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No files matched your search
@@ -122,7 +122,7 @@ window.config = {
|
||||
```
|
||||
|
||||
- Install the viewer:
|
||||
`window.OHIFStandaloneViewer.installViewer(window.config);`
|
||||
`window.OHIFViewer.installViewer(window.config);`
|
||||
|
||||
This exact setup is demonstrated in this
|
||||
[CodeSandbox](https://codesandbox.io/s/viewer-script-tag-tprch) and in our
|
||||
|
||||
@@ -127,10 +127,107 @@ appropriate headers. You can find an example of this setup in our
|
||||
|
||||
#### What if my archive doesn't support DicomWeb?
|
||||
|
||||
> This is possible to do with the OHIF Viewer, but not as straightforward. Look
|
||||
> out for documentation on this subject in the near future.
|
||||
It's possible to supply all Study data via JSON format, in the event you do not have a DicomWeb endpoint.
|
||||
You can host all of the relevant files on any web accessible server (Amazon S3, Azure Blob Storage, Local file server etc.)
|
||||
|
||||
This JSON is supplied via the '?url=' query parameter.
|
||||
It should reference an endpoint that returns **application/json** formatted text.
|
||||
|
||||
If you do not have an API, you can simply return a text file containing the JSON from any web server.
|
||||
|
||||
|
||||
You tell the OHIF viewer to use JSON by appending the `'?url='` query to the `/Viewer` route:
|
||||
|
||||
eg. `https://my-test-ohif-server/viewer?url=https://my-json-server/study-uid.json`
|
||||
|
||||
The returned JSON object must contain a single root object with a 'studies' array.
|
||||
|
||||
|
||||
*Sample JSON format:*
|
||||
```JSON
|
||||
{
|
||||
"studies": [
|
||||
{
|
||||
"StudyInstanceUID": "1.2.840.113619.2.5.1762583153.215519.978957063.78",
|
||||
"StudyDescription": "BRAIN SELLA",
|
||||
"StudyDate": "20010108",
|
||||
"StudyTime": "120022",
|
||||
"PatientName": "MISTER^MR",
|
||||
"PatientId": "832040",
|
||||
"series": [
|
||||
{
|
||||
"SeriesDescription": "SAG T-1",
|
||||
"SeriesInstanceUID": "1.2.840.113619.2.5.1762583153.215519.978957063.121",
|
||||
"SeriesNumber": 2,
|
||||
"SeriesDate": "20010108",
|
||||
"SeriesTime": "120318",
|
||||
"Modality": "MR",
|
||||
"instances": [
|
||||
{
|
||||
"metadata": {
|
||||
"Columns": 512,
|
||||
"Rows": 512,
|
||||
"InstanceNumber": 3,
|
||||
"AcquisitionNumber": 0,
|
||||
"PhotometricInterpretation": "MONOCHROME2",
|
||||
"BitsAllocated": 16,
|
||||
"BitsStored": 16,
|
||||
"PixelRepresentation": 1,
|
||||
"SamplesPerPixel": 1,
|
||||
"PixelSpacing": [0.390625, 0.390625],
|
||||
"HighBit": 15,
|
||||
"ImageOrientationPatient": [0,1,0,0,0,-1],
|
||||
"ImagePositionPatient": [11.600000,-92.500000, 98.099998],
|
||||
"FrameOfReferenceUID": "1.2.840.113619.2.5.1762583153.223134.978956938.470",
|
||||
"ImageType": ["ORIGINAL","PRIMARY","OTHER"],
|
||||
"Modality": "MR",
|
||||
"SOPInstanceUID": "1.2.840.113619.2.5.1762583153.215519.978957063.124",
|
||||
"SeriesInstanceUID": "1.2.840.113619.2.5.1762583153.215519.978957063.121",
|
||||
"StudyInstanceUID": "1.2.840.113619.2.5.1762583153.215519.978957063.78"
|
||||
},
|
||||
"url": "dicomweb://s3.amazonaws.com/lury/MRStudy/1.2.840.113619.2.5.1762583153.215519.978957063.124.dcm"
|
||||
}
|
||||
]
|
||||
}
|
||||
]
|
||||
}
|
||||
]
|
||||
}
|
||||
```
|
||||
More info on this JSON format can be found here [Issue #1500](https://github.com/OHIF/Viewers/issues/1500)
|
||||
|
||||
|
||||
**Implementation Notes:**
|
||||
|
||||
1. When hosting the viewer, you will also need to host a /viewer route on the server - or the browser may not be able to find the route.
|
||||
2. For each instance url (dicom object) in the returned JSON, you must prefix the `url` with `dicomweb:` in order for the cornerstone image loader to retrieve it correctly.
|
||||
eg. `https://image-server/my-image.dcm` ---> `dicomweb:https://image-server/my-image.dcm`
|
||||
3. The JSON format above is compatible with >= v3.7.8 of the application. Older versions of the viewer used a different JSON format. As of 20/04/20 the public [https://viewer.ohif.org/] is a pre 3.0 version that does not support this format yet.
|
||||
4. The JSON format is case-sensitive. Please ensure you have matched casing with the naturalised Dicom format referenced in [Issue #1500](https://github.com/OHIF/Viewers/issues/1500).
|
||||
|
||||
*CORS Issues (Cross-Origin Resource Sharing)*
|
||||
|
||||
If you host a JSON API or Images on a different domain from the the app itself, you will likely have CORS issues. This will also happen when testing from Localhost and reaching out to remote servers.
|
||||
Even if the domain is the same, different ports, subdomains or protocols (https vs http) will also cause CORS errors.
|
||||
You will to need add a configuration on each server hosting these assets to allow your App server origin.
|
||||
|
||||
For example:
|
||||
|
||||
Lets assume your application is hosted on `https://my-ohif-server.com`.
|
||||
|
||||
Your JSON API is hosted on `https://my-json-api.aws.com`
|
||||
|
||||
And your images are stored on Amazon S3 at `https://my-s3-bucket.aws.com`
|
||||
|
||||
When you first start your application, browsing to `https://my-ohif-server.com/viewer?url=https://my-json-api.aws.com/api/my-json-study-info.json`, you will likely get a CORS error in the browser console as it tries to connect to `https://my-json-api.aws.com`.
|
||||
|
||||
Adding a setting on the JSON server to allow the CORS origin = `https://my-ohif-server.com` should solve this.
|
||||
|
||||
Next, you will likely get a similar CORS error, as the browser tries to go to `https://my-s3-bucket.aws.com`.
|
||||
You will need to go to the S3 bucket configuration, and add a CORS setting to allow origin = `https://my-ohif-server.com`.
|
||||
|
||||
Essentially, whenever the application connects to a remote resource, you will need to add the applications url to the allowed CORS Origins on that resource. Adding an origin similar to https://localhost:3000 will also allow for local testing.
|
||||
|
||||
...
|
||||
|
||||
### Securing Your Data
|
||||
|
||||
|
||||
@@ -126,12 +126,39 @@ globally defined styles/scripts.
|
||||
> We're trying to embed the OHIF Viewer into an existing React App, but seeing
|
||||
> react-dom and react conflicts. What can we do?
|
||||
|
||||
If you are installing OHIF viewer inside another react app, you may use `installViewer` as follows:
|
||||
```
|
||||
import { installViewer } from '@ohif/viewer'
|
||||
|
||||
const ohifViewerConfig = window.config // or set it here
|
||||
const containerId = 'ohif'
|
||||
const componentRenderedOrUpdatedCallback = function() {
|
||||
console.log('OHIF Viewer rendered/updated');
|
||||
};
|
||||
|
||||
componentDidMount() {
|
||||
installViewer(
|
||||
ohifViewerConfig,
|
||||
containerId,
|
||||
componentRenderedOrUpdatedCallback
|
||||
);
|
||||
}
|
||||
|
||||
render () {
|
||||
...
|
||||
//you can render in any element you wish
|
||||
<AnyTag id={containerId}/>
|
||||
}
|
||||
|
||||
```
|
||||
|
||||
`installViewer` is a convenience method that pulls in some dependencies that may
|
||||
not be compatible with existing `react` apps. `@ohif/viewer` also exports `App`
|
||||
which is a react component that takes the `configuration` outlined above as
|
||||
props. You can use it as a reusable component, and to avoid `react` version
|
||||
conflict issues.
|
||||
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
@@ -11,7 +11,59 @@ are:
|
||||
```js
|
||||
window.config = {
|
||||
routerBasename: '/',
|
||||
whiteLabelling: {},
|
||||
/**
|
||||
* "White Labeling" is used to change the branding, look, and feel of the OHIF
|
||||
* Viewer. These settings, and the color variables that are used by our components,
|
||||
* are the easiest way to rebrand the application.
|
||||
*
|
||||
* More extensive changes are made possible through swapping out the UI library,
|
||||
* Viewer project, or extensions.
|
||||
*/
|
||||
whiteLabeling: {
|
||||
/* Optional: Should return a React component to be rendered in the "Logo" section of the application's Top Navigation bar */
|
||||
createLogoComponentFn: function(React) {
|
||||
return React.createElement('a', {
|
||||
target: '_self',
|
||||
rel: 'noopener noreferrer',
|
||||
className: 'header-brand',
|
||||
href: '/',
|
||||
style: {
|
||||
display: 'block',
|
||||
textIndent: '-9999px',
|
||||
background: 'url(/svg-file-hosted-at-domain-root.svg)',
|
||||
backgroundSize: 'contain',
|
||||
backgroundRepeat: 'no-repeat',
|
||||
width: '200px',
|
||||
},
|
||||
});
|
||||
},
|
||||
},
|
||||
/**
|
||||
* Internally, the OHIF Viewer fetches data primarily with the
|
||||
* `cornerstoneWADOImageLoader` and the `DICOMWebClient`. If either of these
|
||||
* receive a non-200 response, this method allows you to handle that error.
|
||||
*
|
||||
* Common use cases include:
|
||||
* - Showing a notification with the UINotificationService
|
||||
* - Redirecting the user
|
||||
* - Refreshing an auth token
|
||||
*
|
||||
* @param {Object} error - JS new Error()
|
||||
* @param {XMLHttpRequest} error.request - The XHR request that's onreadystate change triggered this callback
|
||||
* @param {string} error.response - The XHR's response property
|
||||
* @param {number} error.status - The XHR's status property
|
||||
*/
|
||||
httpErrorHandler: error => {
|
||||
const { request: xhr, response, status } = err;
|
||||
const { responseType, statusText } = xhr;
|
||||
|
||||
// In local files, status is 0 upon success in Firefox
|
||||
if (xhr.readyState === XMLHttpRequest.DONE) {
|
||||
console.log(statusText, response, responseType);
|
||||
} else {
|
||||
console.warn('Likely CORS error');
|
||||
}
|
||||
},
|
||||
extensions: [],
|
||||
showStudyList: true,
|
||||
filterQueryParam: false,
|
||||
|
||||
@@ -66,11 +66,11 @@ open to pull requests and discussion issues.
|
||||
|
||||
Current white-labeling options are limited. We expose the ability to replace the
|
||||
"Logo" section of the application with a custom "Logo" component. You can do
|
||||
this by adding a `whiteLabelling` key to your
|
||||
this by adding a `whiteLabeling` key to your
|
||||
[configuration file](./configuration.md).
|
||||
|
||||
```js
|
||||
function RadicalImagingLogo() {
|
||||
function RadicalImagingLogo(React) {
|
||||
return React.createElement(
|
||||
'a',
|
||||
{
|
||||
@@ -83,8 +83,8 @@ function RadicalImagingLogo() {
|
||||
);
|
||||
}
|
||||
|
||||
props.whiteLabelling = {
|
||||
logoComponent: RadicalImagingLogo(),
|
||||
props.whiteLabeling = {
|
||||
createLogoComponentFn: RadicalImagingLogo,
|
||||
};
|
||||
```
|
||||
|
||||
|
||||
+17
-12
@@ -20,10 +20,10 @@ abbrev@~1.0.9:
|
||||
resolved "https://registry.yarnpkg.com/abbrev/-/abbrev-1.0.9.tgz#91b4792588a7738c25f35dd6f63752a2f8776135"
|
||||
integrity sha1-kbR5JYinc4wl813W9jdSovh3YTU=
|
||||
|
||||
agent-base@4, agent-base@^4.1.0:
|
||||
version "4.2.1"
|
||||
resolved "https://registry.yarnpkg.com/agent-base/-/agent-base-4.2.1.tgz#d89e5999f797875674c07d87f260fc41e83e8ca9"
|
||||
integrity sha512-JVwXMr9nHYTUXsBFKUqhJwvlcYU/blreOEUkhNR2eXZIvwd+c+o5V4MgDPKWnMS/56awN3TRzIP+KoPn+roQtg==
|
||||
agent-base@4, agent-base@^4.1.0, agent-base@^4.3.0:
|
||||
version "4.3.0"
|
||||
resolved "https://registry.yarnpkg.com/agent-base/-/agent-base-4.3.0.tgz#8165f01c436009bccad0b1d122f05ed770efc6ee"
|
||||
integrity sha512-salcGninV0nPrwpGNn4VTXBb1SOuXQBiqbrNXoeizJsHrsL6ERFM2Ne3JUSBWRE6aeNJI2ROP/WEEIDUiDe3cg==
|
||||
dependencies:
|
||||
es6-promisify "^5.0.0"
|
||||
|
||||
@@ -773,9 +773,9 @@ err-code@^1.0.0:
|
||||
prr "~1.0.1"
|
||||
|
||||
es6-promise@^4.0.3:
|
||||
version "4.2.6"
|
||||
resolved "https://registry.yarnpkg.com/es6-promise/-/es6-promise-4.2.6.tgz#b685edd8258886365ea62b57d30de28fadcd974f"
|
||||
integrity sha512-aRVgGdnmW2OiySVPUC9e6m+plolMAJKjZnQlCwNSuK5yQ0JN61DZSO1X1Ufd1foqWRAlig0rhduTCHe7sVtK5Q==
|
||||
version "4.2.8"
|
||||
resolved "https://registry.yarnpkg.com/es6-promise/-/es6-promise-4.2.8.tgz#4eb21594c972bc40553d276e510539143db53e0a"
|
||||
integrity sha512-HJDGx5daxeIvxdBxvG2cb9g4tEvwIk3i8+nhX0yGrYmZUzbkdg8QbDevheDB8gd0//uPj4c1EQua8Q+MViT0/w==
|
||||
|
||||
es6-promisify@^5.0.0:
|
||||
version "5.0.0"
|
||||
@@ -1289,11 +1289,11 @@ http-signature@~1.2.0:
|
||||
sshpk "^1.7.0"
|
||||
|
||||
https-proxy-agent@^2.1.0:
|
||||
version "2.2.1"
|
||||
resolved "https://registry.yarnpkg.com/https-proxy-agent/-/https-proxy-agent-2.2.1.tgz#51552970fa04d723e04c56d04178c3f92592bbc0"
|
||||
integrity sha512-HPCTS1LW51bcyMYbxUIOO4HEOlQ1/1qRaFWcyxvwaqUS9TY88aoEuHUY33kuAh1YhVVaDQhLZsnPd+XNARWZlQ==
|
||||
version "2.2.4"
|
||||
resolved "https://registry.yarnpkg.com/https-proxy-agent/-/https-proxy-agent-2.2.4.tgz#4ee7a737abd92678a293d9b34a1af4d0d08c787b"
|
||||
integrity sha512-OmvfoQ53WLjtA9HeYP9RNrWMJzzAz1JGaSFr1nijg0PVR1JaD/xbJq1mdEIIlxGpXp9eSe/O2LgU9DJmTPd0Eg==
|
||||
dependencies:
|
||||
agent-base "^4.1.0"
|
||||
agent-base "^4.3.0"
|
||||
debug "^3.1.0"
|
||||
|
||||
humanize-ms@^1.2.1:
|
||||
@@ -1807,11 +1807,16 @@ ms@2.0.0:
|
||||
resolved "https://registry.yarnpkg.com/ms/-/ms-2.0.0.tgz#5608aeadfc00be6c2901df5f9861788de0d597c8"
|
||||
integrity sha1-VgiurfwAvmwpAd9fmGF4jeDVl8g=
|
||||
|
||||
ms@^2.0.0, ms@^2.1.1:
|
||||
ms@^2.0.0:
|
||||
version "2.1.1"
|
||||
resolved "https://registry.yarnpkg.com/ms/-/ms-2.1.1.tgz#30a5864eb3ebb0a66f2ebe6d727af06a09d86e0a"
|
||||
integrity sha512-tgp+dl5cGk28utYktBsrFqA7HKgrhgPsg6Z/EfhWI4gl1Hwq8B/GmY/0oXZ6nF8hDVesS/FpnYaD/kOWhYQvyg==
|
||||
|
||||
ms@^2.1.1:
|
||||
version "2.1.2"
|
||||
resolved "https://registry.yarnpkg.com/ms/-/ms-2.1.2.tgz#d09d1f357b443f493382a8eb3ccd183872ae6009"
|
||||
integrity sha512-sGkPx+VjMtmA6MX27oA4FBFELFCZZ4S4XqeGOXCv68tT+jb3vk/RyaKWP0PTKyWtmLSM0b+adUTEvbs1PEaH2w==
|
||||
|
||||
mute-stream@~0.0.4:
|
||||
version "0.0.8"
|
||||
resolved "https://registry.yarnpkg.com/mute-stream/-/mute-stream-0.0.8.tgz#1630c42b2251ff81e2a283de96a5497ea92e5e0d"
|
||||
|
||||
@@ -3,6 +3,121 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [2.8.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.8.3...@ohif/extension-cornerstone@2.8.4) (2020-07-13)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 - Put guards in all places that a cornerstone re-render ([#1899](https://github.com/OHIF/Viewers/issues/1899)) ([451f7ea](https://github.com/OHIF/Viewers/commit/451f7eab9258e7a193eb362e0926b13aedc4b3c9))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.8.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.8.2...@ohif/extension-cornerstone@2.8.3) (2020-07-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.8.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.8.1...@ohif/extension-cornerstone@2.8.2) (2020-06-15)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Disable seg panel when data for seg unavailable ([#1732](https://github.com/OHIF/Viewers/issues/1732)) ([698e900](https://github.com/OHIF/Viewers/commit/698e900b85121d3c2a46747c443ef69fb7a8c95b)), closes [#1728](https://github.com/OHIF/Viewers/issues/1728)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.8.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.8.0...@ohif/extension-cornerstone@2.8.1) (2020-06-04)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Infinite frame index change when quickly jumping between ([#1734](https://github.com/OHIF/Viewers/issues/1734)) ([a830577](https://github.com/OHIF/Viewers/commit/a8305772d0fbec506549ad7ea08504a8bc3a4f39)), closes [#1733](https://github.com/OHIF/Viewers/issues/1733)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [2.8.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.7.3...@ohif/extension-cornerstone@2.8.0) (2020-06-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 1729 - error boundary wrapper ([#1764](https://github.com/OHIF/Viewers/issues/1764)) ([c02b232](https://github.com/OHIF/Viewers/commit/c02b232b0cc24f38af5d5e3831d987d048e60ada))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.7.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.7.2...@ohif/extension-cornerstone@2.7.3) (2020-05-12)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Fix seg color load ([#1724](https://github.com/OHIF/Viewers/issues/1724)) ([c4f84b1](https://github.com/OHIF/Viewers/commit/c4f84b1174d04ba84d37ed89b6d7ab541be28181))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.7.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.7.1...@ohif/extension-cornerstone@2.7.2) (2020-05-04)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Proper error handling for derived display sets ([#1708](https://github.com/OHIF/Viewers/issues/1708)) ([5b20d8f](https://github.com/OHIF/Viewers/commit/5b20d8f323e4b3ef9988f2f2ab672d697b6da409))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.7.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.7.0...@ohif/extension-cornerstone@2.7.1) (2020-05-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [2.7.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.6.1...@ohif/extension-cornerstone@2.7.0) (2020-04-24)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Seg jump to slice + show/hide ([835f64d](https://github.com/OHIF/Viewers/commit/835f64d47a9994f6a25aaf3941a4974e215e7e7f))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.6.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.6.0...@ohif/extension-cornerstone@2.6.1) (2020-04-23)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Multiframe fix ([#1661](https://github.com/OHIF/Viewers/issues/1661)) ([7120561](https://github.com/OHIF/Viewers/commit/71205618ecb8b592247c5acb32284bfe7e18fce5))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [2.6.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.5.2...@ohif/extension-cornerstone@2.6.0) (2020-04-23)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* configuration to hook into XHR Error handling ([e96205d](https://github.com/OHIF/Viewers/commit/e96205de35e5bec14dc8a9a8509db3dd4e6ecdb6))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.5.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.5.1...@ohif/extension-cornerstone@2.5.2) (2020-04-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone",
|
||||
"version": "2.5.2",
|
||||
"version": "2.8.4",
|
||||
"description": "OHIF extension for Cornerstone",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -34,9 +34,9 @@
|
||||
"@ohif/ui": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-math": "^0.1.8",
|
||||
"cornerstone-tools": "4.12.5",
|
||||
"cornerstone-wado-image-loader": "^3.0.0",
|
||||
"dcmjs": "^0.10.1",
|
||||
"cornerstone-tools": "4.15.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dcmjs": "0.16.0",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"hammerjs": "^2.0.8",
|
||||
"prop-types": "^15.6.2",
|
||||
@@ -51,6 +51,6 @@
|
||||
"classnames": "^2.2.6",
|
||||
"lodash.merge": "^4.6.2",
|
||||
"lodash.throttle": "^4.1.1",
|
||||
"react-cornerstone-viewport": "^2.3.6"
|
||||
"react-cornerstone-viewport": "2.3.9"
|
||||
}
|
||||
}
|
||||
@@ -179,7 +179,7 @@ class OHIFCornerstoneViewport extends Component {
|
||||
|
||||
if (
|
||||
displaySet.displaySetInstanceUID !==
|
||||
prevDisplaySet.displaySetInstanceUID ||
|
||||
prevDisplaySet.displaySetInstanceUID ||
|
||||
displaySet.SOPInstanceUID !== prevDisplaySet.SOPInstanceUID ||
|
||||
displaySet.frameIndex !== prevDisplaySet.frameIndex
|
||||
) {
|
||||
@@ -215,12 +215,28 @@ class OHIFCornerstoneViewport extends Component {
|
||||
});
|
||||
}
|
||||
|
||||
const newImageHandler = ({ currentImageIdIndex, sopInstanceUid }) => {
|
||||
const { displaySet } = this.props.viewportData;
|
||||
const { StudyInstanceUID } = displaySet;
|
||||
|
||||
if (currentImageIdIndex > 0) {
|
||||
this.props.onNewImage({
|
||||
StudyInstanceUID,
|
||||
SOPInstanceUID: sopInstanceUid,
|
||||
frameIndex: currentImageIdIndex,
|
||||
activeViewportIndex: viewportIndex,
|
||||
});
|
||||
}
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
<ConnectedCornerstoneViewport
|
||||
viewportIndex={viewportIndex}
|
||||
imageIds={imageIds}
|
||||
imageIdIndex={currentImageIdIndex}
|
||||
onNewImage={newImageHandler}
|
||||
onNewImageDebounceTime={700}
|
||||
// ~~ Connected (From REDUX)
|
||||
// frameRate={frameRate}
|
||||
// isPlaying={false}
|
||||
|
||||
@@ -10,6 +10,14 @@ const scroll = cornerstoneTools.import('util/scroll');
|
||||
const { studyMetadataManager } = OHIF.utils;
|
||||
const { setViewportSpecificData } = OHIF.redux.actions;
|
||||
|
||||
const refreshCornerstoneViewports = () => {
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
if (enabledElement.image) {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
}
|
||||
});
|
||||
};
|
||||
|
||||
const commandsModule = ({ servicesManager }) => {
|
||||
const actions = {
|
||||
rotateViewport: ({ viewports, rotation }) => {
|
||||
@@ -180,10 +188,7 @@ const commandsModule = ({ servicesManager }) => {
|
||||
|
||||
measurementApi.syncMeasurementsAndToolData();
|
||||
|
||||
// Update images in all active viewports
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
});
|
||||
refreshCornerstoneViewports();
|
||||
},
|
||||
getNearbyToolData({ element, canvasCoordinates, availableToolTypes }) {
|
||||
const nearbyTool = {};
|
||||
@@ -262,23 +267,26 @@ const commandsModule = ({ servicesManager }) => {
|
||||
StudyInstanceUID,
|
||||
SOPInstanceUID,
|
||||
frameIndex,
|
||||
activeViewportIndex
|
||||
activeViewportIndex,
|
||||
}) => {
|
||||
const study = studyMetadataManager.get(StudyInstanceUID);
|
||||
|
||||
const displaySet = study.findDisplaySet(ds => {
|
||||
return ds.images.find(i => i.getSOPInstanceUID() === SOPInstanceUID)
|
||||
return (
|
||||
ds.images &&
|
||||
ds.images.find(i => i.getSOPInstanceUID() === SOPInstanceUID)
|
||||
);
|
||||
});
|
||||
|
||||
displaySet.SOPInstanceUID = SOPInstanceUID;
|
||||
displaySet.frameIndex = frameIndex;
|
||||
|
||||
window.store.dispatch(setViewportSpecificData(activeViewportIndex, displaySet));
|
||||
window.store.dispatch(
|
||||
setViewportSpecificData(activeViewportIndex, displaySet)
|
||||
);
|
||||
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
});
|
||||
}
|
||||
refreshCornerstoneViewports();
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
|
||||
@@ -34,8 +34,17 @@ export default {
|
||||
preRegistration({ servicesManager, configuration = {} }) {
|
||||
init({ servicesManager, configuration });
|
||||
},
|
||||
getViewportModule() {
|
||||
return OHIFCornerstoneViewport;
|
||||
getViewportModule({ commandsManager }) {
|
||||
const ExtendedOHIFCornerstoneViewport = props => {
|
||||
const onNewImageHandler = jumpData => {
|
||||
commandsManager.runCommand('jumpToImage', jumpData);
|
||||
};
|
||||
return (
|
||||
<OHIFCornerstoneViewport {...props} onNewImage={onNewImageHandler} />
|
||||
);
|
||||
};
|
||||
|
||||
return ExtendedOHIFCornerstoneViewport;
|
||||
},
|
||||
getToolbarModule() {
|
||||
return toolbarModule;
|
||||
|
||||
@@ -2,6 +2,9 @@ import Hammer from 'hammerjs';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import cornerstoneMath from 'cornerstone-math';
|
||||
import cornerstoneTools from 'cornerstone-tools';
|
||||
import OHIF from '@ohif/core';
|
||||
|
||||
const { log } = OHIF;
|
||||
|
||||
export default function(configuration = {}) {
|
||||
// For debugging
|
||||
@@ -12,6 +15,13 @@ export default function(configuration = {}) {
|
||||
cornerstoneTools.external.cornerstoneMath = cornerstoneMath;
|
||||
cornerstoneTools.init(configuration);
|
||||
|
||||
cornerstoneTools.loadHandlerManager.setErrorLoadingHandler(
|
||||
(element, imageId, error) => {
|
||||
log.error(imageId);
|
||||
throw error;
|
||||
}
|
||||
);
|
||||
|
||||
// Set the tool font and font size
|
||||
// context.font = "[style] [variant] [weight] [size]/[line height] [font family]";
|
||||
const fontFamily =
|
||||
|
||||
@@ -3,6 +3,55 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.2.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.2.3...@ohif/extension-dicom-html@1.2.4) (2020-07-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.2.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.2.2...@ohif/extension-dicom-html@1.2.3) (2020-06-15)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Disable seg panel when data for seg unavailable ([#1732](https://github.com/OHIF/Viewers/issues/1732)) ([698e900](https://github.com/OHIF/Viewers/commit/698e900b85121d3c2a46747c443ef69fb7a8c95b)), closes [#1728](https://github.com/OHIF/Viewers/issues/1728)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.2.1...@ohif/extension-dicom-html@1.2.2) (2020-05-04)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Proper error handling for derived display sets ([#1708](https://github.com/OHIF/Viewers/issues/1708)) ([5b20d8f](https://github.com/OHIF/Viewers/commit/5b20d8f323e4b3ef9988f2f2ab672d697b6da409))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.2.0...@ohif/extension-dicom-html@1.2.1) (2020-04-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.2.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.1.2...@ohif/extension-dicom-html@1.2.0) (2020-04-24)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Seg jump to slice + show/hide ([835f64d](https://github.com/OHIF/Viewers/commit/835f64d47a9994f6a25aaf3941a4974e215e7e7f))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.1.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.1.1...@ohif/extension-dicom-html@1.1.2) (2020-04-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-html",
|
||||
"version": "1.1.2",
|
||||
"version": "1.2.4",
|
||||
"description": "OHIF extension for rendering structured reports to HTML",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -29,7 +29,7 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"dcmjs": "^0.10.1",
|
||||
"dcmjs": "0.16.0",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
import React, { Component } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import * as dcmjs from 'dcmjs';
|
||||
import dcmjs from 'dcmjs';
|
||||
import TypedArrayProp from './TypedArrayProp';
|
||||
|
||||
import './DicomHtmlViewport.css';
|
||||
|
||||
@@ -3,6 +3,17 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
# [0.51.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.9...@ohif/extension-dicom-microscopy@0.51.0) (2020-06-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 1729 - error boundary wrapper ([#1764](https://github.com/OHIF/Viewers/issues/1764)) ([c02b232](https://github.com/OHIF/Viewers/commit/c02b232b0cc24f38af5d5e3831d987d048e60ada))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.8...@ohif/extension-dicom-microscopy@0.50.9) (2020-04-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-microscopy",
|
||||
"version": "0.50.9",
|
||||
"version": "0.51.0",
|
||||
"description": "OHIF extension for Dicom Microscopy",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -92,8 +92,8 @@ class DicomMicroscopyViewport extends Component {
|
||||
{this.state.error ? (
|
||||
<h2>{JSON.stringify(this.state.error)}</h2>
|
||||
) : (
|
||||
<div style={style} ref={this.container} />
|
||||
)}
|
||||
<div style={style} ref={this.container} />
|
||||
)}
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
@@ -0,0 +1,8 @@
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
return webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
|
||||
};
|
||||
@@ -0,0 +1,38 @@
|
||||
const merge = require('webpack-merge');
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
|
||||
const pkg = require('./../package.json');
|
||||
|
||||
const ROOT_DIR = path.join(__dirname, './..');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
const commonConfig = webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
|
||||
|
||||
return merge(commonConfig, {
|
||||
devtool: 'source-map',
|
||||
stats: {
|
||||
colors: true,
|
||||
hash: true,
|
||||
timings: true,
|
||||
assets: true,
|
||||
chunks: false,
|
||||
chunkModules: false,
|
||||
modules: false,
|
||||
children: false,
|
||||
warnings: true,
|
||||
},
|
||||
optimization: {
|
||||
minimize: true,
|
||||
sideEffects: true,
|
||||
},
|
||||
output: {
|
||||
path: ROOT_DIR,
|
||||
library: 'OHIFExtDicomP10Downloader',
|
||||
libraryTarget: 'umd',
|
||||
libraryExport: 'default',
|
||||
filename: pkg.main,
|
||||
},
|
||||
});
|
||||
};
|
||||
@@ -0,0 +1,44 @@
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.1.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-p10-downloader@0.1.1...@ohif/extension-dicom-p10-downloader@0.1.2) (2020-06-18)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-p10-downloader
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-p10-downloader@0.1.0...@ohif/extension-dicom-p10-downloader@0.1.1) (2020-06-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-p10-downloader
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.1.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-p10-downloader@0.0.2...@ohif/extension-dicom-p10-downloader@0.1.0) (2020-04-23)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* configuration to hook into XHR Error handling ([e96205d](https://github.com/OHIF/Viewers/commit/e96205de35e5bec14dc8a9a8509db3dd4e6ecdb6))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## 0.0.2 (2020-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-p10-downloader
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file. See
|
||||
[Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
@@ -0,0 +1,21 @@
|
||||
MIT License
|
||||
|
||||
Copyright (c) 2018 Open Health Imaging Foundation
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||
of this software and associated documentation files (the "Software"), to deal
|
||||
in the Software without restriction, including without limitation the rights
|
||||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||
copies of the Software, and to permit persons to whom the Software is
|
||||
furnished to do so, subject to the following conditions:
|
||||
|
||||
The above copyright notice and this permission notice shall be included in all
|
||||
copies or substantial portions of the Software.
