornerstone@1.2.5) (2019-09-27)
+
+
+### Bug Fixes
+
+* version bump issue ([#963](https://github.com/OHIF/Viewers/issues/963)) ([e607ed2](https://github.com/OHIF/Viewers/commit/e607ed2)), closes [#962](https://github.com/OHIF/Viewers/issues/962)
+
+
+
+
+
+# [2.0.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.2.2...@ohif/extension-cornerstone@2.0.0) (2019-09-27)
+
+
+### Bug Fixes
+
+* 🐛 Add DicomLoaderService & FileLoaderService to fix SR, PDF, and SEG support in local file and WADO-RS-only use cases ([#862](https://github.com/OHIF/Viewers/issues/862)) ([e7e1a8a](https://github.com/OHIF/Viewers/commit/e7e1a8a)), closes [#838](https://github.com/OHIF/Viewers/issues/838)
+* version bump issue ([#962](https://github.com/OHIF/Viewers/issues/962)) ([c80ea17](https://github.com/OHIF/Viewers/commit/c80ea17))
+
+
+### BREAKING CHANGES
+
+* DICOM Seg
+
+
+
+
+
+# [2.0.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.2.2...@ohif/extension-cornerstone@2.0.0) (2019-09-27)
+
+
+### Bug Fixes
+
+* 🐛 Add DicomLoaderService & FileLoaderService to fix SR, PDF, and SEG support in local file and WADO-RS-only use cases ([#862](https://github.com/OHIF/Viewers/issues/862)) ([e7e1a8a](https://github.com/OHIF/Viewers/commit/e7e1a8a)), closes [#838](https://github.com/OHIF/Viewers/issues/838)
+
+
+### BREAKING CHANGES
+
+* DICOM Seg
+
+
+
+
+
+## [1.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.2.1...@ohif/extension-cornerstone@1.2.2) (2019-09-26)
+
+
+### Bug Fixes
+
+* Add some code splitting for PWA build ([#937](https://github.com/OHIF/Viewers/issues/937)) ([8938035](https://github.com/OHIF/Viewers/commit/8938035))
+
+
+
+
+
 ## [1.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.2.0...@ohif/extension-cornerstone@1.2.1) (2019-09-17)
 
 

extensions/cornerstone/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-cornerstone",
-  "version": "1.2.1",
+  "version": "1.4.0",
   "description": "OHIF extension for Cornerstone",
   "author": "OHIF",
   "license": "MIT",
@@ -48,6 +48,6 @@
     "@babel/runtime": "^7.5.5",
     "classnames": "^2.2.6",
     "lodash.throttle": "^4.1.1",
-    "react-cornerstone-viewport": "0.1.30"
+    "react-cornerstone-viewport": "2.x.x"
   }
 }

extensions/cornerstone/src/ConnectedCornerstoneViewport.js

@@ -23,36 +23,40 @@ const MEASUREMENT_ACTION_MAP = {
 const mapStateToProps = (state, ownProps) => {
   let dataFromStore;
 
+  // TODO: This may not be updated anymore :thinking:
   if (state.extensions && state.extensions.cornerstone) {
     dataFromStore = state.extensions.cornerstone;
   }
 
-  // TODO: This should be extension configuration
-  // ...dataFromStore -->
-  // availableTools,
-  // onNewImage,
-  // onRightClick,
-  // onTouchPress,
-  // onTouchStart,
-  // onMouseClick,
-
   // If this is the active viewport, enable prefetching.
   const { viewportIndex } = ownProps; //.viewportData;
   const isActive = viewportIndex === state.viewports.activeViewportIndex;
   const viewportSpecificData =
     state.viewports.viewportSpecificData[viewportIndex] || {};
 
+  // CINE
+  let isPlaying = false;
+  let frameRate = 24;
+
+  if (viewportSpecificData && viewportSpecificData.cine) {
+    const cine = viewportSpecificData.cine;
+
+    isPlaying = cine.isPlaying === true;
+    frameRate = cine.cineFrameRate || frameRate;
+  }
+
   return {
-    layout: state.viewports.layout,
+    // layout: state.viewports.layout,
     isActive,
     // TODO: Need a cleaner and more versatile way.
     // Currently justing using escape hatch + commands
     // activeTool: activeButton && activeButton.command,
     ...dataFromStore,
-    enableStackPrefetch: isActive,
+    isStackPrefetchEnabled: isActive,
+    isPlaying,
+    frameRate,
     //stack: viewportSpecificData.stack,
-    cineToolData: viewportSpecificData.cine,
-    viewport: viewportSpecificData.viewport,
+    // viewport: viewportSpecificData.viewport,
   };
 };
 

extensions/cornerstone/src/OHIFCornerstoneViewport.js

@@ -1,10 +1,10 @@
-import React, { Component } from "react";
+import React, { Component } from 'react';
 
-import ConnectedCornerstoneViewport from "./ConnectedCornerstoneViewport";
-import OHIF from "@ohif/core";
-import PropTypes from "prop-types";
-import cornerstone from "cornerstone-core";
-import handleSegmentationStorage from "./handleSegmentationStorage.js";
+import ConnectedCornerstoneViewport from './ConnectedCornerstoneViewport';
+import OHIF from '@ohif/core';
+import PropTypes from 'prop-types';
+import cornerstone from 'cornerstone-core';
+import handleSegmentationStorage from './handleSegmentationStorage.js';
 
 const { StackManager } = OHIF.utils;
 
@@ -18,7 +18,7 @@ cornerstone.metaData.addProvider(
 StackManager.setMetadataProvider(metadataProvider);
 
 const SOP_CLASSES = {
-  SEGMENTATION_STORAGE: "1.2.840.10008.5.1.4.1.1.66.4"
+  SEGMENTATION_STORAGE: '1.2.840.10008.5.1.4.1.1.66.4',
 };
 
 const specialCaseHandlers = {};
@@ -28,11 +28,11 @@ specialCaseHandlers[
 
 class OHIFCornerstoneViewport extends Component {
   state = {
-    viewportData: null
+    viewportData: null,
   };
 
   static defaultProps = {
-    customProps: {}
+    customProps: {},
   };
 
   static propTypes = {
@@ -40,17 +40,17 @@ class OHIFCornerstoneViewport extends Component {
     displaySet: PropTypes.object,
     viewportIndex: PropTypes.number,
     children: PropTypes.node,
-    customProps: PropTypes.object
+    customProps: PropTypes.object,
   };
 
-  static id = "OHIFCornerstoneViewport";
+  static id = 'OHIFCornerstoneViewport';
 
   static init() {
-    console.log("OHIFCornerstoneViewport init()");
+    console.log('OHIFCornerstoneViewport init()');
   }
 
   static destroy() {
-    console.log("OHIFCornerstoneViewport destroy()");
+    console.log('OHIFCornerstoneViewport destroy()');
     StackManager.clearStacks();
   }
 
@@ -72,15 +72,15 @@ class OHIFCornerstoneViewport extends Component {
     frameIndex = 0
   ) {
     if (!studies || !studies.length) {
-      throw new Error("Studies not provided.");
+      throw new Error('Studies not provided.');
     }
 
     if (!studyInstanceUid) {
-      throw new Error("StudyInstanceUID not provided.");
+      throw new Error('StudyInstanceUID not provided.');
     }
 
     if (!displaySetInstanceUid) {
-      throw new Error("StudyInstanceUID not provided.");
+      throw new Error('StudyInstanceUID not provided.');
     }
 
     // Create shortcut to displaySet
@@ -89,7 +89,7 @@ class OHIFCornerstoneViewport extends Component {
     );
 
     if (!study) {
-      throw new Error("Study not found.");
+      throw new Error('Study not found.');
     }
 
     const displaySet = study.displaySets.find(set => {
@@ -97,7 +97,7 @@ class OHIFCornerstoneViewport extends Component {
     });
 
     if (!displaySet) {
-      throw new Error("Display Set not found.");
+      throw new Error('Display Set not found.');
     }
 
     // Get stack from Stack Manager
@@ -110,7 +110,7 @@ class OHIFCornerstoneViewport extends Component {
     if (sopInstanceUid) {
       const index = stack.imageIds.findIndex(imageId => {
         const sopCommonModule = cornerstone.metaData.get(
-          "sopCommonModule",
+          'sopCommonModule',
           imageId
         );
         if (!sopCommonModule) {
@@ -124,7 +124,7 @@ class OHIFCornerstoneViewport extends Component {
         stack.currentImageIdIndex = index;
       } else {
         console.warn(
-          "SOPInstanceUID provided was not found in specified DisplaySet"
+          'SOPInstanceUID provided was not found in specified DisplaySet'
         );
       }
     }
@@ -132,22 +132,6 @@ class OHIFCornerstoneViewport extends Component {
     return stack;
   }
 
-  static getViewportData = (
-    studies,
-    studyInstanceUid,
-    displaySetInstanceUid,
-    sopInstanceUid,
-    frameIndex
-  ) => {
-    return OHIFCornerstoneViewport.getCornerstoneStack(
-      studies,
-      studyInstanceUid,
-      displaySetInstanceUid,
-      sopInstanceUid,
-      frameIndex
-    );
-  };
-
   getViewportData = async (
     studies,
     studyInstanceUid,
@@ -172,7 +156,7 @@ class OHIFCornerstoneViewport extends Component {
         );
         break;
       default:
-        const stack = OHIFCornerstoneViewport.getViewportData(
+        const stack = OHIFCornerstoneViewport.getCornerstoneStack(
           studies,
           studyInstanceUid,
           displaySetInstanceUid,
@@ -183,7 +167,7 @@ class OHIFCornerstoneViewport extends Component {
         viewportData = {
           studyInstanceUid,
           displaySetInstanceUid,
-          stack
+          stack,
         };
 
         break;
@@ -199,7 +183,7 @@ class OHIFCornerstoneViewport extends Component {
       displaySetInstanceUid,
       sopClassUids,
       sopInstanceUid,
-      frameIndex
+      frameIndex,
     } = displaySet;
 
     if (!studyInstanceUid || !displaySetInstanceUid) {
@@ -208,7 +192,7 @@ class OHIFCornerstoneViewport extends Component {
 
     if (sopClassUids && sopClassUids.length > 1) {
       console.warn(
-        "More than one SOPClassUid in the same series is not yet supported."
+        'More than one SOPClassUid in the same series is not yet supported.'
       );
     }
 
@@ -223,7 +207,7 @@ class OHIFCornerstoneViewport extends Component {
       frameIndex
     ).then(viewportData => {
       this.setState({
-        viewportData
+        viewportData,
       });
     });
   }
@@ -249,25 +233,42 @@ class OHIFCornerstoneViewport extends Component {
   render() {
     let childrenWithProps = null;
 
+    if (!this.state.viewportData) {
+      return null;
+    }
+    const { viewportIndex } = this.props;
+    const {
+      imageIds,
+      currentImageIdIndex,
+      // If this comes from the instance, would be a better default
+      // `FrameTime` in the instance
+      // frameRate = 0,
+    } = this.state.viewportData.stack;
+
     // TODO: Does it make more sense to use Context?
     if (this.props.children && this.props.children.length) {
       childrenWithProps = this.props.children.map((child, index) => {
         return React.cloneElement(child, {
           viewportIndex: this.props.viewportIndex,
-          key: index
+          key: index,
         });
       });
     }
 
     return (
       <>
-        {this.state.viewportData && (
-          <ConnectedCornerstoneViewport
-            viewportData={this.state.viewportData}
-            viewportIndex={this.props.viewportIndex}
-            {...this.props.customProps}
-          />
-        )}
+        <ConnectedCornerstoneViewport
+          viewportIndex={viewportIndex}
+          imageIds={imageIds}
+          imageIdIndex={currentImageIdIndex}
+          // ~~ Connected (From REDUX)
+          // frameRate={frameRate}
+          // isPlaying={false}
+          // isStackPrefetchEnabled={true}
+          // onElementEnabled={() => {}}
+          // setViewportActive{() => {}}
+          {...this.props.customProps}
+        />
         {childrenWithProps}
       </>
     );

extensions/cornerstone/src/asyncComponent.js

@@ -0,0 +1,37 @@
+/**
+ * We use this component to leverage "Code Splitting"
+ *
+ * Link: https://serverless-stack.com/chapters/code-splitting-in-create-react-app.html
+ */
+
+import React, { Component } from 'react';
+
+export default function asyncComponent(importComponent) {
+  class AsyncComponent extends Component {
+    constructor(props) {
+      super(props);
+
+      this.state = {
+        component: null,
+      };
+    }
+
+    async componentDidMount() {
+      // Add dynamically loaded component to state
+      const { default: component } = await importComponent();
+
+      this.setState({
+        component: component,
+      });
+    }
+
+    render() {
+      const C = this.state.component;
+
+      // Render the loaded component, or null
+      return C ? <C {...this.props} /> : null;
+    }
+  }
+
+  return AsyncComponent;
+}

extensions/cornerstone/src/handleSegmentationStorage.js

@@ -4,7 +4,7 @@ import OHIF from '@ohif/core';
 import cornerstone from 'cornerstone-core';
 import cornerstoneTools from 'cornerstone-tools';
 
-const { StackManager } = OHIF.utils;
+const { StackManager, DicomLoaderService } = OHIF.utils;
 
 function getDisplaySet(studies, studyInstanceUid, displaySetInstanceUid) {
   const study = studies.find(
@@ -52,14 +52,6 @@ function addSegMetadataToCornerstoneToolState(
   }
 }
 
-function retrieveDicomData(wadoUri) {
-  // TODO: Authorization header depends on the server. If we ever have multiple servers
-  // we will need to figure out how / when to pass this information in.
-  return fetch(wadoUri, {
-    headers: OHIF.DICOMWeb.getAuthorizationHeader(),
-  }).then(response => response.arrayBuffer());
-}
-
 async function handleSegmentationStorage(
   studies,
   studyInstanceUid,
@@ -73,8 +65,11 @@ async function handleSegmentationStorage(
     studyInstanceUid,
     displaySetInstanceUid
   );
-  const segWadoUri = displaySet.images[0].getData().wadouri;
-  const arrayBuffer = await retrieveDicomData(segWadoUri);
+
+  const arrayBuffer = await DicomLoaderService.findDicomDataPromise(
+    displaySet,
+    studies
+  );
   const dicomData = dcmjs.data.DicomMessage.readFile(arrayBuffer);
   const dataset = dcmjs.data.DicomMetaDictionary.naturalizeDataset(
     dicomData.dict

extensions/cornerstone/src/index.js

@@ -1,7 +1,14 @@
-import OHIFCornerstoneViewport from './OHIFCornerstoneViewport.js';
+import init from './init.js';
+import asyncComponent from './asyncComponent.js';
 import commandsModule from './commandsModule.js';
 import toolbarModule from './toolbarModule.js';
 
+const OHIFCornerstoneViewport = asyncComponent(() =>
+  import(
+    /* webpackChunkName: "OHIFCornerstoneViewport" */ './OHIFCornerstoneViewport.js'
+  )
+);
+
 /**
  *
  */
@@ -11,6 +18,15 @@ export default {
    */
   id: 'cornerstone',
 
+  /**
+   *
+   *
+   * @param {object} [configuration={}]
+   * @param {object|array} [configuration.csToolsConfig] - Passed directly to `initCornerstoneTools`
+   */
+  preRegistration(configuration = {}) {
+    init(configuration);
+  },
   getViewportModule() {
     return OHIFCornerstoneViewport;
   },

extensions/cornerstone/src/init.js

@@ -0,0 +1,87 @@
+import OHIF from '@ohif/core';
+import cornerstone from 'cornerstone-core';
+import csTools from 'cornerstone-tools';
+import initCornerstoneTools from './initCornerstoneTools.js';
+
+/**
+ *
+ * @param {object} configuration
+ * @param {Object|Array} configuration.csToolsConfig
+ */
+export default function init(configuration = {}) {
+  const { csToolsConfig } = configuration;
+  const { StackManager } = OHIF.utils;
+  const metadataProvider = new OHIF.cornerstone.MetadataProvider();
+
+  // ~~ Set our MetadataProvider
+  cornerstone.metaData.addProvider(
+    metadataProvider.provider.bind(metadataProvider)
+  );
+
+  StackManager.setMetadataProvider(metadataProvider);
+
+  // ~~
+  const defaultCsToolsConfig = csToolsConfig || {
+    globalToolSyncEnabled: true,
+    showSVGCursors: true,
+    autoResizeViewports: false,
+  };
+
+  initCornerstoneTools(defaultCsToolsConfig);
+
+  // ~~ Toooools 🙌
+  const {
+    PanTool,
+    ZoomTool,
+    WwwcTool,
+    MagnifyTool,
+    StackScrollTool,
+    StackScrollMouseWheelTool,
+    // Touch
+    PanMultiTouchTool,
+    ZoomTouchPinchTool,
+    // Annotations
+    EraserTool,
+    ArrowAnnotateTool,
+    BidirectionalTool,
+    LengthTool,
+    AngleTool,
+    FreehandRoiTool,
+    EllipticalRoiTool,
+    DragProbeTool,
+    RectangleRoiTool,
+    // Segmentation
+    BrushTool,
+  } = csTools;
+  const tools = [
+    PanTool,
+    ZoomTool,
+    WwwcTool,
+    MagnifyTool,
+    StackScrollTool,
+    StackScrollMouseWheelTool,
+    // Touch
+    PanMultiTouchTool,
+    ZoomTouchPinchTool,
+    // Annotations
+    EraserTool,
+    ArrowAnnotateTool,
+    BidirectionalTool,
+    LengthTool,
+    AngleTool,
+    FreehandRoiTool,
+    EllipticalRoiTool,
+    DragProbeTool,
+    RectangleRoiTool,
+    // Segmentation
+    BrushTool,
+  ];
+
+  tools.forEach(tool => csTools.addTool(tool));
+  csTools.setToolActive('Pan', { mouseButtonMask: 4 });
+  csTools.setToolActive('Zoom', { mouseButtonMask: 2 });
+  csTools.setToolActive('Wwwc', { mouseButtonMask: 1 });
+  csTools.setToolActive('StackScrollMouseWheel', {}); // TODO: Empty options should not be required
+  csTools.setToolActive('PanMultiTouch', { pointers: 2 }); // TODO: Better error if no options
+  csTools.setToolActive('ZoomTouchPinch', {});
+}

extensions/cornerstone/src/toolbarModule.js

@@ -74,7 +74,7 @@ const definitions = [
     label: 'Annotate',
     icon: 'measure-non-target',
     //
-    type: TOOLBAR_BUTTON_TYPES.COMMAND,
+    type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
     commandName: 'setToolActive',
     commandOptions: { toolName: 'ArrowAnnotate' },
   },
@@ -200,7 +200,7 @@ const definitions = [
         label: 'Bidirectional',
         icon: 'measure-target',
         //
-        type: TOOLBAR_BUTTON_TYPES.COMMAND,
+        type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
         commandName: 'setToolActive',
         commandOptions: { toolName: 'Bidirectional' },
       },
@@ -209,10 +209,20 @@ const definitions = [
         label: 'Eraser',
         icon: 'eraser',
         //
-        type: TOOLBAR_BUTTON_TYPES.COMMAND,
+        type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
         commandName: 'setToolActive',
         commandOptions: { toolName: 'Eraser' },
       },
+      {
+        id: 'Download',
+        label: 'Download',
+        icon: 'create-screen-capture',
+        //
+        type: TOOLBAR_BUTTON_TYPES.BUILT_IN,
+        options: {
+          behavior: 'DOWNLOAD_SCREEN_SHOT',
+        },
+      },
     ],
   },
 ];

extensions/dicom-html/.webpack/webpack.prod.js

@@ -1,3 +1,4 @@
+const webpack = require('webpack');
 const merge = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
@@ -34,5 +35,10 @@ module.exports = (env, argv) => {
       libraryExport: 'default',
       filename: pkg.main,
     },
+    plugins: [
+      new webpack.optimize.LimitChunkCountPlugin({
+        maxChunks: 1,
+      }),
+    ],
   });
 };

extensions/dicom-html/CHANGELOG.md

@@ -3,6 +3,44 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.0.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.0.0...@ohif/extension-dicom-html@1.0.1) (2019-10-29)
+
+
+### Bug Fixes
+
+* Set SR viewport as active by interaction ([#1118](https://github.com/OHIF/Viewers/issues/1118)) ([5b33417](https://github.com/OHIF/Viewers/commit/5b334175c370afb930b4b6dbd307ddece8f850e3))
+
+
+
+
+
+# [1.0.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.8...@ohif/extension-dicom-html@1.0.0) (2019-09-27)
+
+
+### Bug Fixes
+
+* 🐛 Add DicomLoaderService & FileLoaderService to fix SR, PDF, and SEG support in local file and WADO-RS-only use cases ([#862](https://github.com/OHIF/Viewers/issues/862)) ([e7e1a8a](https://github.com/OHIF/Viewers/commit/e7e1a8a)), closes [#838](https://github.com/OHIF/Viewers/issues/838)
+
+
+### BREAKING CHANGES
+
+* DICOM Seg
+
+
+
+
+
+## [0.50.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.7...@ohif/extension-dicom-html@0.50.8) (2019-09-26)
+
+
+### Bug Fixes
+
+* Add some code splitting for PWA build ([#937](https://github.com/OHIF/Viewers/issues/937)) ([8938035](https://github.com/OHIF/Viewers/commit/8938035))
+
+
+
+
+
 ## [0.50.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.6...@ohif/extension-dicom-html@0.50.7) (2019-09-12)
 
 **Note:** Version bump only for package @ohif/extension-dicom-html

extensions/dicom-html/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-html",
-  "version": "0.50.7",
+  "version": "1.0.1",
   "description": "OHIF extension for rendering structured reports to HTML",
   "author": "OHIF",
   "license": "MIT",

extensions/dicom-html/src/ConnectedDicomHtmlViewport.js

@@ -0,0 +1,33 @@
+import OHIF from '@ohif/core';
+import { connect } from 'react-redux';
+import DicomHtmlViewport from './DicomHtmlViewport';
+
+const { setViewportActive } = OHIF.redux.actions;
+
+const mapStateToProps = (state, ownProps) => {
+  const { viewportIndex, byteArray } = ownProps;
+  const activeViewportIndex = state.viewports;
+
+  return {
+    viewportIndex,
+    activeViewportIndex,
+    byteArray,
+  };
+};
+
+const mapDispatchToProps = (dispatch, ownProps) => {
+  const { viewportIndex } = ownProps;
+
+  return {
+    setViewportActive: () => {
+      dispatch(setViewportActive(viewportIndex));
+    },
+  };
+};
+
+const ConnectedDicomHtmlViewport = connect(
+  mapStateToProps,
+  mapDispatchToProps
+)(DicomHtmlViewport);
+
+export default ConnectedDicomHtmlViewport;

extensions/dicom-html/src/DicomHtmlViewport.js

@@ -1,6 +1,8 @@
 import React, { Component } from 'react';
+import PropTypes from 'prop-types';
 import * as dcmjs from 'dcmjs';
 import TypedArrayProp from './TypedArrayProp';
+
 import './DicomHtmlViewport.css';
 
 function getRelationshipString(data) {
@@ -30,7 +32,7 @@ function getValueString(data) {
       const {
         CodeMeaning,
         CodeValue,
-        CodingSchemeDesignator
+        CodingSchemeDesignator,
       } = data.ConceptNameCodeSequence;
 
       return `${CodeMeaning} (${CodeValue}, ${CodingSchemeDesignator})`;
@@ -75,7 +77,7 @@ function constructContentSequence(data, header) {
   }
 
   const result = {
-    items
+    items,
   };
 
   if (header) {
@@ -106,9 +108,7 @@ const { DicomMetaDictionary, DicomMessage } = dcmjs.data;
 function getMainData(data) {
   const root = [];
 
-  const patientValue = `${data.PatientName} (${data.PatientSex}, #${
-    data.PatientID
-  })`;
+  const patientValue = `${data.PatientName} (${data.PatientSex}, #${data.PatientID})`;
   root.push(getMainDataItem('Patient', patientValue));
 
   const studyValue = data.StudyDescription;
@@ -117,15 +117,13 @@ function getMainData(data) {
   const seriesValue = `${data.SeriesDescription} (#${data.SeriesNumber})`;
   root.push(getMainDataItem('Series', seriesValue));
 
