Compare commits

..
Author SHA1 Message Date
ohif-bot fe9551b9b1 chore(release): publish [skip ci]
- @ohif/extension-dicom-rt@0.7.12
 - @ohif/extension-dicom-segmentation@0.7.12
 - @ohif/extension-vtk@1.12.29
 - @ohif/core@2.16.24
 - @ohif/viewer@4.12.33
2022-08-31 12:59:14 +00:00
Davide Punzo ef60156a47 Fix minor issues IDC (#2903) 2022-08-31 14:57:14 +02:00
ohif-bot 850de2903a chore(release): publish [skip ci]
- @ohif/viewer@4.12.32
2022-08-25 09:50:05 +00:00
Davide Punzo f26ed5539b IDC2859 (#2891)
* Re #2859 IDC: disable jump to for measurements in MPR mode
2022-08-25 11:48:20 +02:00
ohif-bot 21aeaa63c7 chore(release): publish [skip ci]
- @ohif/extension-vtk@1.12.28
 - @ohif/core@2.16.23
 - @ohif/ui@1.10.10
 - @ohif/viewer@4.12.31
2022-08-24 10:38:46 +00:00
Davide Punzo 2ac0d3f017 Re #2852 IDC: fix parsing of qualitative slice annotation (#2888) 2022-08-24 12:37:21 +02:00
ohif-bot efdbe8e7b4 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.12.13
 - @ohif/extension-debugging@0.3.3
 - @ohif/extension-dicom-html@1.3.22
 - @ohif/extension-vtk@1.12.27
 - @ohif/core@2.16.22
 - @ohif/viewer@4.12.30
2022-06-30 10:07:05 +00:00
Davide Punzo 67b70eaa98 IDC2797: add linking and report UI for SR displaySets (#2834) 2022-06-30 12:05:47 +02:00
ohif-bot 5150ed9427 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.12.12
 - @ohif/extension-lesion-tracker@0.2.2
 - @ohif/extension-vtk@1.12.26
 - @ohif/core@2.16.21
 - @ohif/ui@1.10.9
 - @ohif/viewer@4.12.29
2022-06-29 02:26:24 +00:00
Davide Punzo 1bcb0acf9f IDC2797: improving UI for SR qualitative measurements and bug fixes (#2832) 2022-06-29 04:24:35 +02:00
ohif-bot 5d6cf2a609 chore(release): publish [skip ci]
- @ohif/extension-vtk@1.12.25
 - @ohif/core@2.16.20
 - @ohif/viewer@4.12.28
2022-06-28 11:18:54 +00:00
Davide Punzo 9f813e0ea0 fix: Re IDC2797, fix double parsing of SR qualitative annotations (#2830) 2022-06-28 13:17:16 +02:00
ohif-bot 49de44ba34 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.12.11
 - @ohif/extension-vtk@1.12.24
 - @ohif/core@2.16.19
 - @ohif/viewer@4.12.27
2022-06-14 12:14:35 +00:00
Davide Punzo b04e186274 feat IDC #2797: add support for SR qualitative annotation per instance (#2822) 2022-06-14 14:12:27 +02:00
ohif-bot c59d66412f chore(release): publish [skip ci]
- @ohif/extension-vtk@1.12.23
 - @ohif/core@2.16.18
 - @ohif/viewer@4.12.26
2022-04-22 08:54:26 +00:00
Davide Punzo f8b4ccbb59 IDC: Fix undefined return in getDerivedDatasets (#2784) 2022-04-22 10:53:01 +02:00
ohif-bot 5426773ffc chore(release): publish [skip ci]
- @ohif/extension-dicom-tag-browser@0.2.23
 - @ohif/extension-vtk@1.12.22
 - @ohif/core@2.16.17
 - @ohif/ui@1.10.8
 - @ohif/viewer@4.12.25
2022-04-06 16:24:23 +00:00
Davide Punzo a507a00f59 Fix thumbnail loading bar (#2772) 2022-04-06 18:23:02 +02:00
Davide Punzo cedeb756c0 Re IDC #2762: fix thumbnail series type for unsupported SOPClassUID (#2770) 2022-04-06 17:10:00 +02:00
ohif-bot 64385485b6 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.12.10
 - @ohif/extension-dicom-html@1.3.21
 - @ohif/extension-dicom-rt@0.7.11
 - @ohif/extension-dicom-segmentation@0.7.11
 - @ohif/extension-dicom-tag-browser@0.2.22
 - @ohif/extension-vtk@1.12.21
 - @ohif/core@2.16.16
 - @ohif/viewer@4.12.24
2022-04-05 07:40:48 +00:00
Davide Punzo 32828d9a6e Re IDC #2765: fix loading of segmentations at first startup (#2768)
Re IDC #2761: fix loading of segmentations

update dcmjs to 0.19.9
2022-04-05 09:39:22 +02:00
ohif-bot b94d4782d1 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.12.9
 - @ohif/extension-dicom-html@1.3.20
 - @ohif/extension-dicom-rt@0.7.10
 - @ohif/extension-dicom-segmentation@0.7.10
 - @ohif/extension-dicom-tag-browser@0.2.21
 - @ohif/extension-vtk@1.12.20
 - @ohif/core@2.16.15
 - @ohif/viewer@4.12.23
2022-03-25 11:17:54 +00:00
Igor Octaviano 36b47ce3a3 Merge pull request #2750 from OHIF/igoroctaviano/dcmjs-0.19.8
Update dependency: dcmjs@0.19.8
2022-03-25 08:16:36 -03:00
igoroctaviano fe57c00577 Update dependency: dcmjs@0.19.8
dcmjs
  * @ohif/core: 0.19.7 → 0.19.8
  * @ohif/extension-cornerstone: 0.19.7 → 0.19.8
  * @ohif/extension-dicom-html: 0.19.7 → 0.19.8
  * @ohif/extension-dicom-rt: 0.19.7 → 0.19.8
  * @ohif/extension-dicom-segmentation: 0.19.7 → 0.19.8
  * @ohif/extension-dicom-tag-browser: 0.19.7 → 0.19.8
  * @ohif/extension-vtk: 0.19.7 → 0.19.8
  * @ohif/viewer: 0.19.7 → 0.19.8
2022-03-25 07:45:50 -03:00
ohif-bot 21a3bc2ded chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.12.8
 - @ohif/extension-dicom-html@1.3.19
 - @ohif/extension-dicom-rt@0.7.9
 - @ohif/extension-dicom-segmentation@0.7.9
 - @ohif/extension-dicom-tag-browser@0.2.20
 - @ohif/extension-vtk@1.12.19
 - @ohif/core@2.16.14
 - @ohif/viewer@4.12.22
2022-03-14 17:19:00 +00:00
Davide Punzo b6b09f22fc IDC2733: update dcmjs to version 0.19.7 (#2745) 2022-03-14 18:17:28 +01:00
ohif-bot 64a4d60e52 chore(release): publish [skip ci]
- @ohif/extension-vtk@1.12.18
 - @ohif/core@2.16.13
 - @ohif/viewer@4.12.21
2022-03-14 16:26:55 +00:00
0ba796c73c fix: Update fetchPaletteColorLookupTableData: LUT Entries shall be 0 if the table entries value is 2^16 (#2395)
Opened issue https://github.com/OHIF/Viewers/issues/2366. 

Following http://dicom.nema.org/medical/Dicom/2018d/output/chtml/part03/sect_C.7.6.3.html#sect_C.7.6.3.1.5, LUT Entries shall be 0 if the table entries value is 2^16.

If numLutEntries is 0, there is no for loop and return empty lut array.

Solution:

const numLutEntries = lutDescriptor[0] ? lutDescriptor[0] : 65536;

This is often used by Philips Ultrasound equipments.

Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
2022-03-14 17:25:19 +01:00
ohif-bot cb7fafb1d6 chore(release): publish [skip ci]
- @ohif/extension-vtk@1.12.17
 - @ohif/ui@1.10.7
 - @ohif/viewer@4.12.20
2022-03-14 16:20:31 +00:00
ladeirarodolfo 7164d1a654 fix: remove docz + node version fix on docker (#2743)
* fix: docz uses too outdated packages and current documentation hasnt being updated oftenly. removing it

* fix: node docker version to prevent node req "^12.13.0 || ^14.15.0 || >=16" issue
2022-03-14 17:18:26 +01:00
ohif-bot 383a0ef167 chore(release): publish [skip ci]
- @ohif/extension-debugging@0.3.2
 - @ohif/viewer@4.12.19
2022-03-10 13:26:11 +00:00
Davide Punzo 56bd49a0cd Re IDC #2698 : fix overflow text and adding referenced Segs and RTSTRUCT series info in the debug dialog (#2735) 2022-03-10 14:23:01 +01:00
ohif-bot 755b283574 chore(release): publish [skip ci]
- @ohif/extension-vtk@1.12.16
 - @ohif/core@2.16.12
 - @ohif/viewer@4.12.18
2022-02-15 10:41:51 +00:00
Igor Octaviano a8a4fcee40 Merge pull request #2708 from OHIF/igoroctaviano/bump-libs
refactor: 💡 Bump lodash and immer to avoid vulnerabilities
2022-02-15 07:38:15 -03:00
igoroctaviano 9892320ffb refactor: 💡 Bump lodash and immer to avoid vulnerabilities
Bump lodash and immer to avoid vulnerabilities
2022-02-14 18:50:14 -03:00
ohif-bot 28befb1ea6 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.12.7
 - @ohif/extension-dicom-html@1.3.18
 - @ohif/extension-dicom-rt@0.7.8
 - @ohif/extension-dicom-segmentation@0.7.8
 - @ohif/extension-dicom-tag-browser@0.2.19
 - @ohif/extension-vtk@1.12.15
 - @ohif/core@2.16.11
 - @ohif/viewer@4.12.17
2022-02-03 17:12:08 +00:00
Davide Punzo c554c5fac2 IDC Re #2656: update dcmjs 0.19.4 and change tol to 0.01. + fix boundary cases in parseSCOORD3D (#2699)
* IDC: update dcmjs to version 0.19.4

* IDC Re #2656: change tol to 0.01 for segs in dcmjs. + fix boundary cases in parseSCOORD3D
2022-02-03 18:08:05 +01:00
ohif-bot 6e3a58931a chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.12.6
 - @ohif/extension-dicom-html@1.3.17
 - @ohif/extension-vtk@1.12.14
 - @ohif/core@2.16.10
 - @ohif/ui@1.10.6
 - @ohif/viewer@4.12.16
2022-02-03 08:37:00 +00:00
Davide Punzoandigoroctaviano 5beb12a7fc IDC (Re #1215): Feat/v2 annotations (#2658)
* Add scoord3d parse / display tool to v2

* Update measurement panel with sr measurements

* Update measurement panel to display read only items

* Cleanup debugger statement

* Check for empty measurement

* fix SCOORD3D coordinates

* Update getRenderableData.js

* fix scoord3d coordinate transformation

* implement logic to detect the ReferencedSOPInstanceUID if missing in the measurement. Fix also world to IJ coordinates.

* Fix broken unit test / import

* fix comment style

* Init tools only once

* restore default config dcmjs server

Co-authored-by: igoroctaviano <igoroctaviano@gmail.com>
2022-02-03 09:33:02 +01:00
ohif-bot 1953118c8a chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.12.5
 - @ohif/extension-dicom-html@1.3.16
 - @ohif/extension-dicom-rt@0.7.7
 - @ohif/extension-dicom-segmentation@0.7.7
 - @ohif/extension-dicom-tag-browser@0.2.18
 - @ohif/extension-vtk@1.12.13
 - @ohif/core@2.16.9
 - @ohif/viewer@4.12.15
2022-02-02 15:09:29 +00:00
Davide Punzo 7807f849f2 IDC: update dcmjs to version 0.19.3 (#2697) 2022-02-02 16:06:14 +01:00
ohif-bot b426256df5 chore(release): publish [skip ci]
- @ohif/viewer@4.12.14
2022-01-31 15:05:24 +00:00
Josiah VinsonandJosiah Vinson c9b7e97f9c Fixing broken OpenResty / Orthanc recipes and updating doc (#2652)
* Updating docker files and documentation for OpenResty / Orthanc recipes.

* fixing link formatting

Co-authored-by: Josiah Vinson <jovinson@microsoft.com>
2022-01-31 10:02:18 -05:00
ohif-bot 0fc7d93d73 chore(release): publish [skip ci]
- @ohif/extension-dicom-pdf@1.1.2
 - @ohif/extension-vtk@1.12.12
 - @ohif/core@2.16.8
 - @ohif/viewer@4.12.13
2022-01-29 01:06:23 +00:00
Bill Wallace 33307d3cd2 Feat/v2 e2e static tests (#2684)
Use the static data for hte e2e tests
2022-01-28 20:02:30 -05:00
ohif-bot c3ce909434 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.12.4
 - @ohif/extension-dicom-html@1.3.15
 - @ohif/extension-dicom-rt@0.7.6
 - @ohif/extension-dicom-segmentation@0.7.6
 - @ohif/extension-dicom-tag-browser@0.2.17
 - @ohif/extension-vtk@1.12.11
 - @ohif/core@2.16.7
 - @ohif/viewer@4.12.12
2022-01-20 09:18:41 +00:00
Davide Punzo ad2c750503 IDC update dcmjs to v0.19.2 (#2672)
* IDC: update dcmjs with SEG loading regression fix
2022-01-20 10:15:19 +01:00
ohif-bot cceb61f123 chore(release): publish [skip ci]
- @ohif/extension-dicom-rt@0.7.5
 - @ohif/viewer@4.12.11
2022-01-19 09:29:16 +00:00
Davide Punzo 13bcba8c39 IDC #2657: fix rt struct panel update (#2666)
* Fix observation in RT panel
2022-01-19 10:25:42 +01:00
ohif-bot d2db026158 chore(release): publish [skip ci]
- @ohif/extension-vtk@1.12.10
 - @ohif/core@2.16.6
 - @ohif/viewer@4.12.10
2022-01-13 13:21:38 +00:00
Ștefan Silviu-AlexandruandStefan Silviu e4b0552db4 feature: configurable max prefetch request count (#2632)
* feature: configurable max prefetch request count

* update name and default value for prefetch number

Co-authored-by: Stefan Silviu <silviu.stefan@atta.systems>
2022-01-13 08:18:29 -05:00
ohif-bot d7ba2fac69 chore(release): publish [skip ci]
- @ohif/extension-vtk@1.12.9
 - @ohif/core@2.16.5
 - @ohif/viewer@4.12.9
2021-12-23 22:25:30 +00:00
Alireza 761d54fbbf fix: DICOMFileLoadingListener typo in method name (#2647) 2021-12-23 17:22:35 -05:00
ohif-bot 79548d2380 chore(release): publish [skip ci]
- @ohif/extension-vtk@1.12.8
 - @ohif/core@2.16.4
 - @ohif/viewer@4.12.8
2021-12-23 20:38:37 +00:00
6a401c9e52 fix: SeriesTime and SeriesDate are only set for the first series and undefined for the remaining ones (#2476)
* set SeriesDate and SeriesTime for all series, instead of only for the first series

* set SeriesDate and SeriesTime only when they are undefined

* fix: equality operator

Co-authored-by: Christian El Salloum <christian.elsalloum@emtensor.com>
Co-authored-by: Alireza <ar.sedghi@gmail.com>
2021-12-23 15:35:37 -05:00
Yo Yehudi 23376d279d chore: Add research notice (#2458) 2021-12-23 12:01:07 -05:00
ohif-bot 4110b0422c chore(release): publish [skip ci]
- @ohif/extension-dicom-tag-browser@0.2.16
2021-12-10 09:38:52 +00:00
Davide Punzo ed501bb462 IDC Re #2633: fix slider min and max (#2634)
* IDC Re #2633: fix slider min and max
2021-12-10 10:33:30 +01:00
Davide Punzo abf050e162 update docker remote version for CI (#2629) 2021-12-02 13:56:59 +01:00
ohif-bot 35ed82e161 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.12.3
 - @ohif/extension-debugging@0.3.1
 - @ohif/extension-dicom-html@1.3.14
 - @ohif/extension-dicom-pdf@1.1.1
 - @ohif/extension-dicom-rt@0.7.4
 - @ohif/extension-dicom-segmentation@0.7.5
 - @ohif/extension-dicom-tag-browser@0.2.15
 - @ohif/extension-vtk@1.12.7
 - @ohif/core@2.16.3
 - @ohif/viewer@4.12.7
2021-12-02 11:57:19 +00:00
Davide Punzo d0ccc22fd9 Update cornerstone deps (#2628)
* update cornerstone deps
2021-12-02 12:53:41 +01:00
ohif-bot 31841c495f chore(release): publish [skip ci]
- @ohif/extension-dicom-tag-browser@0.2.14
 - @ohif/extension-vtk@1.12.6
 - @ohif/core@2.16.2
 - @ohif/ui@1.10.5
 - @ohif/viewer@4.12.6
2021-11-30 14:20:06 +00:00
Davide Punzo 65505d9bce Re IDC #2604: show series (with unsupported modalities) on slides panel and on tag explorer (#2621)
* Re IDC #2604: show series (with unsupported modalities) on slides panel and on tag explorer
2021-11-30 15:15:51 +01:00
ohif-bot 460fdeb534 chore(release): publish [skip ci]
- @ohif/extension-dicom-segmentation@0.7.4
 - @ohif/viewer@4.12.5
2021-10-27 13:10:24 +00:00
Igor Octaviano f4b7091ae4 Merge pull request #2596 from OHIF/fix/ohif-2590
Re #2590: Fix segments visibility handler
2021-10-27 10:06:35 -03:00
Davide Punzo 1e72684455 Re #2590: Fix segments visibility handler 2021-10-26 13:00:01 +02:00
186 changed files with 6590 additions and 8522 deletions