|
||||
|
||||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
||||
SOFTWARE.
|
||||
@@ -0,0 +1 @@
|
||||
# @ohif/extension-dicom-p10-downloader
|
||||
@@ -0,0 +1,40 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-p10-downloader",
|
||||
"version": "0.1.2",
|
||||
"description": "OHIF extension for downloading DICOM P10 files",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
"repository": "OHIF/Viewers",
|
||||
"main": "dist/index.umd.js",
|
||||
"module": "src/index.js",
|
||||
"publishConfig": {
|
||||
"access": "public"
|
||||
},
|
||||
"engines": {
|
||||
"node": ">=10",
|
||||
"npm": ">=6",
|
||||
"yarn": ">=1.16.0"
|
||||
},
|
||||
"files": [
|
||||
"dist",
|
||||
"README.md"
|
||||
],
|
||||
"scripts": {
|
||||
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
|
||||
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
|
||||
"build:package": "yarn run build",
|
||||
"prepublishOnly": "yarn run build",
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^2.6.0",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"dicomweb-client": "^0.5.2"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"dicomweb-client": "^0.6.0",
|
||||
"file-saver": "^2.0.2",
|
||||
"jszip": "^3.2.2"
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,145 @@
|
||||
import OHIF from '@ohif/core';
|
||||
import {
|
||||
save,
|
||||
upload,
|
||||
getDicomWebClientFromContext,
|
||||
getStudyInstanceUIDFromStudies,
|
||||
getSOPInstanceReferenceFromActiveViewport,
|
||||
getSOPInstanceReferencesFromViewports,
|
||||
} from './utils';
|
||||
import _downloadAndZip, { downloadInstances } from './downloadAndZip';
|
||||
|
||||
const {
|
||||
utils: { Queue },
|
||||
} = OHIF;
|
||||
|
||||
export function getCommands(context) {
|
||||
const queue = new Queue(1);
|
||||
const actions = {
|
||||
/**
|
||||
* @example Running this command using Commands Manager
|
||||
* commandsManager.runCommand(
|
||||
* 'downloadAndZip',
|
||||
* {
|
||||
* listOfUIDs: [...],
|
||||
* options: {
|
||||
* progress(status) {
|
||||
* console.info('Progress:', (status.progress * 100).toFixed(2) + '%');
|
||||
* }
|
||||
* }
|
||||
* },
|
||||
* 'VIEWER'
|
||||
* );
|
||||
*/
|
||||
downloadAndZip({ servers, dicomWebClient, listOfUIDs, options }) {
|
||||
return save(
|
||||
_downloadAndZip(
|
||||
dicomWebClient || getDicomWebClientFromContext(context, servers),
|
||||
listOfUIDs,
|
||||
options
|
||||
),
|
||||
listOfUIDs
|
||||
);
|
||||
},
|
||||
downloadAndZipStudy({ servers, studies, progress }) {
|
||||
const dicomWebClient = getDicomWebClientFromContext(context, servers);
|
||||
const listOfUIDs = getStudyInstanceUIDFromStudies(studies);
|
||||
return save(
|
||||
_downloadAndZip(dicomWebClient, listOfUIDs, { progress }),
|
||||
listOfUIDs
|
||||
);
|
||||
},
|
||||
downloadAndZipSeriesOnViewports({ servers, viewports, progress }) {
|
||||
const dicomWebClient = getDicomWebClientFromContext(context, servers);
|
||||
const listOfUIDs = getSOPInstanceReferencesFromViewports(viewports);
|
||||
return save(
|
||||
_downloadAndZip(dicomWebClient, listOfUIDs, { progress }),
|
||||
listOfUIDs
|
||||
);
|
||||
},
|
||||
downloadAndZipSeriesOnActiveViewport({ servers, viewports, progress }) {
|
||||
const dicomWebClient = getDicomWebClientFromContext(context, servers);
|
||||
const listOfUIDs = getSOPInstanceReferenceFromActiveViewport(viewports);
|
||||
return save(
|
||||
_downloadAndZip(dicomWebClient, listOfUIDs, { progress }),
|
||||
listOfUIDs
|
||||
);
|
||||
},
|
||||
downloadAndUploadStudy({ servers, studies, progress, serverConfig }) {
|
||||
const dicomWebClient = getDicomWebClientFromContext(context, servers);
|
||||
const listOfUIDs = getStudyInstanceUIDFromStudies(studies);
|
||||
return upload(
|
||||
downloadInstances(dicomWebClient, listOfUIDs, { progress }),
|
||||
/**
|
||||
* serverConfig is an object with the values used to create a new
|
||||
* instance of DICOMwebClient.
|
||||
*
|
||||
* Basic Structure:
|
||||
*
|
||||
* const config = {
|
||||
* url,
|
||||
* headers,
|
||||
* errorInterceptor
|
||||
* }
|
||||
*
|
||||
* const dicomWeb = new api.DICOMwebClient(config);
|
||||
*/
|
||||
serverConfig
|
||||
);
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
downloadAndZip: {
|
||||
commandFn: queue.bindSafe(actions.downloadAndZip, error),
|
||||
storeContexts: ['servers'],
|
||||
},
|
||||
downloadAndZipStudy: {
|
||||
commandFn: queue.bindSafe(actions.downloadAndZipStudy, error),
|
||||
storeContexts: ['servers', 'studies'],
|
||||
options: { progress },
|
||||
},
|
||||
downloadAndZipSeriesOnViewports: {
|
||||
commandFn: queue.bindSafe(actions.downloadAndZipSeriesOnViewports, error),
|
||||
storeContexts: ['servers', 'viewports'],
|
||||
options: { progress },
|
||||
},
|
||||
downloadAndZipSeriesOnActiveViewport: {
|
||||
commandFn: queue.bindSafe(
|
||||
actions.downloadAndZipSeriesOnActiveViewport,
|
||||
error
|
||||
),
|
||||
storeContexts: ['servers', 'viewports'],
|
||||
options: { progress },
|
||||
},
|
||||
downloadAndUploadStudy: {
|
||||
commandFn: queue.bindSafe(actions.downloadAndUploadStudy, error),
|
||||
storeContexts: ['servers', 'studies'],
|
||||
options: { progress },
|
||||
},
|
||||
};
|
||||
|
||||
return {
|
||||
actions,
|
||||
definitions,
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
* Utils
|
||||
*/
|
||||
|
||||
function progress(status) {
|
||||
OHIF.log.info(
|
||||
'Download and Zip Progress:',
|
||||
(status.progress * 100.0).toFixed(2) + '%'
|
||||
);
|
||||
}
|
||||
|
||||
function error(e) {
|
||||
if (e.message === 'Queue limit reached') {
|
||||
OHIF.log.warn('A download is already in progress, please wait.');
|
||||
} else {
|
||||
OHIF.log.error(e);
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,259 @@
|
||||
import OHIF from '@ohif/core';
|
||||
import { api } from 'dicomweb-client';
|
||||
import dicomParser from 'dicom-parser';
|
||||
import JSZip from 'jszip';
|
||||
|
||||
/**
|
||||
* Constants
|
||||
*/
|
||||
|
||||
const {
|
||||
utils: {
|
||||
isDicomUid,
|
||||
hierarchicalListUtils,
|
||||
progressTrackingUtils: progressUtils,
|
||||
},
|
||||
} = OHIF;
|
||||
|
||||
/**
|
||||
* Public Methods
|
||||
*/
|
||||
|
||||
/**
|
||||
* Download and Zip all DICOM P10 instances from specified DICOM Web Client
|
||||
* based on an hierarchical list of UIDs;
|
||||
*
|
||||
* @param {DICOMwebClient} dicomWebClient A DICOMwebClient instance through
|
||||
* which the referenced instances will be retrieved;
|
||||
* @param {Array} listOfUIDs The hierarchical list of UIDs from the instances
|
||||
* that should be retrieved:
|
||||
* A hierarchical list of UIDs is a regular JS Array where the type of the UID
|
||||
* (study, series, instance) is determined by its nasting lavel. For example:
|
||||
* @ The following list instructs the library to download all the instances
|
||||
* from both studies "A" and "B":
|
||||
*
|
||||
* ['studyUIDFromA', 'studyUIDFromB']
|
||||
*
|
||||
* @ In the previous example both UIDs are treated as STUDY UIDs because both
|
||||
* of them are listed in the same (top) level of the list. If, on the other
|
||||
* hand, only instances from series "I" and "J" from the study "B"
|
||||
* are to be downloaded, the expected hierarchical list would be:
|
||||
*
|
||||
* ['studyUIDFromA', ['studyUIDFromB', ['seriesUIDFromI', 'seriesUIDFromJ']]]
|
||||
*
|
||||
* @ Which, when prettified, reads like this:
|
||||
*
|
||||
* [
|
||||
* 'studyUIDFromA',
|
||||
* ['studyUIDFromB', [
|
||||
* 'seriesUIDFromI',
|
||||
* 'seriesUIDFromJ'
|
||||
* ]]
|
||||
* ]
|
||||
*
|
||||
* @ Furthermore, if only instances "X", "Y" and "Z" from series "J" need to
|
||||
* be downloaded (instead of all the instances from that series), the list
|
||||
* could be changed to:
|
||||
*
|
||||
* [
|
||||
* 'studyUIDFromA',
|
||||
* ['studyUIDFromB', [
|
||||
* 'seriesUIDFromI',
|
||||
* ['seriesUIDFromJ', [
|
||||
* 'instanceUIDFromX',
|
||||
* 'instanceUIDFromY',
|
||||
* 'instanceUIDFromZ'
|
||||
* ]]
|
||||
* ]]
|
||||
* ]
|
||||
*
|
||||
* Please refer to hierarchicalListUtils.js for more information and utilities;
|
||||
*
|
||||
* @param {Object} options A plain object with options;
|
||||
* @param {function} options.progress A callback to retrieve notifications
|
||||
* @returns {Promise} A promise that resolves to an URL from which the ZIP file
|
||||
* can be downloaded;
|
||||
*/
|
||||
|
||||
async function downloadAndZip(dicomWebClient, listOfUIDs, options) {
|
||||
if (dicomWebClient instanceof api.DICOMwebClient) {
|
||||
const settings = buildSettings(listOfUIDs, options);
|
||||
const { compression } = settings.tasks;
|
||||
const buffers = await downloadBuffers(settings, dicomWebClient);
|
||||
compression.deferred.resolve(zipAll(buffers, settings));
|
||||
const url = await compression.deferred.promise;
|
||||
return url;
|
||||
}
|
||||
throw new Error('A valid DICOM Web Client instance is expected');
|
||||
}
|
||||
|
||||
async function downloadInstances(dicomWebClient, listOfUIDs, options) {
|
||||
if (dicomWebClient instanceof api.DICOMwebClient) {
|
||||
const settings = buildSettings(listOfUIDs, options);
|
||||
const buffers = await downloadBuffers(settings, dicomWebClient);
|
||||
return buffers;
|
||||
}
|
||||
throw new Error('A valid DICOM Web Client instance is expected');
|
||||
}
|
||||
|
||||
async function downloadBuffers(settings, dicomWebClient) {
|
||||
const { compression } = settings.tasks;
|
||||
// Register user-provided progress handler as a task list observer
|
||||
progressUtils.addObserver(settings.taskList, settings.options.progress);
|
||||
const buffers = await downloadAll(dicomWebClient, settings).catch(error => {
|
||||
// Reject promise from compression task on download failure
|
||||
compression.deferred.reject(error);
|
||||
throw error;
|
||||
});
|
||||
return buffers;
|
||||
}
|
||||
|
||||
/**
|
||||
* Utils
|
||||
*/
|
||||
|
||||
async function zipAll(buffers, settings) {
|
||||
const zip = new JSZip();
|
||||
OHIF.log.info('Adding DICOM P10 files to archive:', buffers.length);
|
||||
buffers.forEach((buffer, i) => {
|
||||
const path = buildPath(buffer) || `${i}.dcm`;
|
||||
zip.file(path, buffer);
|
||||
});
|
||||
// Set compression task progress to 50%
|
||||
progressUtils.update(settings.tasks.compression.task, 0.5);
|
||||
const blob = await zip.generateAsync({ type: 'blob' });
|
||||
return URL.createObjectURL(blob);
|
||||
}
|
||||
|
||||
function buildSettings(listOfUIDs, options) {
|
||||
const taskList = progressUtils.createList();
|
||||
const compression = progressUtils.addDeferred(taskList);
|
||||
const downloads = [];
|
||||
|
||||
// Build downloads list
|
||||
hierarchicalListUtils.forEach(
|
||||
listOfUIDs,
|
||||
(StudyInstanceUID, SeriesInstanceUID, SOPInstanceUID) => {
|
||||
if (isDicomUid(StudyInstanceUID)) {
|
||||
downloads.push({
|
||||
tracking: progressUtils.addDeferred(taskList),
|
||||
parameters: [StudyInstanceUID, SeriesInstanceUID, SOPInstanceUID],
|
||||
});
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
// Print tree of hierarchical references
|
||||
OHIF.log.info('Downloading DICOM P10 files for references:');
|
||||
OHIF.log.info(hierarchicalListUtils.print(listOfUIDs));
|
||||
|
||||
return {
|
||||
options: Object(options),
|
||||
taskList,
|
||||
tasks: {
|
||||
downloads,
|
||||
compression,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
function buildPath(buffer) {
|
||||
let path;
|
||||
try {
|
||||
const byteArray = new Uint8Array(buffer);
|
||||
const dataSet = dicomParser.parseDicom(byteArray, {
|
||||
// Stop parsing after SeriesInstanceUID is found
|
||||
untilTag: 'x0020000e',
|
||||
});
|
||||
const StudyInstanceUID = dataSet.string('x0020000d');
|
||||
const SeriesInstanceUID = dataSet.string('x0020000e');
|
||||
const SOPInstanceUID = dataSet.string('x00080018');
|
||||
if (StudyInstanceUID && SeriesInstanceUID && SOPInstanceUID) {
|
||||
path = `${StudyInstanceUID}/${SeriesInstanceUID}/${SOPInstanceUID}.dcm`;
|
||||
}
|
||||
} catch (e) {
|
||||
OHIF.log.error('Error parsing downloaded DICOM P10 file...', e);
|
||||
}
|
||||
return path;
|
||||
}
|
||||
|
||||
async function downloadAll(dicomWebClient, settings) {
|
||||
const { downloads } = settings.tasks;
|
||||
|
||||
// Make sure at least one download was initiated
|
||||
if (downloads.length < 1) {
|
||||
throw new Error('No valid reference to be downloaded');
|
||||
}
|
||||
|
||||
const promises = downloads.map(item => {
|
||||
const {
|
||||
parameters,
|
||||
tracking: { deferred, task },
|
||||
} = item;
|
||||
deferred.resolve(download(task, dicomWebClient, ...parameters));
|
||||
return deferred.promise;
|
||||
});
|
||||
|
||||
// Wait on created download promises
|
||||
return Promise.all(promises).then(results => {
|
||||
const buffers = [];
|
||||
// The "results" array may directly contain buffers (ArrayBuffer instances)
|
||||
// or arrays of buffers, depending on the type of downloads initiated on the
|
||||
// previous step (retrieveStudy, retrieveSeries or retrieveinstance). Ex:
|
||||
// results = [buf1, [buf2, buf3], buf4, [buf5], ...];
|
||||
results.forEach(
|
||||
function select(nesting, result) {
|
||||
if (result instanceof ArrayBuffer) {
|
||||
buffers.push(result);
|
||||
} else if (nesting && Array.isArray(result)) {
|
||||
// "nesting" argument is important to make sure only two levels
|
||||
// of arrays are visited. For example, "bufX" should not be visited:
|
||||
// [buf1, [buf2, buf3, [bufX]], buf4, [buf5], ...];
|
||||
result.forEach(select.bind(null, false));
|
||||
}
|
||||
}.bind(null, true)
|
||||
);
|
||||
return buffers;
|
||||
});
|
||||
}
|
||||
|
||||
async function download(
|
||||
task,
|
||||
dicomWebClient,
|
||||
studyInstanceUID,
|
||||
seriesInstanceUID,
|
||||
sopInstanceUID
|
||||
) {
|
||||
// Strict DICOM-formatted variable names COULDN'T be used here because the
|
||||
// DICOM Web client interface expects them in this specific format.