-  const manufacturerValue = `${data.Manufacturer} (${
-    data.ManufacturerModelName
-  }, #${data.DeviceSerialNumber})`;
+  const manufacturerValue = `${data.Manufacturer} (${data.ManufacturerModelName}, #${data.DeviceSerialNumber})`;
 
   root.push(getMainDataItem('Manufacturer', manufacturerValue));
 
   const mainDataObjects = {
     CompletionFlag: 'Completion flag',
-    VerificationFlag: 'Verification flag'
+    VerificationFlag: 'Verification flag',
   };
 
   Object.keys(mainDataObjects).forEach(key => {
@@ -154,7 +152,7 @@ const getContentSequence = (data, level = 1) => {
     const {
       CodeMeaning,
       CodeValue,
-      CodingSchemeDesignator
+      CodingSchemeDesignator,
     } = data.ConceptNameCodeSequence;
 
     header = `${CodeMeaning} (${CodeValue} - ${CodingSchemeDesignator})`;
@@ -198,11 +196,14 @@ function getMainDataItem(key, value) {
 class DicomHtmlViewport extends Component {
   state = {
     content: null,
-    error: null
+    error: null,
   };
 
   static propTypes = {
-    byteArray: TypedArrayProp.uint8
+    byteArray: TypedArrayProp.uint8,
+    setViewportActive: PropTypes.func.isRequired,
+    viewportIndex: PropTypes.number.isRequired,
+    activeViewportIndex: PropTypes.number.isRequired,
   };
 
   componentDidMount() {
@@ -225,15 +226,34 @@ class DicomHtmlViewport extends Component {
     );
 
     this.setState({
-      content
+      content,
     });
   }
 
+  setViewportActiveHandler = () => {
+    const {
+      setViewportActive,
+      viewportIndex,
+      activeViewportIndex,
+    } = this.props;
+
+    if (viewportIndex !== activeViewportIndex) {
+      setViewportActive();
+    }
+  };
+
   render() {
+    const { content, error } = this.state;
+
     return (
-      <div className={'DicomHtmlViewport'}>
-        {this.state.content}
-        {this.state.error && <h2>{JSON.stringify(this.state.error)}</h2>}
+      <div
+        data-cy="dicom-html-viewport"
+        className="DicomHtmlViewport"
+        onClick={this.setViewportActiveHandler}
+        onScroll={this.setViewportActiveHandler}
+      >
+        {content}
+        {error && <h2>{JSON.stringify(error)}</h2>}
       </div>
     );
   }

extensions/dicom-html/src/OHIFDicomHtmlViewport.js

@@ -1,46 +1,36 @@
 import React, { Component } from 'react';
 import PropTypes from 'prop-types';
-import DicomHtmlViewport from './DicomHtmlViewport';
+import OHIF from '@ohif/core';
+import ConnectedDicomHtmlViewport from './ConnectedDicomHtmlViewport';
+
+const { DicomLoaderService } = OHIF.utils;
 
 class OHIFDicomHtmlViewport extends Component {
   static propTypes = {
     studies: PropTypes.object,
     displaySet: PropTypes.object,
-    viewportIndex: PropTypes.number
+    viewportIndex: PropTypes.number,
+    viewportData: PropTypes.object,
   };
 
   state = {
     byteArray: null,
-    error: null
+    error: null,
   };
 
   componentDidMount() {
-    const { displaySet } = this.props.viewportData;
-    const {
-      studyInstanceUid,
-      seriesInstanceUid,
-      sopInstanceUid,
-      wadoRoot,
-      wadoUri,
-      authorizationHeaders
-    } = displaySet;
+    const { displaySet, studies } = this.props.viewportData;
 
-    this.retrieveDicomData(
-      studyInstanceUid,
-      seriesInstanceUid,
-      sopInstanceUid,
-      wadoRoot,
-      wadoUri,
-      authorizationHeaders
-    ).then(
-      byteArray => {
+    DicomLoaderService.findDicomDataPromise(displaySet, studies).then(
+      data => {
+        const byteArray = new Uint8Array(data);
         this.setState({
-          byteArray
+          byteArray: byteArray,
         });
       },
       error => {
         this.setState({
-          error
+          error,
         });
 
         throw new Error(error);
@@ -48,32 +38,14 @@ class OHIFDicomHtmlViewport extends Component {
     );
   }
 
-  retrieveDicomData(
-    studyInstanceUid,
-    seriesInstanceUid,
-    sopInstanceUid,
-    wadoRoot,
-    wadoUri,
-    authorizationHeaders
-  ) {
-    // TODO: Passing in a lot of data we aren't using
-
-    // TODO: Authorization header depends on the server. If we ever have multiple servers
-    // we will need to figure out how / when to pass this information in.
-    return fetch(wadoUri, {
-      headers: authorizationHeaders
-    })
-      .then(response => response.arrayBuffer())
-      .then(arraybuffer => {
-        return new Uint8Array(arraybuffer);
-      });
-  }
-
   render() {
     return (
       <>
         {this.state.byteArray && (
-          <DicomHtmlViewport byteArray={this.state.byteArray} />
+          <ConnectedDicomHtmlViewport
+            byteArray={this.state.byteArray}
+            viewportIndex={this.props.viewportIndex}
+          />
         )}
         {this.state.error && <h2>{JSON.stringify(this.state.error)}</h2>}
       </>

extensions/dicom-html/src/asyncComponent.js

@@ -0,0 +1,37 @@
+/**
+ * We use this component to leverage "Code Splitting"
+ *
+ * Link: https://serverless-stack.com/chapters/code-splitting-in-create-react-app.html
+ */
+
+import React, { Component } from 'react';
+
+export default function asyncComponent(importComponent) {
+  class AsyncComponent extends Component {
+    constructor(props) {
+      super(props);
+
+      this.state = {
+        component: null,
+      };
+    }
+
+    async componentDidMount() {
+      // Add dynamically loaded component to state
+      const { default: component } = await importComponent();
+
+      this.setState({
+        component: component,
+      });
+    }
+
+    render() {
+      const C = this.state.component;
+
+      // Render the loaded component, or null
+      return C ? <C {...this.props} /> : null;
+    }
+  }
+
+  return AsyncComponent;
+}

extensions/dicom-html/src/index.js

@@ -1,5 +1,11 @@
+import asyncComponent from './asyncComponent.js';
 import OHIFDicomHtmlSopClassHandler from './OHIFDicomHtmlSopClassHandler.js';
-import OHIFDicomHtmlViewport from './OHIFDicomHtmlViewport.js';
+
+const OHIFDicomHtmlViewport = asyncComponent(() =>
+  import(
+    /* webpackChunkName: "OHIFDicomHtmlViewport" */ './OHIFDicomHtmlViewport.js'
+  )
+);
 
 export default {
   /**
@@ -12,5 +18,5 @@ export default {
   },
   getSopClassHandlerModule() {
     return OHIFDicomHtmlSopClassHandler;
-  }
+  },
 };

extensions/dicom-microscopy/.webpack/webpack.prod.js

@@ -1,3 +1,4 @@
+const webpack = require('webpack');
 const merge = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
@@ -34,5 +35,10 @@ module.exports = (env, argv) => {
       libraryExport: 'default',
       filename: pkg.main,
     },
+    plugins: [
+      new webpack.optimize.LimitChunkCountPlugin({
+           maxChunks: 1
+       })
+    ]
   });
 };

extensions/dicom-microscopy/CHANGELOG.md

@@ -3,6 +3,17 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.50.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.5...@ohif/extension-dicom-microscopy@0.50.6) (2019-09-26)
+
+
+### Bug Fixes
+
+* Add some code splitting for PWA build ([#937](https://github.com/OHIF/Viewers/issues/937)) ([8938035](https://github.com/OHIF/Viewers/commit/8938035))
+
+
+
+
+
 ## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.4...@ohif/extension-dicom-microscopy@0.50.5) (2019-09-10)
 
 

extensions/dicom-microscopy/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-microscopy",
-  "version": "0.50.5",
+  "version": "0.50.6",
   "description": "OHIF extension for Dicom Microscopy",
   "author": "OHIF",
   "license": "MIT",

extensions/dicom-microscopy/src/DicomMicroscopyViewport.js

@@ -1,10 +1,7 @@
 import React, { Component } from 'react';
 import ReactResizeDetector from 'react-resize-detector';
-import { api } from 'dicom-microscopy-viewer';
 import debounce from 'lodash.debounce';
 
-const microscopyViewer = api.VLWholeSlideMicroscopyImageViewer;
-
 class DicomMicroscopyViewport extends Component {
   state = {
     error: null,
@@ -56,9 +53,12 @@ class DicomMicroscopyViewport extends Component {
         }
         return Promise.all(promises);
       })
-      .then(metadata => {
+      .then(async metadata => {
         metadata = metadata.filter(m => m);
 
+        const { api } = await import(/* webpackChunkName: "dicom-microscopy-viewer" */ 'dicom-microscopy-viewer');
+        const microscopyViewer = api.VLWholeSlideMicroscopyImageViewer;
+
         this.viewer = new microscopyViewer({
           client: dicomWebClient,
           metadata,

extensions/dicom-microscopy/src/asyncComponent.js

@@ -0,0 +1,37 @@
+/**
+ * We use this component to leverage "Code Splitting"
+ *
+ * Link: https://serverless-stack.com/chapters/code-splitting-in-create-react-app.html
+ */
+
+import React, { Component } from 'react';
+
+export default function asyncComponent(importComponent) {
+  class AsyncComponent extends Component {
+    constructor(props) {
+      super(props);
+
+      this.state = {
+        component: null,
+      };
+    }
+
+    async componentDidMount() {
+      // Add dynamically loaded component to state
+      const { default: component } = await importComponent();
+
+      this.setState({
+        component: component,
+      });
+    }
+
+    render() {
+      const C = this.state.component;
+
+      // Render the loaded component, or null
+      return C ? <C {...this.props} /> : null;
+    }
+  }
+
+  return AsyncComponent;
+}

extensions/dicom-microscopy/src/index.js

@@ -1,5 +1,11 @@
+import asyncComponent from './asyncComponent.js';
 import DicomMicroscopySopClassHandler from './DicomMicroscopySopClassHandler.js';
-import DicomMicroscopyViewport from './DicomMicroscopyViewport.js';
+
+const DicomMicroscopyViewport = asyncComponent(() =>
+  import(
+    /* webpackChunkName: "DicomMicroscopyViewport" */ './DicomMicroscopyViewport.js'
+  )
+);
 
 export default {
   /**

extensions/dicom-pdf/CHANGELOG.md

@@ -3,6 +3,22 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [1.0.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.50.4...@ohif/extension-dicom-pdf@1.0.0) (2019-09-27)
+
+
+### Bug Fixes
+
+* 🐛 Add DicomLoaderService & FileLoaderService to fix SR, PDF, and SEG support in local file and WADO-RS-only use cases ([#862](https://github.com/OHIF/Viewers/issues/862)) ([e7e1a8a](https://github.com/OHIF/Viewers/commit/e7e1a8a)), closes [#838](https://github.com/OHIF/Viewers/issues/838)
+
+
+### BREAKING CHANGES
+
+* DICOM Seg
+
+
+
+
+
 ## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.50.3...@ohif/extension-dicom-pdf@0.50.4) (2019-09-10)
 
 

extensions/dicom-pdf/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-pdf",
-  "version": "0.50.4",
+  "version": "1.0.0",
   "description": "OHIF extension for Dicom PDF",
   "author": "OHIF",
   "license": "MIT",

extensions/dicom-pdf/src/DicomPDFViewport.js

@@ -4,41 +4,46 @@ import TypedArrayProp from './TypedArrayProp';
 
 // TODO: Should probably use dcmjs for this
 const SOP_CLASS_UIDS = {
-  ENCAPSULATED_PDF: '1.2.840.10008.5.1.4.1.1.104.1'
+  ENCAPSULATED_PDF: '1.2.840.10008.5.1.4.1.1.104.1',
 };
 
 class DicomPDFViewport extends Component {
   state = {
     fileURL: null,
-    error: null
+    error: null,
   };
 
   static propTypes = {
-    byteArray: TypedArrayProp.uint8
+    byteArray: TypedArrayProp.uint8,
   };
 
-  renderPDF = dataSet => {
-    const sopClassUid = dataSet.string('x00080016');
+  renderPDF = (dataSet, byteArray) => {
+    let pdfByteArray = byteArray;
 
-    if (sopClassUid !== SOP_CLASS_UIDS.ENCAPSULATED_PDF) {
-      throw new Error('This is not a DICOM-encapsulated PDF');
+    if (dataSet) {
+      const sopClassUid = dataSet.string('x00080016');
+
+      if (sopClassUid !== SOP_CLASS_UIDS.ENCAPSULATED_PDF) {
+        throw new Error('This is not a DICOM-encapsulated PDF');
+      }
+
+      const fileTag = dataSet.elements.x00420011;
+      const offset = fileTag.dataOffset;
+      const remainder = offset + fileTag.length;
+      pdfByteArray = dataSet.byteArray.slice(offset, remainder);
     }
 
-    const fileTag = dataSet.elements.x00420011;
-    const offset = fileTag.dataOffset;
-    const remainder = offset + fileTag.length;
-    const pdfByteArray = dataSet.byteArray.slice(offset, remainder);
     const PDF = new Blob([pdfByteArray], { type: 'application/pdf' });
     const fileURL = URL.createObjectURL(PDF);
 
     this.setState({
-      fileURL
+      fileURL,
     });
   };
 
   parseByteArray = byteArray => {
     const options = {
-      untilTag: ''
+      untilTag: '',
     };
 
     let dataSet;
@@ -47,7 +52,7 @@ class DicomPDFViewport extends Component {
       dataSet = dicomParser.parseDicom(byteArray, options);
     } catch (error) {
       this.setState({
-        error
+        error,
       });
     }
 
@@ -57,7 +62,7 @@ class DicomPDFViewport extends Component {
   componentDidMount() {
     const dataSet = this.parseByteArray(this.props.byteArray);
 
-    this.renderPDF(dataSet);
+    this.renderPDF(dataSet, this.props.byteArray);
   }
 
   render() {

extensions/dicom-pdf/src/OHIFDicomPDFViewport.js

@@ -1,60 +1,54 @@
-import React, { Component } from "react";
-import PropTypes from "prop-types";
-import OHIF from "@ohif/core";
-import OHIFComponentPlugin from "./OHIFComponentPlugin.js";
-import DicomPDFViewport from "./DicomPDFViewport";
+import React, { Component } from 'react';
+import PropTypes from 'prop-types';
+import OHIF from '@ohif/core';
+import OHIFComponentPlugin from './OHIFComponentPlugin.js';
+import DicomPDFViewport from './DicomPDFViewport';
 
-const { DICOMWeb } = OHIF;
+const { DicomLoaderService } = OHIF.utils;
 
 class OHIFDicomPDFViewport extends Component {
   static propTypes = {
     studies: PropTypes.object,
     displaySet: PropTypes.object,
-    viewportIndex: PropTypes.number
+    viewportIndex: PropTypes.number,
   };
 
   state = {
     byteArray: null,
-    error: null
+    error: null,
   };
 
-  static id = "DicomPDFViewportPDF";
+  static id = 'DicomPDFViewportPDF';
 
   static init() {
-    console.log("DicomPDFViewport init()");
+    console.log('DicomPDFViewport init()');
   }
 
   static destroy() {
-    console.log("DicomPDFViewport destroy()");
+    console.log('DicomPDFViewport destroy()');
   }
 
   componentDidMount() {
-    const { displaySet } = this.props.viewportData;
+    const { displaySet, studies } = this.props.viewportData;
     const {
       studyInstanceUid,
       seriesInstanceUid,
       sopInstanceUid,
       wadoRoot,
       wadoUri,
-      authorizationHeaders
+      authorizationHeaders,
     } = displaySet;
 
-    this.retrieveDicomData(
-      studyInstanceUid,
-      seriesInstanceUid,
-      sopInstanceUid,
-      wadoRoot,
-      wadoUri,
-      authorizationHeaders
-    ).then(
-      byteArray => {
+    DicomLoaderService.findDicomDataPromise(displaySet, studies).then(
+      data => {
+        const byteArray = new Uint8Array(data);
         this.setState({
-          byteArray
+          byteArray: byteArray,
         });
       },
       error => {
         this.setState({
-          error
+          error,
         });
 
         throw new Error(error);
@@ -62,27 +56,6 @@ class OHIFDicomPDFViewport extends Component {
     );
   }
 
-  retrieveDicomData(
-    studyInstanceUid,
-    seriesInstanceUid,
-    sopInstanceUid,
-    wadoRoot,
-    wadoUri,
-    authorizationHeaders
-  ) {
-    // TODO: Passing in a lot of data we aren't using
-
-    // TODO: Authorization header depends on the server. If we ever have multiple servers
-    // we will need to figure out how / when to pass this information in.
-    return fetch(wadoUri, {
-      headers: authorizationHeaders
-    })
-      .then(response => response.arrayBuffer())
-      .then(arraybuffer => {
-        return new Uint8Array(arraybuffer);
-      });
-  }
-
   render() {
     const { id, init, destroy } = OHIFDicomPDFViewport;
     const pluginProps = { id, init, destroy };

extensions/vtk/.webpack/webpack.prod.js

@@ -1,3 +1,4 @@
+const webpack = require('webpack');
 const merge = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
@@ -34,5 +35,10 @@ module.exports = (env, argv) => {
       libraryExport: 'default',
       filename: pkg.main,
     },
+    plugins: [
+      new webpack.optimize.LimitChunkCountPlugin({
+        maxChunks: 1,
+      }),
+    ],
   });
 };

extensions/vtk/CHANGELOG.md

@@ -3,6 +3,378 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.52.31](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.30...@ohif/extension-vtk@0.52.31) (2019-11-05)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.30](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.29...@ohif/extension-vtk@0.52.30) (2019-11-04)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.29](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.28...@ohif/extension-vtk@0.52.29) (2019-11-04)
+
+
+### Bug Fixes
+
+* 🐛 Upgrade react-vtkjs-viewport to fix volume orientation ([#1143](https://github.com/OHIF/Viewers/issues/1143)) ([1d86b1a](https://github.com/OHIF/Viewers/commit/1d86b1a102fc422053cff103de8c12ca6f437354))
+
+
+
+
+
+## [0.52.28](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.27...@ohif/extension-vtk@0.52.28) (2019-11-04)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.27](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.26...@ohif/extension-vtk@0.52.27) (2019-10-31)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.26](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.25...@ohif/extension-vtk@0.52.26) (2019-10-30)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.25](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.24...@ohif/extension-vtk@0.52.25) (2019-10-29)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.24](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.23...@ohif/extension-vtk@0.52.24) (2019-10-29)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.23](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.22...@ohif/extension-vtk@0.52.23) (2019-10-28)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.22](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.21...@ohif/extension-vtk@0.52.22) (2019-10-28)
+
+
+### Bug Fixes
+
+* MIP styling ([#1109](https://github.com/OHIF/Viewers/issues/1109)) ([0d21cc6](https://github.com/OHIF/Viewers/commit/0d21cc6ad0c47706b9e62e05fe2a0f1d86339760))
+
+
+
+
+
+## [0.52.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.20...@ohif/extension-vtk@0.52.21) (2019-10-26)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.19...@ohif/extension-vtk@0.52.20) (2019-10-26)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.19](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.18...@ohif/extension-vtk@0.52.19) (2019-10-25)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.18](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.17...@ohif/extension-vtk@0.52.18) (2019-10-25)
+
+
+### Bug Fixes
+
+* 🐛 Orthographic MPR fix ([#1092](https://github.com/OHIF/Viewers/issues/1092)) ([460e375](https://github.com/OHIF/Viewers/commit/460e375f0aa75d35f7a46b4d48e6cc706019956d))
+
+
+
+
+
+## [0.52.17](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.16...@ohif/extension-vtk@0.52.17) (2019-10-25)
+
+
+### Bug Fixes
+
+* 🐛 Fix crosshairs location when using MIP ([#1080](https://github.com/OHIF/Viewers/issues/1080)) ([b451ce4](https://github.com/OHIF/Viewers/commit/b451ce440796f13b0891739d2130e8ee71993d3d))
+
+
+
+
+
+## [0.52.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.15...@ohif/extension-vtk@0.52.16) (2019-10-23)
+
+
+### Bug Fixes
+
+* 🐛 Switch to orhtographic view for 2D MPR ([#1074](https://github.com/OHIF/Viewers/issues/1074)) ([13d337a](https://github.com/OHIF/Viewers/commit/13d337aaabb8dadf6366c6262c5e47e7781edd08))
+
+
+
+
+
+## [0.52.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.14...@ohif/extension-vtk@0.52.15) (2019-10-23)
+
+
+### Performance Improvements
+
+* ⚡️ Throttle UI refresh of synced WL value in vtk port ([#1070](https://github.com/OHIF/Viewers/issues/1070)) ([9d08e81](https://github.com/OHIF/Viewers/commit/9d08e81aa5def63a5e34f464aae099f7c29f0ac5))
+
+
+
+
+
+## [0.52.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.13...@ohif/extension-vtk@0.52.14) (2019-10-22)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.12...@ohif/extension-vtk@0.52.13) (2019-10-18)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.11...@ohif/extension-vtk@0.52.12) (2019-10-18)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.10...@ohif/extension-vtk@0.52.11) (2019-10-15)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.9...@ohif/extension-vtk@0.52.10) (2019-10-15)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.8...@ohif/extension-vtk@0.52.9) (2019-10-14)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.7...@ohif/extension-vtk@0.52.8) (2019-10-14)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.6...@ohif/extension-vtk@0.52.7) (2019-10-11)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.5...@ohif/extension-vtk@0.52.6) (2019-10-11)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.4...@ohif/extension-vtk@0.52.5) (2019-10-10)
+
+
+### Performance Improvements
+
+* ⚡️ Update react-vtkjs-viewport for performance improvement ([6ee5094](https://github.com/OHIF/Viewers/commit/6ee5094))
+
+
+
+
+
+## [0.52.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.3...@ohif/extension-vtk@0.52.4) (2019-10-10)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.2...@ohif/extension-vtk@0.52.3) (2019-10-09)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.52.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.1...@ohif/extension-vtk@0.52.2) (2019-10-09)
+
+
+### Performance Improvements
+
+* 🎸 Update vtk viewport for faster image reconstruction ([#1016](https://github.com/OHIF/Viewers/issues/1016)) ([8513ad9](https://github.com/OHIF/Viewers/commit/8513ad9))
+
+
+
+
+
+## [0.52.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.0...@ohif/extension-vtk@0.52.1) (2019-10-04)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+# [0.52.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.3...@ohif/extension-vtk@0.52.0) (2019-10-03)
+
+
+### Features
+
+* 🎸 Synced Window Leveling ([559b637](https://github.com/OHIF/Viewers/commit/559b637)), closes [#558](https://github.com/OHIF/Viewers/issues/558)
+
+
+
+
+
+## [0.51.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.2...@ohif/extension-vtk@0.51.3) (2019-10-03)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.51.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.1...@ohif/extension-vtk@0.51.2) (2019-10-02)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.51.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.0...@ohif/extension-vtk@0.51.1) (2019-10-01)
+
+
+### Bug Fixes
+
+* **rotate:** Use new MPR rotate in react-vtkjs-viewport 0.1.2 ([#964](https://github.com/OHIF/Viewers/issues/964)) ([8503cbc](https://github.com/OHIF/Viewers/commit/8503cbc))
+
+
+
+
+
+# [0.51.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.23...@ohif/extension-vtk@0.51.0) (2019-10-01)
+
+
+### Features
+
+* 🎸 MPR UI improvements. Added MinIP, AvgIP, slab thickness slider and mode toggle ([#947](https://github.com/OHIF/Viewers/issues/947)) ([c79c0c3](https://github.com/OHIF/Viewers/commit/c79c0c3))
+
+
+
+
+
+## [0.50.23](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.22...@ohif/extension-vtk@0.50.23) (2019-10-01)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.22](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.21...@ohif/extension-vtk@0.50.22) (2019-09-27)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.20...@ohif/extension-vtk@0.50.21) (2019-09-27)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.19...@ohif/extension-vtk@0.50.20) (2019-09-26)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.19](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.18...@ohif/extension-vtk@0.50.19) (2019-09-26)
+
+
+### Bug Fixes
+
+* Add some code splitting for PWA build ([#937](https://github.com/OHIF/Viewers/issues/937)) ([8938035](https://github.com/OHIF/Viewers/commit/8938035))
+
+
+
+
+
+## [0.50.18](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.17...@ohif/extension-vtk@0.50.18) (2019-09-23)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
 ## [0.50.17](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.16...@ohif/extension-vtk@0.50.17) (2019-09-19)
 