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+11 -11
View File
@@ -25,11 +25,9 @@ executors:
docker:
# Primary container image where all steps run.
- image: 'cypress/browsers:node14.15.0-chrome86-ff82'
- image: 'ohif/viewer-testdata:0.1-test'
defaults: &defaults
docker:
- image: circleci/node:14.15.0
- image: cimg/node:14.19
environment:
TERM: xterm # Enable colors in term
QUICK_BUILD: true
@@ -119,6 +117,7 @@ jobs:
command: yarn install --frozen-lockfile
- setup_remote_docker:
version: 19.03.13
docker_layer_caching: false
- run:
@@ -295,6 +294,7 @@ jobs:
- attach_workspace:
at: ~/repo
- setup_remote_docker:
version: 19.03.13
docker_layer_caching: false
- run:
name: Build and push Docker image
@@ -347,8 +347,8 @@ workflows:
store_artifacts: true
working_directory: platform/viewer
build:
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
yarn run build
git submodule update --init && npx cross-env QUICK_BUILD=true
APP_CONFIG=config/e2e.js yarn run build
start: yarn run test:e2e:serve
spec: 'cypress/integration/common/**/*,cypress/integration/pwa/**/*'
wait-on: 'http://localhost:3000'
@@ -375,8 +375,8 @@ workflows:
store_artifacts: true
working_directory: platform/viewer
build:
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
yarn run build:package
git submodule update --init && npx cross-env QUICK_BUILD=true
APP_CONFIG=config/e2e.js yarn run build:package
start: yarn run test:e2e:serve
spec: 'cypress/integration/common/**/*,cypress/integration/script-tag/**/*'
wait-on: 'http://localhost:3000'
@@ -408,8 +408,8 @@ workflows:
store_artifacts: false
working_directory: platform/viewer
build:
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
yarn run build
git submodule update --init && npx cross-env QUICK_BUILD=true
APP_CONFIG=config/e2e.js yarn run build
# start server --> verify running --> percy + chrome + cypress
command: yarn run test:e2e:dist
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
@@ -487,8 +487,8 @@ workflows:
store_artifacts: false
working_directory: platform/viewer
build:
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
yarn run build
git submodule update --init && npx cross-env QUICK_BUILD=true
APP_CONFIG=config/e2e.js yarn run build
# start server --> verify running --> percy + chrome + cypress
command: yarn run test:e2e:dist
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
-2
View File
@@ -8,7 +8,6 @@ docs/_book
src/version.js
junit.xml
coverage/
.docz/
*.js.map
.yarn
platform/docs/.docusaurus
@@ -38,4 +37,3 @@ screenshots/
# Locize settings
.locize
+3
View File
@@ -0,0 +1,3 @@
[submodule "testdata"]
path = testdata
url = https://github.com/OHIF/viewer-testdata-dicomweb.git
-10
View File
@@ -22,16 +22,6 @@ mv platform/viewer/dist/* .netlify/www/pwa -v
# Build && Move script output
# yarn run build:package
# Build && Move Docz Output
# Using local yarn install to prevent Gatsby from needing to access
# node_modules above the platform/ui folder
cd platform/ui
yarn install
yarn run build
cd ../..
mkdir -p ./.netlify/www/ui
mv platform/ui/.docz/dist/* .netlify/www/ui -v
# Cache all of the node_module dependencies in
# extensions, modules, and platform packages
yarn run lerna:cache
+1
View File
@@ -0,0 +1 @@
14.18.0
+1 -1
View File
@@ -28,7 +28,7 @@ module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
const config = {
mode: isProdBuild ? 'production' : 'development',
devtool: isProdBuild ? 'source-map' : 'cheap-module-eval-source-map',
devtool: isProdBuild ? 'source-map' : 'eval-cheap-module-source-map',
entry: {
app: `${SRC_DIR}/index.js`,
},
+2 -2
View File
@@ -21,7 +21,7 @@
# Stage 1: Build the application
# docker build -t ohif/viewer:latest .
FROM node:15.13.0-slim as builder
FROM node:14-slim as builder
RUN mkdir /usr/src/app
WORKDIR /usr/src/app
@@ -42,7 +42,7 @@ COPY yarn.lock /usr/src/app/yarn.lock
RUN apt-get update && apt-get install -y python make g++
# Run the install before copying the rest of the files
RUN yarn config set workspaces-experimental true
RUN yarn install
RUN yarn install --verbose
ENV PATH /usr/src/app/node_modules/.bin:$PATH
ENV QUICK_BUILD true
+11
View File
@@ -273,6 +273,17 @@ development of OHIF Viewer:
Leidos Biomedical Research under Task Order HHSN26100071 from NCI.
[IDC Viewer](https://learn.canceridc.dev/portal/visualization) is a customized
version of the OHIF Viewer.
### Research notice
Please note that this repository is participating in a study into sustainability
of open source projects. Data will be gathered about this repository for
approximately the next 12 months, starting from June 2021.
Data collected will include number of contributors, number of PRs, time taken to
close/merge these PRs, and issues closed.
For more information, please visit
[our informational page](https://sustainable-open-science-and-software.github.io/) or download our [participant information sheet](https://sustainable-open-science-and-software.github.io/assets/PIS_sustainable_software.pdf).
## License
@@ -8,7 +8,9 @@ OHIF Viewer and its medical imaging data. This post covers one of many potential
setups that accomplish that. Please note, noticably absent is user account
control.
Do not use this recipe to host sensitive medical data on the open web. Depending
> **Do not use this recipe to host sensitive medical data on the open web!**
Depending
on your company's policies, this may be an appropriate setup on an internal
network when protected with a server's basic authentication. For a more robust
setup, check out our [user account control recipe](./user-account-control.md)
@@ -23,13 +25,13 @@ Our two biggest hurdles when hosting our image archive and web client are:
### Handling Web Requests
We mittigate our first issue by allowing [Nginx][nginx] to handle incoming web
We mitigate our first issue by allowing [Nginx][nginx] to handle incoming web
requests. Nginx is open source software for web serving, reverse proxying,
caching, and more. It's designed for maximum performance and stability --
allowing us to more reliably serve content than Orthanc's built-in server can.
More specifically, we accomplish this by using a
[`reverse proxy`](https://en.wikipedia.org/wiki/Reverse_proxy) to retrieve
[`reverse proxy`](https://en.wikipedia.org/wiki/Reverse_proxy) to retrieve
resources from our image archive (Orthanc), and when accessing its web admin.
> A reverse proxy is a type of proxy server that retrieves resources on behalf
@@ -38,7 +40,7 @@ resources from our image archive (Orthanc), and when accessing its web admin.
### CORS Issues
Cross-Origin Resource Sharing (CORS) is a mechanism that uses HTTP headers to
[Cross-Origin Resource Sharing][understanding-cors] (CORS) is a mechanism that uses HTTP headers to
tell a browser which web applications have permission to access selected
resources from a server at a different origin (domain, protocol, port). IE. By
default, a Web App located at `http://my-website.com` can't access resources
@@ -51,9 +53,6 @@ We can solve this one of two ways:
**This solution uses the first approach.**
You can read more about CORS in this Medium article: [Understanding
CORS][understanding-cors]
### Diagram
This setup allows us to create a setup similar to the one pictured below:
@@ -73,6 +72,8 @@ This setup allows us to create a setup similar to the one pictured below:
- Docker
- [Docker for Mac](https://docs.docker.com/docker-for-mac/)
- [Docker for Windows](https://docs.docker.com/docker-for-windows/)
- Node 16.x with optional Python and Visual Studio Build Tools ([webpack 4 has an issue](https://github.com/webpack/webpack/issues/14532) with Node 17.x)
- [Node.js](https://nodejs.org/en/download/)
_Not sure if you have `docker` installed already? Try running `docker --version`
in command prompt or terminal_
@@ -81,7 +82,7 @@ in command prompt or terminal_
_Spin Things Up_
- Navigate to `<project-root>/docker/OpenResty-Orthanc` in your shell
- Navigate to `./platform/viewer/.recipes/OpenResty-Orthanc` in your shell
- Run `docker-compose up`