|
||||
// @TODO: Add support for download progress handler which will use the
|
||||
// currently not use "task" param
|
||||
if (!isDicomUid(studyInstanceUID)) {
|
||||
throw new Error('Download requires at least a "StudyInstanceUID" property');
|
||||
}
|
||||
if (!isDicomUid(seriesInstanceUID)) {
|
||||
// Download entire study
|
||||
return dicomWebClient.retrieveStudy({
|
||||
studyInstanceUID,
|
||||
});
|
||||
}
|
||||
if (!isDicomUid(sopInstanceUID)) {
|
||||
// Download entire series
|
||||
return dicomWebClient.retrieveSeries({
|
||||
studyInstanceUID,
|
||||
seriesInstanceUID,
|
||||
});
|
||||
}
|
||||
// Download specific instance
|
||||
return dicomWebClient.retrieveInstance({
|
||||
studyInstanceUID,
|
||||
seriesInstanceUID,
|
||||
sopInstanceUID,
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Exports
|
||||
*/
|
||||
|
||||
export { downloadAndZip as default, downloadAndZip, downloadInstances };
|
||||
@@ -0,0 +1,43 @@
|
||||
import { getDicomWebClientFromConfig } from './utils';
|
||||
import { getCommands } from './commandsModule';
|
||||
|
||||
/**
|
||||
* Constants
|
||||
*/
|
||||
|
||||
/**
|
||||
* Globals
|
||||
*/
|
||||
|
||||
const sharedContext = {
|
||||
dicomWebClient: null,
|
||||
};
|
||||
|
||||
/**
|
||||
* Extension
|
||||
*/
|
||||
export default {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'dicom-p10-downloader',
|
||||
|
||||
/**
|
||||
* LIFECYCLE HOOKS
|
||||
*/
|
||||
|
||||
preRegistration({ appConfig }) {
|
||||
const dicomWebClient = getDicomWebClientFromConfig(appConfig);
|
||||
if (dicomWebClient) {
|
||||
sharedContext.dicomWebClient = dicomWebClient;
|
||||
}
|
||||
},
|
||||
|
||||
/**
|
||||
* MODULE GETTERS
|
||||
*/
|
||||
|
||||
getCommandsModule() {
|
||||
return getCommands(sharedContext);
|
||||
},
|
||||
};
|
||||
@@ -0,0 +1,158 @@
|
||||
import OHIF from '@ohif/core';
|
||||
import { api } from 'dicomweb-client';
|
||||
import { saveAs } from 'file-saver';
|
||||
|
||||
const {
|
||||
utils: { isDicomUid, resolveObjectPath, hierarchicalListUtils },
|
||||
DICOMWeb,
|
||||
} = OHIF;
|
||||
|
||||
function validDicomUid(subject) {
|
||||
if (isDicomUid(subject)) {
|
||||
return subject;
|
||||
}
|
||||
}
|
||||
|
||||
function getActiveServerFromServersStore(store) {
|
||||
const servers = resolveObjectPath(store, 'servers');
|
||||
if (Array.isArray(servers) && servers.length > 0) {
|
||||
return servers.find(server => resolveObjectPath(server, 'active') === true);
|
||||
}
|
||||
}
|
||||
|
||||
function getDicomWebClientFromConfig(config) {
|
||||
const servers = resolveObjectPath(config, 'servers.dicomWeb');
|
||||
if (Array.isArray(servers) && servers.length > 0) {
|
||||
const server = servers[0];
|
||||
return new api.DICOMwebClient({
|
||||
url: server.wadoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
function getDicomWebClientFromContext(context, store) {
|
||||
const activeServer = getActiveServerFromServersStore(store);
|
||||
if (activeServer) {
|
||||
return new api.DICOMwebClient({
|
||||
url: activeServer.wadoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(activeServer),
|
||||
});
|
||||
} else if (context.dicomWebClient instanceof api.DICOMwebClient) {
|
||||
return context.dicomWebClient;
|
||||
}
|
||||
}
|
||||
|
||||
function getSOPInstanceReference(viewports, index) {
|
||||
if (index >= 0) {
|
||||
const { StudyInstanceUID, SeriesInstanceUID, SOPInstanceUID } = Object(
|
||||
resolveObjectPath(viewports, `viewportSpecificData.${index}`)
|
||||
);
|
||||
return Object.freeze(
|
||||
hierarchicalListUtils.addToList(
|
||||
[],
|
||||
validDicomUid(StudyInstanceUID),
|
||||
validDicomUid(SeriesInstanceUID),
|
||||
validDicomUid(SOPInstanceUID)
|
||||
)
|
||||
);
|
||||
}
|
||||
}
|
||||
|
||||
function getSOPInstanceReferenceFromActiveViewport(viewports) {
|
||||
return getSOPInstanceReference(
|
||||
viewports,
|
||||
resolveObjectPath(viewports, 'activeViewportIndex')
|
||||
);
|
||||
}
|
||||
|
||||
function getSOPInstanceReferencesFromViewports(viewports) {
|
||||
const list = [];
|
||||
const viewportSpecificData = resolveObjectPath(
|
||||
viewports,
|
||||
'viewportSpecificData'
|
||||
);
|
||||
Object.keys(viewportSpecificData).forEach(index => {
|
||||
const { StudyInstanceUID, SeriesInstanceUID, SOPInstanceUID } = Object(
|
||||
viewportSpecificData[index]
|
||||
);
|
||||
hierarchicalListUtils.addToList(
|
||||
list,
|
||||
validDicomUid(StudyInstanceUID),
|
||||
validDicomUid(SeriesInstanceUID),
|
||||
validDicomUid(SOPInstanceUID)
|
||||
);
|
||||
});
|
||||
return list;
|
||||
}
|
||||
|
||||
function save(promise, listOfUIDs) {
|
||||
return Promise.resolve(promise)
|
||||
.then(url => {
|
||||
OHIF.log.info('Files successfully compressed:', url);
|
||||
const StudyInstanceUID = hierarchicalListUtils.getItem(listOfUIDs, 0);
|
||||
saveAs(url, `${StudyInstanceUID}.zip`);
|
||||
return url;
|
||||
})
|
||||
.catch(error => {
|
||||
OHIF.log.error('Failed to create Zip file...', error);
|
||||
return null;
|
||||
});
|
||||
}
|
||||
|
||||
function upload(promise, serverConfig) {
|
||||
return Promise.resolve(promise)
|
||||
.then(async instances => {
|
||||
const instancesAmount = instances.length;
|
||||
OHIF.log.info(`Uploading study to ${serverConfig.url}`);
|
||||
OHIF.log.info(
|
||||
`${instancesAmount} instances are being uploaded. Don't close your browser.`
|
||||
);
|
||||
|
||||
try {
|
||||
const dicomWeb = new api.DICOMwebClient(serverConfig);
|
||||
let progress = 0;
|
||||
|
||||
const getProgress = () => {
|
||||
return ((progress * 100) / instancesAmount).toFixed();
|
||||
};
|
||||
|
||||
for (const instance of instances) {
|
||||
const options = {
|
||||
datasets: [instance],
|
||||
};
|
||||
|
||||
await dicomWeb.storeInstances(options);
|
||||
|
||||
progress++;
|
||||
|
||||
OHIF.log.info(`Progress: ${getProgress()}%`);
|
||||
}
|
||||
|
||||
OHIF.log.info('Successfully uploaded!');
|
||||
} catch (error) {
|
||||
OHIF.log.error(`Failed to upload: ${error}`);
|
||||
}
|
||||
|
||||
return instances;
|
||||
})
|
||||
.catch(error => {
|
||||
OHIF.log.error(`Failed to upload: ${error}`);
|
||||
return null;
|
||||
});
|
||||
}
|
||||
|
||||
function getStudyInstanceUIDFromStudies(studies) {
|
||||
return Object.keys(Object(Object(studies).studyData)).slice(0, 1);
|
||||
}
|
||||
|
||||
export {
|
||||
save,
|
||||
upload,
|
||||
validDicomUid,
|
||||
getDicomWebClientFromConfig,
|
||||
getDicomWebClientFromContext,
|
||||
getStudyInstanceUIDFromStudies,
|
||||
getSOPInstanceReferenceFromActiveViewport,
|
||||
getSOPInstanceReferencesFromViewports,
|
||||
};
|
||||
@@ -3,6 +3,118 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.2.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.4...@ohif/extension-dicom-rt@0.2.5) (2020-07-13)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 - Put guards in all places that a cornerstone re-render ([#1899](https://github.com/OHIF/Viewers/issues/1899)) ([451f7ea](https://github.com/OHIF/Viewers/commit/451f7eab9258e7a193eb362e0926b13aedc4b3c9))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.3...@ohif/extension-dicom-rt@0.2.4) (2020-07-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.2...@ohif/extension-dicom-rt@0.2.3) (2020-07-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.1...@ohif/extension-dicom-rt@0.2.2) (2020-07-13)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Fix RT Panel hide/show and Fix looping load errors ([#1877](https://github.com/OHIF/Viewers/issues/1877)) ([e7cc735](https://github.com/OHIF/Viewers/commit/e7cc735c03d02eeb0d3af4ba02c15ed4f81bbec2))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.0...@ohif/extension-dicom-rt@0.2.1) (2020-06-15)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Disable seg panel when data for seg unavailable ([#1732](https://github.com/OHIF/Viewers/issues/1732)) ([698e900](https://github.com/OHIF/Viewers/commit/698e900b85121d3c2a46747c443ef69fb7a8c95b)), closes [#1728](https://github.com/OHIF/Viewers/issues/1728)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.2.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.1.4...@ohif/extension-dicom-rt@0.2.0) (2020-06-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 1729 - error boundary wrapper ([#1764](https://github.com/OHIF/Viewers/issues/1764)) ([c02b232](https://github.com/OHIF/Viewers/commit/c02b232b0cc24f38af5d5e3831d987d048e60ada))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.1.3...@ohif/extension-dicom-rt@0.1.4) (2020-05-14)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Load default display set when no time metadata ([#1684](https://github.com/OHIF/Viewers/issues/1684)) ([f7b8b6a](https://github.com/OHIF/Viewers/commit/f7b8b6a41c4626084ef56b0fdf7363e914b143c4)), closes [#1683](https://github.com/OHIF/Viewers/issues/1683)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.1.2...@ohif/extension-dicom-rt@0.1.3) (2020-05-12)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Fix seg color load ([#1724](https://github.com/OHIF/Viewers/issues/1724)) ([c4f84b1](https://github.com/OHIF/Viewers/commit/c4f84b1174d04ba84d37ed89b6d7ab541be28181))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.1.1...@ohif/extension-dicom-rt@0.1.2) (2020-05-04)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Proper error handling for derived display sets ([#1708](https://github.com/OHIF/Viewers/issues/1708)) ([5b20d8f](https://github.com/OHIF/Viewers/commit/5b20d8f323e4b3ef9988f2f2ab672d697b6da409))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.1.0...@ohif/extension-dicom-rt@0.1.1) (2020-04-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.1.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.0.2...@ohif/extension-dicom-rt@0.1.0) (2020-04-24)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Seg jump to slice + show/hide ([835f64d](https://github.com/OHIF/Viewers/commit/835f64d47a9994f6a25aaf3941a4974e215e7e7f))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## 0.0.2 (2020-04-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-rt",
|
||||
"version": "0.0.2",
|
||||
"version": "0.2.5",
|
||||
"description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -30,8 +30,8 @@
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.0.9",
|
||||
"dcmjs": "^0.8.3",
|
||||
"cornerstone-tools": "4.15.1",
|
||||
"dcmjs": "0.16.0",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
|
||||
@@ -14,7 +14,7 @@ const OHIFDicomRTStructSopClassHandler = {
|
||||
id: 'OHIFDicomRTStructSopClassHandler',
|
||||
type: MODULE_TYPES.SOP_CLASS_HANDLER,
|
||||
sopClassUIDs,
|
||||
getDisplaySetFromSeries: function (
|
||||
getDisplaySetFromSeries: function(
|
||||
series,
|
||||
study,
|
||||
dicomWebClient,
|
||||
@@ -67,13 +67,14 @@ const OHIFDicomRTStructSopClassHandler = {
|
||||
}
|
||||
}
|
||||
|
||||
rtStructDisplaySet.load = function (referencedDisplaySet, studies) {
|
||||
rtStructDisplaySet.load = function(referencedDisplaySet, studies) {
|
||||
return loadRTStruct(
|
||||
rtStructDisplaySet,
|
||||
referencedDisplaySet,
|
||||
studies
|
||||
).catch(error => {
|
||||
rtStructDisplaySet.isLoaded = false;
|
||||
rtStructDisplaySet.loadError = true;
|
||||
throw new Error(error);
|
||||
});
|
||||
};
|
||||
|
||||
@@ -17,7 +17,10 @@ const { studyMetadataManager } = utils;
|
||||
|
||||
const refreshViewport = () => {
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
debugger;
|
||||
if (enabledElement.image) {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
}
|
||||
});
|
||||
};
|
||||
|
||||
@@ -31,7 +34,19 @@ const refreshViewport = () => {
|
||||
* @param {number} props.isOpen - isOpen
|
||||
* @returns component
|
||||
*/
|
||||
const RTPanel = ({ studies, viewports, activeIndex, isOpen, onContourItemClick }) => {
|
||||
const RTPanel = ({
|
||||
studies,
|
||||
viewports,
|
||||
activeIndex,
|
||||
isOpen,
|
||||
onContourItemClick,
|
||||
noContoursNotification,
|
||||
activeContexts = [],
|
||||
contexts = {},
|
||||
}) => {
|
||||
const isVTK = () => activeContexts.includes(contexts.VTK);
|
||||
const isCornerstone = () => activeContexts.includes(contexts.CORNERSTONE);
|
||||
|
||||
const [selectedContour, setSelectedContour] = useState();
|
||||
const DEFAULT_SET_INDEX = 0;
|
||||
const DEFAULT_STATE = {
|
||||
@@ -65,7 +80,10 @@ const RTPanel = ({ studies, viewports, activeIndex, isOpen, onContourItemClick }
|
||||
document.addEventListener('extensiondicomrtrtloaded', updateStructureSets);
|
||||
|
||||
return () => {
|
||||
document.removeEventListener('extensiondicomrtrtloaded', updateStructureSets);
|
||||
document.removeEventListener(
|
||||
'extensiondicomrtrtloaded',
|
||||
updateStructureSets
|
||||
);
|
||||
};
|
||||
}, []);
|
||||
|
||||
@@ -78,7 +96,9 @@ const RTPanel = ({ studies, viewports, activeIndex, isOpen, onContourItemClick }
|
||||
activeViewport.SeriesInstanceUID
|
||||
);
|
||||
|
||||
const studyMetadata = studyMetadataManager.get(activeViewport.StudyInstanceUID);
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
activeViewport.StudyInstanceUID
|
||||
);
|
||||
const referencedDisplaysets = studyMetadata.getDerivedDatasets({
|
||||
referencedSeriesInstanceUID: activeViewport.SeriesInstanceUID,
|
||||
Modality: 'RTSTRUCT',
|
||||
@@ -89,7 +109,7 @@ const RTPanel = ({ studies, viewports, activeIndex, isOpen, onContourItemClick }
|
||||
setState({
|
||||
referencedDisplaysets,
|
||||
selectedSet: defaultSet,
|
||||
sets: viewportSets
|
||||
sets: viewportSets,
|
||||
});
|
||||
} else {
|
||||
setState(DEFAULT_STATE);
|
||||
@@ -105,7 +125,10 @@ const RTPanel = ({ studies, viewports, activeIndex, isOpen, onContourItemClick }
|
||||
setShowSettings(showSettings && !isOpen);
|
||||
}, [isOpen]);
|
||||
|
||||
const toContourItem = ({ ROINumber, ROIName, RTROIObservations, colorArray, visible }, loadedSet) => {
|
||||
const toContourItem = (
|
||||
{ ROINumber, ROIName, RTROIObservations, colorArray, visible },
|
||||
loadedSet
|
||||
) => {
|
||||
let interpretedType = '';
|
||||
if (RTROIObservations && RTROIObservations.RTROIInterpretedType) {
|
||||
interpretedType = `(${RTROIObservations.RTROIInterpretedType})`;
|
||||
@@ -119,33 +142,47 @@ const RTPanel = ({ studies, viewports, activeIndex, isOpen, onContourItemClick }
|
||||
onClick={() => {
|
||||
setSelectedContour(isSameContour ? null : ROINumber);
|
||||
|
||||
const enabledElements = cornerstone.getEnabledElements();
|
||||
const element = enabledElements[activeIndex].element;
|
||||
const toolState = cornerstoneTools.getToolState(element, 'stack');
|
||||
if (isCornerstone()) {
|
||||
const enabledElements = cornerstone.getEnabledElements();
|
||||
const element = enabledElements[activeIndex].element;
|
||||
const toolState = cornerstoneTools.getToolState(element, 'stack');
|
||||
|
||||
if (!toolState) {
|
||||
return;
|
||||
if (!toolState) {
|
||||
return;
|
||||
}
|
||||
|
||||
const imageIds = toolState.data[0].imageIds;
|
||||
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
const imageId = module.getters.imageIdOfCenterFrameOfROIContour(
|
||||
state.selectedSet.SeriesInstanceUID,
|
||||
ROINumber,
|
||||
imageIds
|
||||
);
|
||||
|
||||
if (!imageId) {
|
||||
noContoursNotification();
|
||||
|
||||
return;
|
||||
}
|
||||
|
||||
const frameIndex = imageIds.indexOf(imageId);
|
||||
const SOPInstanceUID = cornerstone.metaData.get(
|
||||
'SOPInstanceUID',
|
||||
imageId
|
||||
);
|
||||
const StudyInstanceUID = cornerstone.metaData.get(
|
||||
'StudyInstanceUID',
|
||||
imageId
|
||||
);
|
||||
|
||||
onContourItemClick({
|
||||
StudyInstanceUID,
|
||||
SOPInstanceUID,
|
||||
frameIndex,
|
||||
activeViewportIndex: activeIndex,
|
||||
});
|
||||
}
|
||||
|
||||
const imageIds = toolState.data[0].imageIds;
|
||||
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
const imageId = module.getters.imageIdOfCenterFrameOfROIContour(
|
||||
state.selectedSet.SeriesInstanceUID,
|
||||
ROINumber,
|
||||
imageIds
|
||||
);
|
||||
|
||||
const frameIndex = imageIds.indexOf(imageId);
|
||||
const SOPInstanceUID = cornerstone.metaData.get('SOPInstanceUID', imageId);
|
||||
const StudyInstanceUID = cornerstone.metaData.get('StudyInstanceUID', imageId);
|
||||
|
||||
onContourItemClick({
|
||||
StudyInstanceUID,
|
||||
SOPInstanceUID,
|
||||
frameIndex,
|
||||
activeViewportIndex: activeIndex
|
||||
});
|
||||
}}
|
||||
label={`${ROIName} ${interpretedType}`}
|
||||
index={ROINumber}
|
||||
@@ -153,7 +190,10 @@ const RTPanel = ({ studies, viewports, activeIndex, isOpen, onContourItemClick }
|
||||
visible={visible}
|
||||
onVisibilityChange={() => {
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
module.setters.toggleROIContour(state.selectedSet.SeriesInstanceUID, ROINumber);
|
||||
module.setters.toggleROIContour(
|
||||
state.selectedSet.SeriesInstanceUID,
|
||||
ROINumber
|
||||
);
|
||||
}}
|
||||
/>
|
||||
);
|
||||
@@ -189,44 +229,70 @@ const RTPanel = ({ studies, viewports, activeIndex, isOpen, onContourItemClick }
|
||||
onClick={() => setShowSettings(true)}
|
||||
/>
|
||||
</div>
|
||||
{!state.referencedDisplaysets.length && <LoadingIndicator expand height="70px" width="70px" />}
|
||||
{state.referencedDisplaysets.map(displaySet => {
|
||||
const { SeriesInstanceUID, metadata, isLoaded } = displaySet;
|
||||
{!state.referencedDisplaysets.length && (
|
||||
<LoadingIndicator expand height="70px" width="70px" />
|
||||
)}
|
||||
{state.sets &&
|
||||
state.referencedDisplaysets.map(displaySet => {
|
||||
const { SeriesInstanceUID, metadata, isLoaded } = displaySet;
|
||||
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(viewports[activeIndex].SeriesInstanceUID);
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(
|
||||
viewports[activeIndex].SeriesInstanceUID
|
||||
);
|
||||
|
||||
const loadedSet = sets.find(set => set.SeriesInstanceUID === SeriesInstanceUID);
|
||||
return (
|
||||
<PanelSection
|
||||
key={SeriesInstanceUID}
|
||||
title={metadata.StructureSetLabel}
|
||||
loading={!isLoaded || !loadedSet}
|
||||
visible={isLoaded && loadedSet.visible}
|
||||
hideVisibleButton={!isLoaded}
|
||||
expanded={isLoaded && loadedSet.SeriesInstanceUID === state.selectedSet.SeriesInstanceUID}
|
||||
onVisibilityChange={() => {
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
module.setters.toggleStructureSet(SeriesInstanceUID);
|
||||
}}
|
||||
onExpandChange={async () => {
|
||||
if (!isLoaded) {
|
||||
await displaySet.load(viewports[activeIndex], studies);
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(viewports[activeIndex].SeriesInstanceUID);
|
||||
const selectedSet = sets.find(set => set.SeriesInstanceUID === SeriesInstanceUID);
|
||||
setState(state => ({ ...state, selectedSet, sets }));
|
||||
const loadedSet = sets.find(
|
||||
set => set.SeriesInstanceUID === SeriesInstanceUID
|
||||
);
|
||||
return (
|
||||
<PanelSection
|
||||
key={SeriesInstanceUID}
|
||||
title={metadata.StructureSetLabel}
|
||||
loading={!isLoaded || !loadedSet}
|
||||
visible={isLoaded && loadedSet.visible}
|
||||
hideVisibleButton={!isLoaded}
|
||||
expanded={
|
||||
isLoaded &&
|
||||
loadedSet.SeriesInstanceUID ===
|
||||
state.selectedSet.SeriesInstanceUID
|
||||
}
|
||||
}}
|
||||
>
|
||||
<ScrollableArea>
|
||||
<TableList headless>
|
||||
{isLoaded && loadedSet.ROIContours.map(c => toContourItem(c, loadedSet))}
|
||||
</TableList>
|
||||
</ScrollableArea>
|
||||
</PanelSection>
|
||||
);
|
||||
})}
|
||||
onVisibilityChange={newVisibility => {
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
|
||||
if (newVisibility) {
|
||||
module.setters.showStructureSet(loadedSet.SeriesInstanceUID);
|
||||
} else {
|
||||
module.setters.hideStructureSet(loadedSet.SeriesInstanceUID);
|
||||
}
|
||||
const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(
|
||||
viewports[activeIndex].SeriesInstanceUID
|
||||
);
|
||||
setState(state => ({ ...state, sets }));
|
||||
refreshViewport();
|
||||
}}
|
||||
onExpandChange={async () => {
|
||||
if (!isLoaded) {
|
||||
await displaySet.load(viewports[activeIndex], studies);
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(
|
||||
viewports[activeIndex].SeriesInstanceUID
|
||||
);
|
||||
const selectedSet = sets.find(
|
||||
set => set.SeriesInstanceUID === SeriesInstanceUID
|
||||
);
|
||||
setState(state => ({ ...state, selectedSet, sets }));
|
||||
}
|
||||
}}
|
||||
>
|
||||
<ScrollableArea>
|
||||
<TableList headless>
|
||||
{isLoaded &&
|
||||
loadedSet.ROIContours.map(c => toContourItem(c, loadedSet))}
|
||||
</TableList>
|
||||
</ScrollableArea>
|
||||
</PanelSection>
|
||||
);
|
||||
})}
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
@@ -61,14 +61,17 @@
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-label {
|
||||
overflow: hidden;
|
||||
max-width: calc(100% - 15px); /* calc(100% - 50px); 20px = eye icon */
|
||||
text-overflow: ellipsis;
|
||||
overflow-wrap: normal;
|
||||
white-space: nowrap;
|
||||
|
||||
display: flex;
|
||||
justify-content: space-between;
|
||||
padding-right: 10px;
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-label span {
|
||||
overflow-wrap: normal;
|
||||
white-space: nowrap;
|
||||
overflow: hidden;
|
||||
max-width: calc(100% - 40px); /* calc(100% - 50px); 20px = eye icon */
|
||||
text-overflow: ellipsis;
|
||||
}
|
||||
|
||||
.dcmrt-structure-set-item .item-label .eye-icon {
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
import React, { useState } from 'react';
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { TableListItem, Icon } from '@ohif/ui';
|
||||
|
||||
@@ -28,6 +28,11 @@ const StructureSetItem = ({
|
||||
selected = false,
|
||||
}) => {
|
||||
const [isVisible, setIsVisible] = useState(visible);
|
||||
|
||||
useEffect(() => {
|
||||
setIsVisible(visible);
|
||||
}, [visible])
|
||||
|
||||
return (
|
||||
<div className={`dcmrt-structure-set-item ${selected && 'selected'}`}>
|
||||
<TableListItem
|
||||
@@ -41,7 +46,7 @@ const StructureSetItem = ({
|
||||
>
|
||||
<div>
|
||||
<div className="item-label" style={{ marginBottom: 4 }}>
|
||||
{label}
|
||||
<span>{label}</span>
|
||||
<Icon
|
||||
className={`eye-icon ${isVisible && '--visible'}`}
|
||||
name={isVisible ? 'eye' : 'eye-closed'}
|
||||
|
||||
@@ -20,8 +20,21 @@ export default {
|
||||
preRegistration({ servicesManager, configuration = {} }) {
|
||||
init({ servicesManager, configuration });
|
||||
},
|
||||
getPanelModule({ commandsManager }) {
|
||||
getPanelModule({ commandsManager, servicesManager, api }) {
|
||||
const { UINotificationService } = servicesManager.services;
|
||||
|
||||
const ExtendedRTPanel = props => {
|
||||
const { activeContexts } = api.hooks.useAppContext();
|
||||
|
||||
const noContoursNotificationHandler = () => {
|
||||
UINotificationService.show({
|
||||
title: 'ROI Contour empty',
|
||||
message: 'The ROI contour has no structure set data.',
|
||||
type: 'error',
|
||||
autoClose: false,
|
||||
});
|
||||
};
|
||||
|
||||
const contourItemClickHandler = contourData => {
|
||||
commandsManager.runCommand('jumpToImage', contourData);
|
||||
};
|
||||
@@ -30,6 +43,9 @@ export default {
|
||||
<RTPanel
|
||||
{...props}
|
||||
onContourItemClick={contourItemClickHandler}
|
||||
activeContexts={activeContexts}
|
||||
contexts={api.contexts}
|
||||
noContoursNotification={noContoursNotificationHandler}
|
||||
/>
|
||||
);
|
||||
};
|
||||
@@ -51,8 +67,10 @@ export default {
|
||||
if (study && study.series) {
|
||||
for (let j = 0; j < study.series.length; j++) {
|
||||
const series = study.series[j];
|
||||
console.log(studies);
|
||||
if (['RTSTRUCT', 'RTPLAN', 'RTDOSE'].includes(series.Modality)) {
|
||||
if (
|
||||
/* Could be expanded to contain RTPLAN and RTDOSE information in the future */
|
||||
['RTSTRUCT'].includes(series.Modality)
|
||||
) {
|
||||
return false;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
import OHIF from '@ohif/core';
|
||||
import * as dcmjs from 'dcmjs';
|
||||
import dcmjs from 'dcmjs';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import cornerstoneTools from 'cornerstone-tools';
|
||||
import transformPointsToImagePlane from './utils/transformPointsToImagePlane';
|
||||
@@ -16,7 +16,6 @@ export default async function loadRTStruct(
|
||||
studies
|
||||
) {
|
||||
const rtStructModule = cornerstoneTools.getModule('rtstruct');
|
||||
|
||||
// Set here is loading is asynchronous.
|
||||
// If this function throws its set back to false.
|
||||
rtStructDisplaySet.isLoaded = true;
|
||||
@@ -68,7 +67,6 @@ export default async function loadRTStruct(
|
||||
const rtStructDisplayToolName = TOOL_NAMES.RTSTRUCT_DISPLAY_TOOL;
|
||||
|
||||
for (let i = 0; i < ROIContourSequence.length; i++) {
|
||||
|
||||
const ROIContour = ROIContourSequence[i];
|
||||
const { ReferencedROINumber, ContourSequence } = ROIContour;
|
||||
|
||||
@@ -238,7 +236,7 @@ function _setROIContourRTROIObservations(
|
||||
|
||||
function _setToolEnabledIfNotEnabled(toolName) {
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
const { element } = enabledElement;
|
||||
const { element, image } = enabledElement;
|
||||
const tool = cornerstoneTools.getToolForElement(element, toolName);
|
||||
|
||||
if (tool.mode !== 'enabled') {
|
||||
@@ -246,7 +244,9 @@ function _setToolEnabledIfNotEnabled(toolName) {
|
||||
cornerstoneTools.setToolEnabled(toolName);
|
||||
}
|
||||
|
||||
cornerstone.updateImage(element);
|
||||
if (image) {
|
||||
cornerstone.updateImage(element);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
@@ -5,7 +5,9 @@ import structureSetReferencesSeriesInstanceUid from './lib/structureSetReference
|
||||
// We should put this as a helper somewhere as we are using it in mutliple places.
|
||||
function refreshViewport() {
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
if (enabledElement.image) {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
@@ -81,7 +83,9 @@ function _setStructureSetVisible(SeriesInstanceUID, visible = true) {
|
||||
const StructureSet = getStructureSet(SeriesInstanceUID);
|
||||
|
||||
if (StructureSet) {
|
||||
StructureSet.visible = visible;
|
||||
StructureSet.ROIContours.forEach(ROIContour => {
|
||||
ROIContour.visible = visible;
|
||||
});
|
||||
|
||||
refreshViewport();
|
||||
}
|
||||
@@ -154,15 +158,10 @@ function setToggleROIContour(SeriesInstanceUID, ROINumber) {
|
||||
* Returns an array of StructureSets which reference the given SeriesInstanceUID.
|
||||
* @param {string} SeriesInstanceUID The SeriesInstanceUID to check.
|
||||
*/
|
||||
function getStructuresSetsWhichReferenceSeriesInstanceUid(
|
||||
SeriesInstanceUID
|
||||
) {
|
||||
function getStructuresSetsWhichReferenceSeriesInstanceUid(SeriesInstanceUID) {
|
||||
const { StructureSets } = state;
|
||||
return StructureSets.filter(StructureSet =>
|
||||
structureSetReferencesSeriesInstanceUid(
|
||||
StructureSet,
|
||||
SeriesInstanceUID
|
||||
)
|
||||
structureSetReferencesSeriesInstanceUid(StructureSet, SeriesInstanceUID)
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
@@ -3,6 +3,115 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.3.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.3.2...@ohif/extension-dicom-segmentation@0.3.3) (2020-07-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.3.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.3.1...@ohif/extension-dicom-segmentation@0.3.2) (2020-07-13)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Fix RT Panel hide/show and Fix looping load errors ([#1877](https://github.com/OHIF/Viewers/issues/1877)) ([e7cc735](https://github.com/OHIF/Viewers/commit/e7cc735c03d02eeb0d3af4ba02c15ed4f81bbec2))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.3.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.3.0...@ohif/extension-dicom-segmentation@0.3.1) (2020-06-15)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Disable seg panel when data for seg unavailable ([#1732](https://github.com/OHIF/Viewers/issues/1732)) ([698e900](https://github.com/OHIF/Viewers/commit/698e900b85121d3c2a46747c443ef69fb7a8c95b)), closes [#1728](https://github.com/OHIF/Viewers/issues/1728)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.3.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.6...@ohif/extension-dicom-segmentation@0.3.0) (2020-06-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 1729 - error boundary wrapper ([#1764](https://github.com/OHIF/Viewers/issues/1764)) ([c02b232](https://github.com/OHIF/Viewers/commit/c02b232b0cc24f38af5d5e3831d987d048e60ada))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.5...@ohif/extension-dicom-segmentation@0.2.6) (2020-05-12)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Fix seg color load ([#1724](https://github.com/OHIF/Viewers/issues/1724)) ([c4f84b1](https://github.com/OHIF/Viewers/commit/c4f84b1174d04ba84d37ed89b6d7ab541be28181))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.4...@ohif/extension-dicom-segmentation@0.2.5) (2020-05-06)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.3...@ohif/extension-dicom-segmentation@0.2.4) (2020-05-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.2...@ohif/extension-dicom-segmentation@0.2.3) (2020-05-04)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Proper error handling for derived display sets ([#1708](https://github.com/OHIF/Viewers/issues/1708)) ([5b20d8f](https://github.com/OHIF/Viewers/commit/5b20d8f323e4b3ef9988f2f2ab672d697b6da409))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.1...@ohif/extension-dicom-segmentation@0.2.2) (2020-04-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.0...@ohif/extension-dicom-segmentation@0.2.1) (2020-04-27)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Dropdown not updating when selecting segment ([#1675](https://github.com/OHIF/Viewers/issues/1675)) ([20e366f](https://github.com/OHIF/Viewers/commit/20e366ffbd76781f48dc99c9f59e24b255b5e5df)), closes [#1669](https://github.com/OHIF/Viewers/issues/1669)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.2.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.1.2...@ohif/extension-dicom-segmentation@0.2.0) (2020-04-24)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Seg jump to slice + show/hide ([835f64d](https://github.com/OHIF/Viewers/commit/835f64d47a9994f6a25aaf3941a4974e215e7e7f))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.1.1...@ohif/extension-dicom-segmentation@0.1.2) (2020-04-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-segmentation",
|
||||
"version": "0.1.2",
|
||||
"version": "0.3.3",
|
||||
"description": "OHIF extension for viewing segmentations in the 2D MPR view",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -30,14 +30,15 @@
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "4.12.5",
|
||||
"dcmjs": "^0.6.1",
|
||||
"cornerstone-tools": "4.15.1",
|
||||
"dcmjs": "0.16.0",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"gl-matrix": "^3.3.0",
|
||||
"react-select": "^3.0.8"
|
||||
}
|
||||
}
|
||||
@@ -1,71 +0,0 @@
|
||||
import { MODULE_TYPES, utils } from '@ohif/core';
|
||||
import loadSegmentation from './loadSegmentation';
|
||||
|
||||
// TODO: Should probably use dcmjs for this
|
||||
const SOP_CLASS_UIDS = {
|
||||
DICOM_SEG: '1.2.840.10008.5.1.4.1.1.66.4',
|
||||
};
|
||||
|
||||
const sopClassUIDs = Object.values(SOP_CLASS_UIDS);
|
||||
|
||||
// TODO: Handle the case where there is more than one SOP Class Handler for the
|
||||
// same SOP Class.