 **Note:** Version bump only for package @ohif/extension-vtk

extensions/vtk/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-vtk",
-  "version": "0.50.17",
+  "version": "0.52.31",
   "description": "OHIF extension for VTK.js",
   "author": "OHIF",
   "license": "MIT",
@@ -48,11 +48,12 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",
-    "react-vtkjs-viewport": "0.1.0"
+    "lodash.throttle": "^4.1.1",
+    "react-vtkjs-viewport": "^0.3.9"
   },
   "devDependencies": {
-    "@ohif/core": "^0.50.9",
-    "@ohif/ui": "^0.51.1",
+    "@ohif/core": "^1.6.2",
+    "@ohif/ui": "^0.59.1",
     "cornerstone-tools": "^4.0.9",
     "cornerstone-wado-image-loader": "^3.0.0",
     "dcmjs": "^0.6.1",

extensions/vtk/src/ConnectedVTKViewport.js

@@ -1,6 +1,6 @@
-import OHIF from "@ohif/core";
-import { View2D } from "react-vtkjs-viewport";
-import { connect } from "react-redux";
+import OHIF from '@ohif/core';
+import { View2D } from 'react-vtkjs-viewport';
+import { connect } from 'react-redux';
 
 const { setViewportActive, setViewportSpecificData } = OHIF.redux.actions;
 
@@ -24,7 +24,7 @@ const mapStateToProps = (state, ownProps) => {
     // Hopefully this doesn't break anything under the hood for this one
     // activeTool: activeButton && activeButton.command,
     ...dataFromStore,
-    enableStackPrefetch: isActive
+    enableStackPrefetch: isActive,
   };
 };
 
@@ -38,7 +38,7 @@ const mapDispatchToProps = (dispatch, ownProps) => {
 
     setViewportSpecificData: data => {
       dispatch(setViewportSpecificData(viewportIndex, data));
-    }
+    },
   };
 };
 
@@ -63,10 +63,10 @@ const mergeProps = (propsFromState, propsFromDispatch, ownProps) => {
       // Store the API details for later
       //setViewportSpecificData({ vtkApi: api });
 
-      if (afterCreation && typeof afterCreation === "function") {
+      if (afterCreation && typeof afterCreation === 'function') {
         afterCreation(api);
       }
-    }
+    },
   };
   return props;
 };

extensions/vtk/src/LoadingIndicator.css

@@ -3,15 +3,15 @@
 }
 
 .loadingIndicator {
-  background-color: rgba(0, 0, 0, 0.75);
-  font-size: 18px;
-  height: 100%;
+  background-color: rgba(0, 0, 0, 0);
+  font-size: 8px;
+  height: 20%;
   overflow: hidden;
   position: absolute;
   top: 0;
   width: 100%;
   z-index: 1;
 
-  /* Necessary for click-through to cornerstone element below */
+  /* Necessary for click-through to vtkjs element below */
   pointer-events: none;
 }

extensions/vtk/src/LoadingIndicator.js

@@ -1,7 +1,7 @@
 import './LoadingIndicator.css';
 
 import React, { PureComponent } from 'react';
-
+import { withTranslation } from 'react-i18next';
 import PropTypes from 'prop-types';
 
 class LoadingIndicator extends PureComponent {
@@ -35,7 +35,8 @@ class LoadingIndicator extends PureComponent {
           <div className="imageViewerLoadingIndicator loadingIndicator">
             <div className="indicatorContents">
               <p>
-                Loading... <i className="fa fa-spin fa-circle-o-notch fa-fw" />{' '}
+                {this.props.t('Reformatting')}...
+                <i className="fa fa-spin fa-circle-o-notch fa-fw" />
                 {percComplete}
               </p>
             </div>
@@ -46,4 +47,4 @@ class LoadingIndicator extends PureComponent {
   }
 }
 
-export default LoadingIndicator;
+export default withTranslation('Common')(LoadingIndicator);

extensions/vtk/src/OHIFVTKViewport.js

@@ -1,16 +1,16 @@
-import React, { Component } from "react";
-import { getImageData, loadImageData } from "react-vtkjs-viewport";
+import React, { Component } from 'react';
+import { getImageData, loadImageData } from 'react-vtkjs-viewport';
 
-import ConnectedVTKViewport from "./ConnectedVTKViewport";
-import LoadingIndicator from "./LoadingIndicator.js";
-import OHIF from "@ohif/core";
-import PropTypes from "prop-types";
-import cornerstone from "cornerstone-core";
-import handleSegmentationStorage from "./handleSegmentationStorage.js";
-import vtkDataArray from "vtk.js/Sources/Common/Core/DataArray";
-import vtkImageData from "vtk.js/Sources/Common/DataModel/ImageData";
-import vtkVolume from "vtk.js/Sources/Rendering/Core/Volume";
-import vtkVolumeMapper from "vtk.js/Sources/Rendering/Core/VolumeMapper";
+import ConnectedVTKViewport from './ConnectedVTKViewport';
+import LoadingIndicator from './LoadingIndicator.js';
+import OHIF from '@ohif/core';
+import PropTypes from 'prop-types';
+import cornerstone from 'cornerstone-core';
+import handleSegmentationStorage from './handleSegmentationStorage.js';
+import vtkDataArray from 'vtk.js/Sources/Common/Core/DataArray';
+import vtkImageData from 'vtk.js/Sources/Common/DataModel/ImageData';
+import vtkVolume from 'vtk.js/Sources/Rendering/Core/Volume';
+import vtkVolumeMapper from 'vtk.js/Sources/Rendering/Core/VolumeMapper';
 
 const { StackManager } = OHIF.utils;
 
@@ -24,7 +24,7 @@ cornerstone.metaData.addProvider(
 StackManager.setMetadataProvider(metadataProvider);
 
 const SOP_CLASSES = {
-  SEGMENTATION_STORAGE: "1.2.840.10008.5.1.4.1.1.66.4"
+  SEGMENTATION_STORAGE: '1.2.840.10008.5.1.4.1.1.66.4',
 };
 
 const specialCaseHandlers = {};
@@ -42,7 +42,7 @@ const volumeCache = {};
  */
 function createLabelMapImageData(backgroundImageData) {
   const labelMapData = vtkImageData.newInstance(
-    backgroundImageData.get("spacing", "origin", "direction")
+    backgroundImageData.get('spacing', 'origin', 'direction')
   );
   labelMapData.setDimensions(backgroundImageData.getDimensions());
   labelMapData.computeTransforms();
@@ -50,7 +50,7 @@ function createLabelMapImageData(backgroundImageData) {
   const values = new Uint8Array(backgroundImageData.getNumberOfPoints());
   const dataArray = vtkDataArray.newInstance({
     numberOfComponents: 1, // labelmap with single component
-    values
+    values,
   });
   labelMapData.getPointData().setScalars(dataArray);
 
@@ -61,24 +61,24 @@ class OHIFVTKViewport extends Component {
   state = {
     volumes: null,
     paintFilterLabelMapImageData: null,
-    paintFilterBackgroundImageData: null
+    paintFilterBackgroundImageData: null,
   };
 
   static propTypes = {
     studies: PropTypes.object,
     displaySet: PropTypes.object,
     viewportIndex: PropTypes.number,
-    children: PropTypes.node
+    children: PropTypes.node,
   };
 
-  static id = "OHIFVTKViewport";
+  static id = 'OHIFVTKViewport';
 
   static init() {
-    console.log("OHIFVTKViewport init()");
+    console.log('OHIFVTKViewport init()');
   }
 
   static destroy() {
-    console.log("OHIFVTKViewport destroy()");
+    console.log('OHIFVTKViewport destroy()');
     StackManager.clearStacks();
   }
 
@@ -109,7 +109,7 @@ class OHIFVTKViewport extends Component {
     } else if (sopInstanceUid) {
       const index = stack.imageIds.findIndex(imageId => {
         const sopCommonModule = cornerstone.metaData.get(
-          "sopCommonModule",
+          'sopCommonModule',
           imageId
         );
         if (!sopCommonModule) {
@@ -151,8 +151,8 @@ class OHIFVTKViewport extends Component {
 
     switch (sopClassUid) {
       case SOP_CLASSES.SEGMENTATION_STORAGE:
-        throw new Error("Not yet implemented");
-
+        throw new Error('Not yet implemented');
+      /*
         const data = handleSegmentationStorage(
           stack.imageIds,
           displaySetInstanceUid
@@ -164,72 +164,82 @@ class OHIFVTKViewport extends Component {
         return loadImageData(imageDataObject).then(() => {
           return {
             data: imageDataObject.vtkImageData,
-            labelmap: labelmapDataObject
+            labelmap: labelmapDataObject,
           };
         });
+        */
       default:
         imageDataObject = getImageData(stack.imageIds, displaySetInstanceUid);
 
-        return loadImageData(imageDataObject).then(() => {
-          return {
-            data: imageDataObject.vtkImageData
-          };
-        });
+        return imageDataObject;
     }
   };
 
-  getOrCreateVolume(data, displaySetInstanceUid) {
+  getOrCreateVolume(imageDataObject, displaySetInstanceUid) {
     if (volumeCache[displaySetInstanceUid]) {
       return volumeCache[displaySetInstanceUid];
     }
 
+    const { vtkImageData, imageMetaData0 } = imageDataObject;
+    const { windowWidth, windowCenter, modality } = imageMetaData0;
+
+    let lower;
+    let upper;
+
+    if (modality === 'PT') {
+      // For PET just set the range to 0-5 SUV
+      lower = 0;
+      upper = 5;
+    } else {
+      lower = windowCenter - windowWidth / 2.0;
+      upper = windowCenter + windowWidth / 2.0;
+    }
+
     const volumeActor = vtkVolume.newInstance();
     const volumeMapper = vtkVolumeMapper.newInstance();
 
     volumeActor.setMapper(volumeMapper);
-    volumeMapper.setInputData(data);
+    volumeMapper.setInputData(vtkImageData);
 
-    const range = data.getPointData().getScalars().getRange();
+    volumeActor
+      .getProperty()
+      .getRGBTransferFunction(0)
+      .setRange(lower, upper);
 
-    // TODO: For PET we might want to just set this to 0-5 SUV
-    volumeActor.getProperty().getRGBTransferFunction(0).setRange(range[0], range[1]);
-
-    // TODO: Should look into implementing autoAdjustSampleDistance in vtk
-    const sampleDistance =
-      1.2 *
-      Math.sqrt(
-        data
-          .getSpacing()
-          .map((v) => v * v)
-          .reduce((a, b) => a + b, 0)
-      );
+    const spacing = vtkImageData.getSpacing();
+    // Set the sample distance to half the mean length of one side. This is where the divide by 6 comes from.
+    // https://github.com/Kitware/VTK/blob/6b559c65bb90614fb02eb6d1b9e3f0fca3fe4b0b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.cxx#L344
+    const sampleDistance = (spacing[0] + spacing[1] + spacing[2]) / 6;
 
     volumeMapper.setSampleDistance(sampleDistance);
 
+    // Be generous to surpress warnings, as the logging really hurts performance.
+    // TODO: maybe we should auto adjust samples to 1000.
+    volumeMapper.setMaximumSamplesPerRay(4000);
+
     volumeCache[displaySetInstanceUid] = volumeActor;
 
     return volumeActor;
   }
 
-  async setStateFromProps() {
+  setStateFromProps() {
     const { studies, displaySet } = this.props.viewportData;
     const {
       studyInstanceUid,
       displaySetInstanceUid,
       sopClassUids,
       sopInstanceUid,
-      frameIndex
+      frameIndex,
     } = displaySet;
 
     if (sopClassUids.length > 1) {
       console.warn(
-        "More than one SOPClassUid in the same series is not yet supported."
+        'More than one SOPClassUid in the same series is not yet supported.'
       );
     }
 
     const sopClassUid = sopClassUids[0];
-
-    let { data, labelmap } = await this.getViewportData(
+    const imageDataObject = this.getViewportData(
       studies,
       studyInstanceUid,
       displaySetInstanceUid,
@@ -238,19 +248,45 @@ class OHIFVTKViewport extends Component {
       frameIndex
     );
 
+    this.imageDataObject = imageDataObject;
+
     // TODO: Temporarily disabling this since it is not yet
     // being used and hurts performance significantly.
     /*if (!labelmap) {
       labelmap = createLabelMapImageData(data);
     }*/
 
-    const volumeActor = this.getOrCreateVolume(data, displaySetInstanceUid);
+    const volumeActor = this.getOrCreateVolume(
+      imageDataObject,
+      displaySetInstanceUid
+    );
 
     this.setState({
-      volumes: [volumeActor],
-      paintFilterBackgroundImageData: data,
-      paintFilterLabelMapImageData: labelmap
+      paintFilterBackgroundImageData: imageDataObject.vtkImageData,
+      paintFilterLabelMapImageData: null, // TODO
+      percentComplete: 0,
     });
+
+    this.setState(
+      {
+        paintFilterBackgroundImageData: imageDataObject.vtkImageData,
+        paintFilterLabelMapImageData: null, // TODO
+        percentComplete: 0,
+      },
+      () => {
+        this.loadProgressively(imageDataObject);
+
+        // TODO: There must be a better way to do this.
+        // We do this so that if all the data is available the react-vtkjs-viewport
+        // Will render _something_ before the volumes are set and the volume
+        // Construction that happens in react-vtkjs-viewport locks up the CPU.
+        setTimeout(() => {
+          this.setState({
+            volumes: [volumeActor],
+          });
+        }, 200);
+      }
+    );
   }
 
   componentDidMount() {
@@ -271,6 +307,37 @@ class OHIFVTKViewport extends Component {
     }
   }
 
+  loadProgressively(imageDataObject) {
+    loadImageData(imageDataObject);
+
+    const { isLoading, insertPixelDataPromises } = imageDataObject;
+
+    const numberOfFrames = insertPixelDataPromises.length;
+
+    if (!isLoading) {
+      this.setState({ isLoaded: true });
+      return;
+    }
+
+    insertPixelDataPromises.forEach(promise => {
+      promise.then(numberProcessed => {
+        const percentComplete = Math.floor(
+          (numberProcessed * 100) / numberOfFrames
+        );
+
+        if (percentComplete !== this.state.percentComplete) {
+          this.setState({
+            percentComplete,
+          });
+        }
+      });
+    });
+
+    Promise.all(insertPixelDataPromises).then(() => {
+      this.setState({ isLoaded: true });
+    });
+  }
+
   render() {
     let childrenWithProps = null;
 
@@ -279,30 +346,32 @@ class OHIFVTKViewport extends Component {
       childrenWithProps = this.props.children.map((child, index) => {
         return React.cloneElement(child, {
           viewportIndex: this.props.viewportIndex,
-          key: index
+          key: index,
         });
       });
     }
 
-    const style = { width: "100%", height: "100%", position: "relative" };
+    const style = { width: '100%', height: '100%', position: 'relative' };
 
     return (
       <>
-        {this.state.volumes ? (
-          <ConnectedVTKViewport
-            volumes={this.state.volumes}
-            paintFilterLabelMapImageData={
-              this.state.paintFilterLabelMapImageData
-            }
-            paintFilterBackgroundImageData={
-              this.state.paintFilterBackgroundImageData
-            }
-            viewportIndex={this.props.viewportIndex}
-          />
-        ) : (
-          <div style={style}>
-            <LoadingIndicator />
-          </div>
+        <div style={style}>
+          {!this.state.isLoaded && (
+            <LoadingIndicator percentComplete={this.state.percentComplete} />
+          )}
+          {this.state.volumes && (
+            <ConnectedVTKViewport
+              volumes={this.state.volumes}
+              paintFilterLabelMapImageData={
+                this.state.paintFilterLabelMapImageData
+              }
+              paintFilterBackgroundImageData={
+                this.state.paintFilterBackgroundImageData
+              }
+              viewportIndex={this.props.viewportIndex}
+            />
+          )}
+        </div>
         )}
         {childrenWithProps}
       </>

extensions/vtk/src/asyncComponent.js

@@ -0,0 +1,37 @@
+/**
+ * We use this component to leverage "Code Splitting"
+ *
+ * Link: https://serverless-stack.com/chapters/code-splitting-in-create-react-app.html
+ */
+
+import React, { Component } from 'react';
+
+export default function asyncComponent(importComponent) {
+  class AsyncComponent extends Component {
+    constructor(props) {
+      super(props);
+
+      this.state = {
+        component: null,
+      };
+    }
+
+    async componentDidMount() {
+      // Add dynamically loaded component to state
+      const { default: component } = await importComponent();
+
+      this.setState({
+        component: component,
+      });
+    }
+
+    render() {
+      const C = this.state.component;
+
+      // Render the loaded component, or null
+      return C ? <C {...this.props} /> : null;
+    }
+  }
+
+  return AsyncComponent;
+}

extensions/vtk/src/commandsModule.js

@@ -2,68 +2,28 @@ import {
   vtkInteractorStyleMPRCrosshairs,
   vtkInteractorStyleMPRWindowLevel,
   vtkInteractorStyleMPRSlice,
+  vtkInteractorStyleMPRRotate,
   vtkSVGCrosshairsWidget,
-  vtkSVGWidgetManager,
 } from 'react-vtkjs-viewport';
 
 import setMPRLayout from './utils/setMPRLayout.js';
 import setViewportToVTK from './utils/setViewportToVTK.js';
-import vtkCoordinate from 'vtk.js/Sources/Rendering/Core/Coordinate';
-import vtkMath from 'vtk.js/Sources/Common/Core/Math';
-import vtkMatrixBuilder from 'vtk.js/Sources/Common/Core/MatrixBuilder';
 import Constants from 'vtk.js/Sources/Rendering/Core/VolumeMapper/Constants.js';
+import throttle from 'lodash.throttle';
 
 const { BlendMode } = Constants;
 
 // TODO: Put this somewhere else
 let apis = {};
-let currentSlabThickness = 0.1;
-
-function getCrosshairCallbackForIndex(index) {
-  return ({ worldPos }) => {
-    // Set camera focal point to world coordinate for linked views
-    apis.forEach((api, viewportIndex) => {
-      if (viewportIndex !== index) {
-        // We are basically doing the same as getSlice but with the world coordinate
-        // that we want to jump to instead of the camera focal point.
-        // I would rather do the camera adjustment directly but I keep
-        // doing it wrong and so this is good enough for now.
-        const renderWindow = api.genericRenderWindow.getRenderWindow();
-
-        const istyle = renderWindow.getInteractor().getInteractorStyle();
-        const sliceNormal = istyle.getSliceNormal();
-        const transform = vtkMatrixBuilder
-          .buildFromDegree()
-          .identity()
-          .rotateFromDirections(sliceNormal, [1, 0, 0]);
-
-        const mutatedWorldPos = worldPos.slice();
-        transform.apply(mutatedWorldPos);
-        const slice = mutatedWorldPos[0];
-
-        istyle.setSlice(slice);
-
-        renderWindow.render();
-      }
-
-      const renderer = api.genericRenderWindow.getRenderer();
-      const wPos = vtkCoordinate.newInstance();
-      wPos.setCoordinateSystemToWorld();
-      wPos.setValue(worldPos);
-
-      const displayPosition = wPos.getComputedDisplayValue(renderer);
-      const { svgWidgetManager } = api;
-      api.svgWidgets.crosshairsWidget.setPoint(
-        displayPosition[0],
-        displayPosition[1]
-      );
-      svgWidgetManager.render();
-    });
-  };
-}
 
 async function _getActiveViewportVTKApi(viewports) {
-  const { layout, viewportSpecificData, activeViewportIndex } = viewports;
+  const {
+    numRows,
+    numColumns,
+    layout,
+    viewportSpecificData,
+    activeViewportIndex,
+  } = viewports;
 
   const currentData = layout.viewports[activeViewportIndex];
   if (currentData && currentData.plugin === 'vtk') {
@@ -81,6 +41,8 @@ async function _getActiveViewportVTKApi(viewports) {
       api = await setViewportToVTK(
         displaySet,
         activeViewportIndex,
+        numRows,
+        numColumns,
         layout,
         viewportSpecificData
       );
@@ -94,49 +56,13 @@ async function _getActiveViewportVTKApi(viewports) {
 
 function _setView(api, sliceNormal, viewUp) {
   const renderWindow = api.genericRenderWindow.getRenderWindow();
-  const renderer = api.genericRenderWindow.getRenderer();
-  const camera = renderer.getActiveCamera();
   const istyle = renderWindow.getInteractor().getInteractorStyle();
   istyle.setSliceNormal(...sliceNormal);
-  camera.setViewUp(...viewUp);
+  istyle.setViewUp(...viewUp);
 
   renderWindow.render();
 }
 
-function switchMPRInteractors(api, istyle) {
-  const renderWindow = api.genericRenderWindow.getRenderWindow();
-  const renderer = api.genericRenderWindow.getRenderer();
-  const camera = renderer.getActiveCamera();
-  const currentIStyle = renderWindow.getInteractor().getInteractorStyle();
-
-  let currentNormal;
-  if (currentIStyle.getSliceNormal && istyle.getSliceNormal) {
-    currentNormal = currentIStyle.getSliceNormal();
-  }
-
-  let currentSlabThickness;
-  if (currentIStyle.getSlabThickness && istyle.getSlabThickness) {
-    currentSlabThickness = currentIStyle.getSlabThickness();
-  }
-
-  renderWindow.getInteractor().setInteractorStyle(istyle);
-
-  // TODO: Not sure why this is required the second time this function is called
-  istyle.setInteractor(renderWindow.getInteractor());
-
-  if (istyle.getVolumeMapper() !== api.volumes[0]) {
-    if (currentNormal) {
-      istyle.setSliceNormal(currentNormal);
-    }
-
-    if (currentSlabThickness) {
-      istyle.setSlabThickness(currentSlabThickness);
-    }
-
-    istyle.setVolumeMapper(api.volumes[0]);
-  }
-}
-
 const actions = {
   axial: async ({ viewports }) => {
     const api = await _getActiveViewportVTKApi(viewports);
@@ -161,69 +87,91 @@ const actions = {
   },
   enableRotateTool: () => {
     apis.forEach(api => {
-      const istyle = vtkInteractorStyleMPRSlice.newInstance();
+      const istyle = vtkInteractorStyleMPRRotate.newInstance();
 
-      switchMPRInteractors(api, istyle);
+      api.setInteractorStyle({ istyle });
     });
   },
   enableCrosshairsTool: () => {
-    apis.forEach((api, index) => {
+    apis.forEach((api, apiIndex) => {
       const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
 
-      switchMPRInteractors(api, istyle);
-
-      istyle.setCallback(getCrosshairCallbackForIndex(index));
+      api.setInteractorStyle({
+        istyle,
+        configuration: { apis, apiIndex },
+      });
     });
   },
   enableLevelTool: () => {
+    function updateVOI(apis, windowWidth, windowCenter) {
+      apis.forEach(api => {
+        api.updateVOI(windowWidth, windowCenter);
+      });
+    }
+
+    const throttledUpdateVOIs = throttle(updateVOI, 16, { trailing: true }); // ~ 60 fps
+
+    const callbacks = {
+      setOnLevelsChanged: ({ windowCenter, windowWidth }) => {
+        apis.forEach(api => {
+          const renderWindow = api.genericRenderWindow.getRenderWindow();
+
+          renderWindow.render();
+        });
+
+        throttledUpdateVOIs(apis, windowWidth, windowCenter);
+      },
+    };
+
     apis.forEach(api => {
       const istyle = vtkInteractorStyleMPRWindowLevel.newInstance();
 
-      switchMPRInteractors(api, istyle);
+      api.setInteractorStyle({ istyle, callbacks });
     });
   },
-  setSlabThickness: slabThickness => {
-    currentSlabThickness = slabThickness;
-
+  setSlabThickness: ({ slabThickness }) => {
     apis.forEach(api => {
-      const renderWindow = api.genericRenderWindow.getRenderWindow();
-      const istyle = renderWindow.getInteractor().getInteractorStyle();
-
-      if (istyle.setSlabThickness) {
-        istyle.setSlabThickness(currentSlabThickness);
-
-        // TODO: Do this inside the interactors in a setSlabThickness function instead
-        const renderer = api.genericRenderWindow.getRenderer();
-        const camera = renderer.getActiveCamera();
-        const dist = camera.getDistance();
-        const near = dist - currentSlabThickness / 2;
-        const far = dist + currentSlabThickness / 2;
-
-        camera.setClippingRange(near, far);
-      }
-
-      renderWindow.render();
+      api.setSlabThickness(slabThickness);
     });
   },
   changeSlabThickness: ({ change }) => {
-    currentSlabThickness += change;
-    currentSlabThickness = Math.max(currentSlabThickness, 0.1);
+    apis.forEach(api => {
+      const slabThickness = Math.max(api.getSlabThickness() + change, 0.1);
 