_Upload Your First Study_
@@ -94,16 +95,16 @@ _Upload Your First Study_
### Troubleshooting
_Exit code 137_
#### Exit code 137
This means Docker ran out of memory. Open Docker Desktop, go to the `advanced`
tab, and increase the amount of Memory available.
_Cannot create container for service X_
#### Cannot create container for service X
Use this one with caution: `docker system prune`
_X is already running_
#### X is already running
Stop running all containers:
@@ -120,15 +121,12 @@ likely want to update:
#### OHIF Viewer
The OHIF Viewer's configuration is imported from a static `.js` file. The
configuration we use is set to a specific file when we build the viewer, and
configuration we use is set to [a specific file][config-ohif] when we build the viewer, and
determined by the env variable: `APP_CONFIG`. You can see where we set its value
in the `dockerfile` for this solution:
`ENV APP_CONFIG=config/docker_openresty-orthanc.js`
You can find the configuration we're using here:
`/public/config/docker_openresty-orthanc.js`
To rebuild the `webapp` image created by our `dockerfile` after updating the
Viewer's configuration, you can run:
@@ -137,7 +135,7 @@ Viewer's configuration, you can run:
#### Other
All other files are found in: `/docker/OpenResty-Orthanc/`
All other files in this directory include
| Service | Configuration | Docs |
| ----------------- | --------------------------------- | ------------------------------------------- |
@@ -236,6 +234,8 @@ members put together:
[orthanc-docs]: http://book.orthanc-server.com/users/configuration.html#configuration
[lua-resty-openidc-docs]: https://github.com/zmartzone/lua-resty-openidc
<!-- SRC -->
[config-ohif]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/config/docker_openresty-orthanc.js
[dockerfile]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/.recipes/OpenResty-Orthanc/dockerfile
[config-nginx]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/.recipes/OpenResty-Orthanc/config/nginx.conf
[config-orthanc]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/.recipes/OpenResty-Orthanc/config/orthanc.json
+88
View File
@@ -3,6 +3,94 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [2.12.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.12...@ohif/extension-cornerstone@2.12.13) (2022-06-30)
**Note:** Version bump only for package @ohif/extension-cornerstone
## [2.12.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.11...@ohif/extension-cornerstone@2.12.12) (2022-06-29)
**Note:** Version bump only for package @ohif/extension-cornerstone
## [2.12.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.10...@ohif/extension-cornerstone@2.12.11) (2022-06-14)
**Note:** Version bump only for package @ohif/extension-cornerstone
## [2.12.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.9...@ohif/extension-cornerstone@2.12.10) (2022-04-05)
**Note:** Version bump only for package @ohif/extension-cornerstone
## [2.12.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.8...@ohif/extension-cornerstone@2.12.9) (2022-03-25)
**Note:** Version bump only for package @ohif/extension-cornerstone
## [2.12.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.7...@ohif/extension-cornerstone@2.12.8) (2022-03-14)
**Note:** Version bump only for package @ohif/extension-cornerstone
## [2.12.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.6...@ohif/extension-cornerstone@2.12.7) (2022-02-03)
**Note:** Version bump only for package @ohif/extension-cornerstone
## [2.12.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.5...@ohif/extension-cornerstone@2.12.6) (2022-02-03)
**Note:** Version bump only for package @ohif/extension-cornerstone
## [2.12.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.4...@ohif/extension-cornerstone@2.12.5) (2022-02-02)
**Note:** Version bump only for package @ohif/extension-cornerstone
## [2.12.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.3...@ohif/extension-cornerstone@2.12.4) (2022-01-20)
**Note:** Version bump only for package @ohif/extension-cornerstone
## [2.12.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.2...@ohif/extension-cornerstone@2.12.3) (2021-12-02)
**Note:** Version bump only for package @ohif/extension-cornerstone
## [2.12.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.1...@ohif/extension-cornerstone@2.12.2) (2021-10-26)
**Note:** Version bump only for package @ohif/extension-cornerstone
+8 -7
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone",
"version": "2.12.2",
"version": "2.12.13",
"description": "OHIF extension for Cornerstone",
"author": "OHIF",
"license": "MIT",
@@ -32,19 +32,20 @@
"peerDependencies": {
"@ohif/core": "^0.50.0",
"@ohif/ui": "^0.50.0",
"cornerstone-core": "^2.5.0",
"cornerstone-core": "^2.6.1",
"cornerstone-math": "^0.1.9",
"cornerstone-tools": "^6.0.0",
"cornerstone-wado-image-loader": "^4.0.3",
"dcmjs": "0.18.10",
"dicom-parser": "^1.8.9",
"cornerstone-tools": "^6.0.6",
"cornerstone-wado-image-loader": "^4.1.0",
"dcmjs": "0.19.9",
"dicom-parser": "^1.8.11",
"hammerjs": "^2.0.8",
"prop-types": "^15.6.2",
"react": "^16.8.6",
"react-dom": "^16.8.6",
"react-redux": "^6.0.0",
"react-resize-detector": "^3.4.0",
"redux": "^4.0.1"
"redux": "^4.0.1",
"styled-components": "^5.3.5"
},
"dependencies": {
"@babel/runtime": "^7.5.5",
@@ -3,6 +3,7 @@ import OHIF from '@ohif/core';
import { connect } from 'react-redux';
import throttle from 'lodash.throttle';
import { setEnabledElement } from './state';
import initSRTools from './tools/initSRTools';
const { setViewportActive, setViewportSpecificData } = OHIF.redux.actions;
const {
@@ -92,6 +93,7 @@ const mapDispatchToProps = (dispatch, ownProps) => {
plugin: 'cornerstone',
})
);
initSRTools(enabledElement);
},
onMeasurementsChanged: (event, action) => {
@@ -5,6 +5,7 @@ import ConnectedCornerstoneViewport from './ConnectedCornerstoneViewport';
import OHIF from '@ohif/core';
import PropTypes from 'prop-types';
import cornerstone from 'cornerstone-core';
import checkForSRAnnotations from './tools/checkForSRAnnotations';
const { StackManager } = OHIF.utils;
@@ -187,6 +188,8 @@ class OHIFCornerstoneViewport extends Component {
displaySet.SOPInstanceUID !== prevDisplaySet.SOPInstanceUID ||
displaySet.frameIndex !== prevDisplaySet.frameIndex
) {
const { viewportIndex } = this.props;
checkForSRAnnotations({ displaySet, viewportIndex });
this.setStateFromProps();
}
}
@@ -234,11 +237,21 @@ class OHIFCornerstoneViewport extends Component {
}
};
const warningsOverlay = props => {
const overlay = props => {
const displaySet = this.props.viewportData.displaySet;
let filteredSRLabels;
if (displaySet.SRLabels && displaySet.SRLabels.length !== 0) {
filteredSRLabels = displaySet.SRLabels.filter(
SRLabel =>
SRLabel.ReferencedSOPInstanceUID === displaySet.SOPInstanceUID
);
}
return (
<OHIFCornerstoneViewportOverlay
{...props}
inconsistencyWarnings={inconsistencyWarnings}
SRLabels={filteredSRLabels}
/>
);
};
@@ -251,7 +264,7 @@ class OHIFCornerstoneViewport extends Component {
imageIdIndex={currentImageIdIndex}
onNewImageDebounced={newImageHandler}
onNewImageDebounceTime={300}
viewportOverlayComponent={warningsOverlay}
viewportOverlayComponent={overlay}
stackPrefetch={this.props.stackPrefetch}
isStackPrefetchEnabled={this.props.isStackPrefetchEnabled}
// ~~ Connected (From REDUX)
@@ -33,6 +33,10 @@
bottom: 140px;
left: 20px;
}
.OHIFCornerstoneViewportOverlay .bottom-left3 {
bottom: 110px;
left: -20px;
}
.OHIFCornerstoneViewportOverlay .bottom-right {
bottom: 20px;
right: 20px;
@@ -1,5 +1,6 @@
import { PureComponent } from 'react';
import React from 'react';
import styled from 'styled-components';
import PropTypes from 'prop-types';
import cornerstone from 'cornerstone-core';
import './OHIFCornerstoneViewportOverlay.css';
@@ -9,13 +10,27 @@ import {
formatDICOMDate,
formatDICOMTime,
formatPN,
getCompression
getCompression,
} from '../utils/formatStudy';
import classNames from 'classnames';
import { Icon } from '@ohif/ui/src/elements/Icon';