|
||||
const OHIFDicomSegSopClassHandler = {
|
||||
id: 'OHIFDicomSegSopClassHandler',
|
||||
type: MODULE_TYPES.SOP_CLASS_HANDLER,
|
||||
sopClassUIDs,
|
||||
getDisplaySetFromSeries: function (
|
||||
series,
|
||||
study,
|
||||
dicomWebClient,
|
||||
authorizationHeaders
|
||||
) {
|
||||
const instance = series.getFirstInstance();
|
||||
const metadata = instance.getData().metadata;
|
||||
|
||||
const {
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SeriesDescription,
|
||||
FrameOfReferenceUID,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
} = metadata;
|
||||
|
||||
const segDisplaySet = {
|
||||
Modality: 'SEG',
|
||||
displaySetInstanceUID: utils.guid(),
|
||||
wadoRoot: study.getData().wadoRoot,
|
||||
wadoUri: instance.getData().wadouri,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
FrameOfReferenceUID,
|
||||
authorizationHeaders,
|
||||
metadata,
|
||||
isDerived: true,
|
||||
referencedDisplaySetUID: null, // Assigned when loaded.
|
||||
labelmapIndex: null, // Assigned when loaded.
|
||||
isLoaded: false,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SeriesDescription,
|
||||
};
|
||||
|
||||
segDisplaySet.load = function (referencedDisplaySet, studies) {
|
||||
return loadSegmentation(
|
||||
segDisplaySet,
|
||||
referencedDisplaySet,
|
||||
studies
|
||||
).catch(error => {
|
||||
segDisplaySet.isLoaded = false;
|
||||
throw new Error(error);
|
||||
});
|
||||
};
|
||||
|
||||
return segDisplaySet;
|
||||
},
|
||||
};
|
||||
|
||||
export default OHIFDicomSegSopClassHandler;
|
||||
@@ -12,14 +12,6 @@
|
||||
height: 20px;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-label {
|
||||
overflow: hidden;
|
||||
max-width: calc(100% - 50px);
|
||||
text-overflow: ellipsis;
|
||||
overflow-wrap: normal;
|
||||
white-space: nowrap;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-info {
|
||||
display: inline-block;
|
||||
margin-top: 9px;
|
||||
@@ -62,3 +54,30 @@
|
||||
.dcmseg-segment-item .segment-actions .btnAction i {
|
||||
margin-right: 4px;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-label {
|
||||
display: flex;
|
||||
justify-content: space-between;
|
||||
padding-right: 20px;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-label span {
|
||||
overflow-wrap: normal;
|
||||
white-space: nowrap;
|
||||
overflow: hidden;
|
||||
max-width: calc(100% - 40px); /* calc(100% - 50px); 20px = eye icon */
|
||||
text-overflow: ellipsis;
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-label .eye-icon {
|
||||
cursor: pointer;
|
||||
color: var(--active-color);
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-label .eye-icon:hover {
|
||||
color: var(--hover-color);
|
||||
}
|
||||
|
||||
.dcmseg-segment-item .segment-label .eye-icon.--visible {
|
||||
color: var(--default-color);
|
||||
}
|
||||
@@ -1,4 +1,4 @@
|
||||
import React from 'react';
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { TableListItem, Icon } from '@ohif/ui';
|
||||
|
||||
@@ -17,48 +17,68 @@ ColoredCircle.propTypes = {
|
||||
color: PropTypes.array.isRequired,
|
||||
};
|
||||
|
||||
const SegmentItem = ({ index, label, onClick, itemClass, color }) => (
|
||||
<div className="dcmseg-segment-item">
|
||||
<TableListItem
|
||||
key={index}
|
||||
itemKey={index}
|
||||
itemIndex={index}
|
||||
itemClass={itemClass}
|
||||
itemMeta={<ColoredCircle color={color} />}
|
||||
itemMetaClass="segment-color-section"
|
||||
onItemClick={onClick}
|
||||
>
|
||||
<div>
|
||||
<div className="segment-label" style={{ marginBottom: 4 }}>
|
||||
{label}
|
||||
</div>
|
||||
{false && <div className="segment-info">{'...'}</div>}
|
||||
{false && (
|
||||
<div className="segment-actions">
|
||||
<button
|
||||
className="btnAction"
|
||||
onClick={() => console.log('Relabelling...')}
|
||||
>
|
||||
<span style={{ marginRight: '4px' }}>
|
||||
<Icon name="edit" width="14px" height="14px" />
|
||||
</span>
|
||||
const SegmentItem = ({ index, label, onClick, itemClass, color, visible = true, onVisibilityChange }) => {
|
||||
const [isVisible, setIsVisible] = useState(visible);
|
||||
|
||||
useEffect(() => {
|
||||
setIsVisible(visible);
|
||||
}, [visible]);
|
||||
|
||||
return (
|
||||
<div className="dcmseg-segment-item">
|
||||
<TableListItem
|
||||
key={index}
|
||||
itemKey={index}
|
||||
itemIndex={index}
|
||||
itemClass={itemClass}
|
||||
itemMeta={<ColoredCircle color={color} />}
|
||||
itemMetaClass="segment-color-section"
|
||||
onItemClick={onClick}
|
||||
>
|
||||
<div>
|
||||
<div className="segment-label" style={{ marginBottom: 4 }}>
|
||||
<span>{label}</span>
|
||||
<Icon
|
||||
className={`eye-icon ${isVisible && '--visible'}`}
|
||||
name={isVisible ? 'eye' : 'eye-closed'}
|
||||
width="20px"
|
||||
height="20px"
|
||||
onClick={event => {
|
||||
event.stopPropagation();
|
||||
const newVisibility = !isVisible;
|
||||
setIsVisible(newVisibility);
|
||||
onVisibilityChange(newVisibility);
|
||||
}}
|
||||
/>
|
||||
</div>
|
||||
{false && <div className="segment-info">{'...'}</div>}
|
||||
{false && (
|
||||
<div className="segment-actions">
|
||||
<button
|
||||
className="btnAction"
|
||||
onClick={() => console.log('Relabelling...')}
|
||||
>
|
||||
<span style={{ marginRight: '4px' }}>
|
||||
<Icon name="edit" width="14px" height="14px" />
|
||||
</span>
|
||||
Relabel
|
||||
</button>
|
||||
<button
|
||||
className="btnAction"
|
||||
onClick={() => console.log('Editing description...')}
|
||||
>
|
||||
<span style={{ marginRight: '4px' }}>
|
||||
<Icon name="edit" width="14px" height="14px" />
|
||||
</span>
|
||||
<button
|
||||
className="btnAction"
|
||||
onClick={() => console.log('Editing description...')}
|
||||
>
|
||||
<span style={{ marginRight: '4px' }}>
|
||||
<Icon name="edit" width="14px" height="14px" />
|
||||
</span>
|
||||
Description
|
||||
</button>
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
</TableListItem>
|
||||
</div>
|
||||
);
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
</TableListItem>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
SegmentItem.propTypes = {
|
||||
index: PropTypes.oneOfType([PropTypes.string, PropTypes.number]).isRequired,
|
||||
|
||||
@@ -8,6 +8,11 @@
|
||||
flex-direction: column;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-panel.disabled {
|
||||
opacity: 0.6;
|
||||
pointer-events: none;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-panel h3 {
|
||||
padding-left: 20px;
|
||||
margin-top: 0;
|
||||
|
||||
+365
-138
@@ -1,4 +1,4 @@
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import React, { useState, useEffect, useCallback } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import cornerstoneTools from 'cornerstone-tools';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
@@ -28,28 +28,57 @@ const refreshViewport = () => {
|
||||
/**
|
||||
* SegmentationPanel component
|
||||
*
|
||||
* @param {Object} props
|
||||
* @param {Array} props.studies
|
||||
* @param {Array} props.viewports - viewportSpecificData
|
||||
* @param {number} props.activeIndex - activeViewportIndex
|
||||
* @param {Array} props.studies - Studies data
|
||||
* @param {Array} props.viewports - Viewports data (viewportSpecificData)
|
||||
* @param {number} props.activeIndex - Active viewport index
|
||||
* @param {boolean} props.isOpen - Boolean that indicates if the panel is expanded
|
||||
* @param {Function} props.onSegmentItemClick - Segment click handler
|
||||
* @param {Function} props.onSegmentVisibilityChange - Segment visibiliy change handler
|
||||
* @param {Function} props.onConfigurationChange - Configuration change handler
|
||||
* @param {Function} props.activeContexts - List of active application contexts
|
||||
* @param {Function} props.contexts - List of available application contexts
|
||||
* @returns component
|
||||
*/
|
||||
const SegmentationPanel = ({ studies, viewports, activeIndex, isOpen }) => {
|
||||
const SegmentationPanel = ({
|
||||
studies,
|
||||
viewports,
|
||||
activeIndex,
|
||||
isOpen,
|
||||
onSegmentItemClick,
|
||||
onSegmentVisibilityChange,
|
||||
onConfigurationChange,
|
||||
onDisplaySetLoadFailure,
|
||||
onSelectedSegmentationChange,
|
||||
activeContexts = [],
|
||||
contexts = {},
|
||||
}) => {
|
||||
const isVTK = () => activeContexts.includes(contexts.VTK);
|
||||
const isCornerstone = () => activeContexts.includes(contexts.CORNERSTONE);
|
||||
|
||||
/*
|
||||
* TODO: wrap get/set interactions with the cornerstoneTools
|
||||
* store with context to make these kind of things less blurry.
|
||||
*/
|
||||
const { configuration } = cornerstoneTools.getModule('segmentation');
|
||||
const DEFAULT_BRUSH_RADIUS = configuration.radius || 10;
|
||||
|
||||
/*
|
||||
* TODO: We shouldn't hardcode brushColor color, in the future
|
||||
* the SEG may set the colorLUT to whatever it wants.
|
||||
*/
|
||||
const [state, setState] = useState({
|
||||
brushRadius: DEFAULT_BRUSH_RADIUS,
|
||||
brushColor: 'rgba(221, 85, 85, 1)', /* TODO: We shouldn't hardcode this color, in the future the SEG may set the colorLUT to whatever it wants. */
|
||||
brushColor:
|
||||
'rgba(221, 85, 85, 1)',
|
||||
selectedSegment: null,
|
||||
selectedSegmentation: null,
|
||||
showSegSettings: false,
|
||||
showSegmentationSettings: false,
|
||||
brushStackState: null,
|
||||
labelmapList: [],
|
||||
segmentList: []
|
||||
segmentList: [],
|
||||
cachedSegmentsProperties: [],
|
||||
isLoading: false,
|
||||
isDisabled: true
|
||||
});
|
||||
|
||||
useEffect(() => {
|
||||
@@ -57,10 +86,34 @@ const SegmentationPanel = ({ studies, viewports, activeIndex, isOpen }) => {
|
||||
log.warn('Segmentation Panel: labelmap modified', event);
|
||||
const module = cornerstoneTools.getModule('segmentation');
|
||||
const activeViewport = viewports[activeIndex];
|
||||
const firstImageId = studyMetadata.getFirstImageId(activeViewport.displaySetInstanceUID);
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
activeViewport.StudyInstanceUID
|
||||
);
|
||||
const firstImageId = studyMetadata.getFirstImageId(
|
||||
activeViewport.displaySetInstanceUID
|
||||
);
|
||||
updateState('brushStackState', module.state.series[firstImageId]);
|
||||
};
|
||||
|
||||
/*
|
||||
* TODO: Improve the way we notify parts of the app that depends on segs to be loaded.
|
||||
*
|
||||
* Currently we are using a non-ideal implementation through a custom event to notify the segmentation panel
|
||||
* or other components that could rely on loaded segmentations that
|
||||
* the segments were loaded so that e.g. when the user opens the panel
|
||||
* before the segments are fully loaded, the panel can subscribe to this custom event
|
||||
* and update itself with the new segments.
|
||||
*
|
||||
* This limitation is due to the fact that the cs segmentation module is an object (which will be
|
||||
* updated after the segments are loaded) that React its not aware of its changes
|
||||
* because the module object its not passed in to the panel component as prop but accessed externally.
|
||||
*
|
||||
* Improving this event approach to something reactive that can be tracked inside the react lifecycle,
|
||||
* allows us to easily watch the module or the segmentations loading process in any other component
|
||||
* without subscribing to external events.
|
||||
*/
|
||||
document.addEventListener('extensiondicomsegmentationsegloaded', refreshSegmentations);
|
||||
|
||||
/*
|
||||
* These are specific to each element;
|
||||
* Need to iterate cornerstone-tools tracked enabled elements?
|
||||
@@ -74,6 +127,7 @@ const SegmentationPanel = ({ studies, viewports, activeIndex, isOpen }) => {
|
||||
);
|
||||
|
||||
return () => {
|
||||
document.removeEventListener('extensiondicomsegmentationsegloaded', refreshSegmentations);
|
||||
cornerstoneTools.store.state.enabledElements.forEach(enabledElement =>
|
||||
enabledElement.removeEventListener(
|
||||
'cornerstonetoolslabelmapmodified',
|
||||
@@ -81,154 +135,312 @@ const SegmentationPanel = ({ studies, viewports, activeIndex, isOpen }) => {
|
||||
)
|
||||
);
|
||||
};
|
||||
});
|
||||
}, [activeIndex, viewports]);
|
||||
|
||||
useEffect(() => {
|
||||
const refreshSegmentations = useCallback(() => {
|
||||
const module = cornerstoneTools.getModule('segmentation');
|
||||
const activeViewport = viewports[activeIndex];
|
||||
const studyMetadata = studyMetadataManager.get(activeViewport.StudyInstanceUID);
|
||||
const firstImageId = studyMetadata.getFirstImageId(activeViewport.displaySetInstanceUID);
|
||||
const brushStackState = module.state.series[firstImageId];
|
||||
|
||||
if (brushStackState) {
|
||||
const labelmap3D = brushStackState.labelmaps3D[brushStackState.activeLabelmapIndex];
|
||||
const labelmapList = getLabelmapList(brushStackState, firstImageId, activeViewport);
|
||||
const segmentList = getSegmentList(labelmap3D, firstImageId);
|
||||
setState(state => ({
|
||||
...state,
|
||||
brushStackState,
|
||||
selectedSegmentation: brushStackState.activeLabelmapIndex,
|
||||
labelmapList,
|
||||
segmentList
|
||||
}));
|
||||
} else {
|
||||
setState(state => ({
|
||||
...state,
|
||||
labelmapList: [],
|
||||
segmentList: [],
|
||||
}));
|
||||
const isDisabled = !activeViewport || !activeViewport.StudyInstanceUID;
|
||||
if (!isDisabled) {
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
activeViewport.StudyInstanceUID
|
||||
);
|
||||
const firstImageId = studyMetadata.getFirstImageId(
|
||||
activeViewport.displaySetInstanceUID
|
||||
);
|
||||
const brushStackState = module.state.series[firstImageId];
|
||||
if (brushStackState) {
|
||||
const labelmap3D =
|
||||
brushStackState.labelmaps3D[brushStackState.activeLabelmapIndex];
|
||||
const labelmapList = getLabelmapList(
|
||||
brushStackState,
|
||||
firstImageId,
|
||||
activeViewport
|
||||
);
|
||||
const segmentList = getSegmentList(
|
||||
labelmap3D,
|
||||
firstImageId,
|
||||
brushStackState
|
||||
);
|
||||
setState(state => ({
|
||||
...state,
|
||||
brushStackState,
|
||||
selectedSegmentation: brushStackState.activeLabelmapIndex,
|
||||
labelmapList,
|
||||
segmentList,
|
||||
isDisabled
|
||||
}));
|
||||
} else {
|
||||
setState(state => ({
|
||||
...state,
|
||||
labelmapList: [],
|
||||
segmentList: [],
|
||||
isDisabled
|
||||
}));
|
||||
}
|
||||
}
|
||||
}, [studies, viewports, activeIndex]);
|
||||
}, [
|
||||
viewports,
|
||||
activeIndex,
|
||||
state.isLoading
|
||||
]);
|
||||
|
||||
useEffect(() => {
|
||||
refreshSegmentations();
|
||||
}, [viewports, activeIndex, isOpen, state.selectedSegmentation, activeContexts, state.isLoading]);
|
||||
|
||||
/* Handle open/closed panel behaviour */
|
||||
useEffect(() => {
|
||||
updateState('showSegSettings', state.showSegSettings && !isOpen);
|
||||
setState(state => ({
|
||||
...state,
|
||||
showSegmentationSettings: state.showSegmentationSettings && !isOpen,
|
||||
}));
|
||||
}, [isOpen]);
|
||||
|
||||
const getLabelmapList = (brushStackState, firstImageId, activeViewport) => {
|
||||
/* Get list of SEG labelmaps specific to active viewport (reference series) */
|
||||
const referencedSegDisplaysets = _getReferencedSegDisplaysets(
|
||||
activeViewport.StudyInstanceUID,
|
||||
activeViewport.SeriesInstanceUID
|
||||
);
|
||||
const getLabelmapList = useCallback(
|
||||
(brushStackState, firstImageId, activeViewport) => {
|
||||
/* Get list of SEG labelmaps specific to active viewport (reference series) */
|
||||
const referencedSegDisplaysets = _getReferencedSegDisplaysets(
|
||||
activeViewport.StudyInstanceUID,
|
||||
activeViewport.SeriesInstanceUID
|
||||
);
|
||||
|
||||
return referencedSegDisplaysets.map((displaySet, index) => {
|
||||
const { labelmapIndex, SeriesDate, SeriesTime } = displaySet;
|
||||
return referencedSegDisplaysets.map((displaySet, index) => {
|
||||
const { labelmapIndex, SeriesDate, SeriesTime } = displaySet;
|
||||
|
||||
/* Map to display representation */
|
||||
const dateStr = `${SeriesDate}:${SeriesTime}`.split('.')[0];
|
||||
const date = moment(dateStr, 'YYYYMMDD:HHmmss');
|
||||
const isActiveLabelmap =
|
||||
labelmapIndex === brushStackState.activeLabelmapIndex;
|
||||
const displayDate = date.format('ddd, MMM Do YYYY');
|
||||
const displayTime = date.format('h:mm:ss a');
|
||||
const displayDescription = displaySet.SeriesDescription;
|
||||
/* Map to display representation */
|
||||
const dateStr = `${SeriesDate}:${SeriesTime}`.split('.')[0];
|
||||
const date = moment(dateStr, 'YYYYMMDD:HHmmss');
|
||||
const isActiveLabelmap =
|
||||
labelmapIndex === brushStackState.activeLabelmapIndex;
|
||||
const displayDate = date.format('ddd, MMM Do YYYY');
|
||||
const displayTime = date.format('h:mm:ss a');
|
||||
const displayDescription = displaySet.SeriesDescription;
|
||||
|
||||
return {
|
||||
value: labelmapIndex,
|
||||
title: displayDescription,
|
||||
description: displayDate,
|
||||
onClick: async () => {
|
||||
const activatedLabelmapIndex = await _setActiveLabelmap(
|
||||
activeViewport,
|
||||
studies,
|
||||
displaySet,
|
||||
firstImageId,
|
||||
brushStackState.activeLabelmapIndex
|
||||
);
|
||||
updateState('selectedSegmentation', activatedLabelmapIndex);
|
||||
},
|
||||
};
|
||||
});
|
||||
};
|
||||
return {
|
||||
value: labelmapIndex,
|
||||
title: displayDescription,
|
||||
description: displayDate,
|
||||
onClick: async () => {
|
||||
const activatedLabelmapIndex = await _setActiveLabelmap(
|
||||
activeViewport,
|
||||
studies,
|
||||
displaySet,
|
||||
firstImageId,
|
||||
brushStackState.activeLabelmapIndex,
|
||||
() => onSelectedSegmentationChange(),
|
||||
onDisplaySetLoadFailure
|
||||
);
|
||||
updateState('selectedSegmentation', activatedLabelmapIndex);
|
||||
},
|
||||
};
|
||||
});
|
||||
},
|
||||
[studies]
|
||||
);
|
||||
|
||||
const getSegmentList = (labelmap3D, firstImageId) => {
|
||||
/*
|
||||
* Newly created segments have no `meta`
|
||||
* So we instead build a list of all segment indexes in use
|
||||
* Then find any associated metadata
|
||||
*/
|
||||
const uniqueSegmentIndexes = labelmap3D.labelmaps2D
|
||||
.reduce((acc, labelmap2D) => {
|
||||
if (labelmap2D) {
|
||||
const segmentIndexes = labelmap2D.segmentsOnLabelmap;
|
||||
const getSegmentList = useCallback(
|
||||
(labelmap3D, firstImageId, brushStackState) => {
|
||||
/*
|
||||
* Newly created segments have no `meta`
|
||||
* So we instead build a list of all segment indexes in use
|
||||
* Then find any associated metadata
|
||||
*/
|
||||
const uniqueSegmentIndexes = labelmap3D.labelmaps2D
|
||||
.reduce((acc, labelmap2D) => {
|
||||
if (labelmap2D) {
|
||||
const segmentIndexes = labelmap2D.segmentsOnLabelmap;
|
||||
|
||||
for (let i = 0; i < segmentIndexes.length; i++) {
|
||||
if (!acc.includes(segmentIndexes[i]) && segmentIndexes[i] !== 0) {
|
||||
acc.push(segmentIndexes[i]);
|
||||
for (let i = 0; i < segmentIndexes.length; i++) {
|
||||
if (!acc.includes(segmentIndexes[i]) && segmentIndexes[i] !== 0) {
|
||||
acc.push(segmentIndexes[i]);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return acc;
|
||||
}, [])
|
||||
.sort((a, b) => a - b);
|
||||
|
||||
const module = cornerstoneTools.getModule('segmentation');
|
||||
const colorLutTable =
|
||||
module.state.colorLutTables[labelmap3D.colorLUTIndex];
|
||||
const hasLabelmapMeta = labelmap3D.metadata && labelmap3D.metadata.data;
|
||||
|
||||
const segmentList = [];
|
||||
for (let i = 0; i < uniqueSegmentIndexes.length; i++) {
|
||||
const segmentIndex = uniqueSegmentIndexes[i];
|
||||
|
||||
const color = colorLutTable[segmentIndex];
|
||||
let segmentLabel = '(unlabeled)';
|
||||
let segmentNumber = segmentIndex;
|
||||
|
||||
/* Meta */
|
||||
if (hasLabelmapMeta) {
|
||||
const segmentMeta = labelmap3D.metadata.data[segmentIndex];
|
||||
|
||||
if (segmentMeta) {
|
||||
segmentNumber = segmentMeta.SegmentNumber;
|
||||
segmentLabel = segmentMeta.SegmentLabel;
|
||||
}
|
||||
}
|
||||
|
||||
return acc;
|
||||
}, [])
|
||||
.sort((a, b) => a - b);
|
||||
const sameSegment = state.selectedSegment === segmentNumber;
|
||||
const setCurrentSelectedSegment = () => {
|
||||
_setActiveSegment(
|
||||
firstImageId,
|
||||
segmentNumber,
|
||||
labelmap3D.activeSegmentIndex
|
||||
);
|
||||
updateState('selectedSegment', sameSegment ? null : segmentNumber);
|
||||
|
||||
const module = cornerstoneTools.getModule('segmentation');
|
||||
const colorLutTable =
|
||||
module.state.colorLutTables[labelmap3D.colorLUTIndex];
|
||||
const hasLabelmapMeta = labelmap3D.metadata && labelmap3D.metadata.data;
|
||||
const validIndexList = [];
|
||||
labelmap3D.labelmaps2D.forEach((labelMap2D, index) => {
|
||||
if (labelMap2D.segmentsOnLabelmap.includes(segmentNumber)) {
|
||||
validIndexList.push(index);
|
||||
}
|
||||
});
|
||||
const avg = array => array.reduce((a, b) => a + b) / array.length;
|
||||
const average = avg(validIndexList);
|
||||
const closest = validIndexList.reduce((prev, curr) => {
|
||||
return Math.abs(curr - average) < Math.abs(prev - average)
|
||||
? curr
|
||||
: prev;
|
||||
});
|
||||
|
||||
const segmentList = [];
|
||||
for (let i = 0; i < uniqueSegmentIndexes.length; i++) {
|
||||
const segmentIndex = uniqueSegmentIndexes[i];
|
||||
if (isCornerstone()) {
|
||||
const enabledElements = cornerstone.getEnabledElements();
|
||||
const element = enabledElements[activeIndex].element;
|
||||
const toolState = cornerstoneTools.getToolState(element, 'stack');
|
||||
|
||||
const color = colorLutTable[segmentIndex];
|
||||
let segmentLabel = '(unlabeled)';
|
||||
let segmentNumber = segmentIndex;
|
||||
if (!toolState) {
|
||||
return;
|
||||
}
|
||||
|
||||
/* Meta */
|
||||
if (hasLabelmapMeta) {
|
||||
const segmentMeta = labelmap3D.metadata.data[segmentIndex];
|
||||
const imageIds = toolState.data[0].imageIds;
|
||||
const imageId = imageIds[closest];
|
||||
const frameIndex = imageIds.indexOf(imageId);
|
||||
|
||||
if (segmentMeta) {
|
||||
segmentNumber = segmentMeta.SegmentNumber;
|
||||
segmentLabel = segmentMeta.SegmentLabel;
|
||||
const SOPInstanceUID = cornerstone.metaData.get(
|
||||
'SOPInstanceUID',
|
||||
imageId
|
||||
);
|
||||
const StudyInstanceUID = cornerstone.metaData.get(
|
||||
'StudyInstanceUID',
|
||||
imageId
|
||||
);
|
||||
|
||||
onSegmentItemClick({
|
||||
StudyInstanceUID,
|
||||
SOPInstanceUID,
|
||||
frameIndex,
|
||||
activeViewportIndex: activeIndex,
|
||||
});
|
||||
}
|
||||
|
||||
if (isVTK()) {
|
||||
const activeViewport = viewports[activeIndex];
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
activeViewport.StudyInstanceUID
|
||||
);
|
||||
const allDisplaySets = studyMetadata.getDisplaySets();
|
||||
const currentDisplaySet = allDisplaySets.find(
|
||||
displaySet =>
|
||||
displaySet.displaySetInstanceUID ===
|
||||
activeViewport.displaySetInstanceUID
|
||||
);
|
||||
|
||||
const frame = labelmap3D.labelmaps2D[closest];
|
||||
|
||||
onSegmentItemClick({
|
||||
studies,
|
||||
StudyInstanceUID: currentDisplaySet.StudyInstanceUID,
|
||||
displaySetInstanceUID: currentDisplaySet.displaySetInstanceUID,
|
||||
SOPClassUID: viewports[activeIndex].sopClassUIDs[0],
|
||||
SOPInstanceUID: currentDisplaySet.SOPInstanceUID,
|
||||
segmentNumber,
|
||||
frameIndex: closest,
|
||||
frame,
|
||||
});
|
||||
}
|
||||
};
|
||||
|
||||
const isSegmentVisible = () => {
|
||||
return !labelmap3D.segmentsHidden[segmentIndex];
|
||||
};
|
||||
|
||||
const toggleSegmentVisibility = () => {
|
||||
const segmentsHidden = labelmap3D.segmentsHidden;
|
||||
segmentsHidden[segmentIndex] = !segmentsHidden[segmentIndex];
|
||||
return !segmentsHidden[segmentIndex];
|
||||
};
|
||||
|
||||
const cachedSegmentProperties = state.cachedSegmentsProperties[segmentNumber];
|
||||
let visible = isSegmentVisible();
|
||||
if (cachedSegmentProperties && cachedSegmentProperties.visible !== visible) {
|
||||
toggleSegmentVisibility();
|
||||
}
|
||||
|
||||
segmentList.push(
|
||||
<SegmentItem
|
||||
key={segmentNumber}
|
||||
itemClass={`segment-item ${sameSegment && 'selected'}`}
|
||||
onClick={() => setCurrentSelectedSegment()}
|
||||
label={segmentLabel}
|
||||
index={segmentNumber}
|
||||
color={color}
|
||||
visible={visible}
|
||||
onVisibilityChange={newVisibility => {
|
||||
if (isCornerstone()) {
|
||||
const enabledElements = cornerstone.getEnabledElements();
|
||||
const element = enabledElements[activeIndex].element;
|
||||
module.setters.toggleSegmentVisibility(
|
||||
element,
|
||||
segmentNumber,
|
||||
brushStackState.activeLabelmapIndex
|
||||
);
|
||||
}
|
||||
|
||||
if (isVTK()) {
|
||||
onSegmentVisibilityChange(segmentNumber, newVisibility);
|
||||
}
|
||||
|
||||
updateCachedSegmentsProperties(segmentNumber, { visible: newVisibility });
|
||||
refreshViewport();
|
||||
}}
|
||||
/>
|
||||
);
|
||||
}
|
||||
|
||||
const sameSegment = state.selectedSegment === segmentNumber;
|
||||
const setCurrentSelectedSegment = () => {
|
||||
_setActiveSegment(
|
||||
firstImageId,
|
||||
segmentNumber,
|
||||
labelmap3D.activeSegmentIndex
|
||||
);
|
||||
updateState('selectedSegment', sameSegment ? null : segmentNumber);
|
||||
};
|
||||
return segmentList;
|
||||
|
||||
segmentList.push(
|
||||
<SegmentItem
|
||||
key={segmentNumber}
|
||||
itemClass={`segment-item ${sameSegment && 'selected'}`}
|
||||
onClick={setCurrentSelectedSegment}
|
||||
label={segmentLabel}
|
||||
index={segmentNumber}
|
||||
color={color}
|
||||
/>
|
||||
);
|
||||
}
|
||||
/*
|
||||
* Let's iterate over segmentIndexes ^ above
|
||||
* If meta has a match, use it to show info
|
||||
* If now, add "no-meta" class
|
||||
* Show default name
|
||||
*/
|
||||
},
|
||||
[activeIndex, onSegmentItemClick, state.selectedSegment, state.isLoading]
|
||||
);
|
||||
|
||||
return segmentList;
|
||||
const updateCachedSegmentsProperties = (segmentNumber, properties) => {
|
||||
const segmentsProperties = state.cachedSegmentsProperties;
|
||||
const segmentProperties = state.cachedSegmentsProperties[segmentNumber];
|
||||
|
||||
/*
|
||||
* Let's iterate over segmentIndexes ^ above
|
||||
* If meta has a match, use it to show info
|
||||
* If now, add "no-meta" class
|
||||
* Show default name
|
||||
*/
|
||||
segmentsProperties[segmentNumber] =
|
||||
segmentProperties ?