+      api.setSlabThickness(slabThickness);
+    });
+  },
+  setBlendModeToComposite: () => {
     apis.forEach(api => {
       const renderWindow = api.genericRenderWindow.getRenderWindow();
       const istyle = renderWindow.getInteractor().getInteractorStyle();
 
-      if (istyle.setSlabThickness) {
-        istyle.setSlabThickness(currentSlabThickness);
+      const slabThickness = api.getSlabThickness();
+
+      const mapper = api.volumes[0].getMapper();
+      if (mapper.setBlendModeToComposite) {
+        mapper.setBlendModeToComposite();
       }
 
+      if (istyle.setSlabThickness) {
+        istyle.setSlabThickness(slabThickness);
+      }
+      renderWindow.render();
+    });
+  },
+  setBlendModeToMaximumIntensity: () => {
+    apis.forEach(api => {
+      const renderWindow = api.genericRenderWindow.getRenderWindow();
+      const mapper = api.volumes[0].getMapper();
+      if (mapper.setBlendModeToMaximumIntensity) {
+        mapper.setBlendModeToMaximumIntensity();
+      }
       renderWindow.render();
     });
   },
   setBlendMode: ({ blendMode }) => {
     apis.forEach(api => {
       const renderWindow = api.genericRenderWindow.getRenderWindow();
-      const istyle = renderWindow.getInteractor().getInteractorStyle();
 
       api.volumes[0].getMapper().setBlendMode(blendMode);
 
@@ -231,75 +179,60 @@ const actions = {
     });
   },
   mpr2d: async ({ viewports }) => {
+    // TODO push a lot of this backdoor logic lower down to the library level.
     const displaySet =
       viewports.viewportSpecificData[viewports.activeViewportIndex];
 
-    let apiByViewport;
+    // Get current VOI if cornerstone viewport.
+    const cornerstoneVOI = getVOIFromCornerstoneViewport(displaySet);
+
+    const viewportProps = [
+      {
+        //Axial
+        orientation: {
+          sliceNormal: [0, 0, 1],
+          viewUp: [0, -1, 0],
+        },
+      },
+      {
+        // Sagital
+        orientation: {
+          sliceNormal: [1, 0, 0],
+          viewUp: [0, 0, 1],
+        },
+      },
+      {
+        // Coronal
+        orientation: {
+          sliceNormal: [0, 1, 0],
+          viewUp: [0, 0, 1],
+        },
+      },
+    ];
+
     try {
-      apiByViewport = await setMPRLayout(displaySet);
+      apis = await setMPRLayout(displaySet, viewportProps, 1, 3);
     } catch (error) {
       throw new Error(error);
     }
 
-    apis = apiByViewport;
+    if (cornerstoneVOI) {
+      setVOI(cornerstoneVOI);
+    }
 
-    /*const rgbTransferFunction = apiByViewport[0].volumes[0]
-      .getProperty()
-      .getRGBTransferFunction(0);
-    rgbTransferFunction.onModified(() => {
-      apiByViewport.forEach(a => {
-        const renderWindow = a.genericRenderWindow.getRenderWindow();
-
-        renderWindow.render();
-      });
-    });*/
-
-    apiByViewport.forEach((api, index) => {
-      const renderWindow = api.genericRenderWindow.getRenderWindow();
-      const renderer = api.genericRenderWindow.getRenderer();
-      const camera = renderer.getActiveCamera();
+    // Add widgets and set default interactorStyle of each viewport.
+    apis.forEach((api, apiIndex) => {
+      api.addSVGWidget(
+        vtkSVGCrosshairsWidget.newInstance(),
+        'crosshairsWidget'
+      );
 
       const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
-      renderWindow.getInteractor().setInteractorStyle(istyle);
 
-      istyle.setVolumeMapper(api.volumes[0]);
-      istyle.setCallback(getCrosshairCallbackForIndex(index));
-
-      const svgWidgetManager = vtkSVGWidgetManager.newInstance();
-      svgWidgetManager.setRenderer(renderer);
-      svgWidgetManager.setScale(1);
-
-      const crosshairsWidget = vtkSVGCrosshairsWidget.newInstance();
-
-      svgWidgetManager.addWidget(crosshairsWidget);
-      svgWidgetManager.render();
-
-      api.svgWidgetManager = svgWidgetManager;
-      api.svgWidgets = {
-        crosshairsWidget,
-      };
-
-      switch (index) {
-        default:
-        case 0:
-          //Axial
-          istyle.setSliceNormal(0, 0, 1);
-          camera.setViewUp(0, -1, 0);
-
-          break;
-        case 1:
-          // sagittal
-          istyle.setSliceNormal(1, 0, 0);
-          camera.setViewUp(0, 0, 1);
-          break;
-        case 2:
-          // Coronal
-          istyle.setSliceNormal(0, 1, 0);
-          camera.setViewUp(0, 0, 1);
-          break;
-      }
-
-      renderWindow.render();
+      api.setInteractorStyle({
+        istyle,
+        configuration: { apis, apiIndex },
+      });
     });
   },
 };
@@ -338,12 +271,12 @@ const definitions = {
     options: {},
   },
   setBlendModeToComposite: {
-    commandFn: actions.setBlendMode,
+    commandFn: actions.setBlendModeToComposite,
     storeContexts: [],
     options: { blendMode: BlendMode.COMPOSITE_BLEND },
   },
   setBlendModeToMaximumIntensity: {
-    commandFn: actions.setBlendMode,
+    commandFn: actions.setBlendModeToMaximumIntensity,
     storeContexts: [],
     options: { blendMode: BlendMode.MAXIMUM_INTENSITY_BLEND },
   },
@@ -389,3 +322,41 @@ export default {
   definitions,
   defaultContext: 'ACTIVE_VIEWPORT::VTK',
 };
+
+function getVOIFromCornerstoneViewport(displaySet) {
+  const cornerstoneElement = cornerstone.getEnabledElement(displaySet.dom);
+
+  if (cornerstoneElement) {
+    const imageId = cornerstoneElement.image.imageId;
+
+    const { modality } = cornerstone.metaData.get(
+      'generalSeriesModule',
+      imageId
+    );
+
+    if (modality !== 'PT') {
+      const { windowWidth, windowCenter } = cornerstoneElement.viewport.voi;
+
+      return {
+        windowWidth,
+        windowCenter,
+      };
+    }
+  }
+}
+
+function setVOI(voi) {
+  const { windowWidth, windowCenter } = voi;
+  const lower = windowCenter - windowWidth / 2.0;
+  const upper = windowCenter + windowWidth / 2.0;
+
+  const rgbTransferFunction = apis[0].volumes[0]
+    .getProperty()
+    .getRGBTransferFunction(0);
+
+  rgbTransferFunction.setRange(lower, upper);
+
+  apis.forEach(api => {
+    api.updateVOI(windowWidth, windowCenter);
+  });
+}

extensions/vtk/src/index.js

@@ -1,9 +1,13 @@
-import OHIFVTKViewport from './OHIFVTKViewport.js';
+import asyncComponent from './asyncComponent.js';
 import commandsModule from './commandsModule.js';
 import toolbarModule from './toolbarModule.js';
 // This feels weird
 // import loadLocales from './loadLocales';
 
+const OHIFVTKViewport = asyncComponent(() =>
+  import(/* webpackChunkName: "OHIFVTKViewport" */ './OHIFVTKViewport.js')
+);
+
 const vtkExtension = {
   /**
    * Only required property. Should be a unique value across all extensions.

extensions/vtk/src/toolbarComponents/SlabThicknessToolbarComponent.js

@@ -0,0 +1,218 @@
+import React, { useState, useEffect } from 'react';
+import PropTypes from 'prop-types';
+import classnames from 'classnames';
+import { Range, Checkbox, OldSelect } from '@ohif/ui';
+
+import './slab-thickness-toolbar-button.styl';
+
+const SLIDER = {
+  MIN: 0.1,
+  MAX: 1000,
+  STEP: 0.1,
+};
+
+const ToolbarLabel = props => {
+  const { label } = props;
+  return <div className="toolbar-button-label">{label}</div>;
+};
+
+ToolbarLabel.propTypes = {
+  label: PropTypes.string.isRequired,
+};
+
+const ToolbarSlider = props => {
+  const { value, min, max, onChange } = props;
+  return (
+    <div className="toolbar-slider-container">
+      <label htmlFor="toolbar-slider">{value}mm</label>
+      <Range
+        value={value}
+        min={min}
+        max={max}
+        step={SLIDER.STEP}
+        onChange={onChange}
+        id="toolbar-slider"
+      />
+    </div>
+  );
+};
+
+ToolbarSlider.propTypes = {
+  value: PropTypes.number.isRequired,
+  min: PropTypes.number.isRequired,
+  max: PropTypes.number.isRequired,
+  onChange: PropTypes.func.isRequired,
+};
+
+const _getSelectOptions = button => {
+  return button.operationButtons.map(button => {
+    return {
+      key: button.label,
+      value: button.id,
+    };
+  });
+};
+
+const _getClassNames = (isActive, className) => {
+  return classnames('toolbar-button', 'slab-thickness', className, {
+    active: isActive,
+  });
+};
+
+const _applySlabThickness = (
+  value,
+  modeChecked,
+  toolbarClickCallback,
+  button
+) => {
+  if (!modeChecked || !toolbarClickCallback) {
+    return;
+  }
+
+  const { actionButton } = button;
+
+  const generateOperation = (operation, value) => {
+    // Combine slider value into slider operation
+    const generatedOperation = { ...operation };
+    generatedOperation.commandOptions = {
+      ...operation.commandOptions,
+      slabThickness: value,
+    };
+
+    return generatedOperation;
+  };
+
+  const operation = generateOperation(actionButton, value);
+  toolbarClickCallback(operation, event);
+};
+
+const _applyModeOperation = (
+  operation,
+  modeChecked,
+  toolbarClickCallback,
+  button
+) => {
+  // in case modeChecked has not being triggered by user yet
+  if (typeof modeChecked !== 'boolean') {
+    return;
+  }
+
+  const { deactivateButton } = button;
+
+  const _operation = modeChecked ? operation : deactivateButton;
+  if (toolbarClickCallback && _operation) {
+    toolbarClickCallback(_operation);
+  }
+};
+
+const _getInitialState = currentSelectedOption => {
+  return {
+    value: SLIDER.MIN,
+    sliderMin: SLIDER.MIN,
+    sliderMax: SLIDER.MAX,
+    modeChecked: undefined,
+    operation: currentSelectedOption,
+  };
+};
+
+const INITIAL_OPTION_INDEX = 0;
+const _getInitialtSelectedOption = (button = {}) => {
+  return (
+    button.operationButtons && button.operationButtons[INITIAL_OPTION_INDEX]
+  );
+};
+
+function SlabThicknessToolbarComponent({
+  parentContext,
+  toolbarClickCallback,
+  button,
+  activeButtons,
+  isActive,
+  className,
+}) {
+  const currentSelectedOption = _getInitialtSelectedOption(button);
+  const [state, setState] = useState(_getInitialState(currentSelectedOption));
+  const { label, operationButtons } = button;
+  const _className = _getClassNames(isActive, className);
+  const selectOptions = _getSelectOptions(button);
+  function onChangeSelect(selectedValue) {
+    // find select value
+    const operation = operationButtons.find(
+      button => button.id === selectedValue
+    );
+
+    if (operation === state.operation) {
+      return;
+    }
+
+    setState({ ...state, operation });
+  }
+
+  function onChangeCheckbox(checked) {
+    setState({ ...state, modeChecked: checked });
+  }
+
+  function onChangeSlider(event) {
+    const value = Number(event.target.value);
+
+    if (value !== state.value) {
+      setState({ ...state, value, modeChecked: true });
+    }
+  }
+
+  useEffect(() => {
+    _applyModeOperation(
+      state.operation,
+      state.modeChecked,
+      toolbarClickCallback,
+      button
+    );
+  }, [state.modeChecked, state.operation]);
+
+  useEffect(() => {
+    _applySlabThickness(
+      state.value,
+      state.modeChecked,
+      toolbarClickCallback,
+      button
+    );
+  }, [state.operation, state.modeChecked, state.value]);
+
+  return (
+    <div className={_className}>
+      <div className="container">
+        <ToolbarSlider
+          value={state.value}
+          min={state.sliderMin}
+          max={state.sliderMax}
+          onChange={onChangeSlider}
+        />
+        <ToolbarLabel key="toolbar-label" label={label} />
+      </div>
+      <div className="controller">
+        <Checkbox
+          label="mode"
+          checked={state.modeChecked}
+          onChange={onChangeCheckbox}
+        ></Checkbox>
+        <OldSelect
+          key="toolbar-select"
+          options={selectOptions}
+          value={selectOptions[INITIAL_OPTION_INDEX].value}
+          onChange={onChangeSelect}
+        ></OldSelect>
+      </div>
+    </div>
+  );
+}
+
+SlabThicknessToolbarComponent.propTypes = {
+  parentContext: PropTypes.object.isRequired,
+  toolbarClickCallback: PropTypes.func.isRequired,
+  button: PropTypes.object.isRequired,
+  activeButtons: PropTypes.array.isRequired,
+  isActive: PropTypes.bool,
+  className: PropTypes.string,
+};
+
+export default SlabThicknessToolbarComponent;

extensions/vtk/src/toolbarComponents/slab-thickness-toolbar-button.styl

@@ -0,0 +1,55 @@
+.slab-thickness
+  display: flex;
+  flex-direction: row;
+  align-items: flex-end;
+  height: 60px;
+  margin-top: -12px;
+  &:hover
+    color: var(--default-color);
+  .container
+    padding-right: 10px;
+    height: inherit;
+    display: flex;
+    flex-direction: column;
+    justify-content: space-between;
+    .toolbar-slider-container
+      width: 80px;
+      margin: 0px 2px 2px 2px;
+      font-size: 12px;
+      &:hover
+        color: var(--hover-color);
+      input
+        height: 20px;
+        padding-top: 6px;
+        &::-moz-range-thumb
+          height: 16px;
+          margin-top: -7px;
+        &::-webkit-slider-thumb
+          height: 16px;
+          margin-top: -7px;
+  .controller
+    width: 62px;
+    .ohif-check-container
+      margin-bottom: 5px;
+      padding-left: 18px;
+      .ohif-check-label
+        text-transform: capitalize;
+        &:hover
+          color: var(--hover-color);
+        .ohif-checkbox
+          border-radius: 3px;
+          background-color: white;
+          width: 12px;
+          height: 12px;
+          top: 22%;
+          &.ohif-checked:after
+            background-color: var(--active-color);
+            top: 17%;
+            left: 17%;
+    .select-ohif
+      color: var(--default-color);
+      border-color: var(--default-color);
+      background-color: black;
+      background-image: url('data:image/svg+xml;charset=US-ASCII,%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%22292.4%22%20height%3D%22292.4%22%3E%3Cpath%20fill%3D%22%23007CB2%22%20d%3D%22M287%2069.4a17.6%2017.6%200%200%200-13-5.4H18.4c-5%200-9.3%201.8-12.9%205.4A17.6%2017.6%200%200%200%200%2082.2c0%205%201.8%209.3%205.4%2012.9l128%20127.9c3.6%203.6%207.8%205.4%2012.8%205.4s9.2-1.8%2012.8-5.4L287%2095c3.5-3.5%205.4-7.8%205.4-12.8%200-5-1.9-9.2-5.5-12.8z%22%2F%3E%3C%2Fsvg%3E');
+      &:hover
+        color: var(--hover-color);

extensions/vtk/src/toolbarModule.js

@@ -1,3 +1,5 @@
+import SlabThicknessToolbarComponent from './toolbarComponents/SlabThicknessToolbarComponent';
+
 const TOOLBAR_BUTTON_TYPES = {
   COMMAND: 'command',
   SET_TOOL_ACTIVE: 'setToolActive',
@@ -31,6 +33,7 @@ const definitions = [
     commandName: 'enableRotateTool',
     commandOptions: {},
   },
+  /*
   {
     id: 'setBlendModeToComposite',
     label: 'Disable MIP',
@@ -68,6 +71,50 @@ const definitions = [
     commandName: 'decreaseSlabThickness',
     commandOptions: {},
   },
+  */
+  {
+    id: 'changeSlabThickness',
+    label: 'Slab Thickness',
+    icon: 'soft-tissue',
+    CustomComponent: SlabThicknessToolbarComponent,
+    commandName: 'setSlabThickness',
+    actionButton: {
+      id: 'setSlabThickness',
+      label: 'slider',
+      type: TOOLBAR_BUTTON_TYPES.COMMAND,
+      commandName: 'setSlabThickness',
+      commandOptions: {},
+    },
+    deactivateButton: {
+      id: 'setBlendModeToComposite',
+      type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
+      commandName: 'setBlendModeToComposite',
+      commandOptions: {},
+    },
+    operationButtons: [
+      {
+        id: 'setBlendModeToMaximumIntensity',
+        label: 'MIP',
+        type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
+        commandName: 'setBlendModeToMaximumIntensity',
+        commandOptions: {},
+      },
+      {
+        id: 'setBlendModeToMinimumIntensity',
+        label: 'MinIP',
+        type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
+        commandName: 'setBlendModeToMinimumIntensity',
+        commandOptions: {},
+      },
+      {
+        id: 'setBlendModeToAverageIntensity',
+        label: 'AvgIP',
+        type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
+        commandName: 'setBlendModeToAverageIntensity',
+        commandOptions: {},
+      },
+    ],
+  },
 ];
 
 export default {

extensions/vtk/src/utils/setMPRLayout.js

@@ -1,60 +1,56 @@
 import setLayoutAndViewportData from './setLayoutAndViewportData.js';
-import setSingleLayoutData from './setSingleLayoutData.js';
 
-export default function setMPRLayout(displaySet) {
+export default function setMPRLayout(
+  displaySet,
+  viewportPropsArray,
+  numRows = 1,
+  numColumns = 1
+) {
   return new Promise((resolve, reject) => {
-    let viewports = [];
-    const rows = 1;
-    const columns = 3;
-    const numViewports = rows * columns;
-    const viewportSpecificData = {};
-    for (let i = 0; i < numViewports; i++) {
-      viewports.push({
-        height: `${100 / rows}%`,
-        width: `${100 / columns}%`,
-      });
+    const viewports = [];
+    const numViewports = numRows * numColumns;
 
+    if (viewportPropsArray && viewportPropsArray.length !== numViewports) {
+      reject(
+        new Error(
+          'viewportProps is supplied but its length is not equal to numViewports'
+        )
+      );
+    }
+
+    const viewportSpecificData = {};
+
+    for (let i = 0; i < numViewports; i++) {
+      viewports.push({});
       viewportSpecificData[i] = displaySet;
       viewportSpecificData[i].plugin = 'vtk';
     }
-    const layout = {
-      viewports,
-    };
-
-    const viewportIndices = [0, 1, 2];
-    let updatedViewports = layout.viewports;
 
     const apis = [];
-    viewportIndices.forEach(viewportIndex => {
-      apis[viewportIndex] = null;
-      /*const currentData = layout.viewports[viewportIndex];
-      if (currentData && currentData.plugin === 'vtk') {
-        reject(new Error('Should not have reached this point??'));
-      }*/
-
-      const data = {
-        // plugin: 'vtk',
+    viewports.forEach((viewport, index) => {
+      apis[index] = null;
+      const viewportProps = viewportPropsArray[index];
+      viewports[index] = Object.assign({}, viewports[index], {
         vtk: {
           mode: 'mpr', // TODO: not used
           afterCreation: api => {
-            apis[viewportIndex] = api;
+            apis[index] = api;
 
             if (apis.every(a => !!a)) {
               resolve(apis);
             }
           },
+          ...viewportProps,
         },
-      };
-
-      updatedViewports = setSingleLayoutData(
-        updatedViewports,
-        viewportIndex,
-        data
-      );
+      });
     });
 
     setLayoutAndViewportData(
-      { viewports: updatedViewports },
+      {
+        numRows,
+        numColumns,
+        viewports,
+      },
       viewportSpecificData
     );
   });

extensions/vtk/src/utils/setSingleLayoutData.js

@@ -1,12 +0,0 @@
-export default function setSingleLayoutData(
-  originalArray,
-  viewportIndex,
-  data
-) {
-  const viewports = originalArray.slice();
-  const layoutData = Object.assign({}, viewports[viewportIndex], data);
-
-  viewports[viewportIndex] = layoutData;
-
-  return viewports;
-}

extensions/vtk/src/utils/setViewportToVTK.js

@@ -1,9 +1,10 @@
 import setLayoutAndViewportData from './setLayoutAndViewportData.js';
-import setSingleLayoutData from './setSingleLayoutData.js';
 
 export default function setViewportToVTK(
   displaySet,
   viewportIndex,
+  numRows,
+  numColumns,
   layout,
   viewportSpecificData
 ) {
@@ -13,7 +14,9 @@ export default function setViewportToVTK(
       reject(new Error('Should not have reached this point??'));
     }*/
 
-    const data = {
+    const viewports = layout.viewports.slice();
+
+    viewports[viewportIndex] = Object.assign({}, viewports[viewportIndex], {
       // plugin: 'vtk',
       vtk: {
         mode: 'mpr', // TODO: not used
@@ -21,18 +24,16 @@ export default function setViewportToVTK(
           resolve(api);
         },
       },
-    };
-
-    const updatedViewports = setSingleLayoutData(
-      layout.viewports,
-      viewportIndex,
-      data
-    );
+    });
 
     const updatedViewportData = viewportSpecificData;
 
     setLayoutAndViewportData(
-      { viewports: updatedViewports },
+      {
+        numRows,
+        numColumns,
+        viewports,
+      },
       updatedViewportData
     );
   });

netlify.toml

@@ -38,7 +38,8 @@
 [context.deploy-preview]
   base = ""
   publish = ".netlify/www/"
-  command = "yarn config set workspaces-experimental true && chmod +x .netlify/build-deploy-preview.sh && .netlify/build-deploy-preview.sh"
+  command = "chmod +x .netlify/build-deploy-preview.sh && .netlify/build-deploy-preview.sh"
+  # command = "yarn config set workspaces-experimental true && chmod +x .netlify/build-deploy-preview.sh && .netlify/build-deploy-preview.sh"
 
 [[headers]]
   # Define which paths this specific [[headers]] block will cover.