import { Tooltip } from '@ohif/ui/src/components/tooltip';
import { OverlayTrigger } from '@ohif/ui/src/components/overlayTrigger';
const Button = styled.button`
color: white;
padding: 2px 7px;
border-radius: 10px;
outline: 0;
text-transform: none;
margin: 2px 2px;
cursor: pointer;
&:disabled {
cursor: default;
opacity: 0.9;
}
`;
class OHIFCornerstoneViewportOverlay extends PureComponent {
static propTypes = {
scale: PropTypes.number.isRequired,
@@ -30,11 +45,19 @@ class OHIFCornerstoneViewportOverlay extends PureComponent {
imageId: PropTypes.string.isRequired,
imageIndex: PropTypes.number.isRequired,
stackSize: PropTypes.number.isRequired,
inconsistencyWarnings: PropTypes.array.isRequired
inconsistencyWarnings: PropTypes.array,
SRLabels: PropTypes.array,
};
render() {
const { imageId, scale, windowWidth, windowCenter, inconsistencyWarnings } = this.props;
const {
imageId,
scale,
windowWidth,
windowCenter,
inconsistencyWarnings,
SRLabels,
} = this.props;
if (!imageId) {
return null;
@@ -72,8 +95,11 @@ class OHIFCornerstoneViewportOverlay extends PureComponent {
const { imageIndex, stackSize } = this.props;
const inconsistencyWarningsOn = inconsistencyWarnings && inconsistencyWarnings.length !== 0 ? true : false;
const getWarningContent = (warningList) => {
const inconsistencyWarningsOn =
inconsistencyWarnings && inconsistencyWarnings.length !== 0
? true
: false;
const getWarningContent = warningList => {
if (Array.isArray(warningList)) {
const listedWarnings = warningList.map((warn, index) => {
return <li key={index}>{warn}</li>;
@@ -86,33 +112,100 @@ class OHIFCornerstoneViewportOverlay extends PureComponent {
};
const getWarningInfo = (seriesNumber, inconsistencyWarnings) => {
return(
return (
<React.Fragment>
{inconsistencyWarnings.length != 0 ? (
<OverlayTrigger
key={seriesNumber}
placement="left"
overlay={
<Tooltip
placement="left"
className="in tooltip-warning"
id="tooltip-left"
>
<div className="warningTitle">Series Inconsistencies</div>
<div className="warningContent">{getWarningContent(inconsistencyWarnings)}</div>
</Tooltip>
}
>
<div className={classNames('warning')}>
<span className="warning-icon">
<Icon name="exclamation-triangle" />
</span>
</div>
</OverlayTrigger>
) : (
<React.Fragment></React.Fragment>
{inconsistencyWarnings.length != 0 ? (
<OverlayTrigger
key={seriesNumber}
placement="left"
overlay={
<Tooltip
placement="left"
className="in tooltip-warning"
id="tooltip-left"
>
<div className="warningTitle">Series Inconsistencies</div>
<div className="warningContent">
{getWarningContent(inconsistencyWarnings)}
</div>
</Tooltip>
}
>
<div className={classNames('warning')}>
<span className="warning-icon">
<Icon name="exclamation-triangle" />
</span>
</div>
</OverlayTrigger>
) : (
<React.Fragment></React.Fragment>
)}
</React.Fragment>
</React.Fragment>
);
};
const SRLabelsOn = SRLabels && SRLabels.length !== 0 ? true : false;
/**/
const getSRLabelsContent = SRLabels => {
if (Array.isArray(SRLabels)) {
const listedSRLabels = SRLabels.map((SRLabel, index) => {
const color = SRLabel.labels.color;
return (
SRLabel.labels.visible && (
<OverlayTrigger
key={index}
placement="top"
overlay={
<Tooltip
placement="top"
className="in tooltip-warning"
id="tooltip-top"
>
<div className="warningTitle">
{' '}
Coding scheme designators{' '}
</div>
<div className="warningContent">
{SRLabel.labels.labelCodingSchemeDesignator +
' : ' +
SRLabel.labels.valueCodingSchemeDesignator}
</div>
</Tooltip>
}
>
<div style={{ display: 'inline-block' }}>
<Button
style={{
backgroundColor: color,
}}
disabled={true}
key={index}
>
{SRLabel.labels.label + ' : ' + SRLabel.labels.value}
</Button>
</div>
</OverlayTrigger>
)
);
});
return <ol>{listedSRLabels}</ol>;
} else {
return <React.Fragment></React.Fragment>;
}
};
const getSRLabelsInfo = SRLabels => {
return (
<React.Fragment>
{SRLabels.length != 0 ? (
getSRLabelsContent(SRLabels)
) : (
<React.Fragment></React.Fragment>
)}
</React.Fragment>
);
};
@@ -134,7 +227,14 @@ class OHIFCornerstoneViewportOverlay extends PureComponent {
<div className="compressionIndicator">{compression}</div>
</div>
<div className="bottom-left2 warning">
<div>{inconsistencyWarningsOn ? getWarningInfo(seriesNumber, inconsistencyWarnings) : ''}</div>
<div>
{inconsistencyWarningsOn
? getWarningInfo(seriesNumber, inconsistencyWarnings)
: ''}
</div>
</div>
<div className="bottom-left3 warning">
<div>{SRLabelsOn ? getSRLabelsInfo(SRLabels) : ''}</div>
</div>
<div className="bottom-left overlay-element">
<div>{seriesNumber >= 0 ? `Ser: ${seriesNumber}` : ''}</div>
+4
View File
@@ -5,6 +5,8 @@ import csTools from 'cornerstone-tools';
import merge from 'lodash.merge';
import initCornerstoneTools from './initCornerstoneTools.js';
import measurementServiceMappingsFactory from './utils/measurementServiceMappings/measurementServiceMappingsFactory';
import dicomSRModule from './tools/modules/dicomSRModule';
import srModuleId from './tools/id';
/**
*
@@ -15,6 +17,8 @@ import measurementServiceMappingsFactory from './utils/measurementServiceMapping
export default function init({ servicesManager, configuration }) {
const { UIDialogService, MeasurementService } = servicesManager.services;
csTools.register('module', srModuleId, dicomSRModule);
const callInputDialog = (data, event, callback) => {
if (UIDialogService) {
let dialogId = UIDialogService.create({
@@ -0,0 +1,419 @@
import csTools, {
importInternal,
getToolState,
toolColors,
} from 'cornerstone-tools';
import cornerstone from 'cornerstone-core';
/** Internal imports */
import TOOL_NAMES from './constants/toolNames';
import SCOORD_TYPES from './constants/scoordTypes';
import id from './id';
/** Cornerstone 3rd party dev kit imports */
const draw = importInternal('drawing/draw');
const drawJoinedLines = importInternal('drawing/drawJoinedLines');
const drawCircle = importInternal('drawing/drawCircle');
const drawEllipse = importInternal('drawing/drawEllipse');
const drawHandles = importInternal('drawing/drawHandles');
const drawArrow = importInternal('drawing/drawArrow');
const getNewContext = importInternal('drawing/getNewContext');
const BaseTool = importInternal('base/BaseTool');
const drawLinkedTextBox = importInternal('drawing/drawLinkedTextBox');
/**
* @class DICOMSRDisplayTool - Renders DICOMSR data in a read only manner (i.e. as an overlay).
*
* This is a generic render tool.
*
* A single tool that, given some schema, can render
* POINT, MULTIPOINT, POLYLINE, CIRCLE, and ELLIPSE
* value types for a given imageId.
*
*
* @extends cornerstoneTools.BaseTool
*/
export default class DICOMSRDisplayTool extends BaseTool {
constructor(props = {}) {
const defaultProps = {
mixins: ['enabledOrDisabledBinaryTool'],
name: TOOL_NAMES.DICOM_SR_DISPLAY_TOOL,
};
const initialProps = Object.assign(defaultProps, props);
super(initialProps);
this._module = csTools.getModule(id);
}
renderToolData(evt) {
const eventData = evt.detail;
const { element } = eventData;
const module = this._module;
const toolState = getToolState(element, this.name);
if (!toolState) {
return;
}
const trackingUniqueIdentifiersForElement = module.getters.trackingUniqueIdentifiersForElement(
element
);
const {
activeIndex,
trackingUniqueIdentifiers,
} = trackingUniqueIdentifiersForElement;
const activeTrackingUniqueIdentifier =
trackingUniqueIdentifiers[activeIndex];
// Filter toolData to only render the data for the active SR.
const filteredToolData = toolState.data.filter(td =>
trackingUniqueIdentifiers.includes(td.TrackingUniqueIdentifier)
);
let shouldRepositionTextBoxes = false;
for (let i = 0; i < filteredToolData.length; i++) {
const data = filteredToolData[i];
const { renderableData, labels } = data;
const color =
data.TrackingUniqueIdentifier === activeTrackingUniqueIdentifier
? toolColors.getActiveColor()
: toolColors.getToolColor();
const lineWidth = 2;
const options = {
color,
lineWidth,
handleRadius: 6,
};
Object.keys(renderableData).forEach(GraphicType => {
const renderableDataForGraphicType = renderableData[GraphicType];