|
||||
{ ...segmentProperties, ...properties } :
|
||||
properties;
|
||||
|
||||
updateState('cachedSegmentsProperties', segmentsProperties);
|
||||
};
|
||||
|
||||
useEffect(() => {
|
||||
updateState('cachedSegmentsProperties', []);
|
||||
}, [activeContexts]);
|
||||
|
||||
const updateState = (field, value) => {
|
||||
setState(state => ({ ...state, [field]: value }));
|
||||
};
|
||||
@@ -270,15 +482,13 @@ const SegmentationPanel = ({ studies, viewports, activeIndex, isOpen }) => {
|
||||
}
|
||||
|
||||
const module = cornerstoneTools.getModule('segmentation');
|
||||
const colorLutTable =
|
||||
module.state.colorLutTables[labelmap3D.colorLUTIndex];
|
||||
const colorLutTable = module.state.colorLutTables[labelmap3D.colorLUTIndex];
|
||||
const color = colorLutTable[labelmap3D.activeSegmentIndex];
|
||||
|
||||
return `rgba(${color.join(',')})`;
|
||||
};
|
||||
|
||||
const updateConfiguration = newConfiguration => {
|
||||
/* Supported configuration */
|
||||
configuration.renderFill = newConfiguration.renderFill;
|
||||
configuration.renderOutline = newConfiguration.renderOutline;
|
||||
configuration.shouldRenderInactiveLabelmaps =
|
||||
@@ -288,26 +498,29 @@ const SegmentationPanel = ({ studies, viewports, activeIndex, isOpen }) => {
|
||||
configuration.outlineWidth = newConfiguration.outlineWidth;
|
||||
configuration.fillAlphaInactive = newConfiguration.fillAlphaInactive;
|
||||
configuration.outlineAlphaInactive = newConfiguration.outlineAlphaInactive;
|
||||
onConfigurationChange(newConfiguration);
|
||||
refreshViewport();
|
||||
};
|
||||
|
||||
if (state.showSegSettings) {
|
||||
const disabledConfigurationFields = ['outlineAlpha', 'shouldRenderInactiveLabelmaps'];
|
||||
if (state.showSegmentationSettings) {
|
||||
return (
|
||||
<SegmentationSettings
|
||||
disabledFields={isVTK() ? disabledConfigurationFields : []}
|
||||
configuration={configuration}
|
||||
onBack={() => updateState('showSegSettings', false)}
|
||||
onBack={() => updateState('showSegmentationSettings', false)}
|
||||
onChange={updateConfiguration}
|
||||
/>
|
||||
);
|
||||
} else {
|
||||
return (
|
||||
<div className="dcmseg-segmentation-panel">
|
||||
<div className={`dcmseg-segmentation-panel ${state.isDisabled && 'disabled'}`}>
|
||||
<Icon
|
||||
className="cog-icon"
|
||||
name="cog"
|
||||
width="25px"
|
||||
height="25px"
|
||||
onClick={() => updateState('showSegSettings', true)}
|
||||
onClick={() => updateState('showSegmentationSettings', true)}
|
||||
/>
|
||||
{false && (
|
||||
<form className="selector-form">
|
||||
@@ -328,9 +541,9 @@ const SegmentationPanel = ({ studies, viewports, activeIndex, isOpen }) => {
|
||||
<h3>Segmentations</h3>
|
||||
<div className="segmentations">
|
||||
<SegmentationSelect
|
||||
value={
|
||||
state.labelmapList.find(i => i.value === state.selectedSegmentation) || null
|
||||
}
|
||||
value={state.labelmapList.find(
|
||||
i => i.value === state.selectedSegmentation
|
||||
)}
|
||||
formatOptionLabel={SegmentationItem}
|
||||
options={state.labelmapList}
|
||||
/>
|
||||
@@ -415,7 +628,9 @@ const _setActiveLabelmap = async (
|
||||
studies,
|
||||
displaySet,
|
||||
firstImageId,
|
||||
activeLabelmapIndex
|
||||
activeLabelmapIndex,
|
||||
callback = () => { },
|
||||
onDisplaySetLoadFailure
|
||||
) => {
|
||||
if (displaySet.labelmapIndex === activeLabelmapIndex) {
|
||||
log.warn(`${activeLabelmapIndex} is already the active labelmap`);
|
||||
@@ -425,7 +640,17 @@ const _setActiveLabelmap = async (
|
||||
if (!displaySet.isLoaded) {
|
||||
// What props does this expect `viewportSpecificData` to have?
|
||||
// TODO: Should this return the `labelmapIndex`?
|
||||
await displaySet.load(viewportSpecificData, studies);
|
||||
|
||||
const loadPromise = displaySet.load(viewportSpecificData, studies);
|
||||
|
||||
loadPromise.catch(error => {
|
||||
onDisplaySetLoadFailure(error);
|
||||
|
||||
// Return old index.
|
||||
return activeLabelmapIndex;
|
||||
});
|
||||
|
||||
await loadPromise;
|
||||
}
|
||||
|
||||
const { state } = cornerstoneTools.getModule('segmentation');
|
||||
@@ -434,6 +659,8 @@ const _setActiveLabelmap = async (
|
||||
|
||||
refreshViewport();
|
||||
|
||||
callback();
|
||||
|
||||
return displaySet.labelmapIndex;
|
||||
};
|
||||
|
||||
|
||||
@@ -17,6 +17,10 @@ const defaultColor = computedstyle.getPropertyValue('--default-color');
|
||||
const uiGrayDark = computedstyle.getPropertyValue('--ui-gray-dark');
|
||||
|
||||
const segmentationSelectStyles = {
|
||||
singleValue: (base, state) => ({
|
||||
...base,
|
||||
width: '100%'
|
||||
}),
|
||||
control: (base, state) => ({
|
||||
...base,
|
||||
cursor: 'pointer',
|
||||
|
||||
+26
-22
@@ -4,7 +4,7 @@ import { Range } from '@ohif/ui';
|
||||
|
||||
import './SegmentationSettings.css';
|
||||
|
||||
const SegmentationSettings = ({ configuration, onBack, onChange }) => {
|
||||
const SegmentationSettings = ({ configuration, onBack, onChange, disabledFields = [] }) => {
|
||||
const [state, setState] = useState({
|
||||
renderFill: configuration.renderFill,
|
||||
renderOutline: configuration.renderOutline,
|
||||
@@ -70,28 +70,32 @@ const SegmentationSettings = ({ configuration, onBack, onChange }) => {
|
||||
/>
|
||||
{state.renderOutline && (
|
||||
<>
|
||||
<CustomRange
|
||||
value={state.outlineAlpha * 100}
|
||||
label="Opacity"
|
||||
showPercentage
|
||||
step={1}
|
||||
min={0}
|
||||
max={100}
|
||||
onChange={event => save('outlineAlpha', toFloat(event.target.value))}
|
||||
/>
|
||||
<CustomRange
|
||||
value={state.outlineWidth}
|
||||
label="Width"
|
||||
showValue
|
||||
step={1}
|
||||
min={0}
|
||||
max={5}
|
||||
onChange={event => save('outlineWidth', parseInt(event.target.value))}
|
||||
/>
|
||||
{!disabledFields.includes('outlineAlpha') && (
|
||||
<CustomRange
|
||||
value={state.outlineAlpha * 100}
|
||||
label="Opacity"
|
||||
showPercentage
|
||||
step={1}
|
||||
min={0}
|
||||
max={100}
|
||||
onChange={event => save('outlineAlpha', toFloat(event.target.value))}
|
||||
/>
|
||||
)}
|
||||
{!disabledFields.includes('outlineWidth') && (
|
||||
<CustomRange
|
||||
value={state.outlineWidth}
|
||||
label="Width"
|
||||
showValue
|
||||
step={1}
|
||||
min={0}
|
||||
max={5}
|
||||
onChange={event => save('outlineWidth', parseInt(event.target.value))}
|
||||
/>
|
||||
)}
|
||||
</>
|
||||
)}
|
||||
</div>
|
||||
{(state.renderFill || state.renderOutline) && (
|
||||
{(state.renderFill || state.renderOutline) && !disabledFields.includes('shouldRenderInactiveLabelmaps') && (
|
||||
<div
|
||||
className="settings-group"
|
||||
style={{ marginBottom: state.shouldRenderInactiveLabelmaps ? 15 : 0 }}
|
||||
@@ -103,7 +107,7 @@ const SegmentationSettings = ({ configuration, onBack, onChange }) => {
|
||||
/>
|
||||
{state.shouldRenderInactiveLabelmaps && (
|
||||
<>
|
||||
{state.renderFill && (
|
||||
{state.renderFill && !disabledFields.includes('fillAlphaInactive') && (
|
||||
<CustomRange
|
||||
label="Fill Opacity"
|
||||
showPercentage
|
||||
@@ -114,7 +118,7 @@ const SegmentationSettings = ({ configuration, onBack, onChange }) => {
|
||||
onChange={event => save('fillAlphaInactive', toFloat(event.target.value))}
|
||||
/>
|
||||
)}
|
||||
{state.renderOutline && (
|
||||
{state.renderOutline && !disabledFields.includes('outlineAlphaInactive') && (
|
||||
<CustomRange
|
||||
label="Outline Opacity"
|
||||
showPercentage
|
||||
|
||||
@@ -0,0 +1,64 @@
|
||||
import { MODULE_TYPES, utils } from '@ohif/core';
|
||||
import loadSegmentation from './loadSegmentation';
|
||||
|
||||
// TODO: Should probably use dcmjs for this
|
||||
const SOP_CLASS_UIDS = {
|
||||
DICOM_SEG: '1.2.840.10008.5.1.4.1.1.66.4',
|
||||
};
|
||||
|
||||
const sopClassUIDs = Object.values(SOP_CLASS_UIDS);
|
||||
|
||||
export default function getSopClassHandlerModule({ servicesManager }) {
|
||||
// TODO: Handle the case where there is more than one SOP Class Handler for the
|
||||
// same SOP Class.
|
||||
return {
|
||||
id: 'OHIFDicomSegSopClassHandler',
|
||||
type: MODULE_TYPES.SOP_CLASS_HANDLER,
|
||||
sopClassUIDs,
|
||||
getDisplaySetFromSeries: function(
|
||||
series,
|
||||
study,
|
||||
dicomWebClient,
|
||||
authorizationHeaders
|
||||
) {
|
||||
const instance = series.getFirstInstance();
|
||||
const metadata = instance.getData().metadata;
|
||||
|
||||
const {
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SeriesDescription,
|
||||
FrameOfReferenceUID,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
} = metadata;
|
||||
|
||||
const segDisplaySet = {
|
||||
Modality: 'SEG',
|
||||
displaySetInstanceUID: utils.guid(),
|
||||
wadoRoot: study.getData().wadoRoot,
|
||||
wadoUri: instance.getData().wadouri,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
FrameOfReferenceUID,
|
||||
authorizationHeaders,
|
||||
metadata,
|
||||
isDerived: true,
|
||||
referencedDisplaySetUID: null, // Assigned when loaded.
|
||||
labelmapIndex: null, // Assigned when loaded.
|
||||
isLoaded: false,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SeriesDescription,
|
||||
};
|
||||
|
||||
segDisplaySet.load = function(referencedDisplaySet, studies) {
|
||||
return loadSegmentation(segDisplaySet, referencedDisplaySet, studies);
|
||||
};
|
||||
|
||||
return segDisplaySet;
|
||||
},
|
||||
};
|
||||
}
|
||||
@@ -1,7 +1,9 @@
|
||||
import React from 'react';
|
||||
|
||||
import init from './init.js';
|
||||
import toolbarModule from './toolbarModule.js';
|
||||
import panelModule from './panelModule.js';
|
||||
import sopClassHandlerModule from './OHIFDicomSegSopClassHandler.js';
|
||||
import getSopClassHandlerModule from './getOHIFDicomSegSopClassHandler.js';
|
||||
import SegmentationPanel from './components/SegmentationPanel/SegmentationPanel.js';
|
||||
|
||||
export default {
|
||||
/**
|
||||
@@ -21,10 +23,97 @@ export default {
|
||||
getToolbarModule({ servicesManager }) {
|
||||
return toolbarModule;
|
||||
},
|
||||
getPanelModule({ servicesManager }) {
|
||||
return panelModule;
|
||||
},
|
||||
getSopClassHandlerModule({ servicesManager }) {
|
||||
return sopClassHandlerModule;
|
||||
getPanelModule({ commandsManager, api, servicesManager }) {
|
||||
const { UINotificationService } = servicesManager.services;
|
||||
|
||||
const ExtendedSegmentationPanel = props => {
|
||||
const { activeContexts } = api.hooks.useAppContext();
|
||||
|
||||
const onDisplaySetLoadFailureHandler = error => {
|
||||
UINotificationService.show({
|
||||
title: 'DICOM Segmentation Loader',
|
||||
message: error.message,
|
||||
type: 'error',
|
||||
autoClose: false,
|
||||
});
|
||||
};
|
||||
|
||||
const segmentItemClickHandler = data => {
|
||||
commandsManager.runCommand('jumpToImage', data);
|
||||
commandsManager.runCommand('jumpToSlice', data);
|
||||
};
|
||||
|
||||
const onSegmentVisibilityChangeHandler = (segmentNumber, visible) => {
|
||||
commandsManager.runCommand('setSegmentConfiguration', {
|
||||
segmentNumber,
|
||||
visible,
|
||||
});
|
||||
};
|
||||
|
||||
const onConfigurationChangeHandler = configuration => {
|
||||
commandsManager.runCommand('setSegmentationConfiguration', {
|
||||
globalOpacity: configuration.fillAlpha,
|
||||
outlineThickness: configuration.outlineWidth,
|
||||
renderOutline: configuration.renderOutline,
|
||||
visible: configuration.renderFill,
|
||||
});
|
||||
};
|
||||
|
||||
const onSelectedSegmentationChangeHandler = () => {
|
||||
commandsManager.runCommand('requestNewSegmentation');
|
||||
};
|
||||
|
||||
return (
|
||||
<SegmentationPanel
|
||||
{...props}
|
||||
activeContexts={activeContexts}
|
||||
contexts={api.contexts}
|
||||
onSegmentItemClick={segmentItemClickHandler}
|
||||
onSegmentVisibilityChange={onSegmentVisibilityChangeHandler}
|
||||
onConfigurationChange={onConfigurationChangeHandler}
|
||||
onSelectedSegmentationChange={onSelectedSegmentationChangeHandler}
|
||||
onDisplaySetLoadFailure={onDisplaySetLoadFailureHandler}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
return {
|
||||
menuOptions: [
|
||||
{
|
||||
icon: 'list',
|
||||
label: 'Segmentations',
|
||||
target: 'segmentation-panel',
|
||||
isDisabled: studies => {
|
||||
if (!studies) {
|
||||
return true;
|
||||
}
|
||||
|
||||
for (let i = 0; i < studies.length; i++) {
|
||||
const study = studies[i];
|
||||
|
||||
if (study && study.series) {
|
||||
for (let j = 0; j < study.series.length; j++) {
|
||||
const series = study.series[j];
|
||||
|
||||
if (series.Modality === 'SEG') {
|
||||
return false;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return true;
|
||||
},
|
||||
},
|
||||
],
|
||||
components: [
|
||||
{
|
||||
id: 'segmentation-panel',
|
||||
component: ExtendedSegmentationPanel,
|
||||
},
|
||||
],
|
||||
defaultContext: ['VIEWER'],
|
||||
};
|
||||
},
|
||||
getSopClassHandlerModule,
|
||||
};
|
||||
@@ -1,5 +1,5 @@
|
||||
import OHIF from '@ohif/core';
|
||||
import * as dcmjs from 'dcmjs';
|
||||
import dcmjs from 'dcmjs';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import cornerstoneTools from 'cornerstone-tools';
|
||||
|
||||
@@ -34,28 +34,59 @@ export default async function loadSegmentation(
|
||||
referencedDisplaySet.SeriesInstanceUID
|
||||
);
|
||||
|
||||
const results = _parseSeg(segArrayBuffer, imageIds);
|
||||
return new Promise((resolve, reject) => {
|
||||
let results;
|
||||
|
||||
if (!results) {
|
||||
throw new Error('Fractional segmentations are not yet supported');
|
||||
}
|
||||
try {
|
||||
results = _parseSeg(segArrayBuffer, imageIds);
|
||||
} catch (error) {
|
||||
segDisplaySet.isLoaded = false;
|
||||
segDisplaySet.loadError = true;
|
||||
reject(error);
|
||||
}
|
||||
|
||||
const { labelmapBuffer, segMetadata, segmentsOnFrame } = results;
|
||||
const { setters } = cornerstoneTools.getModule('segmentation');
|
||||
const { labelmapBuffer, segMetadata, segmentsOnFrame } = results;
|
||||
const { setters } = cornerstoneTools.getModule('segmentation');
|
||||
|
||||
// TODO: Could define a color LUT based on colors in the SEG.
|
||||
const labelmapIndex = _getNextLabelmapIndex(imageIds[0]);
|
||||
// TODO: Could define a color LUT based on colors in the SEG.
|
||||
const labelmapIndex = _getNextLabelmapIndex(imageIds[0]);
|
||||
const colorLUTIndex = _makeColorLUTAndGetIndex(segMetadata);
|
||||
|
||||
setters.labelmap3DByFirstImageId(
|
||||
imageIds[0],
|
||||
labelmapBuffer,
|
||||
labelmapIndex,
|
||||
segMetadata,
|
||||
imageIds.length,
|
||||
segmentsOnFrame
|
||||
);
|
||||
setters.labelmap3DByFirstImageId(
|
||||
imageIds[0],
|
||||
labelmapBuffer,
|
||||
labelmapIndex,
|
||||
segMetadata,
|
||||
imageIds.length,
|
||||
segmentsOnFrame,
|
||||
colorLUTIndex
|
||||
);
|
||||
|
||||
segDisplaySet.labelmapIndex = labelmapIndex;
|
||||
segDisplaySet.labelmapIndex = labelmapIndex;
|
||||
|
||||
/*
|
||||
* TODO: Improve the way we notify parts of the app that depends on segs to be loaded.
|
||||
*
|
||||
* Currently we are using a non-ideal implementation through a custom event to notify the segmentation panel
|
||||
* or other components that could rely on loaded segmentations that
|
||||
* the segments were loaded so that e.g. when the user opens the panel
|
||||
* before the segments are fully loaded, the panel can subscribe to this custom event
|
||||
* and update itself with the new segments.
|
||||
*
|
||||
* This limitation is due to the fact that the cs segmentation module is an object (which will be
|
||||
* updated after the segments are loaded) that React its not aware of its changes
|
||||
* because the module object its not passed in to the panel component as prop but accessed externally.
|
||||
*
|
||||
* Improving this event approach to something reactive that can be tracked inside the react lifecycle,
|
||||
* allows us to easily watch the module or the segmentations loading process in any other component
|
||||
* without subscribing to external events.
|
||||
*/
|
||||
console.log('Segmentation loaded.');
|
||||
const event = new CustomEvent('extensiondicomsegmentationsegloaded');
|
||||
document.dispatchEvent(event);
|
||||
|
||||
resolve(labelmapIndex);
|
||||
});
|
||||
}
|
||||
|
||||
function _getNextLabelmapIndex(firstImageId) {
|
||||
@@ -79,6 +110,69 @@ function _getNextLabelmapIndex(firstImageId) {
|
||||
return labelmapIndex;
|
||||
}
|
||||
|
||||
function _makeColorLUTAndGetIndex(segMetadata) {
|
||||
const { setters, state } = cornerstoneTools.getModule('segmentation');
|
||||
const { colorLutTables } = state;
|
||||
const colorLUTIndex = _getNextColorLUTIndex();
|
||||
|
||||
const { data } = segMetadata;
|
||||
|
||||
if (
|
||||
!data.some(
|
||||
segment =>
|
||||
segment &&
|
||||
(segment.ROIDisplayColor || segment.RecommendedDisplayCIELabValue)
|
||||
)
|
||||
) {
|
||||
// Use default cornerstoneTools colorLUT.
|
||||
return 0;
|
||||
}
|
||||
|
||||
const colorLUT = [];
|
||||
|
||||
for (let i = 0; i < data.length; i++) {
|
||||
const segment = data[i];
|
||||
if (!segment) {
|
||||
continue;
|
||||
}
|
||||
|
||||
const { ROIDisplayColor, RecommendedDisplayCIELabValue } = segment;
|
||||
|
||||
if (RecommendedDisplayCIELabValue) {
|
||||
const rgb = dcmjs.data.Colors.dicomlab2RGB(
|
||||
RecommendedDisplayCIELabValue
|
||||
).map(x => Math.round(x * 255));
|
||||
|
||||
colorLUT[i] = [...rgb, 255];
|
||||
} else if (ROIDisplayColor) {
|
||||
colorLUT[i] = [...ROIDisplayColor, 255];
|
||||
} else {
|
||||
colorLUT[i] = [...colorLutTables[0][i]];
|
||||
}
|
||||
}
|
||||
|
||||
colorLUT.shift();
|
||||
setters.colorLUT(colorLUTIndex, colorLUT);
|
||||
|
||||
return colorLUTIndex;
|
||||
}
|
||||
|
||||
function _getNextColorLUTIndex() {
|
||||
const { state } = cornerstoneTools.getModule('segmentation');
|
||||
const { colorLutTables } = state;
|
||||
|
||||
let colorLUTIndex = colorLutTables.length;
|
||||
|
||||
for (let i = 0; i < colorLutTables.length; i++) {
|
||||
if (!colorLutTables[i]) {
|
||||
colorLUTIndex = i;
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
return colorLUTIndex;
|
||||
}
|
||||
|
||||
function _parseSeg(arrayBuffer, imageIds) {
|
||||
return dcmjs.adapters.Cornerstone.Segmentation.generateToolState(
|
||||
imageIds,
|
||||
|
||||
@@ -1,39 +0,0 @@
|
||||
import SegmentationPanel from './components/SegmentationPanel/SegmentationPanel.js';
|
||||
|
||||
export default {
|
||||
menuOptions: [
|
||||
{
|
||||
icon: 'list',
|
||||
label: 'Segmentations',
|
||||
target: 'segmentation-panel',
|
||||
isDisabled: studies => {
|
||||
if (!studies) {
|
||||
return true;
|
||||
}
|
||||
|
||||
for (let i = 0; i < studies.length; i++) {
|
||||
const study = studies[i];
|
||||
|
||||
if (study && study.series) {
|
||||
for (let j = 0; j < study.series.length; j++) {
|
||||
const series = study.series[j];
|
||||
|
||||
if (series.Modality === 'SEG') {
|
||||
return false;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return true;
|
||||
},
|
||||
},
|
||||
],
|
||||
components: [
|
||||
{
|
||||
id: 'segmentation-panel',
|
||||
component: SegmentationPanel,
|
||||
},
|
||||
],
|
||||
defaultContext: ['VIEWER'],
|
||||
};
|
||||
@@ -3,6 +3,192 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.6.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.6...@ohif/extension-vtk@1.6.7) (2020-07-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.6.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.5...@ohif/extension-vtk@1.6.6) (2020-07-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.6.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.4...@ohif/extension-vtk@1.6.5) (2020-07-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.6.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.3...@ohif/extension-vtk@1.6.4) (2020-06-18)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.6.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.2...@ohif/extension-vtk@1.6.3) (2020-06-15)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Disable seg panel when data for seg unavailable ([#1732](https://github.com/OHIF/Viewers/issues/1732)) ([698e900](https://github.com/OHIF/Viewers/commit/698e900b85121d3c2a46747c443ef69fb7a8c95b)), closes [#1728](https://github.com/OHIF/Viewers/issues/1728)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.6.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.1...@ohif/extension-vtk@1.6.2) (2020-06-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.6.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.0...@ohif/extension-vtk@1.6.1) (2020-06-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.6.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.5.6...@ohif/extension-vtk@1.6.0) (2020-06-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 1729 - error boundary wrapper ([#1764](https://github.com/OHIF/Viewers/issues/1764)) ([c02b232](https://github.com/OHIF/Viewers/commit/c02b232b0cc24f38af5d5e3831d987d048e60ada))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.5.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.5.5...@ohif/extension-vtk@1.5.6) (2020-05-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.5.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.5.4...@ohif/extension-vtk@1.5.5) (2020-05-12)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Fix seg color load ([#1724](https://github.com/OHIF/Viewers/issues/1724)) ([c4f84b1](https://github.com/OHIF/Viewers/commit/c4f84b1174d04ba84d37ed89b6d7ab541be28181))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.5.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.5.3...@ohif/extension-vtk@1.5.4) (2020-05-06)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.5.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.5.2...@ohif/extension-vtk@1.5.3) (2020-05-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.5.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.5.1...@ohif/extension-vtk@1.5.2) (2020-05-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.5.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.5.0...@ohif/extension-vtk@1.5.1) (2020-04-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.5.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.4.1...@ohif/extension-vtk@1.5.0) (2020-04-24)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Seg jump to slice + show/hide ([835f64d](https://github.com/OHIF/Viewers/commit/835f64d47a9994f6a25aaf3941a4974e215e7e7f))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.4.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.4.0...@ohif/extension-vtk@1.4.1) (2020-04-23)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.4.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.3.14...@ohif/extension-vtk@1.4.0) (2020-04-23)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* configuration to hook into XHR Error handling ([e96205d](https://github.com/OHIF/Viewers/commit/e96205de35e5bec14dc8a9a8509db3dd4e6ecdb6))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.3.13...@ohif/extension-vtk@1.3.14) (2020-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.3.12...@ohif/extension-vtk@1.3.13) (2020-04-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.3.11...@ohif/extension-vtk@1.3.12) (2020-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.3.10...@ohif/extension-vtk@1.3.11) (2020-04-09)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* Revert "refactor: Reduce bundle size ([#1575](https://github.com/OHIF/Viewers/issues/1575))" ([#1622](https://github.com/OHIF/Viewers/issues/1622)) ([d21af3f](https://github.com/OHIF/Viewers/commit/d21af3f133492fa31492413b8782936c9ff18b44))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.3.9...@ohif/extension-vtk@1.3.10) (2020-04-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-vtk",
|
||||
"version": "1.3.10",
|
||||
"version": "1.6.7",
|
||||
"description": "OHIF extension for VTK.js",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -33,9 +33,9 @@
|
||||
"@ohif/i18n": "^0.50.0",
|
||||
"@ohif/ui": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "4.12.5",
|
||||
"cornerstone-wado-image-loader": "^3.0.0",
|
||||
"dcmjs": "^0.10.1",
|
||||
"cornerstone-tools": "4.15.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dcmjs": "0.16.0",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"i18next": "^17.0.3",
|
||||
"i18next-browser-languagedetector": "^3.0.1",
|
||||
@@ -50,13 +50,13 @@
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"lodash.throttle": "^4.1.1",
|
||||
"react-vtkjs-viewport": "^0.8.3"
|
||||
"react-vtkjs-viewport": "^0.9.0"
|
||||
},
|
||||
"devDependencies": {
|
||||
"@ohif/core": "^2.6.9",
|
||||
"@ohif/ui": "^1.4.3",
|
||||
"cornerstone-tools": "4.12.5",
|
||||
"cornerstone-wado-image-loader": "^3.0.0",
|
||||
"@ohif/core": "^2.9.12",
|
||||
"@ohif/ui": "^1.5.1",
|
||||
"cornerstone-tools": "4.15.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"gh-pages": "^2.0.1",
|
||||
"i18next": "^17.0.3",
|
||||
|
||||
@@ -32,16 +32,16 @@ class LoadingIndicator extends PureComponent {
|
||||
</div>
|
||||
</div>
|
||||
) : (
|
||||
<div className="imageViewerLoadingIndicator loadingIndicator">
|
||||
<div className="indicatorContents">
|
||||
<p>
|
||||
{this.props.t('Reformatting')}...