package.json

@@ -13,7 +13,6 @@
   "scripts": {
     "cm": "npx git-cz",
     "build": "lerna run build:viewer --stream",
-    "build:e2e": "lerna run build:viewer:e2e --stream",
     "build:ci": "lerna run build:viewer:ci --stream",
     "build:demo": "lerna run build:viewer:demo --stream",
     "build:package": "lerna run build:viewer:package --stream",
@@ -22,11 +21,14 @@
     "dev:project": ".scripts/dev.sh",
     "dev:orthanc": "lerna run dev:orthanc --stream",
     "orthanc:up": "docker-compose -f .docker/Nginx-Orthanc/docker-compose.yml up",
+    "start": "yarn run dev",
     "test": "yarn run test:unit",
     "test:unit": "jest --collectCoverage",
     "test:unit:ci": "lerna run test:unit:ci --parallel --stream",
     "test:e2e": "lerna run test:e2e --stream",
+    "test:e2e:ci": "lerna run test:e2e:ci --stream",
     "test:e2e:dist": "lerna run test:e2e:dist --stream",
+    "test:e2e:serve": "lerna run test:e2e:serve --stream",
     "see-changed": "lerna changed",
     "docs:publish": "chmod +x ./build-and-publish-docs.sh && ./build-and-publish-docs.sh",
     "release": "yarn run lerna:version && yarn run lerna:publish",
@@ -48,6 +50,7 @@
     "@babel/plugin-transform-runtime": "^7.5.0",
     "@babel/preset-env": "^7.5.0",
     "@babel/preset-react": "^7.0.0",
+    "@percy/cypress": "^2.2.0",
     "babel-eslint": "9.x",
     "babel-loader": "^8.0.6",
     "babel-plugin-inline-react-svg": "1.1.0",
@@ -56,16 +59,20 @@
     "copy-webpack-plugin": "^5.0.3",
     "cross-env": "^5.2.0",
     "css-loader": "^3.2.0",
+    "dotenv": "^8.1.0",
     "eslint": "5.16.0",
+    "eslint-config-prettier": "^6.4.0",
     "eslint-config-react-app": "^4.0.1",
     "eslint-plugin-flowtype": "2.x",
     "eslint-plugin-import": "2.x",
     "eslint-plugin-jsx-a11y": "6.x",
     "eslint-plugin-node": "^9.1.0",
+    "eslint-plugin-prettier": "^3.1.1",
     "eslint-plugin-promise": "^4.2.1",
     "eslint-plugin-react": "7.x",
     "eslint-plugin-react-hooks": "1.5.0",
     "extract-css-chunks-webpack-plugin": "^4.5.4",
+    "favicons-webpack-plugin": "^1.0.2",
     "html-webpack-plugin": "^3.2.0",
     "husky": "^3.0.0",
     "jest": "^24.8.0",
@@ -90,15 +97,26 @@
     "stylelint-config-recommended": "^2.2.0",
     "stylus": "^0.54.5",
     "stylus-loader": "^3.0.2",
-    "terser-webpack-plugin": "^1.4.1",
+    "terser-webpack-plugin": "^2.1.0",
     "webpack": "^4.35.2",
     "webpack-cli": "^3.3.5",
     "webpack-dev-server": "^3.7.2",
     "webpack-hot-middleware": "^2.25.0",
     "webpack-merge": "^4.2.1",
-    "workbox-webpack-plugin": "^4.3.1",
+    "workbox-webpack-plugin": "^5.0.0-beta.1",
     "worker-loader": "^2.0.0"
   },
+  "husky": {
+    "hooks": {
+      "pre-commit": "lint-staged"
+    }
+  },
+  "lint-staged": {
+    "src/**/*.{js,json,css}": [
+      "prettier --write",
+      "git add"
+    ]
+  },
   "resolutions": {
     "**/@babel/runtime": "7.5.5"
   }

platform/core/CHANGELOG.md

@@ -3,6 +3,189 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.6.2](https://github.com/OHIF/Viewers/compare/@ohif/core@1.6.1...@ohif/core@1.6.2) (2019-11-05)
+
+
+### Bug Fixes
+
+* [#1075](https://github.com/OHIF/Viewers/issues/1075) Returning to the Study List before all series have finishe… ([#1090](https://github.com/OHIF/Viewers/issues/1090)) ([ecaf578](https://github.com/OHIF/Viewers/commit/ecaf578f92dc40294cec7ff9b272fb432dec4125))
+
+
+
+
+
+## [1.6.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.6.0...@ohif/core@1.6.1) (2019-10-31)
+
+
+### Bug Fixes
+
+* application crash if patientName is an object ([#1138](https://github.com/OHIF/Viewers/issues/1138)) ([64cf3b3](https://github.com/OHIF/Viewers/commit/64cf3b324da2383a927af1df2d46db2fca5318aa))
+
+
+
+
+
+# [1.6.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.5.2...@ohif/core@1.6.0) (2019-10-26)
+
+
+### Features
+
+* Snapshot Download Tool ([#840](https://github.com/OHIF/Viewers/issues/840)) ([450e098](https://github.com/OHIF/Viewers/commit/450e0981a5ba054fcfcb85eeaeb18371af9088f8))
+
+
+
+
+
+## [1.5.2](https://github.com/OHIF/Viewers/compare/@ohif/core@1.5.1...@ohif/core@1.5.2) (2019-10-25)
+
+
+### Bug Fixes
+
+* set SR in ActiveViewport by clicking thumb ([#1091](https://github.com/OHIF/Viewers/issues/1091)) ([986b7ae](https://github.com/OHIF/Viewers/commit/986b7ae2bf4f7d27f326e62f93285ce20eaf0a79))
+
+
+
+
+
+## [1.5.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.5.0...@ohif/core@1.5.1) (2019-10-25)
+
+
+### Bug Fixes
+
+* 🐛 Orthographic MPR fix ([#1092](https://github.com/OHIF/Viewers/issues/1092)) ([460e375](https://github.com/OHIF/Viewers/commit/460e375f0aa75d35f7a46b4d48e6cc706019956d))
+
+
+
+
+
+# [1.5.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.4.0...@ohif/core@1.5.0) (2019-10-25)
+
+
+### Features
+
+* 🎸 Allow routes to load Google Cloud DICOM Stores in the Study List ([#1069](https://github.com/OHIF/Viewers/issues/1069)) ([21b586b](https://github.com/OHIF/Viewers/commit/21b586b08f3dde6613859712a9e0577dece564db))
+
+
+
+
+
+# [1.4.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.3.2...@ohif/core@1.4.0) (2019-10-15)
+
+
+### Features
+
+* 🎸 Only allow reconstruction of datasets that make sense ([#1010](https://github.com/OHIF/Viewers/issues/1010)) ([2d75e01](https://github.com/OHIF/Viewers/commit/2d75e01)), closes [#561](https://github.com/OHIF/Viewers/issues/561)
+
+
+
+
+
+## [1.3.2](https://github.com/OHIF/Viewers/compare/@ohif/core@1.3.1...@ohif/core@1.3.2) (2019-10-14)
+
+
+### Bug Fixes
+
+* Return display sets in StudyMetadata._createDisplaySetsForSeries ([#1042](https://github.com/OHIF/Viewers/issues/1042)) ([fc01532](https://github.com/OHIF/Viewers/commit/fc01532))
+
+
+
+
+
+## [1.3.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.3.0...@ohif/core@1.3.1) (2019-10-11)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+# [1.3.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.2.0...@ohif/core@1.3.0) (2019-10-11)
+
+
+### Features
+
+* 🎸 Improve usability of Google Cloud adapter, including direct routes to studies ([#989](https://github.com/OHIF/Viewers/issues/989)) ([2bc361c](https://github.com/OHIF/Viewers/commit/2bc361c))
+
+
+
+
+
+# [1.2.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.1.0...@ohif/core@1.2.0) (2019-10-09)
+
+
+### Bug Fixes
+
+* OHIF-1002 Study lazy load should be true by default ([#1004](https://github.com/OHIF/Viewers/issues/1004)) ([66d8bc6](https://github.com/OHIF/Viewers/commit/66d8bc6))
+
+
+### Features
+
+* Allow a server requestOptions.auth to be a function that returns the Authorization header. ([#928](https://github.com/OHIF/Viewers/issues/928)) ([0064a4b](https://github.com/OHIF/Viewers/commit/0064a4b))
+
+
+
+
+
+# [1.1.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.0.2...@ohif/core@1.1.0) (2019-10-03)
+
+
+### Features
+
+* Use QIDO + WADO to load series metadata individually rather than the entire study metadata at once ([#953](https://github.com/OHIF/Viewers/issues/953)) ([9e10c2b](https://github.com/OHIF/Viewers/commit/9e10c2b))
+
+
+
+
+
+## [1.0.2](https://github.com/OHIF/Viewers/compare/@ohif/core@1.0.1...@ohif/core@1.0.2) (2019-10-02)
+
+
+### Bug Fixes
+
+* Temporarily sort SEG files to the end of the display set list as a workaround for several metadata issues ([#987](https://github.com/OHIF/Viewers/issues/987)) ([b3b4c10](https://github.com/OHIF/Viewers/commit/b3b4c10))
+
+
+
+
+
+## [1.0.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.0.0...@ohif/core@1.0.1) (2019-09-27)
+
+
+### Bug Fixes
+
+* Check for Value in 00081155 sequence (Few patient protocol images doesn't have this value) and removed a duplicate declaration ([#921](https://github.com/OHIF/Viewers/issues/921)) ([d0ec9cf](https://github.com/OHIF/Viewers/commit/d0ec9cf))
+
+
+
+
+
+# [1.0.0](https://github.com/OHIF/Viewers/compare/@ohif/core@0.50.10...@ohif/core@1.0.0) (2019-09-27)
+
+
+### Bug Fixes
+
+* 🐛 Add DicomLoaderService & FileLoaderService to fix SR, PDF, and SEG support in local file and WADO-RS-only use cases ([#862](https://github.com/OHIF/Viewers/issues/862)) ([e7e1a8a](https://github.com/OHIF/Viewers/commit/e7e1a8a)), closes [#838](https://github.com/OHIF/Viewers/issues/838)
+
+
+### BREAKING CHANGES
+
+* DICOM Seg
+
+
+
+
+
+## [0.50.10](https://github.com/OHIF/Viewers/compare/@ohif/core@0.50.9...@ohif/core@0.50.10) (2019-09-23)
+
+
+### Bug Fixes
+
+* Avoid using variable name "module" ([#942](https://github.com/OHIF/Viewers/issues/942)) ([72427fe](https://github.com/OHIF/Viewers/commit/72427fe)), closes [#940](https://github.com/OHIF/Viewers/issues/940)
+
+
+
+
+
 ## [0.50.9](https://github.com/OHIF/Viewers/compare/@ohif/core@0.50.8...@ohif/core@0.50.9) (2019-09-17)
 
 

platform/core/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/core",
-  "version": "0.50.9",
+  "version": "1.6.2",
   "description": "Generic business logic for web-based medical imaging applications",
   "author": "OHIF Core Team",
   "license": "MIT",

platform/core/src/DICOMWeb/getAuthorizationHeader.js

@@ -9,7 +9,7 @@ import user from '../user';
  * @export
  * @param {Object} [server={}]
  * @param {Object} [server.requestOptions]
- * @param {string} [server.requestOptions.auth]
+ * @param {string|function} [server.requestOptions.auth]
  * @returns {Object} { Authorization }
  */
 export default function getAuthorizationHeader({ requestOptions } = {}) {
@@ -19,8 +19,13 @@ export default function getAuthorizationHeader({ requestOptions } = {}) {
   const accessToken = user && user.getAccessToken && user.getAccessToken();
 
   if (requestOptions && requestOptions.auth) {
-    // HTTP Basic Auth (user:password)
-    headers.Authorization = `Basic ${btoa(requestOptions.auth)}`;
+    if (typeof requestOptions.auth === 'function') {
+      // Custom Auth Header
+      headers.Authorization = requestOptions.auth(requestOptions);
+    } else {
+      // HTTP Basic Auth (user:password)
+      headers.Authorization = `Basic ${btoa(requestOptions.auth)}`;
+    }
   } else if (accessToken) {
     headers.Authorization = `Bearer ${accessToken}`;
   }

platform/core/src/DICOMWeb/getAuthorizationHeader.test.js

@@ -7,10 +7,7 @@ describe('getAuthorizationHeader', () => {
   it('should return a HTTP Basic Auth when server contains requestOptions.auth', () => {
     const validServer = {
       requestOptions: {
-        auth: {
-          user: 'dummy_user',
-          password: 'dummy_password',
-        },
+        auth: 'dummy_user:dummy_password',
       },
     };
 
@@ -26,9 +23,7 @@ describe('getAuthorizationHeader', () => {
   it('should return a HTTP Basic Auth when server contains requestOptions.auth even though there is no password', () => {
     const validServerWithoutPassword = {
       requestOptions: {
-        auth: {
-          user: 'dummy_user',
-        },
+        auth: 'dummy_user',
       },
     };
 
@@ -43,22 +38,19 @@ describe('getAuthorizationHeader', () => {
     expect(authentication).toEqual(expectedAuthorizationHeader);
   });
 
-  it('should return a HTTP Basic Auth when server contains requestOptions.auth even though there is no username', () => {
-    const validServerWithoutPassword = {
+  it('should return a HTTP Basic Auth when server contains requestOptions.auth custom function', () => {
+    const validServerCustomAuth = {
       requestOptions: {
-        auth: {
-          user: 'dummy_user',
-        },
+        auth: options => `Basic ${options.token}`,
+        token: 'ZHVtbXlfdXNlcjpkdW1teV9wYXNzd29yZA==',
       },
     };
 
     const expectedAuthorizationHeader = {
-      Authorization: `Basic ${btoa(
-        validServerWithoutPassword.requestOptions.auth
-      )}`,
+      Authorization: `Basic ${validServerCustomAuth.requestOptions.token}`,
     };
 
-    const authentication = getAuthorizationHeader(validServerWithoutPassword);
+    const authentication = getAuthorizationHeader(validServerCustomAuth);
 
     expect(authentication).toEqual(expectedAuthorizationHeader);
   });

platform/core/src/DICOMWeb/getModalities.js

@@ -1,11 +1,14 @@
 export default function getModalities(modality, modalitiesInStudy) {
-  let modalities = {};
-  if (modality) {
-    modalities = modality;
+  if (!modality && !modalitiesInStudy) {
+    return {};
   }
 
+  const modalities = modality || {
+    vr: 'CS',
+    Value: [],
+  };
+
   if (modalitiesInStudy) {
-    // Find vr in modalities
     if (modalities.vr && modalities.vr === modalitiesInStudy.vr) {
       for (let i = 0; i < modalitiesInStudy.Value.length; i++) {
         const value = modalitiesInStudy.Value[i];
@@ -14,8 +17,9 @@ export default function getModalities(modality, modalitiesInStudy) {
         }
       }
     } else {
-      modalities = modalitiesInStudy;
+      return modalitiesInStudy;
     }
   }
+
   return modalities;
 }

platform/core/src/__mocks__/dicomweb-client.js

@@ -1,10 +1,12 @@
 // import { api } from 'dicomweb-client'
 
 const api = {
-  DICOMwebClient: jest.fn().mockImplementation(() => {
-    return {
-      retrieveStudyMetadata: jest.fn().mockResolvedValue([]),
-    };
+  DICOMwebClient: jest.fn().mockImplementation(function() {
+    this.retrieveStudyMetadata = jest.fn().mockResolvedValue([]);
+    this.retrieveSeriesMetadata = jest.fn(function(options) {
+      const { studyInstanceUID, seriesInstanceUID } = options;
+      return Promise.resolve([{ studyInstanceUID, seriesInstanceUID }]);
+    });
   }),
 };
 

platform/core/src/classes/README.md

@@ -1,167 +0,0 @@
-# Table of contents
-In this document, some important objects are described. In the files there are comments that can help better undestand their methods and properties.
-  - [ResizeViewportManager object](#the-resize-viewport-manager-object)
-  - [ImageSet object](#the-image-set-object)
-  - [Layout Manager](#the-layout-manager-object)
-  - [Type Safe Collections](#the-type-safe-collections)
-
-# The Resize Viewport Manager object
-This object has multiple functions to manage window resize event. It relocates Dialogs, resizes viewport elements and scrollbars and some other UI components such as Study and Series Quick Switch, when available.
-
-## Usage
-It's only necessary to bind **handleResize** function to the window resize event as follows. The **ohif:viewerbase** package needs to be imported by the referring code as well.
-```javascript
-import { Viewerbase } from 'meteor/ohif:viewerbase';
-
-const ResizeViewportManager = new Viewerbase.ResizeViewportManager();
-window.addEventListener('resize', ResizeViewportManager.getResizeHandler());
-```
-An example os its usage can be found in **ohif-viewerbase/client/components/viewer/viewerMain/viewerMain.js**.
-
-# The Image Set object
-An object that represents a list of images that are associated by any arbitrary criteria being thus content agnostic. Besides the main attributes (**images** and **uid**) it allows additional attributes to be appended to it (currently indiscriminately, but this should be changed).
-
-## Usage
-ImageSet constructor requires an array of SOP instances like in the example below. It's necessary to import **ohif:viewerbase**.
-
-```javascript
-import { Viewerbase } from 'meteor/ohif:viewerbase';
-
-const imageSet = new Viewerbase.ImageSet(sopInstances);
-
-imageSet.setAttributes({
-    displaySetInstanceUid: imageSet.uid,
-    seriesInstanceUid: seriesData.seriesInstanceUid,
-    seriesNumber: seriesData.seriesNumber,
-    seriesDescription: seriesData.seriesDescription,
-    numImageFrames: instances.length,
-    frameRate: instance.getRawValue('x00181063'),
-    modality: seriesData.modality,
-    isMultiFrame: isMultiFrame(instance)
-});
-
-// Sort instances by InstanceNumber (0020,0013)
-imageSet.sortBy((a, b) => {
-    return (parseInt(a.getRawValue('x00200013', 0)) || 0) - (parseInt(b.getRawValue('x00200013', 0)) || 0);
-});
-```
-Each SOP instance in this example is an instance of **OHIFInstanceMetadata** object, which is a specialization of **InstanceMetadata**. To read more about the **Metadata API** click [here](metadata/).
-
-# The Layout Manager object
-Objects of this class are responsible for creating, organizing and maintaining (manage) viewport rendering. It creates a grid, positioning viewports accordingly to it's configuration keeping all viewports data (in **viewportData** property) for easy access from other components. It support many layout configurations and some of them were fully tested: 1x1, 1x2, 1x3, 2x1, 2x2, 2x3, 3x1, 3x2, 3x3. Other configurations may work as well.
-Finally it provides some useful functions to move through viewports and zoom it.
-
-## Usage
-In order to use _LayoutManager_ the **ohif:viewerbase** package needs to be imported by the referring code and instantiated as follows. An example os its usage is in **ohif-viewerbase/client/components/viewer/viewerMain/viewerMain.js**.
-
-```javascript
-import { Viewerbase } from 'meteor/ohif:viewerbase';
-
-// Get an array of studies object. This function needs to be implemented, it does not exist.
-const studies = getArrayOfStudiesObjects();
-const parentElement = document.getElementById('layoutManagerTarget');
-const LayoutManager = new Viewerbase.LayoutManager(parentElement, studies);
-```
-
-The default configuration is 1x1, and to change it just set **layoutProps** and call **updateViewports** to update the layout as follows.
-
-```javascript
-import { Viewerbase } from 'meteor/ohif:viewerbase';
-
-// Get an array of studies object. This function needs to be implemented, it does not exist.
-const studies = getArrayOfStudiesObjects();
-const parentElement = document.getElementById('layoutManagerTarget');
-const LayoutManager = new LayoutManager(parentElement, studies);
-
-// Set the layout proprerties to 2x2 layout
-LayoutManager.layoutProps = {
-    rows: 2,
-    columns: 2
-};
-
-// It will render four viewports: two in each row.
-LayoutManager.updateViewports();
-```
-
-The layoutManagerTarget element will have a new class **layout-2-2** (to allow further styling) and it's inner content will a new div#imageViewerViewports that has four inner elements like the following (some elements and attributes were removed for example purpose):
-```html
-<div class="viewportContainer active" style="height:50%; width:50%;">
-    <div class="removable">
-        <div class="imageViewerViewport">
-            <canvas></canvas>
-        </div>
-        <div class="imageViewerViewportOverlay"></div>
-        <div class="imageViewerLoadingIndicator"></div>
-        <div class="imageViewerErrorLoadingIndicator"></div>
-        <div class="viewportOrientationMarkers"></div>
-    </div>
-</div>
-```
-
-Each of this _div.viewportContainer_ will have some classes to help CSS specific styling accordingly to the element's position in the grid: **top**, **middle** and **bottom**. This classes are added by **viewer/components/gridLayout/** component in ohif-viewerbase package.
-
-# The Type Safe Collections
-
-With the introduction of the new _Study Metadata API_ in which study metadata is represented by class hierarchies (using prototype-based inheritance), the usage of standard _Minimongo_ collections as a central client-side storage for this data became no longer an option. Standard _Mongo_ and _Minimongo_ collections internally _flatten_ data (in other words, data gets serialized) before storage hence no functions or prototype chains are preserved. In that scenario, when an object is restored (fetched), what is returned is actually a flattened copy of the original object with no functions or prototype (it's no longer an instance of it's original class). As an attempt to overcome this limitation a new type of collection was intruduced: the *TypeSafeCollection*.
-
-The `TypeSafeCollection` is a simple list-like collection which tries to implement an API _similar_ but not compatible with _Mongo_'s API. It supports basic features like search by attribute map and ID, retrieval by index, sorting of result sets, insertion, removal and reactive operations but, unlike _Mongo_'s API, it (still) lacks support to advanced functionality like complex search criterea or flexible sorting options.
-
-## Implementation
-
-The `TypeSafeCollection` is implemented on top of the _JavaScript_ `Array` object. Each element inserted in the collection is appended to the end of its internal array as a _key-value pair (KVP)_ object where the _key_ is a unique randomly generated ID string and the _value_ is the element itself. Once the object has been successfully stored, the generated ID (its ID) is returned to the client code and can later be used to access that specific element. At this point, an important difference to the _Minimongo_ API can be highlighted: a _TypeSafeCollection_ instance will never make any changes to the stored element (e.g., no "\_id" property will ever be assigned to the original object). Another relevant feature that is supported by this design decision is that _not only objects_ can be stored in this collections, but literally _anything_.
-
-Inside the codebase, the _value_ attribute of each _KVP_ entry in the collection is refered to as _the **payload** of the entry_ since it's what really matters to the user. Hence, this term will also be used here to refer to the _value that has been stored in the collection_. That being said, we can approach another important feature of these collections: A single _payload_ cannot be stored more than once in a given collection. When an attempt of inserting a _payload_ which is already present in the collection is detected, the insert operation will fail and `null` will be returned. In that regard, the collection behaves like `Set` object not permitting a payload to be stored more than once. Strict equality is used when comparing payloads, thus cloned objects are not considered the same. This feature adds an additional garantee that a given study/series/instance will not be listed more than once (it was designed as a replacement for central study collections which were always checked for duplicates).
-
-Please refer to the codebase for the full `TypeSafeCollection` API.
-
-## Usage
-
-In order to use the `TypeSafeCollection` class, the **ohif:viewerbase** package needs to be imported by the referring code and instantiated as follows:
-
-```javascript
-import { Viewerbase } from 'meteor/ohif:viewerbase'; // i.e., Viewerbase.TypeSafeCollection
-OR
-
-import 'meteor/ohif:viewerbase'; // i.e., OHIF.viewerbase.TypeSafeCollection
-// The later is preferred when the client code already makes use of the "OHIF" namespace making the second
-// "import" a garantee that the ".viewerbase" namespace has been properly loaded.
-```
-
-A few usage examples:
-
-```javascript
-
-const Users = new OHIF.viewerbase.TypeSafeCollection();
-
-[[ ... ]]
-
-// Insert a User object...
-let userId = Users.insert({
-    data: {
-        firstName: 'John',
-        lastName: 'Doe',
-        age: 45
-    },
-    getFullName() {
-        return `${this.data.firstName} ${this.data.lastName}`;
-    },
-    getAge() {
-        return this.data.age;
-    }
-});
-
-[[ ... ]]
-
-let theUserWeJustStored = Users.findById(userId); // ;-)
-
-[[ ... ]]
-
-// Retrieve a single user with "Doe" as `lastName`...
-let myUser = Users.findBy({ 'data.lastName': 'Doe' });
-// Or all users with "Doe" as `lastName`, sorted by `firstName` in ascending
-// order and using the `age` attribute to break ties in descending order...
-let myUsers = Users.findAllBy({ 'data.lastName': 'Doe' }, {
-    sort: [ [ 'data.firstName', 'asc' ], [ 'data.age', 'desc' ] ]
-});
-
-```

platform/core/src/classes/metadata/StudyMetadata.js

@@ -8,7 +8,9 @@ import { SeriesMetadata } from './SeriesMetadata';
 // - createStacks
 import { api } from 'dicomweb-client';
 // - createStacks
-import { isImage } from './../../utils/isImage';
+import { isImage } from '../../utils/isImage';
+import isDisplaySetReconstructable from '../../utils/isDisplaySetReconstructable';
+import isLowPriorityModality from '../../utils/isLowPriorityModality';
 
 export class StudyMetadata extends Metadata {
   constructor(data, uid) {
@@ -88,6 +90,101 @@ export class StudyMetadata extends Metadata {
     return this._displaySets.slice();
   }
 