switch (GraphicType) {
case SCOORD_TYPES.TEXT:
break;
case SCOORD_TYPES.POINT:
this.renderPoint(renderableDataForGraphicType, eventData, options);
break;
case SCOORD_TYPES.MULTIPOINT:
this.renderMultipoint(
renderableDataForGraphicType,
eventData,
options
);
break;
case SCOORD_TYPES.POLYGON:
case SCOORD_TYPES.POLYLINE:
this.renderPolyLine(
renderableDataForGraphicType,
eventData,
options
);
break;
case SCOORD_TYPES.CIRCLE:
this.renderCircle(renderableDataForGraphicType, eventData, options);
break;
case SCOORD_TYPES.ELLIPSE:
this.renderEllipse(
renderableDataForGraphicType,
eventData,
options
);
break;
}
});
const { element } = eventData;
const context = getNewContext(eventData.canvasContext.canvas);
if (!data.handles || !data.handles.textBox) {
const textBox = {
active: false,
hasMoved: true,
movesIndependently: false,
drawnIndependently: true,
allowedOutsideImage: true,
hasBoundingBox: true,
};
const anchorPoints = _getTextBoxAnchorPointsForRenderableData(
renderableData,
eventData
);
textBox.anchorPoints = anchorPoints;
const bottomRight = {
x: Math.max(...anchorPoints.map(point => point.x)),
y: Math.max(...anchorPoints.map(point => point.y)),
};
textBox.x = bottomRight.x;
textBox.y = bottomRight.y;
data.handles = {};
data.handles.textBox = textBox;
shouldRepositionTextBoxes = true;
}
const text = _getTextBoxLinesFromLabels(labels);
function textBoxAnchorPoints() {
return data.handles.textBox.anchorPoints;
}
if (data.handles.textBox.anchorPoints.length !== 0) {
draw(context, context => {
drawLinkedTextBox(
context,
element,
data.handles.textBox,
text,
data.handles,
textBoxAnchorPoints,
color,
lineWidth,
0,
true
);
});
}
}
// TOOD -> text boxes may overlap with other annotations at the moment.
// To be fixed after we get requirements.
// if (shouldRepositionTextBoxes) {
// this.repositionTextBox(filteredToolData, eventData);
// }
}
// repositionTextBox(toolData, eventData) {
// const toolBoundingBoxes = [];
// for (let i = 0; i < toolData.length; i++) {
// const toolDataI = toolData[i];
// const { textBox } = toolDataI.handles;
// const { anchorPoints } = textBox;
// const boundingBox = _getBoundingBoxFromAnchorPoints(anchorPoints);
// // Get the textbox bounding locations.
// // Get the tool extents.
// }
// }
renderPolyLine(renderableData, eventData, options) {
const { element } = eventData;
const context = getNewContext(eventData.canvasContext.canvas);
renderableData.forEach(points => {
draw(context, context => {
drawJoinedLines(context, element, points[0], points, options);
});
});
}
renderMultipoint(renderableData, eventData, options) {
const context = getNewContext(eventData.canvasContext.canvas);
renderableData.forEach(points => {
draw(context, context => {
drawHandles(context, eventData, points, options);
});
});
}
renderPoint(renderableData, eventData, options) {
// Render single point as an arrow.
const { element, image } = eventData;
const { rows, columns } = image;
const context = getNewContext(eventData.canvasContext.canvas);
const { color, lineWidth } = options;
// Find a suitable length for the image size.
const xOffset = columns / 10;
const yOffset = rows / 10;
renderableData.forEach(points => {
const point = points[0]; // The SCOORD type is POINT so the array length is 1.
draw(context, context => {
// Draw the arrow
const handleStartCanvas = cornerstone.pixelToCanvas(element, point);
const handleEndCanvas = cornerstone.pixelToCanvas(element, {
x: point.x + xOffset,
y: point.y + yOffset,
});
drawArrow(
context,
handleEndCanvas,
handleStartCanvas,
color,
lineWidth,
false
);
});
});
}
renderCircle(renderableData, eventData, options) {
const { element } = eventData;
const context = getNewContext(eventData.canvasContext.canvas);
renderableData.forEach(circle => {
const { center, radius } = circle;
drawCircle(context, element, center, radius, options);
});
}
renderEllipse(renderableData, eventData, options) {
const { element } = eventData;
const context = getNewContext(eventData.canvasContext.canvas);
renderableData.forEach(ellipse => {
const { corner1, corner2 } = ellipse;
drawEllipse(
context,
element,
corner1,
corner2,
options,
'pixel',
0 // TODO -> Work our the initial rotation and add it here so we render appropriately rotated ellipses.
);
});
}
}
function _getTextBoxLinesFromLabels(labels) {
// TODO -> max 3 for now (label + shortAxis + longAxis), need a generic solution for this!
const labelLength = Math.min(labels.length, 3);
const lines = [];
for (let i = 0; i < labelLength; i++) {
const labelEntry = labels[i];
lines.push(`${_labelToShorthand(labelEntry.label)}${labelEntry.value}`);
}
return lines;
}
const SHORT_HAND_MAP = {
'Short Axis': 'W ',
'Long Axis': 'L ',
AREA: 'Area ',
Length: '',
CORNERSTONEFREETEXT: '',
};
function _labelToShorthand(label) {
const shortHand = SHORT_HAND_MAP[label];
if (shortHand !== undefined) {
return shortHand;
}
return label;
}
function _getTextBoxAnchorPointsForRenderableData(renderableData, eventData) {
let anchorPoints = [];
Object.keys(renderableData).forEach(GraphicType => {
const renderableDataForGraphicType = renderableData[GraphicType];
switch (GraphicType) {
case SCOORD_TYPES.TEXT:
break;
case SCOORD_TYPES.POINT:
renderableDataForGraphicType.forEach(points => {
anchorPoints = [...anchorPoints, ...points];
// Add other arrow point based on image size.
const { image } = eventData;
const { rows, columns } = image;
const xOffset = columns / 10;
const yOffset = rows / 10;
const point = points[0];
anchorPoints.push({ x: point.x + xOffset, y: point.y + yOffset });
});
break;
case SCOORD_TYPES.MULTIPOINT:
case SCOORD_TYPES.POLYLINE:
case SCOORD_TYPES.POLYGON:
renderableDataForGraphicType.forEach(points => {
anchorPoints = [...anchorPoints, ...points];
});
break;
case SCOORD_TYPES.CIRCLE:
renderableDataForGraphicType.forEach(circle => {
const { center, radius } = circle;
anchorPoints.push({ x: center.x + radius, y: center.y });
anchorPoints.push({ x: center.x - radius, y: center.y });
anchorPoints.push({ x: center.x, y: center.y + radius });
anchorPoints.push({ x: center.x, y: center.y - radius });
});
break;
case SCOORD_TYPES.ELLIPSE:
renderableDataForGraphicType.forEach(ellipse => {
const { corner1, corner2 } = ellipse;
const halfWidth = Math.abs(corner1.x - corner2.x) / 2;
const halfHeight = Math.abs(corner1.y - corner2.y) / 2;
const center = {
x: (corner1.x + corner2.x) / 2,
y: (corner1.y + corner2.y) / 2,
};
anchorPoints.push({ x: center.x + halfWidth, y: center.y });
anchorPoints.push({ x: center.x - halfWidth, y: center.y });
anchorPoints.push({ x: center.x, y: center.y + halfHeight });
anchorPoints.push({ x: center.x, y: center.y - halfHeight });
});
break;
}
});
return anchorPoints;
}
function _getBoundingBoxFromAnchorPoints(anchorPoints) {
let minX = Infinity;
let maxX = -Infinity;
let minY = Infinity;
let maxY = -Infinity;
anchorPoints.forEach(point => {
const { x, y } = point;
if (x > maxX) {
maxX = x;
} else if (x < minX) {
minX = x;
}
if (y > maxY) {
maxY = y;
} else if (y < minY) {
minY = y;
}
});
}
@@ -0,0 +1,57 @@
import csTools from 'cornerstone-tools';
import cs from 'cornerstone-core';
import OHIF from '@ohif/core';
import { getEnabledElement } from '../state';
import id from './id';
const { studyMetadataManager } = OHIF.utils;
const checkForSRAnnotations = ({ viewportIndex, displaySet }) => {
const srModule = csTools.getModule(id);
const element = getEnabledElement(viewportIndex);
if (!element) {
return;
}
const { StudyInstanceUID } = displaySet;
const studyMetadata = studyMetadataManager.get(StudyInstanceUID);
if (!studyMetadata) {
return;
}
const srDisplaySets = studyMetadata
.getDisplaySets()
.filter(ds => ds.Modality === 'SR');
if (srDisplaySets.length === 0) {
return;
}
const { measurements: _measurements } = srDisplaySets[0];
if (!_measurements || _measurements.length < 1) {
return;
}
const measurements = _measurements.filter(m => m.loaded === true);
const measurement = measurements[0];
if (!measurement) {
return;
}
srModule.setters.trackingUniqueIdentifiersForElement(