|
||||
<i className="fa fa-spin fa-circle-o-notch fa-fw" />
|
||||
{percComplete}
|
||||
</p>
|
||||
<div className="imageViewerLoadingIndicator loadingIndicator">
|
||||
<div className="indicatorContents">
|
||||
<p>
|
||||
{this.props.t('Loading...')}
|
||||
<i className="fa fa-spin fa-circle-o-notch fa-fw" />
|
||||
{percComplete}
|
||||
</p>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
)}
|
||||
)}
|
||||
</React.Fragment>
|
||||
);
|
||||
}
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
import React, { Component } from 'react';
|
||||
import { getReactVtkjsViewport } from './utils/getReactVtkjsViewport';
|
||||
import { getImageData, loadImageData } from 'react-vtkjs-viewport';
|
||||
import ConnectedVTKViewport from './ConnectedVTKViewport';
|
||||
import LoadingIndicator from './LoadingIndicator.js';
|
||||
import OHIF from '@ohif/core';
|
||||
@@ -49,7 +49,7 @@ class OHIFVTKViewport extends Component {
|
||||
state = {
|
||||
volumes: null,
|
||||
paintFilterLabelMapImageData: null,
|
||||
paintFilterBackgroundImageData: null,
|
||||
paintFilterBackgroundImageData: null
|
||||
};
|
||||
|
||||
static propTypes = {
|
||||
@@ -133,8 +133,7 @@ class OHIFVTKViewport extends Component {
|
||||
displaySetInstanceUID,
|
||||
SOPClassUID,
|
||||
SOPInstanceUID,
|
||||
frameIndex,
|
||||
reactVtkjsViewport
|
||||
frameIndex
|
||||
) => {
|
||||
const stack = OHIFVTKViewport.getCornerstoneStack(
|
||||
studies,
|
||||
@@ -145,10 +144,7 @@ class OHIFVTKViewport extends Component {
|
||||
frameIndex
|
||||
);
|
||||
|
||||
const imageDataObject = reactVtkjsViewport.getImageData(
|
||||
stack.imageIds,
|
||||
displaySetInstanceUID
|
||||
);
|
||||
const imageDataObject = getImageData(stack.imageIds, displaySetInstanceUID);
|
||||
let labelmapDataObject;
|
||||
let labelmapColorLUT;
|
||||
|
||||
@@ -160,6 +156,10 @@ class OHIFVTKViewport extends Component {
|
||||
const { activeLabelmapIndex } = brushStackState;
|
||||
const labelmap3D = brushStackState.labelmaps3D[activeLabelmapIndex];
|
||||
|
||||
this.segmentsDefaultProperties = labelmap3D.segmentsHidden.map(isHidden => {
|
||||
return { visible: !isHidden };
|
||||
});
|
||||
|
||||
const vtkLabelmapID = `${firstImageId}_${activeLabelmapIndex}`;
|
||||
|
||||
if (labelmapCache[vtkLabelmapID]) {
|
||||
@@ -261,9 +261,7 @@ class OHIFVTKViewport extends Component {
|
||||
return volumeActor;
|
||||
}
|
||||
|
||||
async setStateFromProps() {
|
||||
const reactVtkjsViewport = await getReactVtkjsViewport();
|
||||
|
||||
setStateFromProps() {
|
||||
const { studies, displaySet } = this.props.viewportData;
|
||||
const {
|
||||
StudyInstanceUID,
|
||||
@@ -301,10 +299,8 @@ class OHIFVTKViewport extends Component {
|
||||
studies,
|
||||
StudyInstanceUID,
|
||||
displaySetInstanceUID,
|
||||
sopClassUIDs[0],
|
||||
SOPInstanceUID,
|
||||
frameIndex,
|
||||
reactVtkjsViewport
|
||||
frameIndex
|
||||
);
|
||||
|
||||
this.imageDataObject = imageDataObject;
|
||||
@@ -325,7 +321,7 @@ class OHIFVTKViewport extends Component {
|
||||
dataDetails,
|
||||
},
|
||||
() => {
|
||||
this.loadProgressively(imageDataObject, reactVtkjsViewport);
|
||||
this.loadProgressively(imageDataObject);
|
||||
|
||||
// TODO: There must be a better way to do this.
|
||||
// We do this so that if all the data is available the react-vtkjs-viewport
|
||||
@@ -343,11 +339,11 @@ class OHIFVTKViewport extends Component {
|
||||
);
|
||||
}
|
||||
|
||||
async componentDidMount() {
|
||||
await this.setStateFromProps();
|
||||
componentDidMount() {
|
||||
this.setStateFromProps();
|
||||
}
|
||||
|
||||
async componentDidUpdate(prevProps) {
|
||||
componentDidUpdate(prevProps, prevState) {
|
||||
const { displaySet } = this.props.viewportData;
|
||||
const prevDisplaySet = prevProps.viewportData.displaySet;
|
||||
|
||||
@@ -357,12 +353,12 @@ class OHIFVTKViewport extends Component {
|
||||
displaySet.SOPInstanceUID !== prevDisplaySet.SOPInstanceUID ||
|
||||
displaySet.frameIndex !== prevDisplaySet.frameIndex
|
||||
) {
|
||||
await this.setStateFromProps();
|
||||
this.setStateFromProps();
|
||||
}
|
||||
}
|
||||
|
||||
loadProgressively(imageDataObject, reactVtkjsViewport) {
|
||||
reactVtkjsViewport.loadImageData(imageDataObject);
|
||||
loadProgressively(imageDataObject) {
|
||||
loadImageData(imageDataObject);
|
||||
|
||||
const { isLoading, insertPixelDataPromises } = imageDataObject;
|
||||
|
||||
@@ -413,10 +409,6 @@ class OHIFVTKViewport extends Component {
|
||||
|
||||
const style = { width: '100%', height: '100%', position: 'relative' };
|
||||
|
||||
const visible = configuration.renderFill || configuration.renderOutline;
|
||||
const opacity = configuration.fillAlpha;
|
||||
const outlineThickness = configuration.outlineThickness;
|
||||
|
||||
return (
|
||||
<>
|
||||
<div style={style}>
|
||||
@@ -436,10 +428,14 @@ class OHIFVTKViewport extends Component {
|
||||
dataDetails={this.state.dataDetails}
|
||||
labelmapRenderingOptions={{
|
||||
colorLUT: this.state.labelmapColorLUT,
|
||||
globalOpacity: opacity,
|
||||
visible,
|
||||
outlineThickness,
|
||||
renderOutline: true,
|
||||
globalOpacity: configuration.fillAlpha,
|
||||
visible: configuration.renderFill,
|
||||
outlineThickness: configuration.outlineWidth,
|
||||
renderOutline: configuration.renderOutline,
|
||||
segmentsDefaultProperties: this.segmentsDefaultProperties,
|
||||
onNewSegmentationRequested: () => {
|
||||
this.setStateFromProps();
|
||||
}
|
||||
}}
|
||||
onScroll={this.props.onScroll}
|
||||
/>
|
||||
|
||||
@@ -1,16 +1,9 @@
|
||||
import React, { useEffect, useCallback } from 'react';
|
||||
// import { View2D } from 'react-vtkjs-viewport';
|
||||
import { View2D } from 'react-vtkjs-viewport';
|
||||
import PropTypes from 'prop-types';
|
||||
import asyncComponent from './asyncComponent.js';
|
||||
import { getReactVtkjsViewport } from './utils/getReactVtkjsViewport';
|
||||
|
||||
import './VTKViewport.css';
|
||||
|
||||
const View2D = asyncComponent(async () => {
|
||||
const reactVtkjsViewport = await getReactVtkjsViewport();
|
||||
return { default: reactVtkjsViewport.View2D };
|
||||
});
|
||||
|
||||
const VTKViewport = props => {
|
||||
const style = { width: '100%', height: '100%', position: 'relative' };
|
||||
|
||||
@@ -59,7 +52,7 @@ VTKViewport.propTypes = {
|
||||
};
|
||||
|
||||
VTKViewport.defaultProps = {
|
||||
onScroll: () => { },
|
||||
onScroll: () => {},
|
||||
};
|
||||
|
||||
export default VTKViewport;
|
||||
@@ -1,9 +1,17 @@
|
||||
import throttle from 'lodash.throttle';
|
||||
import { getReactVtkjsViewport } from './utils/getReactVtkjsViewport';
|
||||
|
||||
import {
|
||||
vtkInteractorStyleMPRCrosshairs,
|
||||
vtkInteractorStyleMPRWindowLevel,
|
||||
vtkInteractorStyleMPRRotate,
|
||||
vtkSVGCrosshairsWidget,
|
||||
} from 'react-vtkjs-viewport';
|
||||
import { getImageData } from 'react-vtkjs-viewport';
|
||||
import { vec3 } from 'gl-matrix';
|
||||
import setMPRLayout from './utils/setMPRLayout.js';
|
||||
import setViewportToVTK from './utils/setViewportToVTK.js';
|
||||
import Constants from 'vtk.js/Sources/Rendering/Core/VolumeMapper/Constants.js';
|
||||
import OHIFVTKViewport from './OHIFVTKViewport';
|
||||
import vtkCoordinate from 'vtk.js/Sources/Rendering/Core/Coordinate';
|
||||
|
||||
const { BlendMode } = Constants;
|
||||
|
||||
@@ -29,7 +37,6 @@ const commandsModule = ({ commandsManager }) => {
|
||||
}
|
||||
|
||||
const displaySet = viewportSpecificData[activeViewportIndex];
|
||||
|
||||
let api;
|
||||
if (!api) {
|
||||
try {
|
||||
@@ -94,6 +101,20 @@ const commandsModule = ({ commandsManager }) => {
|
||||
});
|
||||
}
|
||||
|
||||
const _convertModelToWorldSpace = (position, vtkImageData) => {
|
||||
const indexToWorld = vtkImageData.getIndexToWorld();
|
||||
const pos = vec3.create();
|
||||
|
||||
position[0] += 0.5; /* Move to the centre of the voxel. */
|
||||
position[1] += 0.5; /* Move to the centre of the voxel. */
|
||||
position[2] += 0.5; /* Move to the centre of the voxel. */
|
||||
|
||||
vec3.set(pos, position[0], position[1], position[2]);
|
||||
vec3.transformMat4(pos, pos, indexToWorld);
|
||||
|
||||
return pos;
|
||||
};
|
||||
|
||||
const actions = {
|
||||
getVtkApis: ({ index }) => {
|
||||
return apis[index];
|
||||
@@ -119,18 +140,129 @@ const commandsModule = ({ commandsManager }) => {
|
||||
|
||||
_setView(api, [0, 1, 0], [0, 0, 1]);
|
||||
},
|
||||
enableRotateTool: async () => {
|
||||
const reactVtkjsViewport = await getReactVtkjsViewport();
|
||||
requestNewSegmentation: async ({ viewports }) => {
|
||||
const allViewports = Object.values(viewports.viewportSpecificData);
|
||||
const promises = allViewports.map(async (viewport, viewportIndex) => {
|
||||
let api = apis[viewportIndex];
|
||||
|
||||
if (!api) {
|
||||
api = await _getActiveViewportVTKApi(viewports);
|
||||
apis[viewportIndex] = api;
|
||||
}
|
||||
|
||||
api.requestNewSegmentation();
|
||||
api.updateImage();
|
||||
});
|
||||
await Promise.all(promises);
|
||||
},
|
||||
jumpToSlice: async ({
|
||||
viewports,
|
||||
studies,
|
||||
StudyInstanceUID,
|
||||
displaySetInstanceUID,
|
||||
SOPClassUID,
|
||||
SOPInstanceUID,
|
||||
segmentNumber,
|
||||
frameIndex,
|
||||
frame,
|
||||
done = () => { }
|
||||
}) => {
|
||||
let api = apis[viewports.activeViewportIndex];
|
||||
|
||||
if (!api) {
|
||||
api = await _getActiveViewportVTKApi(viewports);
|
||||
apis[viewports.activeViewportIndex] = api;
|
||||
}
|
||||
|
||||
const stack = OHIFVTKViewport.getCornerstoneStack(
|
||||
studies,
|
||||
StudyInstanceUID,
|
||||
displaySetInstanceUID,
|
||||
SOPClassUID,
|
||||
SOPInstanceUID,
|
||||
frameIndex,
|
||||
);
|
||||
|
||||
const imageDataObject = getImageData(stack.imageIds, displaySetInstanceUID);
|
||||
|
||||
let pixelIndex = 0;
|
||||
let x = 0;
|
||||
let y = 0;
|
||||
let count = 0;
|
||||
|
||||
const rows = imageDataObject.dimensions[1];
|
||||
const cols = imageDataObject.dimensions[0];
|
||||
|
||||
for (let j = 0; j < rows; j++) {
|
||||
for (let i = 0; i < cols; i++) {
|
||||
// [i, j] =
|
||||
const pixel = frame.pixelData[pixelIndex];
|
||||
if (pixel === segmentNumber) {
|
||||
x += i;
|
||||
y += j;
|
||||
count++;
|
||||
}
|
||||
pixelIndex++;
|
||||
}
|
||||
}
|
||||
x /= count;
|
||||
y /= count;
|
||||
|
||||
const position = [x, y, frameIndex];
|
||||
const worldPos = _convertModelToWorldSpace(position, imageDataObject.vtkImageData);
|
||||
|
||||
api.svgWidgets.crosshairsWidget.moveCrosshairs(worldPos, apis);
|
||||
done();
|
||||
},
|
||||
setSegmentationConfiguration: async ({
|
||||
viewports,
|
||||
globalOpacity,
|
||||
visible,
|
||||
renderOutline,
|
||||
outlineThickness,
|
||||
}) => {
|
||||
const allViewports = Object.values(viewports.viewportSpecificData);
|
||||
const promises = allViewports.map(async (viewport, viewportIndex) => {
|
||||
let api = apis[viewportIndex];
|
||||
|
||||
if (!api) {
|
||||
api = await _getActiveViewportVTKApi(viewports);
|
||||
apis[viewportIndex] = api;
|
||||
}
|
||||
|
||||
api.setGlobalOpacity(globalOpacity);
|
||||
api.setVisibility(visible);
|
||||
api.setOutlineThickness(outlineThickness);
|
||||
api.setOutlineRendering(renderOutline);
|
||||
api.updateImage();
|
||||
});
|
||||
await Promise.all(promises);
|
||||
},
|
||||
setSegmentConfiguration: async ({ viewports, visible, segmentNumber }) => {
|
||||
const allViewports = Object.values(viewports.viewportSpecificData);
|
||||
const promises = allViewports.map(async (viewport, viewportIndex) => {
|
||||
let api = apis[viewportIndex];
|
||||
|
||||
if (!api) {
|
||||
api = await _getActiveViewportVTKApi(viewports);
|
||||
apis[viewportIndex] = api;
|
||||
}
|
||||
|
||||
api.setSegmentVisibility(segmentNumber, visible);
|
||||
api.updateImage();
|
||||
});
|
||||
await Promise.all(promises);
|
||||
},
|
||||
enableRotateTool: () => {
|
||||
apis.forEach(api => {
|
||||
const istyle = reactVtkjsViewport.vtkInteractorStyleMPRRotate.newInstance();
|
||||
const istyle = vtkInteractorStyleMPRRotate.newInstance();
|
||||
|
||||
api.setInteractorStyle({ istyle });
|
||||
});
|
||||
},
|
||||
enableCrosshairsTool: async () => {
|
||||
const reactVtkjsViewport = await getReactVtkjsViewport();
|
||||
enableCrosshairsTool: () => {
|
||||
apis.forEach((api, apiIndex) => {
|
||||
const istyle = reactVtkjsViewport.vtkInteractorStyleMPRCrosshairs.newInstance();
|
||||
const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
|
||||
|
||||
api.setInteractorStyle({
|
||||
istyle,
|
||||
@@ -138,7 +270,7 @@ const commandsModule = ({ commandsManager }) => {
|
||||
});
|
||||
});
|
||||
},
|
||||
enableLevelTool: async () => {
|
||||
enableLevelTool: () => {
|
||||
function updateVOI(apis, windowWidth, windowCenter) {
|
||||
apis.forEach(api => {
|
||||
api.updateVOI(windowWidth, windowCenter);
|
||||
@@ -159,9 +291,8 @@ const commandsModule = ({ commandsManager }) => {
|
||||
},
|
||||
};
|
||||
|
||||
const reactVtkjsViewport = await getReactVtkjsViewport();
|
||||
apis.forEach(api => {
|
||||
const istyle = reactVtkjsViewport.vtkInteractorStyleMPRWindowLevel.newInstance();
|
||||
const istyle = vtkInteractorStyleMPRWindowLevel.newInstance();
|
||||
|
||||
api.setInteractorStyle({ istyle, callbacks });
|
||||
});
|
||||
@@ -258,15 +389,14 @@ const commandsModule = ({ commandsManager }) => {
|
||||
}
|
||||
|
||||
// Add widgets and set default interactorStyle of each viewport.
|
||||
const reactVtkjsViewport = await getReactVtkjsViewport();
|
||||
apis.forEach((api, apiIndex) => {
|
||||
api.addSVGWidget(
|
||||
reactVtkjsViewport.vtkSVGCrosshairsWidget.newInstance(),
|
||||
vtkSVGCrosshairsWidget.newInstance(),
|
||||
'crosshairsWidget'
|
||||
);
|
||||
|
||||
const uid = api.uid;
|
||||
const istyle = reactVtkjsViewport.vtkInteractorStyleMPRCrosshairs.newInstance();
|
||||
const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
|
||||
|
||||
api.setInteractorStyle({
|
||||
istyle,
|
||||
@@ -279,6 +409,26 @@ const commandsModule = ({ commandsManager }) => {
|
||||
window.vtkActions = actions;
|
||||
|
||||
const definitions = {
|
||||
requestNewSegmentation: {
|
||||
commandFn: actions.requestNewSegmentation,
|
||||
storeContexts: ['viewports'],
|
||||
options: {},
|
||||
},
|
||||
jumpToSlice: {
|
||||
commandFn: actions.jumpToSlice,
|
||||
storeContexts: ['viewports'],
|
||||
options: {},
|
||||
},
|
||||
setSegmentationConfiguration: {
|
||||
commandFn: actions.setSegmentationConfiguration,
|
||||
storeContexts: ['viewports'],
|
||||
options: {},
|
||||
},
|
||||
setSegmentConfiguration: {
|
||||
commandFn: actions.setSegmentConfiguration,
|
||||
storeContexts: ['viewports'],
|
||||
options: {},
|
||||
},
|
||||
axial: {
|
||||
commandFn: actions.axial,
|
||||
storeContexts: ['viewports'],
|
||||
|
||||
@@ -1,3 +1,4 @@
|
||||
import React from 'react';
|
||||
import asyncComponent from './asyncComponent.js';
|
||||
import commandsModule from './commandsModule.js';
|
||||
import toolbarModule from './toolbarModule.js';
|
||||
@@ -16,7 +17,8 @@ const vtkExtension = {
|
||||
id: 'vtk',
|
||||
|
||||
getViewportModule({ commandsManager }) {
|
||||
return withCommandsManager(OHIFVTKViewport, commandsManager);
|
||||
const ExtendedVTKViewport = props => <OHIFVTKViewport {...props} />;
|
||||
return withCommandsManager(ExtendedVTKViewport, commandsManager);
|
||||
},
|
||||
getToolbarModule() {
|
||||
return toolbarModule;
|
||||
|
||||
@@ -1,5 +0,0 @@
|
||||
export function getReactVtkjsViewport() {
|
||||
return import(
|
||||
/* webpackChunkName: "ReactVtkjsViewport" */ 'react-vtkjs-viewport'
|
||||
);
|
||||
}
|
||||
@@ -3,6 +3,197 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [2.9.12](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.11...@ohif/core@2.9.12) (2020-07-13)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 - Put guards in all places that a cornerstone re-render ([#1899](https://github.com/OHIF/Viewers/issues/1899)) ([451f7ea](https://github.com/OHIF/Viewers/commit/451f7eab9258e7a193eb362e0926b13aedc4b3c9))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.9.11](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.10...@ohif/core@2.9.11) (2020-07-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.9.10](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.9...@ohif/core@2.9.10) (2020-07-13)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Fix RT Panel hide/show and Fix looping load errors ([#1877](https://github.com/OHIF/Viewers/issues/1877)) ([e7cc735](https://github.com/OHIF/Viewers/commit/e7cc735c03d02eeb0d3af4ba02c15ed4f81bbec2))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.9.9](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.8...@ohif/core@2.9.9) (2020-06-18)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.9.8](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.7...@ohif/core@2.9.8) (2020-06-15)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Disable seg panel when data for seg unavailable ([#1732](https://github.com/OHIF/Viewers/issues/1732)) ([698e900](https://github.com/OHIF/Viewers/commit/698e900b85121d3c2a46747c443ef69fb7a8c95b)), closes [#1728](https://github.com/OHIF/Viewers/issues/1728)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.9.7](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.6...@ohif/core@2.9.7) (2020-06-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.9.6](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.5...@ohif/core@2.9.6) (2020-05-14)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Load default display set when no time metadata ([#1684](https://github.com/OHIF/Viewers/issues/1684)) ([f7b8b6a](https://github.com/OHIF/Viewers/commit/f7b8b6a41c4626084ef56b0fdf7363e914b143c4)), closes [#1683](https://github.com/OHIF/Viewers/issues/1683)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.9.5](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.4...@ohif/core@2.9.5) (2020-05-12)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Fix seg color load ([#1724](https://github.com/OHIF/Viewers/issues/1724)) ([c4f84b1](https://github.com/OHIF/Viewers/commit/c4f84b1174d04ba84d37ed89b6d7ab541be28181))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.9.4](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.3...@ohif/core@2.9.4) (2020-05-06)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.9.3](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.2...@ohif/core@2.9.3) (2020-05-04)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Proper error handling for derived display sets ([#1708](https://github.com/OHIF/Viewers/issues/1708)) ([5b20d8f](https://github.com/OHIF/Viewers/commit/5b20d8f323e4b3ef9988f2f2ab672d697b6da409))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.9.2](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.1...@ohif/core@2.9.2) (2020-05-04)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* use bit-appropriate array for palette lookup tables ([#1698](https://github.com/OHIF/Viewers/issues/1698)) ([7033886](https://github.com/OHIF/Viewers/commit/70338866978a76fa026c18d7c3c05257c5ece762))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.9.1](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.0...@ohif/core@2.9.1) (2020-04-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [2.9.0](https://github.com/OHIF/Viewers/compare/@ohif/core@2.8.1...@ohif/core@2.9.0) (2020-04-24)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Seg jump to slice + show/hide ([835f64d](https://github.com/OHIF/Viewers/commit/835f64d47a9994f6a25aaf3941a4974e215e7e7f))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.8.1](https://github.com/OHIF/Viewers/compare/@ohif/core@2.8.0...@ohif/core@2.8.1) (2020-04-23)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Multiframe fix ([#1661](https://github.com/OHIF/Viewers/issues/1661)) ([7120561](https://github.com/OHIF/Viewers/commit/71205618ecb8b592247c5acb32284bfe7e18fce5))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [2.8.0](https://github.com/OHIF/Viewers/compare/@ohif/core@2.7.1...@ohif/core@2.8.0) (2020-04-23)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* configuration to hook into XHR Error handling ([e96205d](https://github.com/OHIF/Viewers/commit/e96205de35e5bec14dc8a9a8509db3dd4e6ecdb6))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.7.1](https://github.com/OHIF/Viewers/compare/@ohif/core@2.7.0...@ohif/core@2.7.1) (2020-04-22)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* whiteLabeling should support component creation by passing React to defined fn ([#1659](https://github.com/OHIF/Viewers/issues/1659)) ([2093a00](https://github.com/OHIF/Viewers/commit/2093a0036584b2cc698c8f06fe62b334523b1029))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [2.7.0](https://github.com/OHIF/Viewers/compare/@ohif/core@2.6.11...@ohif/core@2.7.0) (2020-04-17)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* set the authorization header for DICOMWeb requests if provided in query string ([#1646](https://github.com/OHIF/Viewers/issues/1646)) ([450c80b](https://github.com/OHIF/Viewers/commit/450c80b9d5f172be8b5713b422370360325a0afc))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.6.11](https://github.com/OHIF/Viewers/compare/@ohif/core@2.6.10...@ohif/core@2.6.11) (2020-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.6.10](https://github.com/OHIF/Viewers/compare/@ohif/core@2.6.9...@ohif/core@2.6.10) (2020-04-09)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* Revert "refactor: Reduce bundle size ([#1575](https://github.com/OHIF/Viewers/issues/1575))" ([#1622](https://github.com/OHIF/Viewers/issues/1622)) ([d21af3f](https://github.com/OHIF/Viewers/commit/d21af3f133492fa31492413b8782936c9ff18b44))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.6.9](https://github.com/OHIF/Viewers/compare/@ohif/core@2.6.8...@ohif/core@2.6.9) (2020-04-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/core",
|
||||
"version": "2.6.9",
|
||||
"version": "2.9.12",
|
||||
"description": "Generic business logic for web-based medical imaging applications",
|
||||
"author": "OHIF Core Team",
|
||||
"license": "MIT",
|
||||
@@ -32,15 +32,15 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "4.12.5",
|
||||
"cornerstone-wado-image-loader": "^3.0.0",
|
||||
"cornerstone-tools": "4.15.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dicom-parser": "^1.8.3"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"ajv": "^6.10.0",
|
||||
"dcmjs": "^0.12.0",
|
||||
"dicomweb-client": "^0.5.2",
|
||||
"dcmjs": "0.16.0",
|
||||
"dicomweb-client": "^0.6.0",
|
||||
"immer": "6.0.2",
|
||||
"isomorphic-base64": "^1.0.2",
|
||||
"lodash.clonedeep": "^4.5.0",
|
||||
|
||||
@@ -1,10 +1,11 @@
|
||||
import * as dcmjs from 'dcmjs';
|
||||
import dcmjs from 'dcmjs';
|
||||
import { api } from 'dicomweb-client';
|
||||
|
||||
import DICOMWeb from '../DICOMWeb';
|
||||
import parseDicomStructuredReport from './parseDicomStructuredReport';
|
||||
import parseMeasurementsData from './parseMeasurementsData';
|
||||
import getAllDisplaySets from './utils/getAllDisplaySets';
|
||||
import errorHandler from '../errorHandler';
|
||||
|
||||
const VERSION_NAME = 'dcmjs-0.0';
|
||||
const TRANSFER_SYNTAX_UID = '1.2.840.10008.1.2.1';
|
||||
@@ -21,6 +22,7 @@ const retrieveMeasurementFromSR = async (series, studies, serverUrl) => {
|
||||
const config = {
|
||||
url: serverUrl,
|
||||
headers: DICOMWeb.getAuthorizationHeader(),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
};
|
||||
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
@@ -71,6 +73,7 @@ const stowSRFromMeasurements = async (measurements, serverUrl) => {
|
||||
const config = {
|
||||
url: serverUrl,
|
||||
headers: DICOMWeb.getAuthorizationHeader(),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
};
|
||||
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
import * as dcmjs from 'dcmjs';
|
||||
import dcmjs from 'dcmjs';
|
||||
|
||||
import findInstanceMetadataBySopInstanceUID from './utils/findInstanceMetadataBySopInstanceUid';
|
||||
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
import * as dcmjs from 'dcmjs';
|
||||
import dcmjs from 'dcmjs';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
|
||||
import log from '../log';
|
||||
|
||||
@@ -13,7 +13,7 @@ const findMostRecentStructuredReport = studies => {
|
||||
// Skip series that may not have instances yet
|
||||
// This can happen if we have retrieved just the initial
|
||||
// details about the series via QIDO-RS, but not the full metadata
|
||||
if (!series.instances.length) {
|
||||
if (!series.instances || !series.instances.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
import * as dcmjs from 'dcmjs';
|
||||
import dcmjs from 'dcmjs';
|
||||
|
||||
/**
|
||||
* Checks if dcmjs has support to determined tool
|
||||
|
||||
@@ -1,6 +1,3 @@
|
||||
// Commenting this out for now since it looks like Rollup is pulling in the
|
||||
// Node.js version instead of the Browser version of this package
|
||||
//import { btoa } from 'isomorphic-base64';
|
||||
import user from '../user';
|
||||
|
||||
/**
|
||||
@@ -18,6 +15,7 @@ export default function getAuthorizationHeader({ requestOptions } = {}) {
|
||||
// Check for OHIF.user since this can also be run on the server
|
||||
const accessToken = user && user.getAccessToken && user.getAccessToken();
|
||||
|
||||
// Auth for a specific server
|
||||
if (requestOptions && requestOptions.auth) {
|
||||
if (typeof requestOptions.auth === 'function') {
|
||||
// Custom Auth Header
|
||||
@@ -26,7 +24,9 @@ export default function getAuthorizationHeader({ requestOptions } = {}) {
|
||||
// HTTP Basic Auth (user:password)
|
||||
headers.Authorization = `Basic ${btoa(requestOptions.auth)}`;
|
||||
}
|
||||
} else if (accessToken) {
|
||||
}
|
||||
// Auth for the user's default
|
||||
else if (accessToken) {
|
||||
headers.Authorization = `Bearer ${accessToken}`;
|
||||
}
|
||||
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
import * as dcmjs from 'dcmjs';
|
||||
import dcmjs from 'dcmjs';
|
||||
import queryString from 'query-string';
|
||||
import dicomParser from 'dicom-parser';
|
||||
import getPixelSpacingInformation from '../utils/metadataProvider/getPixelSpacingInformation';
|
||||
@@ -378,7 +378,7 @@ class MetadataProvider {
|
||||
}
|
||||
|
||||
metadata = {
|
||||
overlays
|
||||
overlays,
|
||||
};
|
||||
|
||||
break;
|
||||
@@ -400,6 +400,7 @@ class MetadataProvider {
|
||||
|
||||
case WADO_IMAGE_LOADER_TAGS.GENERAL_IMAGE_MODULE:
|
||||
metadata = {
|
||||
sopInstanceUid: instance.SOPInstanceUID,
|
||||
instanceNumber: instance.InstanceNumber,
|
||||
lossyImageCompression: instance.LossyImageCompression,
|
||||
lossyImageCompressionRatio: instance.LossyImageCompressionRatio,
|
||||
|
||||
@@ -1,10 +1,10 @@
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import cornerstoneWADOImageLoader from 'cornerstone-wado-image-loader';
|
||||
import {
|
||||
clearStudyLoadingProgress,
|
||||
setStudyLoadingProgress,
|
||||
} from '../redux/actions';
|
||||
import StackManager from '../utils/StackManager';
|
||||
import { getCornerstoneWADOImageLoader } from '../utils/cornerstoneWADOImageLoader';
|
||||
|
||||
class BaseLoadingListener {
|
||||
constructor(stack, options = {}) {
|
||||
@@ -103,8 +103,7 @@ class DICOMFileLoadingListener extends BaseLoadingListener {
|
||||
this._checkCachedData();
|
||||
}
|
||||
|
||||
async _checkCachedData() {
|
||||
const cornerstoneWADOImageLoader = await getCornerstoneWADOImageLoader();
|
||||
_checkCachedData() {
|
||||
const dataSet = cornerstoneWADOImageLoader.wadouri.dataSetCacheManager.get(
|
||||
this._dataSetUrl
|
||||
);
|
||||
|
||||
@@ -11,6 +11,7 @@ import { api } from 'dicomweb-client';
|
||||
import { isImage } from '../../utils/isImage';
|
||||
import isDisplaySetReconstructable from '../../utils/isDisplaySetReconstructable';
|
||||
import isLowPriorityModality from '../../utils/isLowPriorityModality';
|
||||
import errorHandler from '../../errorHandler';
|
||||
|
||||
export class StudyMetadata extends Metadata {
|
||||
constructor(data, uid) {
|
||||
@@ -102,10 +103,7 @@ export class StudyMetadata extends Metadata {
|
||||
* @param {SeriesMetadata} series The series metadata object from which the display sets will be created
|
||||
* @returns {Array} The list of display sets created for the given series object
|
||||
*/
|
||||
_createDisplaySetsForSeries(
|
||||
sopClassHandlerModules,
|
||||
series,
|
||||
) {
|
||||
_createDisplaySetsForSeries(sopClassHandlerModules, series) {
|
||||
const study = this;
|
||||
const displaySets = [];
|
||||
|
||||
@@ -137,6 +135,7 @@ export class StudyMetadata extends Metadata {
|
||||
study,
|
||||
sopClassUIDs
|
||||
);
|
||||
|
||||
if (displaySet) {
|
||||
displaySet.sopClassModule = true;
|
||||
|
||||
@@ -217,6 +216,14 @@ export class StudyMetadata extends Metadata {
|
||||
// TODO -> Get x Modality by referencedSeriesInstanceUid, FoR, etc.