+  /**
+   * Split a series metadata object into display sets
+   * @param {Array} sopClassHandlerModules List of SOP Class Modules
+   * @param {SeriesMetadata} series The series metadata object from which the display sets will be created
+   * @param {Array} [givenDisplaySets] An optional list to which the display sets will be appended
+   * @returns {Array} The list of display sets created for the given series object
+   */
+  _createDisplaySetsForSeries(
+    sopClassHandlerModules,
+    series,
+    givenDisplaySets
+  ) {
+    const study = this;
+    const displaySets = Array.isArray(givenDisplaySets) ? givenDisplaySets : [];
+    const anyInstances = series.getInstanceCount() > 0;
+
+    if (!anyInstances) {
+      return;
+    }
+
+    const sopClassUids = getSopClassUids(series);
+
+    if (sopClassHandlerModules && sopClassHandlerModules.length > 0) {
+      const displaySet = _getDisplaySetFromSopClassModule(
+        sopClassHandlerModules,
+        series,
+        study,
+        sopClassUids
+      );
+      if (displaySet) {
+        displaySet.sopClassModule = true;
+        displaySets.push(displaySet);
+        return displaySets;
+      }
+    }
+
+    // WE NEED A BETTER WAY TO NOTE THAT THIS IS THE DEFAULT BEHAVIOR FOR LOADING
+    // A DISPLAY SET IF THERE IS NO MATCHING SOP CLASS PLUGIN
+
+    // Search through the instances (InstanceMetadata object) of this series
+    // Split Multi-frame instances and Single-image modalities
+    // into their own specific display sets. Place the rest of each
+    // series into another display set.
+    const stackableInstances = [];
+    series.forEachInstance(instance => {
+      // All imaging modalities must have a valid value for sopClassUid (x00080016) or rows (x00280010)
+      if (
+        !isImage(instance.getRawValue('x00080016')) &&
+        !instance.getRawValue('x00280010')
+      ) {
+        return;
+      }
+
+      let displaySet;
+
+      if (isMultiFrame(instance)) {
+        displaySet = makeDisplaySet(series, [instance]);
+
+        displaySet.setAttributes({
+          sopClassUids,
+          isClip: true,
+          seriesInstanceUid: series.getSeriesInstanceUID(),
+          studyInstanceUid: study.getStudyInstanceUID(), // Include the study instance Uid for drag/drop purposes
+          numImageFrames: instance.getRawValue('x00280008'), // Override the default value of instances.length
+          instanceNumber: instance.getRawValue('x00200013'), // Include the instance number
+          acquisitionDatetime: instance.getRawValue('x0008002a'), // Include the acquisition datetime
+        });
+        displaySets.push(displaySet);
+      } else if (isSingleImageModality(instance.modality)) {
+        displaySet = makeDisplaySet(series, [instance]);
+        displaySet.setAttributes({
+          sopClassUids,
+          studyInstanceUid: study.getStudyInstanceUID(), // Include the study instance Uid
+          seriesInstanceUid: series.getSeriesInstanceUID(),
+          instanceNumber: instance.getRawValue('x00200013'), // Include the instance number
+          acquisitionDatetime: instance.getRawValue('x0008002a'), // Include the acquisition datetime
+        });
+        displaySets.push(displaySet);
+      } else {
+        stackableInstances.push(instance);
+      }
+    });
+
+    if (stackableInstances.length) {
+      const displaySet = makeDisplaySet(series, stackableInstances);
+      displaySet.setAttribute('studyInstanceUid', study.getStudyInstanceUID());
+      displaySet.setAttributes({
+        sopClassUids,
+      });
+      displaySets.push(displaySet);
+    }
+
+    return displaySets;
+  }
+
   /**
    * Creates a set of series to be placed in the Study Metadata
    * The series that appear in the Study Metadata must represent
@@ -101,103 +198,44 @@ export class StudyMetadata extends Metadata {
    * @returns {Array} An array of series to be placed in the Study Metadata
    */
   createDisplaySets(sopClassHandlerModules) {
-    const study = this;
     const displaySets = [];
-    const anyDisplaySets = study.getSeriesCount();
-    const anySopClassHandlerModules =
-      sopClassHandlerModules && sopClassHandlerModules.length > 0;
+    const anyDisplaySets = this.getSeriesCount();
 
     if (!anyDisplaySets) {
       return displaySets;
     }
 
     // Loop through the series (SeriesMetadata)
-    this.forEachSeries(series => {
-      const anyInstances = series.getInstanceCount() > 0;
-      if (!anyInstances) {
-        return;
-      }
-
-      const sopClassUids = getSopClassUids(series);
-
-      if (anySopClassHandlerModules) {
-        const displaySet = _getDisplaySetFromSopClassModule(
+    this.forEachSeries(
+      series =>
+        void this._createDisplaySetsForSeries(
           sopClassHandlerModules,
           series,
-          study,
-          sopClassUids
-        );
+          displaySets
+        )
+    );
 
-        if (displaySet) {
-          displaySets.push(displaySet);
+    return sortDisplaySetList(displaySets);
+  }
 
-          return;
-        }
-      }
+  sortDisplaySets() {
+    sortDisplaySetList(this._displaySets);
+  }
 
-      // WE NEED A BETTER WAY TO NOTE THAT THIS IS THE DEFAULT BEHAVIOR FOR LOADING
-      // A DISPLAY SET IF THERE IS NO MATCHING SOP CLASS PLUGIN
-
-      // Search through the instances (InstanceMetadata object) of this series
-      // Split Multi-frame instances and Single-image modalities
-      // into their own specific display sets. Place the rest of each
-      // series into another display set.
-      const stackableInstances = [];
-      series.forEachInstance(instance => {
-        // All imaging modalities must have a valid value for sopClassUid (x00080016) or rows (x00280010)
-        if (
-          !isImage(instance.getRawValue('x00080016')) &&
-          !instance.getRawValue('x00280010')
-        ) {
-          return;
-        }
-
-        let displaySet;
-
-        if (isMultiFrame(instance)) {
-          displaySet = makeDisplaySet(series, [instance]);
-          displaySet.setAttributes({
-            sopClassUids,
-            isClip: true,
-            seriesInstanceUid: series.getSeriesInstanceUID(),
-            studyInstanceUid: study.getStudyInstanceUID(), // Include the study instance Uid for drag/drop purposes
-            numImageFrames: instance.getRawValue('x00280008'), // Override the default value of instances.length
-            instanceNumber: instance.getRawValue('x00200013'), // Include the instance number
-            acquisitionDatetime: instance.getRawValue('x0008002a'), // Include the acquisition datetime
-          });
-          displaySets.push(displaySet);
-        } else if (isSingleImageModality(instance.modality)) {
-          displaySet = makeDisplaySet(series, [instance]);
-          displaySet.setAttributes({
-            sopClassUids,
-            studyInstanceUid: study.getStudyInstanceUID(), // Include the study instance Uid
-            seriesInstanceUid: series.getSeriesInstanceUID(),
-            instanceNumber: instance.getRawValue('x00200013'), // Include the instance number
-            acquisitionDatetime: instance.getRawValue('x0008002a'), // Include the acquisition datetime
-          });
-          displaySets.push(displaySet);
-        } else {
-          stackableInstances.push(instance);
-        }
-      });
-
-      if (stackableInstances.length) {
-        const displaySet = makeDisplaySet(series, stackableInstances);
-        displaySet.setAttribute(
-          'studyInstanceUid',
-          study.getStudyInstanceUID()
-        );
-        displaySet.setAttributes({
-          sopClassUids,
-        });
-        displaySets.push(displaySet);
-      }
-    });
-
-    // TODO
-    displaySets.sort(_sortBySeriesNumber);
-
-    return displaySets;
+  /**
+   * Method to append display sets from a given series to the internal list of display sets
+   * @param {Array} sopClassHandlerModules A list of SOP Class Handler Modules
+   * @param {SeriesMetadata} series The series metadata object from which the display sets will be created
+   * @returns {boolean} Returns true on success or false on failure (e.g., the series does not belong to this study)
+   */
+  createAndAddDisplaySetsForSeries(sopClassHandlerModules, series) {
+    if (this.containsSeries(series)) {
+      this.setDisplaySets(
+        this._createDisplaySetsForSeries(sopClassHandlerModules, series)
+      );
+      return true;
+    }
+    return false;
   }
 
   /**
@@ -205,7 +243,10 @@ export class StudyMetadata extends Metadata {
    * @param {Array} displaySets Array of display sets (ImageSet[])
    */
   setDisplaySets(displaySets) {
-    displaySets.forEach(displaySet => this.addDisplaySet(displaySet));
+    if (Array.isArray(displaySets) && displaySets.length > 0) {
+      displaySets.forEach(displaySet => this.addDisplaySet(displaySet));
+      this.sortDisplaySets();
+    }
   }
 
   /**
@@ -214,7 +255,7 @@ export class StudyMetadata extends Metadata {
    * @returns {boolean} True on success, false on failure.
    */
   addDisplaySet(displaySet) {
-    if (displaySet instanceof ImageSet) {
+    if (displaySet instanceof ImageSet || displaySet.sopClassModule) {
       this._displaySets.push(displaySet);
       return true;
     }
@@ -319,6 +360,12 @@ export class StudyMetadata extends Metadata {
     return found;
   }
 
+  containsSeries(series) {
+    return (
+      series instanceof SeriesMetadata && this._series.indexOf(series) >= 0
+    );
+  }
+
   /**
    * Retrieve the number of series within the current study.
    * @returns {number} The number of series in the current study.
@@ -575,6 +622,16 @@ const makeDisplaySet = (series, instances) => {
     imageSet.getImage(0).getRawValue('x00200013')
   );
 
+  const isReconstructable = isDisplaySetReconstructable(series, instances);
+
+  imageSet.isReconstructable = isReconstructable.value;
+
+  if (isReconstructable.missingFrames) {
+    // TODO -> This is currently unused, but may be used for reconstructing
+    // Volumes with gaps later on.
+    imageSet.missingFrames = isReconstructable.missingFrames;
+  }
+
   return imageSet;
 };
 
@@ -649,13 +706,51 @@ function _getDisplaySetFromSopClassModule(
 }
 
 /**
+ * Sort series primarily by modality (i.e., series with references to other
+ * series like SEG, KO or PR are grouped in the end of the list) and then by
+ * series number:
+ *
+ *  --------
+ * | CT #3  |
+ * | CT #4  |
+ * | CT #5  |
+ *  --------
+ * | SEG #1 |
+ * | SEG #2 |
+ *  --------
  *
  * @param {*} a - DisplaySet
  * @param {*} b - DisplaySet
  */
-function _sortBySeriesNumber(a, b) {
+
+function seriesSortingCriteria(a, b) {
+  const isLowPriorityA = isLowPriorityModality(a.modality);
+  const isLowPriorityB = isLowPriorityModality(b.modality);
+  if (!isLowPriorityA && isLowPriorityB) {
+    return -1;
+  }
+  if (isLowPriorityA && !isLowPriorityB) {
+    return 1;
+  }
+  return sortBySeriesNumber(a, b);
+}
+
+/**
+ * Sort series by series number. Series with low
+ * @param {*} a - DisplaySet
+ * @param {*} b - DisplaySet
+ */
+function sortBySeriesNumber(a, b) {
   const seriesNumberAIsGreaterOrUndefined =
     a.seriesNumber > b.seriesNumber || (!a.seriesNumber && b.seriesNumber);
 
   return seriesNumberAIsGreaterOrUndefined ? 1 : -1;
 }
+
+/**
+ * Sorts a list of display set objects
+ * @param {Array} list A list of display sets to be sorted
+ */
+function sortDisplaySetList(list) {
+  return list.sort(seriesSortingCriteria);
+}

platform/core/src/hanging-protocols/ProtocolEngine.js

@@ -504,12 +504,12 @@ export default class ProtocolEngine {
   /**
    * Sets the current layout
    *
-   * @param rows
-   * @param columns
+   * @param {number} numRows
+   * @param {number} numColumns
    */
-  setLayout(rows, columns) {
-    if (rows < 1 && columns < 1) {
-      log.error(`Invalid layout ${rows} x ${columns}`);
+  setLayout(numRows, numColumns) {
+    if (numRows < 1 && numColumns < 1) {
+      log.error(`Invalid layout ${numRows} x ${numColumns}`);
       return;
     }
 
@@ -519,16 +519,13 @@ export default class ProtocolEngine {
     }
 
     let viewports = [];
-    const numViewports = rows * columns;
+    const numViewports = numRows * numColumns;
 
     for (let i = 0; i < numViewports; i++) {
-      viewports.push({
-        height: `${100 / rows}%`,
-        width: `${100 / columns}%`,
-      });
+      viewports.push({});
     }
 
-    this.options.setLayout({ viewports });
+    this.options.setLayout({ numRows, numColumns, viewports });
   }
 
   /**
@@ -634,14 +631,10 @@ export default class ProtocolEngine {
         //console.log('renderedCallback for ' + element.id);
         customSettings.forEach(customSetting => {
           log.trace(
-            `ProtocolEngine::currentViewportData.renderedCallback Applying custom setting: ${
-              customSetting.id
-            }`
+            `ProtocolEngine::currentViewportData.renderedCallback Applying custom setting: ${customSetting.id}`
           );
           log.trace(
-            `ProtocolEngine::currentViewportData.renderedCallback with value: ${
-              customSetting.value
-            }`
+            `ProtocolEngine::currentViewportData.renderedCallback with value: ${customSetting.value}`
           );
 
           const setting = CustomViewportSettings[customSetting.id];

platform/core/src/redux/actions.js

@@ -26,9 +26,34 @@ export const setViewportActive = viewportIndex => ({
   viewportIndex,
 });
 
-export const setLayout = layout => ({
+/**
+ * @param {object} layout
+ * @param {number} layout.numRows
+ * @param {number} layout.numColumns
+ * @param {array} layout.viewports
+ */
+export const setLayout = ({ numRows, numColumns, viewports }) => ({
   type: SET_VIEWPORT_LAYOUT,
-  layout,
+  numRows,
+  numColumns,
+  viewports,
+});
+
+/**
+ * @param {object} layout
+ * @param {number} layout.numRows
+ * @param {number} layout.numColumns
+ * @param {array} layout.viewports
+ */
+export const setViewportLayoutAndData = (
+  { numRows, numColumns, viewports },
+  viewportSpecificData
+) => ({
+  type: SET_VIEWPORT_LAYOUT_AND_DATA,
+  numRows,
+  numColumns,
+  viewports,
+  viewportSpecificData,
 });
 
 export const clearViewportSpecificData = viewportIndex => ({
@@ -87,12 +112,6 @@ export const setServers = servers => ({
   servers,
 });
 
-export const setViewportLayoutAndData = (layout, viewportSpecificData) => ({
-  type: SET_VIEWPORT_LAYOUT_AND_DATA,
-  layout,
-  viewportSpecificData,
-});
-
 const actions = {
   // VIEWPORT
   setViewportActive,

platform/core/src/redux/actions.test.js

@@ -94,19 +94,20 @@ describe('actions', () => {
     });
 
     it('should create an action to set the viewport layout', () => {
-      const layout = {
-        viewports: [
-          {
-            height: '100%',
-            width: '100%',
-          },
-        ],
-      };
+      const numRows = 1;
+      const numColumns = 2;
+      const viewports = [{ plugin: 'vtk' }, { plugin: 'vtk' }];
+
       const expectedAction = {
         type: types.SET_VIEWPORT_LAYOUT,
-        layout,
+        numRows,
+        numColumns,
+        viewports,
       };
-      expect(actions.setLayout(layout)).toEqual(expectedAction);
+
+      expect(actions.setLayout({ numRows, numColumns, viewports })).toEqual(
+        expectedAction
+      );
     });
   });
 });

platform/core/src/redux/index.js

@@ -1,11 +1,13 @@
 import actions from './actions.js';
 import reducers from './reducers';
 import localStorage from './localStorage.js';
+import sessionStorage from './sessionStorage.js';
 
 const redux = {
   reducers,
   actions,
   localStorage,
+  sessionStorage,
 };
 
 export default redux;

platform/core/src/redux/index.test.js

@@ -2,7 +2,7 @@ import redux from './index.js';
 
 describe('redux exports', () => {
   test('have not changed', () => {
-    const expectedExports = ['actions', 'reducers', 'localStorage'].sort();
+    const expectedExports = ['actions', 'reducers', 'localStorage', 'sessionStorage'].sort();
 
     const exports = Object.keys(redux).sort();
 

platform/core/src/redux/localStorage.js

@@ -1,6 +1,8 @@
+const LocalStorageApi = window.localStorage;
+const localStorageKey = 'state';
 export const loadState = () => {
   try {
-    const serializedState = window.localStorage.getItem('state');
+    const serializedState = LocalStorageApi.getItem(localStorageKey);
     if (!serializedState) {
       return undefined;
     }
@@ -14,7 +16,7 @@ export const loadState = () => {
 export const saveState = state => {
   try {
     const serializedState = JSON.stringify(state);
-    localStorage.setItem('state', serializedState);
+    LocalStorageApi.setItem(localStorageKey, serializedState);
   } catch (e) {}
 };
 

platform/core/src/redux/reducers/viewports.js

@@ -12,13 +12,13 @@ import cloneDeep from 'lodash.clonedeep';
 import merge from 'lodash.merge';
 
 const defaultState = {
+  numRows: 1,
+  numColumns: 1,
   activeViewportIndex: 0,
   layout: {
     viewports: [
       {
         // plugin: 'cornerstone',
-        height: '100%',
-        width: '100%',
       },
     ],
   },
@@ -34,21 +34,34 @@ const defaultState = {
  * @param {Object} [action.viewportSpecificData]
  */
 const viewports = (state = defaultState, action) => {
-  let currentData;
   let viewportSpecificData;
   let useActiveViewport = false;
   switch (action.type) {
-    case SET_VIEWPORT_LAYOUT_AND_DATA:
-      return Object.assign({}, state, {
-        viewportSpecificData: action.viewportSpecificData,
-        layout: action.layout,
-      });
     case SET_VIEWPORT_ACTIVE:
       return Object.assign({}, state, {
         activeViewportIndex: action.viewportIndex,
       });
-    case SET_VIEWPORT_LAYOUT:
-      return Object.assign({}, state, { layout: action.layout });
+    case SET_VIEWPORT_LAYOUT: {
+      const { numRows, numColumns, viewports } = action;
+      const layout = {
+        viewports: [...viewports],
+      };
+
+      return Object.assign({}, state, { numRows, numColumns, layout });
+    }
+    case SET_VIEWPORT_LAYOUT_AND_DATA: {
+      const { numRows, numColumns, viewports, viewportSpecificData } = action;
+      const layout = {
+        viewports: [...viewports],
+      };
+
+      return Object.assign({}, state, {
+        numRows,
+        numColumns,
+        layout,
+        viewportSpecificData: cloneDeep(viewportSpecificData),
+      });
+    }
     case SET_VIEWPORT: {
       const layout = cloneDeep(state.layout);
       const hasPlugin = action.data && action.data.plugin;
@@ -71,14 +84,24 @@ const viewports = (state = defaultState, action) => {
     // Allow fall-through
     // eslint-disable-next-line
     case SET_SPECIFIC_DATA: {
+      const layout = cloneDeep(state.layout);
+      const hasPlugin = action.data && action.data.plugin;
       const viewportIndex = useActiveViewport
         ? state.activeViewportIndex
         : action.viewportIndex;
-      currentData = cloneDeep(state.viewportSpecificData[viewportIndex]) || {};
-      viewportSpecificData = cloneDeep(state.viewportSpecificData);
-      viewportSpecificData[viewportIndex] = merge({}, currentData, action.data);
+      const { dom } = state.viewportSpecificData[viewportIndex];
 
-      return Object.assign({}, state, { viewportSpecificData });
+      viewportSpecificData = cloneDeep(state.viewportSpecificData);
+      viewportSpecificData[viewportIndex] = {
+        dom,
+        ...action.data,
+      };
+
+      if (hasPlugin) {
+        layout.viewports[viewportIndex].plugin = action.data.plugin;
+      }
+
+      return Object.assign({}, state, { layout, viewportSpecificData });
     }
     case CLEAR_VIEWPORT:
       viewportSpecificData = cloneDeep(state.viewportSpecificData);

platform/core/src/redux/reducers/viewports.test.js

@@ -6,13 +6,10 @@ describe('viewports reducer', () => {
   it('should return the initial state', () => {
     expect(reducer(undefined, {})).toEqual({
       activeViewportIndex: 0,
+      numRows: 1,
+      numColumns: 1,
       layout: {
-        viewports: [
-          {
-            height: '100%',
-            width: '100%',
-          },
-        ],
+        viewports: [{}],
       },
       viewportSpecificData: {},
     });
@@ -34,23 +31,25 @@ describe('viewports reducer', () => {
   it('should handle SET_VIEWPORT_LAYOUT', () => {
     const setViewportLayoutAction = {
       type: types.SET_VIEWPORT_LAYOUT,
-      layout: {
-        viewports: [
-          {
-            height: '100%',
-            width: '50%',
-          },
-          {
-            height: '100%',
-            width: '50%',
-          },
-        ],
-      },
+      numRows: 1,
+      numColumns: 2,
+      viewports: [
+        {
+          plugin: 'cornerstone',
+        },
+        {
+          plugin: 'vtk',
+        },
+      ],
     };
 
     const updatedState = reducer({}, setViewportLayoutAction);
 
-    expect(updatedState.layout).toEqual(setViewportLayoutAction.layout);
+    expect(updatedState.numRows).toEqual(setViewportLayoutAction.numRows);
+    expect(updatedState.numColumns).toEqual(setViewportLayoutAction.numColumns);
+    expect(updatedState.layout.viewports).toEqual(
+      setViewportLayoutAction.viewports
+    );
   });
 
   // If there were previous keys, this would have

platform/core/src/redux/sessionStorage.js

@@ -0,0 +1,28 @@
+const SessionStorageApi = window.sessionStorage;
+const sessionStorageKey = 'state';
+export const loadState = () => {
+  try {
+    const serializedState = SessionStorageApi.getItem(sessionStorageKey);
+    if (!serializedState) {
+      return undefined;
+    }
+
+    return JSON.parse(serializedState);
+  } catch (e) {
+    return undefined;
+  }
+};
+
+export const saveState = state => {
+  try {
+    const serializedState = JSON.stringify(state);
+    SessionStorageApi.setItem(sessionStorageKey, serializedState);
+  } catch (e) {}
+};
+
+const sessionStorage = {
+  saveState,
+  loadState,
+};
+
+export default sessionStorage;

platform/core/src/studies/retrieveStudyMetadata.js

@@ -1,6 +1,6 @@
 import RetrieveMetadata from './services/wado/retrieveMetadata.js';
 
-const module = 'RetrieveStudyMetadata';
+const moduleName = 'RetrieveStudyMetadata';
 // Cache for promises. Prevents unnecessary subsequent calls to the server
 const StudyMetaDataPromises = new Map();
 
@@ -17,11 +17,11 @@ export function retrieveStudyMetadata(server, studyInstanceUid) {
   // corresponding promise from the "StudyMetaDataPromises" map...
 
   if (!server) {
-    throw new Error(`${module}: Required 'server' parameter not provided.`);
+    throw new Error(`${moduleName}: Required 'server' parameter not provided.`);
   }
   if (!studyInstanceUid) {
     throw new Error(
-      `${module}: Required 'studyInstanceUid' parameter not provided.`
+      `${moduleName}: Required 'studyInstanceUid' parameter not provided.`
     );
   }
 

platform/core/src/studies/services/qido/studies.js

@@ -30,7 +30,7 @@ function dateToString(date) {
 function getQIDOQueryParams(filter, serverSupportsQIDOIncludeField) {
   const commaSeparatedFields = [
     '00081030', // Study Description
-    '00080060', //Modality
+    '00080060', // Modality
     // Add more fields here if you want them in the result
   ].join(',');
 

platform/core/src/studies/services/wado/retrieveMetadata.js

@@ -1,5 +1,8 @@
 import { api } from 'dicomweb-client';
 import DICOMWeb from '../../../DICOMWeb/';
+import isLowPriorityModality from '../../../utils/isLowPriorityModality';
+
+const INFO = Symbol('INFO');
 
 const WADOProxy = {
   convertURL: (url, server) => {
@@ -94,9 +97,7 @@ function buildInstanceWadoRsUri(
   seriesInstanceUid,
   sopInstanceUid
 ) {
-  return `${
-    server.wadoRoot
-  }/studies/${studyInstanceUid}/series/${seriesInstanceUid}/instances/${sopInstanceUid}`;
+  return `${server.wadoRoot}/studies/${studyInstanceUid}/series/${seriesInstanceUid}/instances/${sopInstanceUid}`;
 }
 
 function buildInstanceFrameWadoRsUri(
@@ -133,7 +134,8 @@ function getSourceImageInstanceUid(instance) {
   if (
     SourceImageSequence &&
     SourceImageSequence.Value &&
-    SourceImageSequence.Value.length
+    SourceImageSequence.Value.length &&
+    SourceImageSequence.Value[0]['00081155'].Value
   ) {
     return SourceImageSequence.Value[0]['00081155'].Value[0];
   }
@@ -165,9 +167,9 @@ function getPaletteColor(server, instance, tag, lutDescriptor) {
   };
 
   const arrayBufferToPaletteColorLUT = result => {
-    const arraybuffer = result[0]
-    const byteArray = new Uint8Array(arraybuffer)
-    const lut = []
+    const arraybuffer = result[0];
+    const byteArray = new Uint8Array(arraybuffer);
+    const lut = [];
 
     for (let i = 0; i < numLutEntries; i++) {
       if (bits === 16) {
@@ -270,200 +272,338 @@ function getRadiopharmaceuticalInfo(instance) {
   };
 }
 