element,
measurements.map(measurement => measurement.TrackingUniqueIdentifier),
measurement
);
const { TrackingUniqueIdentifier } = measurement;
srModule.setters.activeTrackingUniqueIdentifierForElement(
element,
TrackingUniqueIdentifier
);
cs.updateImage(element);
};
export default checkForSRAnnotations;
@@ -0,0 +1,9 @@
export default {
TEXT: 'TEXT',
POINT: 'POINT',
MULTIPOINT: 'MULTIPOINT',
POLYLINE: 'POLYLINE',
CIRCLE: 'CIRCLE',
ELLIPSE: 'ELLIPSE',
POLYGON: 'POLYGON',
};
@@ -0,0 +1,5 @@
const TOOL_NAMES = {
DICOM_SR_DISPLAY_TOOL: 'DICOMSRDisplayTool',
};
export default TOOL_NAMES;
+7
View File
@@ -0,0 +1,7 @@
const id = 'org.ohif.dicom-sr';
export default id;
const SOPClassHandlerName = 'dicom-sr';
const SOPClassHandlerId = `${id}.sopClassHandlerModule.${SOPClassHandlerName}`;
export { SOPClassHandlerName, SOPClassHandlerId };
@@ -0,0 +1,108 @@
import cornerstoneTools from 'cornerstone-tools';
import DICOMSRDisplayTool from './DICOMSRDisplayTool';
import TOOL_NAMES from './constants/toolNames';
import getToolAlias from './utils/getToolAlias';
/**
* Initialize SR cornerstone tools.
*
* @param {*} targetElement
*/
const initSRTools = targetElement => {
const primaryToolId = 'Wwwc';
const toolAlias = getToolAlias(primaryToolId); // These are 1:1 for built-in only
// ~~ MAGIC
cornerstoneTools.addToolForElement(targetElement, DICOMSRDisplayTool);
cornerstoneTools.setToolEnabledForElement(
targetElement,
TOOL_NAMES.DICOM_SR_DISPLAY_TOOL
);
// ~~ Variants
cornerstoneTools.addToolForElement(
targetElement,
cornerstoneTools.LengthTool,
{
name: 'SRLength',
configuration: {
renderDashed: true,
},
}
);
cornerstoneTools.addToolForElement(
targetElement,
cornerstoneTools.ArrowAnnotateTool,
{
name: 'SRArrowAnnotate',
configuration: {
renderDashed: true,
},
}
);
cornerstoneTools.addToolForElement(
targetElement,
cornerstoneTools.BidirectionalTool,
{
name: 'SRBidirectional',
configuration: {
renderDashed: true,
},
}
);
cornerstoneTools.addToolForElement(
targetElement,
cornerstoneTools.EllipticalRoiTool,
{
name: 'SREllipticalRoi',
configuration: {
renderDashed: true,
},
}
);
cornerstoneTools.addToolForElement(
targetElement,
cornerstoneTools.RectangleRoiTool,
{
name: 'SRRectangleRoi',
configuration: {
renderDashed: true,
},
}
);
cornerstoneTools.addToolForElement(
targetElement,
cornerstoneTools.FreehandRoiTool,
{
name: 'SRFreehandRoi',
configuration: {
renderDashed: true,
},
}
);
// ~~ Business as usual
cornerstoneTools.setToolActiveForElement(targetElement, 'PanMultiTouch', {
pointers: 2,
});
cornerstoneTools.setToolActiveForElement(targetElement, 'ZoomTouchPinch', {});
// TODO: Add always dashed tool alternative aliases
// TODO: or same name... alternative config?
cornerstoneTools.setToolActiveForElement(targetElement, toolAlias, {
mouseButtonMask: 1,
});
cornerstoneTools.setToolActiveForElement(targetElement, 'Pan', {
mouseButtonMask: 4,
});
cornerstoneTools.setToolActiveForElement(targetElement, 'Zoom', {
mouseButtonMask: 2,
});
cornerstoneTools.setToolActiveForElement(
targetElement,
'StackScrollMouseWheel',
{}
);
};
export default initSRTools;
@@ -0,0 +1,61 @@
import cornerstone from 'cornerstone-core';
const state = {
TrackingUniqueIdentifier: null,
trackingIdentifiersByEnabledElementUUID: {},
};
function setTrackingUniqueIdentifiersForElement(
element,
trackingUniqueIdentifiers,
activeIndex = 0
) {
const enabledElement = cornerstone.getEnabledElement(element);
const { uuid } = enabledElement;
state.trackingIdentifiersByEnabledElementUUID[uuid] = {
trackingUniqueIdentifiers,
activeIndex,
};
}
function setActiveTrackingUniqueIdentifierForElement(
element,
TrackingUniqueIdentifier
) {
const enabledElement = cornerstone.getEnabledElement(element);
const { uuid } = enabledElement;
const trackingIdentifiersForElement =
state.trackingIdentifiersByEnabledElementUUID[uuid];
if (trackingIdentifiersForElement) {
const activeIndex = trackingIdentifiersForElement.trackingUniqueIdentifiers.findIndex(
tuid => tuid === TrackingUniqueIdentifier
);
trackingIdentifiersForElement.activeIndex = activeIndex;
}
}
function getTrackingUniqueIdentifiersForElement(element) {
const enabledElement = cornerstone.getEnabledElement(element);
const { uuid } = enabledElement;
if (state.trackingIdentifiersByEnabledElementUUID[uuid]) {
return state.trackingIdentifiersByEnabledElementUUID[uuid];
}
return { trackingUniqueIdentifiers: [] };
}
export default {
state,
getters: {
trackingUniqueIdentifiersForElement: getTrackingUniqueIdentifiersForElement,
},
setters: {
trackingUniqueIdentifiersForElement: setTrackingUniqueIdentifiersForElement,
activeTrackingUniqueIdentifierForElement: setActiveTrackingUniqueIdentifierForElement,
},
};
@@ -0,0 +1,32 @@
/**
* Get cornerstone tool alias.
*
* @param {string} toolName
* @returns tool alias
*/
export default function getToolAlias(toolName) {
let toolAlias = toolName;
switch (toolName) {
case 'Length':
toolAlias = 'SRLength';
break;
case 'Bidirectional':
toolAlias = 'SRBidirectional';
break;
case 'ArrowAnnotate':
toolAlias = 'SRArrowAnnotate';
break;
case 'EllipticalRoi':
toolAlias = 'SREllipticalRoi';
break;
case 'FreehandRoi':
toolAlias = 'SRFreehandRoi';
break;
case 'RectangleRoi':
toolAlias = 'SRRectangleRoi';
break;
}
return toolAlias;
}
+24
View File
@@ -3,6 +3,30 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [0.3.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.3.2...@ohif/extension-debugging@0.3.3) (2022-06-30)
**Note:** Version bump only for package @ohif/extension-debugging
## [0.3.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.3.1...@ohif/extension-debugging@0.3.2) (2022-03-10)
**Note:** Version bump only for package @ohif/extension-debugging
## [0.3.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.3.0...@ohif/extension-debugging@0.3.1) (2021-12-02)
**Note:** Version bump only for package @ohif/extension-debugging
# [0.3.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.2.2...@ohif/extension-debugging@0.3.0) (2021-09-23)
+3 -3
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-debugging",
"version": "0.3.0",
"version": "0.3.3",
"description": "OHIF extension for debugging.",
"author": "OHIF",
"license": "MIT",
@@ -28,12 +28,12 @@
},
"peerDependencies": {
"@ohif/core": "^2.6.0",
"dicom-parser": "^1.8.9"
"dicom-parser": "^1.8.11"
},
"dependencies": {
"@babel/runtime": "^7.5.5",
"detect-browser": "5.1.1",
"dicomweb-client": "^0.8.1",
"dicomweb-client": "^0.8.3",
"file-saver": "^2.0.2",
"jszip": "^3.2.2"
}
@@ -24,3 +24,21 @@
overflow: scroll;
max-height: 300px;
}
.debug-overflowText {
margin: 0 auto;
max-width: 300px;
overflow-wrap: break-word;
word-wrap: break-word;
hyphens: auto;
}
.debug-overflowText-border {
margin: 0 auto;
max-width: 300px;
border: solid 2px #ccc;
padding: 12px;
overflow-wrap: break-word;
word-wrap: break-word;
hyphens: auto;
}
+154 -2
View File
@@ -2,6 +2,8 @@ import React from 'react';
import { detect } from 'detect-browser';
import './DebugReportModal.css';
import { ToolbarButton } from '@ohif/ui';
import { utils } from '@ohif/core';
const { studyMetadataManager } = utils;
const DubugReportModal = ({
viewports,
@@ -70,7 +72,7 @@ const DubugReportModal = ({
body += '== Viewport Layout ==\n';
body += `Rows\t${numRows}\n`;
body += `Columns\t${numColumns}\n\n`;
body += '== Viewports ==\n';
body += '== SeriesInstanceUIDs ==\n';
Object.keys(viewportSpecificData).forEach(viewportIndex => {
const vsd = viewportSpecificData[viewportIndex];
@@ -83,6 +85,57 @@ const DubugReportModal = ({
body += `[${row},${column}]\t${vsd.SeriesInstanceUID}\n`;
});
body += '== ReferencedSEGSeriesInstanceUIDs ==\n';
Object.keys(viewportSpecificData).forEach(viewportIndex => {
const displaySet = viewportSpecificData[viewportIndex];
const [referencedDisplaySetsRef] = _getReferencedSeriesInstanceUIDsString(
displaySet,
'SEG'
);
const [row, column] = _viewportIndexToViewportPosition(
viewportIndex,
numColumns
);
body += `[${row},${column}]\t${referencedDisplaySetsRef}\n`;
});