|
||||
}
|
||||
|
||||
/**
|
||||
* Adds the displaySets to the studies list of derived displaySets.
|
||||
* @param {array} displaySets The displaySets array to append to the derived displaysets list.
|
||||
*/
|
||||
_addDerivedDisplaySets(displaySets) {
|
||||
displaySets.map(displaySet => this._derivedDisplaySets.push(displaySet));
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns a list of derived datasets in the study, filtered by the given filter.
|
||||
* @param {object} filter An object containing search filters
|
||||
@@ -265,7 +272,7 @@ export class StudyMetadata extends Metadata {
|
||||
filteredDerivedDisplaySets = filteredDerivedDisplaySets.filter(
|
||||
displaySet =>
|
||||
displaySet.ReferencedFrameOfReferenceUID ===
|
||||
ReferencedFrameOfReferenceUID
|
||||
referencedFrameOfReferenceUID
|
||||
);
|
||||
}
|
||||
|
||||
@@ -293,14 +300,13 @@ export class StudyMetadata extends Metadata {
|
||||
}
|
||||
|
||||
// Loop through the series (SeriesMetadata)
|
||||
this.forEachSeries(
|
||||
series => {
|
||||
const displaySetsForSeries = this._createDisplaySetsForSeries(
|
||||
sopClassHandlerModules,
|
||||
series,
|
||||
);
|
||||
this.forEachSeries(series => {
|
||||
const displaySetsForSeries = this._createDisplaySetsForSeries(
|
||||
sopClassHandlerModules,
|
||||
series
|
||||
);
|
||||
|
||||
displaySets.push(...displaySetsForSeries);
|
||||
displaySets.push(...displaySetsForSeries);
|
||||
});
|
||||
|
||||
return sortDisplaySetList(displaySets);
|
||||
@@ -321,7 +327,10 @@ export class StudyMetadata extends Metadata {
|
||||
return false;
|
||||
}
|
||||
|
||||
const displaySets = this._createDisplaySetsForSeries(sopClassHandlerModules, series)
|
||||
const displaySets = this._createDisplaySetsForSeries(
|
||||
sopClassHandlerModules,
|
||||
series
|
||||
);
|
||||
|
||||
// Note: filtering in place because this._displaySets has writable: false
|
||||
for (let i = this._displaySets.length - 1; i >= 0; i--) {
|
||||
@@ -835,9 +844,11 @@ function _getDisplaySetFromSopClassModule(
|
||||
|
||||
const plugin = handlersForSopClassUID[0];
|
||||
const headers = DICOMWeb.getAuthorizationHeader();
|
||||
const errorInterceptor = errorHandler.getHTTPErrorHandler();
|
||||
const dicomWebClient = new dwc({
|
||||
url: study.getData().wadoRoot,
|
||||
headers,
|
||||
errorInterceptor,
|
||||
});
|
||||
|
||||
let displaySet = plugin.getDisplaySetFromSeries(
|
||||
|
||||
@@ -0,0 +1,6 @@
|
||||
// These should be overridden by the implementation
|
||||
const errorHandler = {
|
||||
getHTTPErrorHandler: () => null,
|
||||
};
|
||||
|
||||
export default errorHandler;
|
||||
@@ -2,7 +2,7 @@ import MODULE_TYPES from './MODULE_TYPES.js';
|
||||
import log from './../log.js';
|
||||
|
||||
export default class ExtensionManager {
|
||||
constructor({ commandsManager, servicesManager, appConfig = {} }) {
|
||||
constructor({ commandsManager, servicesManager, api, appConfig = {} }) {
|
||||
this.modules = {};
|
||||
this.registeredExtensionIds = [];
|
||||
this.moduleTypeNames = Object.values(MODULE_TYPES);
|
||||
@@ -10,6 +10,7 @@ export default class ExtensionManager {
|
||||
this._commandsManager = commandsManager;
|
||||
this._servicesManager = servicesManager;
|
||||
this._appConfig = appConfig;
|
||||
this._api = api;
|
||||
|
||||
this.moduleTypeNames.forEach(moduleType => {
|
||||
this.modules[moduleType] = [];
|
||||
@@ -119,6 +120,7 @@ export default class ExtensionManager {
|
||||
commandsManager: this._commandsManager,
|
||||
appConfig: this._appConfig,
|
||||
configuration,
|
||||
api: this._api
|
||||
});
|
||||
|
||||
if (!extensionModule) {
|
||||
|
||||
@@ -18,6 +18,7 @@ import string from './string.js';
|
||||
import studies from './studies/';
|
||||
import ui from './ui';
|
||||
import user from './user.js';
|
||||
import errorHandler from './errorHandler.js';
|
||||
import utils, { hotkeys } from './utils/';
|
||||
|
||||
import {
|
||||
@@ -46,6 +47,7 @@ const OHIF = {
|
||||
string,
|
||||
ui,
|
||||
user,
|
||||
errorHandler,
|
||||
object,
|
||||
log,
|
||||
DICOMWeb,
|
||||
@@ -79,6 +81,7 @@ export {
|
||||
string,
|
||||
ui,
|
||||
user,
|
||||
errorHandler,
|
||||
object,
|
||||
log,
|
||||
DICOMWeb,
|
||||
|
||||
@@ -24,6 +24,7 @@ describe('Top level exports', () => {
|
||||
'header',
|
||||
'cornerstone',
|
||||
'default', //
|
||||
'errorHandler',
|
||||
'string',
|
||||
'ui',
|
||||
'user',
|
||||
|
||||
@@ -251,7 +251,9 @@ export default class MeasurementApi {
|
||||
this.syncMeasurementsAndToolData();
|
||||
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
if (enabledElement.image) {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
}
|
||||
});
|
||||
|
||||
// Let others know that the measurements are updated
|
||||
|
||||
@@ -0,0 +1,9 @@
|
||||
import cornerstone from 'cornerstone-core';
|
||||
|
||||
export default function refreshCornerstoneViewports() {
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
if (enabledElement.image) {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
}
|
||||
});
|
||||
}
|
||||
@@ -4,6 +4,7 @@ import log from '../../log';
|
||||
import user from '../../user';
|
||||
import getImageAttributes from '../lib/getImageAttributes';
|
||||
import getLabel from '../lib/getLabel';
|
||||
import refreshCornerstoneViewports from '../lib/refreshCornerstoneViewports';
|
||||
|
||||
export default function({ eventData, tool, toolGroupId, toolGroup }) {
|
||||
const measurementApi = MeasurementApi.Instance;
|
||||
@@ -86,9 +87,7 @@ export default function({ eventData, tool, toolGroupId, toolGroup }) {
|
||||
}
|
||||
|
||||
// TODO: This is very hacky, but will work for now
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
});
|
||||
refreshCornerstoneViewports();
|
||||
|
||||
// TODO: Notify about the last activated measurement
|
||||
|
||||
|
||||
@@ -1,6 +1,7 @@
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import { MeasurementApi } from '../classes';
|
||||
import log from '../../log';
|
||||
import refreshCornerstoneViewports from '../lib/refreshCornerstoneViewports';
|
||||
|
||||
export default function({ eventData, tool, toolGroupId, toolGroup }) {
|
||||
log.info('CornerstoneToolsMeasurementRemoved');
|
||||
@@ -37,9 +38,7 @@ export default function({ eventData, tool, toolGroupId, toolGroup }) {
|
||||
}
|
||||
|
||||
// TODO: This is very hacky, but will work for now
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
});
|
||||
refreshCornerstoneViewports();
|
||||
|
||||
if (MeasurementApi.isToolIncluded(tool)) {
|
||||
// TODO: Notify that viewer suffered changes
|
||||
|
||||
@@ -4,6 +4,7 @@ import log from '../../log';
|
||||
import user from '../../user';
|
||||
import getImageAttributes from '../lib/getImageAttributes';
|
||||
import getLabel from '../lib/getLabel';
|
||||
import refreshCornerstoneViewports from '../lib/refreshCornerstoneViewports';
|
||||
|
||||
export default function handleSingleMeasurementAdded({ eventData, tool }) {
|
||||
const measurementApi = MeasurementApi.Instance;
|
||||
@@ -39,9 +40,7 @@ export default function handleSingleMeasurementAdded({ eventData, tool }) {
|
||||
}
|
||||
|
||||
// TODO: This is very hacky, but will work for now
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
});
|
||||
refreshCornerstoneViewports();
|
||||
|
||||
// TODO: Notify about the last activated measurement
|
||||
|
||||
|
||||
+2
-3
@@ -1,6 +1,7 @@
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import { MeasurementApi } from '../classes';
|
||||
import log from '../../log';
|
||||
import refreshCornerstoneViewports from '../lib/refreshCornerstoneViewports';
|
||||
|
||||
export default function handleSingleMeasurementRemoved({
|
||||
eventData,
|
||||
@@ -35,9 +36,7 @@ export default function handleSingleMeasurementRemoved({
|
||||
});
|
||||
|
||||
// TODO: This is very hacky, but will work for now
|
||||
cornerstone.getEnabledElements().forEach(enabledElement => {
|
||||
cornerstone.updateImage(enabledElement.element);
|
||||
});
|
||||
refreshCornerstoneViewports();
|
||||
|
||||
if (MeasurementApi.isToolIncluded(tool)) {
|
||||
// TODO: Notify that viewer suffered changes
|
||||
|
||||
@@ -6,11 +6,12 @@ const defaultState = {
|
||||
|
||||
const servers = (state = defaultState, action) => {
|
||||
switch (action.type) {
|
||||
case 'SET_STUDY_DATA':
|
||||
const updatedStudyData = cloneDeep(state).studyData;
|
||||
updatedStudyData[action.StudyInstanceUID] = action.data;
|
||||
case 'SET_STUDY_DATA': {
|
||||
const updatedStudyData = cloneDeep(state.studyData);
|
||||
updatedStudyData[action.StudyInstanceUID] = cloneDeep(action.data);
|
||||
|
||||
return Object.assign({}, state, { studyData: updatedStudyData });
|
||||
}
|
||||
default:
|
||||
return state;
|
||||
}
|
||||
|
||||
@@ -1,6 +1,8 @@
|
||||
import DICOMWeb from '../../../DICOMWeb/';
|
||||
import { api } from 'dicomweb-client';
|
||||
|
||||
import errorHandler from '../../../errorHandler';
|
||||
|
||||
/**
|
||||
* Parses data returned from a QIDO search and transforms it into
|
||||
* an array of series that are present in the study
|
||||
@@ -79,6 +81,7 @@ export default function Instances(server, StudyInstanceUID) {
|
||||
const config = {
|
||||
url: server.qidoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
};
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
const queryParams = getQIDOQueryParams(
|
||||
|
||||
@@ -1,6 +1,8 @@
|
||||
import { api } from 'dicomweb-client';
|
||||
import DICOMWeb from '../../../DICOMWeb/';
|
||||
|
||||
import errorHandler from '../../../errorHandler';
|
||||
|
||||
/**
|
||||
* Creates a QIDO date string for a date range query
|
||||
* Assumes the year is positive, at most 4 digits long.
|
||||
@@ -115,6 +117,7 @@ export default function Studies(server, filter) {
|
||||
const config = {
|
||||
url: server.qidoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
};
|
||||
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
|
||||
@@ -9,6 +9,8 @@ import {
|
||||
addInstancesToStudy,
|
||||
} from './studyInstanceHelpers';
|
||||
|
||||
import errorHandler from '../../../errorHandler';
|
||||
|
||||
const { naturalizeDataset } = dcmjs.data.DicomMetaDictionary;
|
||||
|
||||
/**
|
||||
@@ -73,6 +75,7 @@ export default class RetrieveMetadataLoaderAsync extends RetrieveMetadataLoader
|
||||
const client = new api.DICOMwebClient({
|
||||
url: server.qidoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
});
|
||||
|
||||
this.client = client;
|
||||
@@ -117,7 +120,7 @@ export default class RetrieveMetadataLoaderAsync extends RetrieveMetadataLoader
|
||||
|
||||
return {
|
||||
seriesInstanceUIDsMap,
|
||||
seriesData
|
||||
seriesData,
|
||||
};
|
||||
}
|
||||
|
||||
@@ -155,11 +158,14 @@ export default class RetrieveMetadataLoaderAsync extends RetrieveMetadataLoader
|
||||
SeriesDescription: series.SeriesDescription,
|
||||
SeriesNumber: series.SeriesNumber,
|
||||
Modality: series.Modality,
|
||||
instances: []
|
||||
instances: [],
|
||||
};
|
||||
|
||||
if (study.series[idx]) {
|
||||
study.series[idx] = Object.assign(seriesDataFromQIDO, study.series[idx]);
|
||||
study.series[idx] = Object.assign(
|
||||
seriesDataFromQIDO,
|
||||
study.series[idx]
|
||||
);
|
||||
} else {
|
||||
study.series[idx] = seriesDataFromQIDO;
|
||||
}
|
||||
|
||||
@@ -3,6 +3,8 @@ import DICOMWeb from '../../../DICOMWeb/';
|
||||
import { createStudyFromSOPInstanceList } from './studyInstanceHelpers';
|
||||
import RetrieveMetadataLoader from './retrieveMetadataLoader';
|
||||
|
||||
import errorHandler from '../../../errorHandler';
|
||||
|
||||
/**
|
||||
* Class for sync load of study metadata.
|
||||
* It inherits from RetrieveMetadataLoader
|
||||
@@ -58,6 +60,7 @@ export default class RetrieveMetadataLoaderSync extends RetrieveMetadataLoader {
|
||||
const client = new api.DICOMwebClient({
|
||||
url: server.wadoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
});
|
||||
|
||||
this.client = client;
|
||||
|
||||
@@ -1,8 +1,8 @@
|
||||
import DICOMWeb from '../../../DICOMWeb';
|
||||
import metadataProvider from '../../../classes/MetadataProvider';
|
||||
import getWADORSImageId from '../../../utils/getWADORSImageId';
|
||||
import cornerstoneWADOImageLoader from 'cornerstone-wado-image-loader';
|
||||
import getReferencedSeriesSequence from './getReferencedSeriesSequence';
|
||||
import { getCornerstoneWADOImageLoader } from '../../../utils/cornerstoneWADOImageLoader';
|
||||
|
||||
/**
|
||||
* Create a plain JS object that describes a study (a study descriptor object)
|
||||
@@ -144,7 +144,7 @@ async function makeSOPInstance(server, study, instance) {
|
||||
wadorsuri,
|
||||
wadoRoot: server.wadoRoot,
|
||||
imageRendering: server.imageRendering,
|
||||
thumbnailRendering: server.thumbnailRendering
|
||||
thumbnailRendering: server.thumbnailRendering,
|
||||
};
|
||||
|
||||
series.instances.push(sopInstance);
|
||||
@@ -160,9 +160,10 @@ async function makeSOPInstance(server, study, instance) {
|
||||
|
||||
const wadoRSMetadata = Object.assign(instance);
|
||||
|
||||
const cornerstoneWADOImageLoader = await getCornerstoneWADOImageLoader();
|
||||
if (sopInstance.NumberOfFrames) {
|
||||
for (let i = 0; i < sopInstance.NumberOfFrames; i++) {
|
||||
const { NumberOfFrames } = sopInstance.metadata;
|
||||
|
||||
if (NumberOfFrames) {
|
||||
for (let i = 0; i < NumberOfFrames; i++) {
|
||||
const wadorsImageId = getWADORSImageId(sopInstance, i);
|
||||
|
||||
cornerstoneWADOImageLoader.wadors.metaDataManager.add(
|
||||
@@ -191,7 +192,7 @@ async function makeSOPInstance(server, study, instance) {
|
||||
*/
|
||||
async function addInstancesToStudy(server, study, sopInstanceList) {
|
||||
return Promise.all(
|
||||
sopInstanceList.map(function (sopInstance) {
|
||||
sopInstanceList.map(function(sopInstance) {
|
||||
return makeSOPInstance(server, study, sopInstance);
|
||||
})
|
||||
);
|
||||
|
||||
@@ -0,0 +1,66 @@
|
||||
|
||||
export default class Queue {
|
||||
|
||||
constructor(limit) {
|
||||
this.limit = limit;
|
||||
this.size = 0;
|
||||
this.awaiting = null;
|
||||
}
|
||||
|
||||
/**
|
||||
* Creates a new "proxy" function associated with the current execution queue
|
||||
* instance. When the returned function is invoked, the queue limit is checked
|
||||
* to make sure the limit of scheduled tasks is repected (throwing an
|
||||
* exception when the limit has been reached and before calling the original
|
||||
* function). The original function is only invoked after all the previously
|
||||
* scheduled tasks have finished executing (their returned promises have
|
||||
* resolved/rejected);
|
||||
*
|
||||
* @param {function} task The function whose execution will be associated
|
||||
* with the current Queue instance;
|
||||
* @returns {function} The "proxy" function bound to the current Queue
|
||||
* instance;
|
||||
*/
|
||||
bind(task) {
|
||||
return bind(this, task);
|
||||
}
|
||||
|
||||
bindSafe(task, onError) {
|
||||
const boundTask = bind(this, task);
|
||||
return async function safeTask(...args) {
|
||||
try {
|
||||
return await boundTask(...args);
|
||||
} catch (e) {
|
||||
onError(e);
|
||||
}
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Utils
|
||||
*/
|
||||
|
||||
function bind(queue, task) {
|
||||
const cleaner = clean.bind(null, queue);
|
||||
return async function boundTask(...args) {
|
||||
if (queue.size >= queue.limit) {
|
||||
throw new Error('Queue limit reached');
|
||||
}
|
||||
const promise = chain(queue.awaiting, task, args);
|
||||
queue.awaiting = promise.then(cleaner, cleaner);
|
||||
queue.size++;
|
||||
return promise;
|
||||
};
|
||||
}
|
||||
|
||||
function clean(queue) {
|
||||
if (queue.size > 0 && --queue.size === 0) {
|
||||
queue.awaiting = null;
|
||||
}
|
||||
}
|
||||
|
||||
async function chain(prev, task, args) {
|
||||
await prev;
|
||||
return task(...args);
|
||||
}
|
||||
@@ -0,0 +1,66 @@
|
||||
import makeDeferred from './makeDeferred';
|
||||
import Queue from './Queue';
|
||||
|
||||
/**
|
||||
* Utils
|
||||
*/
|
||||
|
||||
function timeout(delay) {
|
||||
const { resolve, promise } = makeDeferred();
|
||||
setTimeout(() => void resolve(Date.now()), delay);
|
||||
return promise;
|
||||
}
|
||||
|
||||
/**
|
||||
* Tests
|
||||
*/
|
||||
|
||||
describe('Queue', () => {
|
||||
it('should bind functions to the queue', async () => {
|
||||
const queue = new Queue(2);
|
||||
const mockedTimeout = jest.fn(timeout);
|
||||
const timer = queue.bind(mockedTimeout);
|
||||
const start = Date.now();
|
||||
timer(120).then(now => {
|
||||
const elapsed = now - start;
|
||||
expect(elapsed >= 120 && elapsed < 240).toBe(true);
|
||||
});
|
||||
const end = await timer(120);
|
||||
expect(end - start > 240).toBe(true);
|
||||
expect(mockedTimeout).toBeCalledTimes(2);
|
||||
});
|
||||
it('should prevent task execution when queue limit is reached', async () => {
|
||||
const queue = new Queue(1);
|
||||
const mockedTimeout = jest.fn(timeout);
|
||||
const timer = queue.bind(mockedTimeout);
|
||||
const start = Date.now();
|
||||
const promise = timer(120).then(time => time - start);
|
||||
try {
|
||||
await timer(120);
|
||||
} catch (e) {
|
||||
expect(Date.now() - start < 120).toBe(true);
|
||||
expect(e.message).toBe('Queue limit reached');
|
||||
}
|
||||
const elapsed = await promise;
|
||||
expect(elapsed >= 120 && elapsed < 240).toBe(true);
|
||||
expect(mockedTimeout).toBeCalledTimes(1);
|
||||
});
|
||||
it('should safely bind tasks to the queue', async () => {
|
||||
const queue = new Queue(1);
|
||||
const mockedErrorHandler = jest.fn();
|
||||
const mockedTimeout = jest.fn(timeout);
|
||||
const timer = queue.bindSafe(mockedTimeout, mockedErrorHandler);
|
||||
const start = Date.now();
|
||||
const promise = timer(120).then(time => time - start);
|
||||
await timer(120);
|
||||
expect(Date.now() - start < 120).toBe(true);
|
||||
expect(mockedErrorHandler).toBeCalledTimes(1);
|
||||
expect(mockedErrorHandler).nthCalledWith(
|
||||
1,
|
||||
expect.objectContaining({ message: 'Queue limit reached' })
|
||||
);
|
||||
const elapsed = await promise;
|
||||
expect(elapsed >= 120 && elapsed < 240).toBe(true);
|
||||
expect(mockedTimeout).toBeCalledTimes(1);
|
||||
});
|
||||
});
|
||||
@@ -1,5 +0,0 @@
|
||||
export function getCornerstoneWADOImageLoader() {
|
||||
return import(
|
||||
/* webpackChunkName: "CornerstoneWADOImageLoader" */ 'cornerstone-wado-image-loader'
|
||||
);
|
||||
}
|
||||
@@ -1,7 +1,9 @@
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import cornerstoneWADOImageLoader from 'cornerstone-wado-image-loader';
|
||||
import { api } from 'dicomweb-client';
|
||||
import DICOMWeb from '../DICOMWeb';
|
||||
import { getCornerstoneWADOImageLoader } from './cornerstoneWADOImageLoader';
|
||||
|
||||
import errorHandler from '../errorHandler';
|
||||
|
||||
const getImageId = imageObj => {
|
||||
if (!imageObj) {
|
||||
@@ -57,11 +59,13 @@ const wadorsRetriever = (
|
||||
studyInstanceUID,
|
||||
seriesInstanceUID,
|
||||
sopInstanceUID,
|
||||
headers = DICOMWeb.getAuthorizationHeader()
|
||||
headers = DICOMWeb.getAuthorizationHeader(),
|
||||
errorInterceptor = errorHandler.getHTTPErrorHandler()
|
||||
) => {
|
||||
const config = {
|
||||
url,
|
||||
headers,
|
||||
errorInterceptor,
|
||||
};
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
|
||||
@@ -86,7 +90,7 @@ const getImageLoaderType = imageId => {
|
||||
};
|
||||
|
||||
class DicomLoaderService {
|
||||
async getLocalData(dataset, studies) {
|
||||
getLocalData(dataset, studies) {
|
||||
if (dataset && dataset.localFile) {
|
||||
// Use referenced imageInstance
|
||||
const imageInstance = getImageInstance(dataset);
|
||||
@@ -98,7 +102,6 @@ class DicomLoaderService {
|
||||
}
|
||||
|
||||
if (!someInvalidStrings(imageId)) {
|
||||
const cornerstoneWADOImageLoader = await getCornerstoneWADOImageLoader();
|
||||
return cornerstoneWADOImageLoader.wadouri.loadFileRequest(imageId);
|
||||
}
|
||||
}
|
||||
@@ -177,16 +180,16 @@ class DicomLoaderService {
|
||||
}
|
||||
}
|
||||
|
||||
async *getLoaderIterator(dataset, studies) {
|
||||
yield await this.getLocalData(dataset, studies);
|
||||
*getLoaderIterator(dataset, studies) {
|
||||
yield this.getLocalData(dataset, studies);
|
||||
yield this.getDataByImageType(dataset);
|
||||
yield this.getDataByDatasetType(dataset);
|
||||
}
|
||||
|
||||
async findDicomDataPromise(dataset, studies) {
|
||||
findDicomDataPromise(dataset, studies) {
|
||||
const loaderIterator = this.getLoaderIterator(dataset, studies);
|
||||
// it returns first valid retriever method.