+async function makeSOPInstance(server, study, instance) {
+  const { studyInstanceUid } = study;
+  const seriesInstanceUid = DICOMWeb.getString(instance['0020000E']);
+  let series = study.seriesMap[seriesInstanceUid];
+
+  if (!series) {
+    series = {
+      seriesInstanceUid,
+      seriesDescription: DICOMWeb.getString(instance['0008103E']),
+      modality: DICOMWeb.getString(instance['00080060']),
+      seriesNumber: DICOMWeb.getNumber(instance['00200011']),
+      seriesDate: DICOMWeb.getString(instance['00080021']),
+      seriesTime: DICOMWeb.getString(instance['00080031']),
+      instances: [],
+    };
+    study.seriesMap[seriesInstanceUid] = series;
+    study.seriesList.push(series);
+  }
+
+  const sopInstanceUid = DICOMWeb.getString(instance['00080018']);
+  const wadouri = buildInstanceWadoUrl(
+    server,
+    studyInstanceUid,
+    seriesInstanceUid,
+    sopInstanceUid
+  );
+  const baseWadoRsUri = buildInstanceWadoRsUri(
+    server,
+    studyInstanceUid,
+    seriesInstanceUid,
+    sopInstanceUid
+  );
+  const wadorsuri = buildInstanceFrameWadoRsUri(
+    server,
+    studyInstanceUid,
+    seriesInstanceUid,
+    sopInstanceUid
+  );
+
+  const sopInstance = {
+    imageType: DICOMWeb.getString(instance['00080008']),
+    sopClassUid: DICOMWeb.getString(instance['00080016']),
+    modality: DICOMWeb.getString(instance['00080060']),
+    sopInstanceUid,
+    instanceNumber: DICOMWeb.getNumber(instance['00200013']),
+    imagePositionPatient: DICOMWeb.getString(instance['00200032']),
+    imageOrientationPatient: DICOMWeb.getString(instance['00200037']),
+    frameOfReferenceUID: DICOMWeb.getString(instance['00200052']),
+    sliceLocation: DICOMWeb.getNumber(instance['00201041']),
+    samplesPerPixel: DICOMWeb.getNumber(instance['00280002']),
+    photometricInterpretation: DICOMWeb.getString(instance['00280004']),
+    planarConfiguration: DICOMWeb.getNumber(instance['00280006']),
+    rows: DICOMWeb.getNumber(instance['00280010']),
+    columns: DICOMWeb.getNumber(instance['00280011']),
+    pixelSpacing: DICOMWeb.getString(instance['00280030']),
+    pixelAspectRatio: DICOMWeb.getString(instance['00280034']),
+    bitsAllocated: DICOMWeb.getNumber(instance['00280100']),
+    bitsStored: DICOMWeb.getNumber(instance['00280101']),
+    highBit: DICOMWeb.getNumber(instance['00280102']),
+    pixelRepresentation: DICOMWeb.getNumber(instance['00280103']),
+    smallestPixelValue: DICOMWeb.getNumber(instance['00280106']),
+    largestPixelValue: DICOMWeb.getNumber(instance['00280107']),
+    windowCenter: DICOMWeb.getString(instance['00281050']),
+    windowWidth: DICOMWeb.getString(instance['00281051']),
+    rescaleIntercept: DICOMWeb.getNumber(instance['00281052']),
+    rescaleSlope: DICOMWeb.getNumber(instance['00281053']),
+    rescaleType: DICOMWeb.getNumber(instance['00281054']),
+    sourceImageInstanceUid: getSourceImageInstanceUid(instance),
+    laterality: DICOMWeb.getString(instance['00200062']),
+    viewPosition: DICOMWeb.getString(instance['00185101']),
+    acquisitionDateTime: DICOMWeb.getString(instance['0008002A']),
+    numberOfFrames: DICOMWeb.getNumber(instance['00280008']),
+    frameIncrementPointer: getFrameIncrementPointer(instance['00280009']),
+    frameTime: DICOMWeb.getNumber(instance['00181063']),
+    frameTimeVector: parseFloatArray(DICOMWeb.getString(instance['00181065'])),
+    sliceThickness: DICOMWeb.getNumber(instance['00180050']),
+    spacingBetweenSlices: DICOMWeb.getString(instance['00180088']),
+    lossyImageCompression: DICOMWeb.getString(instance['00282110']),
+    derivationDescription: DICOMWeb.getString(instance['00282111']),
+    lossyImageCompressionRatio: DICOMWeb.getString(instance['00282112']),
+    lossyImageCompressionMethod: DICOMWeb.getString(instance['00282114']),
+    echoNumber: DICOMWeb.getString(instance['00180086']),
+    contrastBolusAgent: DICOMWeb.getString(instance['00180010']),
+    radiopharmaceuticalInfo: getRadiopharmaceuticalInfo(instance),
+    baseWadoRsUri: baseWadoRsUri,
+    wadouri: WADOProxy.convertURL(wadouri, server),
+    wadorsuri: WADOProxy.convertURL(wadorsuri, server),
+    wadoRoot: server.wadoRoot,
+    imageRendering: server.imageRendering,
+    thumbnailRendering: server.thumbnailRendering,
+  };
+
+  // Get additional information if the instance uses "PALETTE COLOR" photometric interpretation
+  if (sopInstance.photometricInterpretation === 'PALETTE COLOR') {
+    const redPaletteColorLookupTableDescriptor = parseFloatArray(
+      DICOMWeb.getString(instance['00281101'])
+    );
+    const greenPaletteColorLookupTableDescriptor = parseFloatArray(
+      DICOMWeb.getString(instance['00281102'])
+    );
+    const bluePaletteColorLookupTableDescriptor = parseFloatArray(
+      DICOMWeb.getString(instance['00281103'])
+    );
+    const palettes = await getPaletteColors(
+      server,
+      instance,
+      redPaletteColorLookupTableDescriptor
+    );
+
+    if (palettes) {
+      if (palettes.uid) {
+        sopInstance.paletteColorLookupTableUID = palettes.uid;
+      }
+
+      sopInstance.redPaletteColorLookupTableData = palettes.red;
+      sopInstance.greenPaletteColorLookupTableData = palettes.green;
+      sopInstance.bluePaletteColorLookupTableData = palettes.blue;
+      sopInstance.redPaletteColorLookupTableDescriptor = redPaletteColorLookupTableDescriptor;
+      sopInstance.greenPaletteColorLookupTableDescriptor = greenPaletteColorLookupTableDescriptor;
+      sopInstance.bluePaletteColorLookupTableDescriptor = bluePaletteColorLookupTableDescriptor;
+    }
+  }
+
+  series.instances.push(sopInstance);
+  return sopInstance;
+}
+
+/**
+ * Create a plain JS object that describes a study (a study descriptor object)
+ * @param {Object} server Object with server configuration paramenters
+ * @param {Object} aSopInstance a SOP Instance from which study information will be added
+ */
+function createStudy(server, aSopInstance) {
+  // TODO: Pass a reference ID to the server instead of including the URLs here
+  return {
+    seriesList: [],
+    seriesMap: Object.create(null),
+    seriesLoader: null,
+    wadoUriRoot: server.wadoUriRoot,
+    wadoRoot: server.wadoRoot,
+    qidoRoot: server.qidoRoot,
+    patientName: DICOMWeb.getName(aSopInstance['00100010']),
+    patientId: DICOMWeb.getString(aSopInstance['00100020']),
+    patientAge: DICOMWeb.getNumber(aSopInstance['00101010']),
+    patientSize: DICOMWeb.getNumber(aSopInstance['00101020']),
+    patientWeight: DICOMWeb.getNumber(aSopInstance['00101030']),
+    accessionNumber: DICOMWeb.getString(aSopInstance['00080050']),
+    studyDate: DICOMWeb.getString(aSopInstance['00080020']),
+    modalities: DICOMWeb.getString(aSopInstance['00080061']),
+    studyDescription: DICOMWeb.getString(aSopInstance['00081030']),
+    imageCount: DICOMWeb.getString(aSopInstance['00201208']),
+    studyInstanceUid: DICOMWeb.getString(aSopInstance['0020000D']),
+    institutionName: DICOMWeb.getString(aSopInstance['00080080']),
+  };
+}
+
+/**
+ * Add a list of SOP Instances to a given study object descriptor
+ * @param {Object} server Object with server configuration paramenters
+ * @param {Object} study The study descriptor to which the given SOP instances will be added
+ * @param {Array} sopInstanceList A list of SOP instance objects
+ */
+async function addInstancesToStudy(server, study, sopInstanceList) {
+  return Promise.all(
+    sopInstanceList.map(function(sopInstance) {
+      return makeSOPInstance(server, study, sopInstance);
+    })
+  );
+}
+
 /**
  * Parses result data from a WADO search into Study MetaData
  * Returns an object populated with study metadata, including the
  * series list.
  *
- * @param server
- * @param studyInstanceUid
- * @param resultData
- * @returns {{seriesList: Array, patientName: *, patientId: *, accessionNumber: *, studyDate: *, modalities: *, studyDescription: *, imageCount: *, studyInstanceUid: *}}
+ * @param {Object} server Object with server configuration paramenters
+ * @param {Array} sopInstanceList List of SOP Instances that build up to the study
+ * @resolves {{seriesList: Array, patientName: *, patientId: *, accessionNumber: *, studyDate: *, modalities: *, studyDescription: *, imageCount: *, studyInstanceUid: *}}
  */
-async function resultDataToStudyMetadata(server, studyInstanceUid, resultData) {
-  if (!resultData.length) {
-    return;
+async function createStudyFromSOPInstanceList(server, sopInstanceList) {
+  if (Array.isArray(sopInstanceList) && sopInstanceList.length > 0) {
+    const firstSopInstance = sopInstanceList[0];
+    const study = createStudy(server, firstSopInstance);
+    await addInstancesToStudy(server, study, sopInstanceList);
+    return study;
   }
-
-  const anInstance = resultData[0];
-  if (!anInstance) {
-    return;
-  }
-
-  // TODO: Pass a reference ID to the server instead of including the URLs here
-  const studyData = {
-    seriesList: [],
-    studyInstanceUid,
-    wadoUriRoot: server.wadoUriRoot,
-    wadoRoot: server.wadoRoot,
-    qidoRoot: server.qidoRoot,
-    patientName: DICOMWeb.getName(anInstance['00100010']),
-    patientId: DICOMWeb.getString(anInstance['00100020']),
-    patientAge: DICOMWeb.getNumber(anInstance['00101010']),
-    patientSize: DICOMWeb.getNumber(anInstance['00101020']),
-    patientWeight: DICOMWeb.getNumber(anInstance['00101030']),
-    accessionNumber: DICOMWeb.getString(anInstance['00080050']),
-    studyDate: DICOMWeb.getString(anInstance['00080020']),
-    modalities: DICOMWeb.getString(anInstance['00080061']),
-    studyDescription: DICOMWeb.getString(anInstance['00081030']),
-    imageCount: DICOMWeb.getString(anInstance['00201208']),
-    studyInstanceUid: DICOMWeb.getString(anInstance['0020000D']),
-    institutionName: DICOMWeb.getString(anInstance['00080080']),
-  };
-
-  const seriesMap = {};
-
-  await Promise.all(
-    resultData.map(async function(instance) {
-      const seriesInstanceUid = DICOMWeb.getString(instance['0020000E']);
-      let series = seriesMap[seriesInstanceUid];
-
-      if (!series) {
-        series = {
-          seriesDescription: DICOMWeb.getString(instance['0008103E']),
-          modality: DICOMWeb.getString(instance['00080060']),
-          seriesInstanceUid: seriesInstanceUid,
-          seriesNumber: DICOMWeb.getNumber(instance['00200011']),
-          seriesDate: DICOMWeb.getString(instance['00080021']),
-          seriesTime: DICOMWeb.getString(instance['00080031']),
-          instances: [],
-        };
-        seriesMap[seriesInstanceUid] = series;
-        studyData.seriesList.push(series);
-      }
-
-      const sopInstanceUid = DICOMWeb.getString(instance['00080018']);
-      const wadouri = buildInstanceWadoUrl(
-        server,
-        studyInstanceUid,
-        seriesInstanceUid,
-        sopInstanceUid
-      );
-      const baseWadoRsUri = buildInstanceWadoRsUri(
-        server,
-        studyInstanceUid,
-        seriesInstanceUid,
-        sopInstanceUid
-      );
-      const wadorsuri = buildInstanceFrameWadoRsUri(
-        server,
-        studyInstanceUid,
-        seriesInstanceUid,
-        sopInstanceUid
-      );
-
-      const instanceSummary = {
-        imageType: DICOMWeb.getString(instance['00080008']),
-        sopClassUid: DICOMWeb.getString(instance['00080016']),
-        modality: DICOMWeb.getString(instance['00080060']),
-        sopInstanceUid,
-        instanceNumber: DICOMWeb.getNumber(instance['00200013']),
-        imagePositionPatient: DICOMWeb.getString(instance['00200032']),
-        imageOrientationPatient: DICOMWeb.getString(instance['00200037']),
-        frameOfReferenceUID: DICOMWeb.getString(instance['00200052']),
-        sliceLocation: DICOMWeb.getNumber(instance['00201041']),
-        samplesPerPixel: DICOMWeb.getNumber(instance['00280002']),
-        photometricInterpretation: DICOMWeb.getString(instance['00280004']),
-        planarConfiguration: DICOMWeb.getNumber(instance['00280006']),
-        rows: DICOMWeb.getNumber(instance['00280010']),
-        columns: DICOMWeb.getNumber(instance['00280011']),
-        pixelSpacing: DICOMWeb.getString(instance['00280030']),
-        pixelAspectRatio: DICOMWeb.getString(instance['00280034']),
-        bitsAllocated: DICOMWeb.getNumber(instance['00280100']),
-        bitsStored: DICOMWeb.getNumber(instance['00280101']),
-        highBit: DICOMWeb.getNumber(instance['00280102']),
-        pixelRepresentation: DICOMWeb.getNumber(instance['00280103']),
-        smallestPixelValue: DICOMWeb.getNumber(instance['00280106']),
-        largestPixelValue: DICOMWeb.getNumber(instance['00280107']),
-        windowCenter: DICOMWeb.getString(instance['00281050']),
-        windowWidth: DICOMWeb.getString(instance['00281051']),
-        rescaleIntercept: DICOMWeb.getNumber(instance['00281052']),
-        rescaleSlope: DICOMWeb.getNumber(instance['00281053']),
-        rescaleType: DICOMWeb.getNumber(instance['00281054']),
-        sourceImageInstanceUid: getSourceImageInstanceUid(instance),
-        laterality: DICOMWeb.getString(instance['00200062']),
-        viewPosition: DICOMWeb.getString(instance['00185101']),
-        acquisitionDateTime: DICOMWeb.getString(instance['0008002A']),
-        numberOfFrames: DICOMWeb.getNumber(instance['00280008']),
-        frameIncrementPointer: getFrameIncrementPointer(instance['00280009']),
-        frameTime: DICOMWeb.getNumber(instance['00181063']),
-        frameTimeVector: parseFloatArray(
-          DICOMWeb.getString(instance['00181065'])
-        ),
-        sliceThickness: DICOMWeb.getNumber(instance['00180050']),
-        spacingBetweenSlices: DICOMWeb.getString(instance['00180088']),
-        lossyImageCompression: DICOMWeb.getString(instance['00282110']),
-        derivationDescription: DICOMWeb.getString(instance['00282111']),
-        lossyImageCompressionRatio: DICOMWeb.getString(instance['00282112']),
-        lossyImageCompressionMethod: DICOMWeb.getString(instance['00282114']),
-        echoNumber: DICOMWeb.getString(instance['00180086']),
-        contrastBolusAgent: DICOMWeb.getString(instance['00180010']),
-        radiopharmaceuticalInfo: getRadiopharmaceuticalInfo(instance),
-        baseWadoRsUri: baseWadoRsUri,
-        wadouri: WADOProxy.convertURL(wadouri, server),
-        wadorsuri: WADOProxy.convertURL(wadorsuri, server),
-        imageRendering: server.imageRendering,
-        thumbnailRendering: server.thumbnailRendering,
-      };
-
-      // Get additional information if the instance uses "PALETTE COLOR" photometric interpretation
-      if (instanceSummary.photometricInterpretation === 'PALETTE COLOR') {
-        const redPaletteColorLookupTableDescriptor = parseFloatArray(
-          DICOMWeb.getString(instance['00281101'])
-        );
-        const greenPaletteColorLookupTableDescriptor = parseFloatArray(
-          DICOMWeb.getString(instance['00281102'])
-        );
-        const bluePaletteColorLookupTableDescriptor = parseFloatArray(
-          DICOMWeb.getString(instance['00281103'])
-        );
-        const palettes = await getPaletteColors(
-          server,
-          instance,
-          redPaletteColorLookupTableDescriptor
-        );
-
-        if (palettes) {
-          if (palettes.uid) {
-            instanceSummary.paletteColorLookupTableUID = palettes.uid;
-          }
-
-          instanceSummary.redPaletteColorLookupTableData = palettes.red;
-          instanceSummary.greenPaletteColorLookupTableData = palettes.green;
-          instanceSummary.bluePaletteColorLookupTableData = palettes.blue;
-          instanceSummary.redPaletteColorLookupTableDescriptor = redPaletteColorLookupTableDescriptor;
-          instanceSummary.greenPaletteColorLookupTableDescriptor = greenPaletteColorLookupTableDescriptor;
-          instanceSummary.bluePaletteColorLookupTableDescriptor = bluePaletteColorLookupTableDescriptor;
-        }
-      }
-
-      series.instances.push(instanceSummary);
-    })
-  );
-
-  return studyData;
+  throw new Error('Failed to create study out of provided SOP instance list');
 }
 
 /**
- * Retrieve Study MetaData from a DICOM server using a WADO call
- *
- * @param server
- * @param studyInstanceUid
- * @returns {Promise}
+ * Retrieve Study metadata from a DICOM server. If the server is configured to use lazy load, only the first series
+ * will be loaded and the property "studyLoader" will be set to let consumer load remaining series as needed
+ * @param {Object} server Object with server configuration paramenters
+ * @param {string} studyInstanceUid The Study Instance UID of the study which needs to be loaded
+ * @returns {Object} A study descriptor object
  */
 async function RetrieveMetadata(server, studyInstanceUid) {
-  const config = {
+  return (server.enableStudyLazyLoad !== false
+    ? lazyLoadStudyMetadata
+    : loadStudyMetadata)(server, studyInstanceUid);
+}
+
+/**
+ *
+ * @param {*} server
+ * @param {*} studyInstanceUID
+ */
+async function loadStudyMetadata(server, studyInstanceUID) {
+  const dicomWeb = new api.DICOMwebClient({
     url: server.wadoRoot,
     headers: DICOMWeb.getAuthorizationHeader(server),
-  };
-  const dicomWeb = new api.DICOMwebClient(config);
-  const options = {
-    studyInstanceUID: studyInstanceUid,
-  };
+  });
+  return dicomWeb
+    .retrieveStudyMetadata({ studyInstanceUID })
+    .then(result => createStudyFromSOPInstanceList(server, result));
+}
 
-  return dicomWeb.retrieveStudyMetadata(options).then(result => {
-    return resultDataToStudyMetadata(server, studyInstanceUid, result);
+async function lazyLoadStudyMetadata(server, studyInstanceUid) {
+  const seriesInstanceUids = await searchStudySeries(server, studyInstanceUid);
+  const dicomWeb = new api.DICOMwebClient({
+    url: server.wadoRoot,
+    headers: DICOMWeb.getAuthorizationHeader(server),
+  });
+  const seriesLoader = makeSeriesLoader(
+    dicomWeb,
+    studyInstanceUid,
+    seriesInstanceUids
+  );
+  const firstSeries = await seriesLoader.next();
+  const study = await createStudyFromSOPInstanceList(
+    server,
+    firstSeries.sopInstances
+  );
+  if (seriesLoader.hasNext()) {
+    attachSeriesLoader(server, study, seriesLoader);
+  }
+  return study;
+}
+
+function attachSeriesLoader(server, study, seriesLoader) {
+  study.seriesLoader = Object.freeze({
+    hasNext() {
+      return seriesLoader.hasNext();
+    },
+    async next() {
+      const series = await seriesLoader.next();
+      await addInstancesToStudy(server, study, series.sopInstances);
+      return study.seriesMap[series.seriesInstanceUID];
+    },
   });
 }
 
+/**
+ * Creates an immutable series loader object which loads each series sequentially using the iterator interface
+ * @param {DICOMWebClient} dicomWebClient The DICOMWebClient instance to be used for series load
+ * @param {string} studyInstanceUID The Study Instance UID from which series will be loaded
+ * @param {Array} seriesInstanceUIDList A list of Series Instance UIDs
+ * @returns {Object} Returns an object which supports loading of instances from each of given Series Instance UID
+ */
+function makeSeriesLoader(
+  dicomWebClient,
+  studyInstanceUID,
+  seriesInstanceUIDList
+) {
+  return Object.freeze({
+    hasNext() {
+      return seriesInstanceUIDList.length > 0;
+    },
+    async next() {
+      const seriesInstanceUID = seriesInstanceUIDList.shift();
+      const sopInstances = await dicomWebClient.retrieveSeriesMetadata({
+        studyInstanceUID,
+        seriesInstanceUID,
+      });
+      return { studyInstanceUID, seriesInstanceUID, sopInstances };
+    },
+  });
+}
+
+/**
+ * Search series of a given study
+ * @param {Object} server Object with server configuration paramenters
+ * @param {string} studyInstanceUID The Study Instance UID to search series from;
+ * @returns {Arrays} A list of Series Instance UIDs
+ */
+async function searchStudySeries(server, studyInstanceUID) {
+  const dicomWeb = new api.DICOMwebClient({
+    url: server.qidoRoot,
+    headers: DICOMWeb.getAuthorizationHeader(server),
+  });
+  const seriesList = await dicomWeb.searchForSeries({ studyInstanceUID });
+  return seriesList
+    .sort(seriesSortingCriteria)
+    .map(series => getSeriesInfo(series).seriesInstanceUid);
+}
+
+/**
+ * Series sorting criteria: series considered low priority are moved to the end
+ * of the list and series number is used to break ties
+ * @param {Object} firstSeries
+ * @param {Object} secondSeries
+ */
+function seriesSortingCriteria(firstSeries, secondSeries) {
+  const a = getSeriesInfo(firstSeries);
+  const b = getSeriesInfo(secondSeries);
+  if (!a.isLowPriority && b.isLowPriority) {
+    return -1;
+  }
+  if (a.isLowPriority && !b.isLowPriority) {
+    return 1;
+  }
+  return a.seriesNumber - b.seriesNumber;
+}
+
+/**
+ * Creates an object with processed series information and saves its reference
+ * inside the series object itself to simplify sorting
+ * @param {Object} series The raw series object
+ */
+function getSeriesInfo(series) {
+  let info = series[INFO];
+  if (!info) {
+    const modality = DICOMWeb.getString(series['00080060'], '').toUpperCase();
+    info = Object.freeze({
+      modality,
+      isLowPriority: isLowPriorityModality(modality),
+      seriesInstanceUid: DICOMWeb.getString(series['0020000E']),
+      seriesNumber: DICOMWeb.getNumber(series['00200011'], 0) || 0,
+    });
+    series[INFO] = info;
+  }
+  return info;
+}
+
 export default RetrieveMetadata;

platform/core/src/utils/b64toBlob.js

@@ -0,0 +1,22 @@
+/* Enabled JPEG images downloading on IE11. */
+const b64toBlob = (b64Data, contentType = '', sliceSize = 512) => {
+  const byteCharacters = atob(b64Data);
+  const byteArrays = [];
+
+  for (let offset = 0; offset < byteCharacters.length; offset += sliceSize) {
+    const slice = byteCharacters.slice(offset, offset + sliceSize);
+
+    const byteNumbers = new Array(slice.length);
+    for (let i = 0; i < slice.length; i++) {
+      byteNumbers[i] = slice.charCodeAt(i);
+    }
+
+    const byteArray = new Uint8Array(byteNumbers);
+    byteArrays.push(byteArray);
+  }
+
+  const blob = new Blob(byteArrays, { type: contentType });
+  return blob;
+};
+
+export default b64toBlob;

platform/core/src/utils/dicomLoaderService.js

@@ -0,0 +1,199 @@
+import cornerstone from 'cornerstone-core';
+import cornerstoneWADOImageLoader from 'cornerstone-wado-image-loader';
+import { api } from 'dicomweb-client';
+import DICOMWeb from '../DICOMWeb';
+
+const getImageId = imageObj => {
+  if (!imageObj) {
+    return;
+  }
+
+  return typeof imageObj.getImageId === 'function'
+    ? imageObj.getImageId()
+    : imageObj.url;
+};
+
+const findImageIdOnStudies = (studies, displaySetInstanceUid) => {
+  const study = studies.find(study => {
+    const displaySet = study.displaySets.some(
+      displaySet => displaySet.displaySetInstanceUid === displaySetInstanceUid
+    );
+    return displaySet;
+  });
+  const { seriesList = [] } = study;
+  const { instances = [] } = seriesList[0] || {};
+  const instance = instances[0];
+
+  return getImageId(instance);
+};
+
+const someInvalidStrings = strings => {
+  const stringsArray = Array.isArray(strings) ? strings : [strings];
+  const emptyString = string => !string;
+  let invalid = stringsArray.some(emptyString);
+  return invalid;
+};
+
+const getImageInstance = dataset => {
+  return dataset && dataset.images && dataset.images[0];
+};
+
+const getImageInstanceId = imageInstance => {
+  return getImageId(imageInstance);
+};
+
+const fetchIt = (url, headers = DICOMWeb.getAuthorizationHeader()) => {
+  return fetch(url, headers).then(response => response.arrayBuffer());
+};
+
+const cornerstoneRetriever = imageId => {
+  return cornerstone.loadAndCacheImage(imageId).then(image => {
+    return image && image.data && image.data.byteArray.buffer;
+  });
+};
+
+const wadorsRetriever = (
+  url,
+  studyInstanceUID,
+  seriesInstanceUID,
+  sopInstanceUID,
+  headers = DICOMWeb.getAuthorizationHeader()
+) => {
+  const config = {
+    url,
+    headers,
+  };
+  const dicomWeb = new api.DICOMwebClient(config);
+
+  return dicomWeb.retrieveInstance({
+    studyInstanceUID,
+    seriesInstanceUID,
+    sopInstanceUID,
+  });
+};
+
+const getImageLoaderType = imageId => {
+  const loaderRegExp = /^\w+\:/;
+  const loaderType = loaderRegExp.exec(imageId);
+
+  return (
+    (loaderRegExp.lastIndex === 0 &&
+      loaderType &&
+      loaderType[0] &&
+      loaderType[0].replace(':', '')) ||
+    ''
+  );
+};
+
+const DicomLoaderService = new (class {
+  getLocalData(dataset, studies) {
+    if (dataset && dataset.localFile) {
+      // Use referenced imageInstance
+      const imageInstance = getImageInstance(dataset);
+      let imageId = getImageInstanceId(imageInstance);
+
+      // or Try to get it from studies
+      if (someInvalidStrings(imageId)) {
+        imageId = findImageIdOnStudies(studies, dataset.displaySetInstanceUid);
+      }
+
+      if (!someInvalidStrings(imageId)) {
+        return cornerstoneWADOImageLoader.wadouri.loadFileRequest(imageId);
+      }
+    }
+  }
+
+  getDataByImageType(dataset) {
+    const imageInstance = getImageInstance(dataset);
+
+    if (imageInstance) {
+      const imageId = getImageInstanceId(imageInstance);
+      let getDicomDataMethod = fetchIt;
+      const loaderType = getImageLoaderType(imageId);
+
+      switch (loaderType) {
+        case 'dicomfile':
+          getDicomDataMethod = cornerstoneRetriever.bind(this, imageId);
+          break;
+        case 'wadors':
+          const url = imageInstance.getData().wadoRoot;
+          const studyInstanceUID = imageInstance.getStudyInstanceUID();
+          const seriesInstanceUID = imageInstance.getSeriesInstanceUID();
+          const sopInstanceUID = imageInstance.getSOPInstanceUID();
+          const invalidParams = someInvalidStrings([
+            url,
+            studyInstanceUID,
+            seriesInstanceUID,
+            sopInstanceUID,
+          ]);
+          if (invalidParams) {
+            return;
+          }
+
+          getDicomDataMethod = wadorsRetriever.bind(
+            this,
+            url,
+            studyInstanceUID,
+            seriesInstanceUID,
+            sopInstanceUID
+          );
+          break;
+        case 'wadouri':
+          // Strip out the image loader specifier
+          imageId = imageId.substring(imageId.indexOf(':') + 1);
+
+          if (someInvalidStrings(imageId)) {
+            return;
+          }
+          getDicomDataMethod = fetchIt.bind(this, imageId);
+          break;
+      }
+
+      return getDicomDataMethod();
+    }
+  }
+
+  getDataByDatasetType(dataset) {
+    const {
+      studyInstanceUid,
+      seriesInstanceUid,
+      sopInstanceUid,
+      authorizationHeaders,
+      wadoRoot,
+      wadoUri,
+    } = dataset;
+    // Retrieve wadors or just try to fetch wadouri
+    if (!someInvalidStrings(wadoRoot)) {
+      return wadorsRetriever(
+        wadoRoot,
+        studyInstanceUid,
+        seriesInstanceUid,
+        sopInstanceUid,
+        authorizationHeaders
+      );
+    } else if (!someInvalidStrings(wadoUri)) {
+      return fetchIt(wadoUri, { headers: authorizationHeaders });
+    }
+  }
+
+  *getLoaderIterator(dataset, studies) {
+    yield this.getLocalData(dataset, studies);
+    yield this.getDataByImageType(dataset);
+    yield this.getDataByDatasetType(dataset);
+  }
+
+  findDicomDataPromise(dataset, studies) {
+    const loaderIterator = this.getLoaderIterator(dataset, studies);
+    // it returns first valid retriever method.
+    for (const loader of loaderIterator) {
+      if (loader) {
+        return loader;
+      }
+    }
+
+    // in case of no valid loader
+    throw new Error('Invalid dicom data loader');
+  }
+})();
+
+export default DicomLoaderService;

platform/core/src/utils/getWADORSImageId.js

@@ -5,11 +5,16 @@ function getWADORSImageUrl(instance, frame) {
     return;
   }
 
-  // We need to sum 1 because WADO-RS frame number is 1-based
-  frame = frame ? parseInt(frame) + 1 : 1;
+  // Use null to obtain an imageId which represents the instance
+  if (frame === null) {
+    wadorsuri = wadorsuri.replace(/frames\/(\d+)/, '');
+  } else {
+    // We need to sum 1 because WADO-RS frame number is 1-based
+    frame = frame ? parseInt(frame) + 1 : 1;
 
-  // Replaces /frame/1 by /frame/{frame}
-  wadorsuri = wadorsuri.replace(/frames\/(\d+)/, `frames/${frame}`);
+    // Replaces /frame/1 by /frame/{frame}
+    wadorsuri = wadorsuri.replace(/frames\/(\d+)/, `frames/${frame}`);
+  }
 
   return wadorsuri;
 }

platform/core/src/utils/index.js

@@ -8,6 +8,10 @@ import sortBy from './sortBy.js';
 import studyMetadataManager from './studyMetadataManager';
 import updateMetaDataManager from './updateMetaDataManager.js';
 import writeScript from './writeScript.js';
+import DicomLoaderService from './dicomLoaderService.js';
+import b64toBlob from './b64toBlob.js';
+import * as urlUtil from './urlUtil';
+import makeCancelable from './makeCancelable';
 
 const utils = {
   guid,
@@ -16,11 +20,15 @@ const utils = {
   addServers,
   sortBy,
   writeScript,
+  b64toBlob,
   StackManager,
   studyMetadataManager,
   // Updates WADO-RS metaDataManager
   updateMetaDataManager,
   DICOMTagDescriptions,
+  DicomLoaderService,
+  urlUtil,
+  makeCancelable,
 };
 
 export {
@@ -30,11 +38,15 @@ export {
   addServers,
   sortBy,
   writeScript,
+  b64toBlob,
   StackManager,
   studyMetadataManager,
   // Updates WADO-RS metaDataManager
   updateMetaDataManager,
   DICOMTagDescriptions,
+  DicomLoaderService,
+  urlUtil,
+  makeCancelable,
 };
 
 export default utils;

platform/core/src/utils/index.test.js

@@ -9,11 +9,15 @@ describe('Top level exports', () => {
       'addServers',
       'sortBy',
       'writeScript',
+      'b64toBlob',
       'StackManager',
       'studyMetadataManager',
       // Updates WADO-RS metaDataManager
       'updateMetaDataManager',
       'DICOMTagDescriptions',
+      'DicomLoaderService',
+      'urlUtil',
+      'makeCancelable',
     ].sort();
 
     const exports = Object.keys(utils.default).sort();

platform/core/src/utils/isDisplaySetReconstructable.js

@@ -0,0 +1,157 @@
+/**
+ * Checks if a series is reconstructable to a 3D volume.
+ *
+ * @param {Object} series The `OHIFSeriesMetadata` object.
+ * @param {Object[]} instances The `OHIFInstanceMetadata` object
+ */
+export default function isDisplaySetReconstructable(series, instances) {
+  // Can't reconstruct if we only have one image.
+
+  const modality = series._data.modality; // TODO -> Is there a better way to get this?
+  const isMultiframe = instances[0].getRawValue('x00280008') > 1;
+
+  if (!constructableModalities.includes(modality)) {
+    return { value: false };
+  }
+
+  if (!isMultiframe && instances.length === 1) {
+    return { values: false };
+  }
+
+  if (isMultiframe) {
+    return processMultiframe(instances[0]);
+  } else {
+    return processSingleframe(instances);
+  }
+}
+
+function processMultiframe(instance) {
+  //TODO: deal with multriframe checks! return true for now.
+  return { value: true };
+}
+
+function processSingleframe(instances) {
+  const firstImage = instances[0];
+  const firstImageRows = firstImage.getTagValue('x00280010');
+  const firstImageColumns = firstImage.getTagValue('x00280011');
+  const firstImageSamplesPerPixel = firstImage.getTagValue('x00280002');
+  // Note: No need to unpack iop, can compare string form.
+  const firstImageOrientationPatient = firstImage.getTagValue('x00200037');
+
+  // Can't reconstruct if we:
+  // -- Have a different dimensions within a displaySet.
+  // -- Have a different number of components within a displaySet.
+  // -- Have different orientations within a displaySet.
+  for (let i = 1; i < instances.length; i++) {
+    const instance = instances[i];
+    const rows = instance.getTagValue('x00280010');
+    const columns = instance.getTagValue('x00280011');
+    const samplesPerPixel = instance.getTagValue('x00280002');
+    const imageOrientationPatient = instance.getTagValue('x00200037');
+
+    if (
+      rows !== firstImageRows ||
+      columns !== firstImageColumns ||
+      samplesPerPixel !== firstImageSamplesPerPixel ||
+      imageOrientationPatient !== firstImageOrientationPatient
+    ) {
+      return { value: false };
+    }
+  }
+
+  let missingFrames = 0;
+
+  // Check if frame spacing is approximately equal within a tolerance.
+  // If spacing is on a uniform grid but we are missing frames,
+  // Allow reconstruction, but pass back the number of missing frames.
+  if (instances.length > 2) {
+    const firstIpp = _getImagePositionPatient(firstImage);
+    const lastIpp = _getImagePositionPatient(instances[instances.length - 1]);
+    const averageSpacingBetweenFrames =
+      _getPerpendicularDistance(firstIpp, lastIpp) / (instances.length - 1);
+
+    let previousIpp = firstIpp;
+
+    for (let i = 1; i < instances.length; i++) {
+      const instance = instances[i];
+      const ipp = _getImagePositionPatient(instance);
+
+      const spacingBetweenFrames = _getPerpendicularDistance(ipp, previousIpp);
+      const spacingIssue = _getSpacingIssue(
+        spacingBetweenFrames,
+        averageSpacingBetweenFrames
+      );
+
+      if (spacingIssue) {
+        const issue = spacingIssue.issue;
+
+        if (issue === reconstructionIssues.MISSING_FRAMES) {
+          missingFrames += spacingIssue.missingFrames;
+        } else if (issue === reconstructionIssues.IRREGULAR_SPACING) {
+          return { value: false };
+        }
+      }
+
+      previousIpp = ipp;
+    }
+  }
+
+  return { value: true, missingFrames };
+}
+
+// TODO: Is 10% a reasonable tolerance for spacing?
+const tolerance = 0.1;
+
+/**
+ * Checks for spacing issues.
+ *
+ * @param {number} spacing The spacing between two frames.
+ * @param {number} averageSpacing The average spacing between all frames.
+ *
+ * @returns {Object} An object containing the issue and extra information if necessary.
+ */
+function _getSpacingIssue(spacing, averageSpacing) {
+  const equalWithinTolerance =
+    Math.abs(spacing - averageSpacing) < averageSpacing * tolerance;
+
+  if (equalWithinTolerance) {
+    return;
+  }
+
+  const multipleOfAverageSpacing = spacing / averageSpacing;
+
+  const numberOfSpacings = Math.round(multipleOfAverageSpacing);
+
+  const errorForEachSpacing =
+    Math.abs(spacing - numberOfSpacings * averageSpacing) / numberOfSpacings;
+
+  if (errorForEachSpacing < tolerance * averageSpacing) {
+    return {
+      issue: reconstructionIssues.MISSING_FRAMES,
+      missingFrames: numberOfSpacings - 1,
+    };
+  }
+
+  return { issue: reconstructionIssues.IRREGULAR_SPACING };
+}
+
+function _getImagePositionPatient(instance) {
+  return instance
+    .getTagValue('x00200032')
+    .split('\\')
+    .map(element => Number(element));
+}
+
+function _getPerpendicularDistance(a, b) {
+  return Math.sqrt(
+    Math.pow(a[0] - b[0], 2) +
+      Math.pow(a[1] - b[1], 2) +
+      Math.pow(a[2] - b[2], 2)
+  );
+}
+
+const constructableModalities = ['MR', 'CT', 'PT', 'NM'];
+const reconstructionIssues = {
+  MISSING_FRAMES: 'missingframes',
+  IRREGULAR_SPACING: 'irregularspacing',
+};

platform/core/src/utils/isLowPriorityModality.js

@@ -0,0 +1,5 @@
+const LOW_PRIORITY_MODALITIES = Object.freeze(['SEG', 'KO', 'PR']);
+
+export default function isLowPriorityModality(modality) {
+  return LOW_PRIORITY_MODALITIES.includes(modality);
+}

platform/core/src/utils/makeCancelable.js

@@ -0,0 +1,19 @@
+export default function makeCancelable(thenable) {
+  let isCanceled = false;
+  const promise = Promise.resolve(thenable).then(
+    function(result) {
+      if (isCanceled) throw Object.freeze({ isCanceled });
+      return result;
+    },
+    function(error) {
+      if (isCanceled) throw Object.freeze({ isCanceled, error });
+      throw error;
+    }
+  );
+  return Object.assign(Object.create(promise), {
+    then: promise.then.bind(promise),
+    cancel() {
+      isCanceled = true;
+    },
+  });
+}

platform/core/src/utils/updateMetaDataManager.js

@@ -70,32 +70,48 @@ const getWadoRsInstanceMetaData = (study, series, instance) => {
     .toJSON();
 };
 
-export default function updateMetaDataManager(study) {
-  study.seriesList.forEach(series => {
-    series.instances.forEach(instance => {
-      // Cache just images that are going to be loaded via WADO-RS
-      if (
-        instance.imageRendering !== 'wadors' &&
-        instance.thumbnailRendering !== 'wadors'
-      ) {
-        return;
-      }
+/**
+ * Update metadata manager with instances of a specifc series
+ * @param {Object} study A plain study descriptor object
+ * @param {Object} series A Series descriptor object contaning the instances to be added to the manager
+ */
+function updateMetaDataManagerForSeries(study, series) {
+  series.instances.forEach(instance => {
+    // Cache just images that are going to be loaded via WADO-RS
+    if (
+      instance.imageRendering !== 'wadors' &&
+      instance.thumbnailRendering !== 'wadors'
+    ) {
+      return;
+    }
 
-      const metaData = getWadoRsInstanceMetaData(study, series, instance);
-      const numberOfFrames = instance.numberOfFrames || 1;
+    const metaData = getWadoRsInstanceMetaData(study, series, instance);
+    const numberOfFrames = instance.numberOfFrames || 1;
 
-      // We can share the same metaData with all frames because it doesn't have
-      // any frame specific data, such as frameNumber, pixelData, offset, etc.
-      // WADO-RS frame number is 1-based
-      for (let frameNumber = 0; frameNumber < numberOfFrames; frameNumber++) {
-        const imageId = getWADORSImageId(instance, frameNumber);
+    // We can share the same metaData with all frames because it doesn't have
+    // any frame specific data, such as frameNumber, pixelData, offset, etc.
+    // WADO-RS frame number is 1-based
+    for (let frameNumber = 0; frameNumber < numberOfFrames; frameNumber++) {
+      const imageId = getWADORSImageId(instance, frameNumber);
 
-        // TODO Drop dependency on this
-        cornerstoneWADOImageLoader.wadors.metaDataManager.add(
-          imageId,
-          metaData
-        );
-      }
-    });
+      // TODO Drop dependency on this
+      cornerstoneWADOImageLoader.wadors.metaDataManager.add(imageId, metaData);
+    }
   });
 }
+
+/**
+ * Update metadata manager
+ * @param {Object} study A plain study descriptor object
+ * @param {string} [seriesInstanceUid] The Series Instance UID of the series to be added (Optional)
+ */
+export default function updateMetaDataManager(study, seriesInstanceUid) {
+  if (seriesInstanceUid) {
+    const series = study.seriesMap[seriesInstanceUid];
+    updateMetaDataManagerForSeries(study, series);
+  } else {
+    study.seriesList.forEach(series => {
+      updateMetaDataManagerForSeries(study, series);
+    });
+  }
+}

platform/core/src/utils/urlUtil.js

@@ -0,0 +1,73 @@
+import lib from 'query-string';
+
+const PARAM_SEPARATOR = ';';
+const PARAM_PATTERN_IDENTIFIER = ':';
+
+function toLowerCaseFirstLetter(word) {
+  return word[0].toLowerCase() + word.slice(1);
+}
+const getQueryFilters = (location = {}) => {
+  const { search } = location;
+
+  if (!search) {
+    return;
+  }
+
+  const searchParameters = parse(search);
+  const filters = {};
+
+  Object.entries(searchParameters).forEach(([key, value]) => {
+    filters[toLowerCaseFirstLetter(key)] = value;
+  });
+
+  return filters;
+};
+
+const decode = (strToDecode = '') => {
+  try {
+    const decoded = window.atob(strToDecode);
+    return decoded;
+  } catch (e) {
+    return strToDecode;
+  }
+};
+
+const parse = toParse => {
+  if (toParse) {
+    return lib.parse(toParse);
+  }
+
+  return {};
+};
+const parseParam = paramStr => {
+  const _paramDecoded = decode(paramStr);
+  if (_paramDecoded && typeof _paramDecoded === 'string') {
+    return _paramDecoded.split(PARAM_SEPARATOR);
+  }
+};
+
+const replaceParam = (path = '', paramKey, paramValue) => {
+  const paramPattern = `${PARAM_PATTERN_IDENTIFIER}${paramKey}`;
+  if (paramValue) {
+    return path.replace(paramPattern, paramValue);
+  }
+
+  return path;
+};
+
+const isValidPath = path => {
+  const paramPatternPiece = `/${PARAM_PATTERN_IDENTIFIER}`;
+  return path.indexOf(paramPatternPiece) < 0;
+};
+
+const queryString = {
+  getQueryFilters,
+};
+
+const paramString = {
+  isValidPath,
+  parseParam,
+  replaceParam,
+};
+
+export { parse, queryString, paramString };

platform/i18n/CHANGELOG.md

@@ -3,6 +3,28 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [0.51.0](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.50.5...@ohif/i18n@0.51.0) (2019-10-15)
+
+
+### Features
+
+* Add browser info and app version ([#1046](https://github.com/OHIF/Viewers/issues/1046)) ([c217b8b](https://github.com/OHIF/Viewers/commit/c217b8b))
+
+
+
+
+
+## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.50.4...@ohif/i18n@0.50.5) (2019-10-04)
+
+
+### Bug Fixes
+
+* CineDialog buttons label ([#998](https://github.com/OHIF/Viewers/issues/998)) ([4df624b](https://github.com/OHIF/Viewers/commit/4df624b))
+
+
+
+
+
 ## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.50.3...@ohif/i18n@0.50.4) (2019-09-10)
 
 **Note:** Version bump only for package @ohif/i18n

platform/i18n/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/i18n",
-  "version": "0.50.4",
+  "version": "0.51.0",
   "description": "Internationalization library for The OHIF Viewer",
   "author": "OHIF",
   "license": "MIT",

platform/i18n/src/locales/en-US/AboutModal.json

@@ -0,0 +1,14 @@
+{
+  "Browser": "Browser",
+  "Build Number": "Build Number",
+  "Latest Master Commits": "Latest Master Commits",
+  "More details": "More details",
+  "Name": "Name",
+  "OHIF Viewer - About": "OHIF Viewer - About",
+  "OS": "OS",
+  "Report an issue": "Report an issue",
+  "Repository URL": "Repository URL",
+  "Value": "Value",
+  "Version Information": "Version Information",
+  "Visit the forum": "Visit the forum"
+}

platform/i18n/src/locales/en-US/CineDialog.json

@@ -1,8 +1,8 @@
 {
-  "Next image": "$t(Common:Play) $t(Common:Image)",
+  "Next image": "$t(Common:Next) $t(Common:Image)",
   "Play / Stop": "$t(Common:Play) / $t(Common:Stop)",
   "Previous image": "$t(Common:Previous) $t(Common:Image)",
   "Skip to first image": "Skip to first $t(Common:Image)",
-  "Skip to last image": "Skip, to last $t(Common:Image)",
+  "Skip to last image": "Skip to last $t(Common:Image)",
   "fps": "fps"
 }

platform/i18n/src/locales/en-US/index.js

@@ -1,3 +1,4 @@
+import AboutModal from "./AboutModal.json";
 import Buttons from "./Buttons.json";
 import CineDialog from "./CineDialog.json";
 import Common from "./Common.json";
@@ -8,6 +9,7 @@ import UserPreferencesModal from "./UserPreferencesModal.json";
 
 export default { 
   'en-US': {
+    AboutModal,
     Buttons,
     CineDialog,
     Common,

platform/i18n/src/locales/es/CineDialog.json

@@ -1,5 +1,5 @@
 {
-  "Next image": " $t(Common:Image) $t(Common:Next)",
+  "Next image": "$t(Common:Image) $t(Common:Next)",
   "Play / Stop": "$t(Common:Play) / Stop",
   "Previous image": "$t(Common:Image) $t(Common:Previous)",
   "Skip to first image": "Ir a la primera $t(Common:Image)",

platform/i18n/src/locales/ja-JP/CineDialog.json

@@ -1,5 +1,5 @@
 {
-  "Next image": "$t(Common:Play) $t(Common:Image)",
+  "Next image": "$t(Common:Next) $t(Common:Image)",
   "Play / Stop": "$t(Common:Play) / $t(Common:Stop)",
   "Previous image": "$t(Common:Previous) $t(Common:Image)",
   "Skip to first image": "$t(Common:Image)最初にスキップ",

platform/i18n/src/locales/pt-BR/AboutModal.json

@@ -0,0 +1,14 @@
+{
+  "Browser": "Navegador",
+  "Build Number": "Número da compilação",
+  "Latest Master Commits": "Últimos Commits na Master",
+  "More details": "Mais detalhes",
+  "Name": "Nome",
+  "OHIF Viewer - About": "OHIF Viewer - Sobre",
+  "OS": "SO",
+  "Report an issue": "Informar um problema",
+  "Repository URL": "URL do Repositório",
+  "Value": "Valor",
+  "Version Information": "Informação da Versão",
+  "Visit the forum": "Visite o fórum"
+}