|
||||
for await (const loader of loaderIterator) {
|
||||
for (const loader of loaderIterator) {
|
||||
if (loader) {
|
||||
return loader;
|
||||
}
|
||||
|
||||
@@ -0,0 +1,193 @@
|
||||
/**
|
||||
* Constants
|
||||
*/
|
||||
|
||||
const SEPARATOR = '/';
|
||||
|
||||
/**
|
||||
* API
|
||||
*/
|
||||
|
||||
/**
|
||||
* Add values to a list hierarchically.
|
||||
* @ For example:
|
||||
* addToList([], 'a', 'b', 'c');
|
||||
* will add the following hierarchy to the list:
|
||||
* a > b > c
|
||||
* resulting in the following array:
|
||||
* [['a', [['b', ['c']]]]]
|
||||
* @param {Array} list The target list;
|
||||
* @param {...string} values The values to be hierarchically added to the list;
|
||||
* @returns {Array} Returns the provided list possibly updated with the given
|
||||
* values or null when a bad list (not an actual array) is provided
|
||||
*/
|
||||
function addToList(list, ...values) {
|
||||
if (Array.isArray(list)) {
|
||||
if (values.length > 0) {
|
||||
addValuesToList(list, values);
|
||||
}
|
||||
return list;
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
/**
|
||||
* Iterates through the provided hierarchical list executing the callback
|
||||
* once for each leaf-node of the tree. The ancestors of the leaf-node being
|
||||
* visited are passed to the callback function along with the leaf-node in
|
||||
* the exact same order they appear on the tree (from root to leaf);
|
||||
* @ For example, if the hierachy `a > b > c` appears on the tree ("a" being
|
||||
* the root and "c" being the leaf) the callback function will be called as:
|
||||
* callback('a', 'b', 'c');
|
||||
* @param {Array} list The hierarchical list to be iterated
|
||||
* @param {function} callback The callback which will be exected once for
|
||||
* each leaf-node of the hierarchical list;
|
||||
* @returns {Array} Returns the provided list or null for bad arguments;
|
||||
*/
|
||||
function forEach(list, callback) {
|
||||
if (Array.isArray(list)) {
|
||||
if (typeof callback === 'function') {
|
||||
forEachValue(list, callback);
|
||||
}
|
||||
return list;
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
/**
|
||||
* Retrieves an item from the given hierarchical list based on an index (number)
|
||||
* or a path (string).
|
||||
* @ For example:
|
||||
* getItem(list, '1/0/4')
|
||||
* will retrieve the fourth grandchild, from the first child of the second
|
||||
* element of the list;
|
||||
* @param {Array} list The source list;
|
||||
* @param {string|number} indexOrPath The index of the element inside list
|
||||
* (number) or the path to reach the desired element (string). The slash "/"
|
||||
* character is cosidered the path separator;
|
||||
*/
|
||||
function getItem(list, indexOrPath) {
|
||||
if (Array.isArray(list)) {
|
||||
let subpath = null;
|
||||
let index = typeof indexOrPath === 'number' ? indexOrPath : -1;
|
||||
if (typeof indexOrPath === 'string') {
|
||||
const separator = indexOrPath.indexOf(SEPARATOR);
|
||||
if (separator > 0) {
|
||||
index = parseInt(indexOrPath.slice(0, separator), 10);
|
||||
if (separator + 1 < indexOrPath.length) {
|
||||
subpath = indexOrPath.slice(separator + 1, indexOrPath.length);
|
||||
}
|
||||
} else {
|
||||
index = parseInt(indexOrPath, 10);
|
||||
}
|
||||
}
|
||||
if (index >= 0 && index < list.length) {
|
||||
const item = list[index];
|
||||
if (isSublist(item)) {
|
||||
if (subpath !== null) {
|
||||
return getItem(item[1], subpath);
|
||||
}
|
||||
return item[0];
|
||||
}
|
||||
return item;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Pretty-print the provided hierarchical list;
|
||||
* @param {Array} list The source list;
|
||||
* @returns {string} The textual representation of the hierarchical list;
|
||||
*/
|
||||
function print(list) {
|
||||
let text = '';
|
||||
if (Array.isArray(list)) {
|
||||
let prev = [];
|
||||
forEachValue(list, function(...args) {
|
||||
let prevLen = prev.length;
|
||||
for (let i = 0, l = args.length; i < l; ++i) {
|
||||
if (i < prevLen && args[i] === prev[i]) {
|
||||
continue;
|
||||
}
|
||||
text += ' '.repeat(i) + args[i] + '\n';
|
||||
}
|
||||
prev = args;
|
||||
});
|
||||
}
|
||||
return text;
|
||||
}
|
||||
|
||||
/**
|
||||
* Utils
|
||||
*/
|
||||
|
||||
function forEachValue(list, callback) {
|
||||
for (let i = 0, l = list.length; i < l; ++i) {
|
||||
let item = list[i];
|
||||
if (isSublist(item)) {
|
||||
if (item[1].length > 0) {
|
||||
forEachValue(item[1], callback.bind(null, item[0]));
|
||||
continue;
|
||||
}
|
||||
item = item[0];
|
||||
}
|
||||
callback(item);
|
||||
}
|
||||
}
|
||||
|
||||
function addValuesToList(list, values) {
|
||||
let value = values.shift();
|
||||
let index = add(list, value);
|
||||
if (index >= 0) {
|
||||
if (values.length > 0) {
|
||||
let sublist = list[index];
|
||||
if (!isSublist(sublist)) {
|
||||
sublist = toSublist(value);
|
||||
list[index] = sublist;
|
||||
}
|
||||
return addValuesToList(sublist[1], values);
|
||||
}
|
||||
return true;
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
function add(list, value) {
|
||||
let index = find(list, value);
|
||||
if (index === -2) {
|
||||
index = list.push(value) - 1;
|
||||
}
|
||||
return index;
|
||||
}
|
||||
|
||||
function find(list, value) {
|
||||
if (typeof value === 'string') {
|
||||
for (let i = 0, l = list.length; i < l; ++i) {
|
||||
let item = list[i];
|
||||
if (item === value || (isSublist(item) && item[0] === value)) {
|
||||
return i;
|
||||
}
|
||||
}
|
||||
return -2;
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
|
||||
function isSublist(subject) {
|
||||
return (
|
||||
Array.isArray(subject) &&
|
||||
subject.length === 2 &&
|
||||
typeof subject[0] === 'string' &&
|
||||
Array.isArray(subject[1])
|
||||
);
|
||||
}
|
||||
|
||||
function toSublist(value) {
|
||||
return [value + '', []];
|
||||
}
|
||||
|
||||
/**
|
||||
* Exports
|
||||
*/
|
||||
|
||||
export { addToList, getItem, forEach, print };
|
||||
@@ -0,0 +1,96 @@
|
||||
import { addToList, forEach, getItem, print } from './hierarchicalListUtils';
|
||||
|
||||
describe('hierarchicalListUtils', function() {
|
||||
let sharedList;
|
||||
|
||||
beforeEach(function() {
|
||||
sharedList = [
|
||||
['1.2.3.1', ['1.2.3.1.1', '1.2.3.1.2']],
|
||||
'1.2.3.2',
|
||||
['1.2.3.3', ['1.2.3.3.1', ['1.2.3.3.2', ['1.2.3.3.2.1', '1.2.3.3.2.2']]]],
|
||||
];
|
||||
});
|
||||
|
||||
describe('getItem', function() {
|
||||
it('should retrieve elements from a list by index', function() {
|
||||
expect(getItem(sharedList, 0)).toBe('1.2.3.1');
|
||||
expect(getItem(sharedList, 1)).toBe('1.2.3.2');
|
||||
expect(getItem(sharedList, 2)).toBe('1.2.3.3');
|
||||
expect(getItem(sharedList, 3)).toBeUndefined();
|
||||
});
|
||||
it('should retrieve elements from a list by path', function() {
|
||||
expect(getItem(sharedList, '0')).toBe('1.2.3.1');
|
||||
expect(getItem(sharedList, '0/0')).toBe('1.2.3.1.1');
|
||||
expect(getItem(sharedList, '0/1')).toBe('1.2.3.1.2');
|
||||
expect(getItem(sharedList, '0/2')).toBeUndefined();
|
||||
expect(getItem(sharedList, '1')).toBe('1.2.3.2');
|
||||
expect(getItem(sharedList, '2')).toBe('1.2.3.3');
|
||||
expect(getItem(sharedList, '2/0')).toBe('1.2.3.3.1');
|
||||
expect(getItem(sharedList, '2/1')).toBe('1.2.3.3.2');
|
||||
expect(getItem(sharedList, '2/2')).toBeUndefined();
|
||||
expect(getItem(sharedList, '2/1/0')).toBe('1.2.3.3.2.1');
|
||||
expect(getItem(sharedList, '2/1/1')).toBe('1.2.3.3.2.2');
|
||||
expect(getItem(sharedList, '2/1/2')).toBeUndefined();
|
||||
expect(getItem(sharedList, '3')).toBeUndefined();
|
||||
});
|
||||
});
|
||||
|
||||
describe('addToList', function() {
|
||||
it('should support adding elements to a list hierarchically', function() {
|
||||
const list = [];
|
||||
addToList(list, '1.2.3.1', '1.2.3.1.1');
|
||||
addToList(list, '1.2.3.1', '1.2.3.1.2');
|
||||
addToList(list, '1.2.3.2');
|
||||
addToList(list, '1.2.3.3', '1.2.3.3.1');
|
||||
addToList(list, '1.2.3.3', '1.2.3.3.2', '1.2.3.3.2.1');
|
||||
addToList(list, '1.2.3.3', '1.2.3.3.2', '1.2.3.3.2.2');
|
||||
expect(list).toStrictEqual(sharedList);
|
||||
});
|
||||
it('should change leaf nodes into non-leaf nodes', function() {
|
||||
const listw = [];
|
||||
const listx = [['x.1', ['x.1.1', 'x.1.2']], 'x.2'];
|
||||
const listy = [
|
||||
['x.1', [['x.1.1', ['x.1.1.1']], 'x.1.2']],
|
||||
['x.2', ['x.2.1']],
|
||||
];
|
||||
addToList(listw, 'x.1');
|
||||
addToList(listw, 'x.1', 'x.1.1');
|
||||
addToList(listw, 'x.1', 'x.1.2');
|
||||
addToList(listw, 'x.2');
|
||||
expect(listw).toStrictEqual(listx);
|
||||
addToList(listw, 'x.2', 'x.2.1');
|
||||
addToList(listw, 'x.1', 'x.1.1', 'x.1.1.1');
|
||||
expect(listw).toStrictEqual(listy);
|
||||
});
|
||||
});
|
||||
|
||||
describe('forEach', function() {
|
||||
it('should iterate through all leaf nodes of the tree', function() {
|
||||
const fn = jest.fn();
|
||||
forEach(sharedList, fn);
|
||||
expect(fn).toHaveBeenCalledTimes(6);
|
||||
expect(fn).nthCalledWith(1, '1.2.3.1', '1.2.3.1.1');
|
||||
expect(fn).nthCalledWith(2, '1.2.3.1', '1.2.3.1.2');
|
||||
expect(fn).nthCalledWith(3, '1.2.3.2');
|
||||
expect(fn).nthCalledWith(4, '1.2.3.3', '1.2.3.3.1');
|
||||
expect(fn).nthCalledWith(5, '1.2.3.3', '1.2.3.3.2', '1.2.3.3.2.1');
|
||||
expect(fn).nthCalledWith(6, '1.2.3.3', '1.2.3.3.2', '1.2.3.3.2.2');
|
||||
});
|
||||
});
|
||||
|
||||
describe('print', function() {
|
||||
it('should pretty-print the hierarchical list', function() {
|
||||
expect(print(sharedList)).toBe(
|
||||
'1.2.3.1\n' +
|
||||
' 1.2.3.1.1\n' +
|
||||
' 1.2.3.1.2\n' +
|
||||
'1.2.3.2\n' +
|
||||
'1.2.3.3\n' +
|
||||
' 1.2.3.3.1\n' +
|
||||
' 1.2.3.3.2\n' +
|
||||
' 1.2.3.3.2.1\n' +
|
||||
' 1.2.3.3.2.2\n'
|
||||
);
|
||||
});
|
||||
});
|
||||
});
|
||||
@@ -10,8 +10,14 @@ import DicomLoaderService from './dicomLoaderService.js';
|
||||
import b64toBlob from './b64toBlob.js';
|
||||
import loadAndCacheDerivedDisplaySets from './loadAndCacheDerivedDisplaySets.js';
|
||||
import * as urlUtil from './urlUtil';
|
||||
import makeDeferred from './makeDeferred';
|
||||
import makeCancelable from './makeCancelable';
|
||||
import hotkeys from './hotkeys';
|
||||
import Queue from './Queue';
|
||||
import isDicomUid from './isDicomUid';
|
||||
import resolveObjectPath from './resolveObjectPath';
|
||||
import * as hierarchicalListUtils from './hierarchicalListUtils';
|
||||
import * as progressTrackingUtils from './progressTrackingUtils';
|
||||
|
||||
const utils = {
|
||||
guid,
|
||||
@@ -26,8 +32,14 @@ const utils = {
|
||||
DicomLoaderService,
|
||||
urlUtil,
|
||||
loadAndCacheDerivedDisplaySets,
|
||||
makeDeferred,
|
||||
makeCancelable,
|
||||
hotkeys,
|
||||
Queue,
|
||||
isDicomUid,
|
||||
resolveObjectPath,
|
||||
hierarchicalListUtils,
|
||||
progressTrackingUtils,
|
||||
};
|
||||
|
||||
export {
|
||||
@@ -43,8 +55,14 @@ export {
|
||||
DicomLoaderService,
|
||||
urlUtil,
|
||||
loadAndCacheDerivedDisplaySets,
|
||||
makeDeferred,
|
||||
makeCancelable,
|
||||
hotkeys,
|
||||
Queue,
|
||||
isDicomUid,
|
||||
resolveObjectPath,
|
||||
hierarchicalListUtils,
|
||||
progressTrackingUtils,
|
||||
};
|
||||
|
||||
export default utils;
|
||||
@@ -15,8 +15,14 @@ describe('Top level exports', () => {
|
||||
'loadAndCacheDerivedDisplaySets',
|
||||
'DicomLoaderService',
|
||||
'urlUtil',
|
||||
'makeDeferred',
|
||||
'makeCancelable',
|
||||
'hotkeys',
|
||||
'Queue',
|
||||
'isDicomUid',
|
||||
'resolveObjectPath',
|
||||
'hierarchicalListUtils',
|
||||
'progressTrackingUtils',
|
||||
].sort();
|
||||
|
||||
const exports = Object.keys(utils.default).sort();
|
||||
|
||||
@@ -0,0 +1,4 @@
|
||||
export default function isDicomUid(subject) {
|
||||
const regex = /^\d+(?:\.\d+)*$/;
|
||||
return typeof subject === 'string' && regex.test(subject.trim());
|
||||
}
|
||||
@@ -0,0 +1,16 @@
|
||||
import isDicomUid from './isDicomUid';
|
||||
|
||||
describe('isDicomUid', function() {
|
||||
it('should return true for valid DICOM UIDs', function() {
|
||||
expect(isDicomUid('1')).toBe(true);
|
||||
expect(isDicomUid('1.2')).toBe(true);
|
||||
expect(isDicomUid('1.2.3')).toBe(true);
|
||||
expect(isDicomUid('1.2.3.4')).toBe(true);
|
||||
});
|
||||
it('should return false for invalid DICOM UIDs', function() {
|
||||
expect(isDicomUid('x')).toBe(false);
|
||||
expect(isDicomUid('1.')).toBe(false);
|
||||
expect(isDicomUid('1. 2')).toBe(false);
|
||||
expect(isDicomUid('1.2.n.4')).toBe(false);
|
||||
});
|
||||
});
|
||||
@@ -50,10 +50,12 @@ import studyMetadataManager from './studyMetadataManager';
|
||||
const loadAndCacheDerivedDisplaySets = (referencedDisplaySet, studies) => {
|
||||
const { StudyInstanceUID, SeriesInstanceUID } = referencedDisplaySet;
|
||||
|
||||
const promises = [];
|
||||
|
||||
const studyMetadata = studyMetadataManager.get(StudyInstanceUID);
|
||||
|
||||
if (!studyMetadata) {
|
||||
return;
|
||||
return promises;
|
||||
}
|
||||
|
||||
const derivedDisplaySets = studyMetadata.getDerivedDatasets({
|
||||
@@ -61,7 +63,7 @@ const loadAndCacheDerivedDisplaySets = (referencedDisplaySet, studies) => {
|
||||
});
|
||||
|
||||
if (!derivedDisplaySets.length) {
|
||||
return;
|
||||
return promises;
|
||||
}
|
||||
|
||||
// Filter by type
|
||||
@@ -80,15 +82,20 @@ const loadAndCacheDerivedDisplaySets = (referencedDisplaySet, studies) => {
|
||||
// For each type, see if any are loaded, if not load the most recent.
|
||||
Object.keys(displaySetsPerModality).forEach(key => {
|
||||
const displaySets = displaySetsPerModality[key];
|
||||
|
||||
const isLoaded = displaySets.some(displaySet => displaySet.isLoaded);
|
||||
|
||||
if (isLoaded) {
|
||||
return;
|
||||
}
|
||||
|
||||
if (displaySets.some(displaySet => displaySet.loadError)) {
|
||||
return;
|
||||
}
|
||||
|
||||
// find most recent and load it.
|
||||
let recentDateTime = 0;
|
||||
let recentDisplaySet;
|
||||
let recentDisplaySet = displaySets[0];
|
||||
|
||||
displaySets.forEach(displaySet => {
|
||||
const dateTime = Number(
|
||||
@@ -100,8 +107,12 @@ const loadAndCacheDerivedDisplaySets = (referencedDisplaySet, studies) => {
|
||||
}
|
||||
});
|
||||
|
||||
recentDisplaySet.load(referencedDisplaySet, studies);
|
||||
recentDisplaySet.isLoading = true;
|
||||
|
||||
promises.push(recentDisplaySet.load(referencedDisplaySet, studies));
|
||||
});
|
||||
|
||||
return promises;
|
||||
};
|
||||
|
||||
export default loadAndCacheDerivedDisplaySets;
|
||||
@@ -0,0 +1,7 @@
|
||||
export default function makeDeferred() {
|
||||
let reject, resolve, promise = new Promise(function (res, rej) {
|
||||
resolve = res;
|
||||
reject = rej;
|
||||
});
|
||||
return Object.freeze({ promise, resolve, reject });
|
||||
}
|
||||
@@ -0,0 +1,14 @@
|
||||
import makeDeferred from './makeDeferred';
|
||||
|
||||
describe('makeDeferred', () => {
|
||||
it('should provide a promise to be resolved externally', () => {
|
||||
const deferred = makeDeferred();
|
||||
setTimeout(() => void deferred.resolve('Yay!'));
|
||||
return deferred.promise.then(result => void expect(result).toBe('Yay!'));
|
||||
});
|
||||
it('should provide a promise to be rejected externally', () => {
|
||||
const deferred = makeDeferred();
|
||||
setTimeout(() => void deferred.reject('Oops...'));
|
||||
return deferred.promise.catch(error => void expect(error).toBe('Oops...'));
|
||||
});
|
||||
});
|
||||
@@ -3,6 +3,8 @@ import DICOMWeb from '../../DICOMWeb';
|
||||
import str2ab from '../str2ab';
|
||||
import unpackOverlay from './unpackOverlay';
|
||||
|
||||
import errorHandler from '../../errorHandler';
|
||||
|
||||
export default async function fetchOverlayData(instance, server) {
|
||||
const OverlayDataPromises = [];
|
||||
const OverlayDataTags = [];
|
||||
@@ -21,14 +23,20 @@ export default async function fetchOverlayData(instance, server) {
|
||||
const inlineBinaryData = atob(instance[OverlayDataTag].InlineBinary);
|
||||
const arraybuffer = str2ab(inlineBinaryData);
|
||||
|
||||
instance[OverlayDataTag] = unpackOverlay(arraybuffer)
|
||||
} else if (instance[OverlayDataTag] && instance[OverlayDataTag].BulkDataURI) {
|
||||
instance[OverlayDataTag] = unpackOverlay(arraybuffer);
|
||||
} else if (
|
||||
instance[OverlayDataTag] &&
|
||||
instance[OverlayDataTag].BulkDataURI
|
||||
) {
|
||||
OverlayDataPromises.push(
|
||||
_getOverlayData(instance[OverlayDataTag], server)
|
||||
);
|
||||
OverlayDataTags.push(OverlayDataTag);
|
||||
} else if (instance[OverlayDataTag] && instance[OverlayDataTag] instanceof ArrayBuffer) {
|
||||
instance[OverlayDataTag] = unpackOverlay(instance[OverlayDataTag])
|
||||
} else if (
|
||||
instance[OverlayDataTag] &&
|
||||
instance[OverlayDataTag] instanceof ArrayBuffer
|
||||
) {
|
||||
instance[OverlayDataTag] = unpackOverlay(instance[OverlayDataTag]);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -60,6 +68,7 @@ async function _getOverlayData(tag, server) {
|
||||
const config = {
|
||||
url: server.wadoRoot, //BulkDataURI is absolute, so this isn't used
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
};
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
const options = {
|
||||
@@ -71,5 +80,3 @@ async function _getOverlayData(tag, server) {
|
||||
.then(result => result[0])
|
||||
.then(unpackOverlay);
|
||||
}
|
||||
|
||||
|
||||
@@ -2,6 +2,8 @@ import { api } from 'dicomweb-client';
|
||||
import DICOMWeb from '../../DICOMWeb';
|
||||
import str2ab from '../str2ab';
|
||||
|
||||
import errorHandler from '../../errorHandler';
|
||||
|
||||
export default async function fetchPaletteColorLookupTableData(
|
||||
instance,
|
||||
server
|
||||
@@ -113,22 +115,14 @@ function _getPaletteColor(server, paletteColorLookupTableData, lutDescriptor) {
|
||||
const numLutEntries = lutDescriptor[0];
|
||||
const bits = lutDescriptor[2];
|
||||
|
||||
const readUInt16 = (byteArray, position) => {
|
||||
return byteArray[position] + byteArray[position + 1] * 256;
|
||||
};
|
||||
|
||||
const arrayBufferToPaletteColorLUT = arraybuffer => {
|
||||
const byteArray = new Uint8Array(arraybuffer);
|
||||
const byteArray = bits === 16 ?
|
||||
new Uint16Array(arraybuffer) :
|
||||
new Uint8Array(arraybuffer);
|
||||
const lut = [];
|
||||
|
||||
if (bits === 16) {
|
||||
for (let i = 0; i < numLutEntries; i++) {
|
||||
lut[i] = readUInt16(byteArray, i * 2);
|
||||
}
|
||||
} else {
|
||||
for (let i = 0; i < numLutEntries; i++) {
|
||||
lut[i] = byteArray[i];
|
||||
}
|
||||
for (let i = 0; i < numLutEntries; i++) {
|
||||
lut[i] = byteArray[i];
|
||||
}
|
||||
|
||||
return lut;
|
||||
@@ -146,6 +140,7 @@ function _getPaletteColor(server, paletteColorLookupTableData, lutDescriptor) {
|
||||
const config = {
|
||||
url: server.wadoRoot, //BulkDataURI is absolute, so this isn't used
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
};
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
const options = {
|
||||
@@ -164,6 +159,8 @@ function _getPaletteColor(server, paletteColorLookupTableData, lutDescriptor) {
|
||||
resolve(arrayBufferToPaletteColorLUT(arraybuffer));
|
||||
});
|
||||
} else {
|
||||
return Promise.resolve(arrayBufferToPaletteColorLUT(paletteColorLookupTableData));
|
||||
return Promise.resolve(
|
||||
arrayBufferToPaletteColorLUT(paletteColorLookupTableData)
|
||||
);
|
||||
}
|
||||
}
|
||||
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Block a user