body += '== ReferencedRTSTRUCTSeriesInstanceUIDs ==\n';
Object.keys(viewportSpecificData).forEach(viewportIndex => {
const displaySet = viewportSpecificData[viewportIndex];
const [referencedDisplaySetsRef] = _getReferencedSeriesInstanceUIDsString(
displaySet,
'RTSTRUCT'
);
const [row, column] = _viewportIndexToViewportPosition(
viewportIndex,
numColumns
);
body += `[${row},${column}]\t${referencedDisplaySetsRef}\n`;
});
body += '== ReferencedSRSeriesInstanceUIDs ==\n';
Object.keys(viewportSpecificData).forEach(viewportIndex => {
const displaySet = viewportSpecificData[viewportIndex];
const [referencedDisplaySetsRef] = _getReferencedSeriesInstanceUIDsString(
displaySet,
'SR'
);
const [row, column] = _viewportIndexToViewportPosition(
viewportIndex,
numColumns
);
body += `[${row},${column}]\t${referencedDisplaySetsRef}\n`;
});
return body;
};
@@ -171,7 +224,7 @@ const getCurrentStudyUrl = () => {
</tr>
<tr>
<td>URL</td>
<td>{window.location.href}</td>
<td className="debug-overflowText">{window.location.href}</td>
</tr>
</React.Fragment>
);
@@ -222,6 +275,18 @@ const getLayout = viewports => {
<th>SeriesInstanceUIDs</th>
</tr>
{getSeriesInstanceUIDsPerRow(viewports)}
<tr>
<th>ReferencedSEGSeriesInstanceUIDs</th>
</tr>
{getReferencedSeriesInstanceUIDsPerRow(viewports, 'SEG')}
<tr>
<th>ReferencedRTSTRUCTSeriesInstanceUIDs</th>
</tr>
{getReferencedSeriesInstanceUIDsPerRow(viewports, 'RTSTRUCT')}
<tr>
<th>ReferencedSRSeriesInstanceUIDs</th>
</tr>
{getReferencedSeriesInstanceUIDsPerRow(viewports, 'SR')}
</React.Fragment>
);
};
@@ -256,6 +321,93 @@ const getBrowserInfo = () => {
);
};
/**
* Returns DisplaySets that reference the target series, sorted by dateTime
*
* @param {string} StudyInstanceUID
* @param {string} SeriesInstanceUID
* @returns Array
*/
const _getReferencedDisplaysets = (
StudyInstanceUID,
SeriesInstanceUID,
Modality
) => {
/* Referenced DisplaySets */
const studyMetadata = studyMetadataManager.get(StudyInstanceUID);
const referencedDisplaysets = studyMetadata.getDerivedDatasets({
referencedSeriesInstanceUID: SeriesInstanceUID,
Modality,
});
/* Sort */
referencedDisplaysets.sort((a, b) => {
const aNumber = Number(`${a.SeriesDate}${a.SeriesTime}`);
const bNumber = Number(`${b.SeriesDate}${b.SeriesTime}`);
return bNumber - aNumber;
});
return referencedDisplaysets;
};
const _getReferencedSeriesInstanceUIDsString = (displaySet, Modality) => {
const referencedDisplaySets = _getReferencedDisplaysets(
displaySet.StudyInstanceUID,
displaySet.SeriesInstanceUID,
Modality
);
let referencedDisplaySetsRef = 'None';
const referencedDisplaySetsCount = referencedDisplaySets.length;
if (referencedDisplaySetsCount !== 0) {
referencedDisplaySetsRef = '';
for (let i = 0; i < referencedDisplaySetsCount - 1; i++) {
referencedDisplaySetsRef +=
referencedDisplaySets[i].SeriesInstanceUID + ', ';
}
referencedDisplaySetsRef +=
referencedDisplaySets[referencedDisplaySetsCount - 1].SeriesInstanceUID;
}
return [referencedDisplaySetsRef, referencedDisplaySetsCount];
};
const getReferencedSeriesInstanceUIDsPerRow = (viewports, Modality) => {
const { viewportSpecificData, numColumns } = viewports;
// NOTE viewportSpecificData is actually an object with numerical keys.
return Object.keys(viewportSpecificData).map(viewportIndex => {
const displaySet = viewportSpecificData[viewportIndex];
const [
referencedDisplaySetsRef,
referencedDisplaySetsCount,
] = _getReferencedSeriesInstanceUIDsString(displaySet, Modality);
const [row, column] = _viewportIndexToViewportPosition(
viewportIndex,
numColumns
);
if (referencedDisplaySetsCount > 1) {
return (
<tr>
<td>{`[${row},${column}]`}</td>
<td className="debug-overflowText-border">
{referencedDisplaySetsRef}
</td>
</tr>
);
} else {
return (
<tr>
<td>{`[${row},${column}]`}</td>
<td className="debug-overflowText">{referencedDisplaySetsRef}</td>
</tr>
);
}
});
};
const getSeriesInstanceUIDsPerRow = viewports => {
const { viewportSpecificData, numColumns } = viewports;
+72
View File
@@ -3,6 +3,78 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [1.3.22](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.21...@ohif/extension-dicom-html@1.3.22) (2022-06-30)
**Note:** Version bump only for package @ohif/extension-dicom-html
## [1.3.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.20...@ohif/extension-dicom-html@1.3.21) (2022-04-05)
**Note:** Version bump only for package @ohif/extension-dicom-html
## [1.3.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.19...@ohif/extension-dicom-html@1.3.20) (2022-03-25)
**Note:** Version bump only for package @ohif/extension-dicom-html
## [1.3.19](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.18...@ohif/extension-dicom-html@1.3.19) (2022-03-14)
**Note:** Version bump only for package @ohif/extension-dicom-html
## [1.3.18](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.17...@ohif/extension-dicom-html@1.3.18) (2022-02-03)
**Note:** Version bump only for package @ohif/extension-dicom-html
## [1.3.17](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.16...@ohif/extension-dicom-html@1.3.17) (2022-02-03)
**Note:** Version bump only for package @ohif/extension-dicom-html
## [1.3.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.15...@ohif/extension-dicom-html@1.3.16) (2022-02-02)
**Note:** Version bump only for package @ohif/extension-dicom-html
## [1.3.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.14...@ohif/extension-dicom-html@1.3.15) (2022-01-20)
**Note:** Version bump only for package @ohif/extension-dicom-html
## [1.3.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.13...@ohif/extension-dicom-html@1.3.14) (2021-12-02)
**Note:** Version bump only for package @ohif/extension-dicom-html
## [1.3.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.12...@ohif/extension-dicom-html@1.3.13) (2021-10-26)
**Note:** Version bump only for package @ohif/extension-dicom-html
+2 -2
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-dicom-html",
"version": "1.3.13",
"version": "1.3.22",
"description": "OHIF extension for rendering structured reports to HTML",
"author": "OHIF",
"license": "MIT",
@@ -29,7 +29,7 @@
},
"peerDependencies": {
"@ohif/core": "^0.50.0",
"dcmjs": "0.18.10",
"dcmjs": "0.19.9",
"prop-types": "^15.6.2",
"react": "^16.8.6",
"react-dom": "^16.8.6"
@@ -1,10 +1,11 @@
import { MODULE_TYPES, utils } from '@ohif/core';
import { MODULE_TYPES, utils, metadata } from '@ohif/core';
// TODO: Should probably use dcmjs for this
const SOP_CLASS_UIDS = {
BASIC_TEXT_SR: '1.2.840.10008.5.1.4.1.1.88.11',
ENHANCED_SR: '1.2.840.10008.5.1.4.1.1.88.22',
COMPREHENSIVE_SR: '1.2.840.10008.5.1.4.1.1.88.33',
COMPREHENSIVE_3D_SR: '1.2.840.10008.5.1.4.1.1.88.34',
PROCEDURE_LOG_STORAGE: '1.2.840.10008.5.1.4.1.1.88.40',
MAMMOGRAPHY_CAD_SR: '1.2.840.10008.5.1.4.1.1.88.50',
CHEST_CAD_SR: '1.2.840.10008.5.1.4.1.1.88.65',
@@ -31,7 +32,7 @@ const OHIFDicomHtmlSopClassHandler = {
SeriesTime,
} = metadata;
return {
const srDisplaySet = {
plugin: 'html',
Modality: 'SR',
displaySetInstanceUID: utils.guid(),
@@ -46,7 +47,17 @@ const OHIFDicomHtmlSopClassHandler = {
SeriesTime,
SeriesNumber,
authorizationHeaders,
sopClassUids: sopClassUIDs,
images: series._instances,
isDerived: true,
referencedDisplaySets: [],
};
srDisplaySet.getSourceDisplaySet = function() {
return srDisplaySet.referencedDisplaySets;
};
return srDisplaySet;
},
};
+16
View File
@@ -3,6 +3,22 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [1.1.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.1.1...@ohif/extension-dicom-pdf@1.1.2) (2022-01-29)
**Note:** Version bump only for package @ohif/extension-dicom-pdf
## [1.1.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.1.0...@ohif/extension-dicom-pdf@1.1.1) (2021-12-02)
**Note:** Version bump only for package @ohif/extension-dicom-pdf
# [1.1.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.0.6...@ohif/extension-dicom-pdf@1.1.0) (2021-09-23)
+2 -2
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-dicom-pdf",
"version": "1.1.0",
"version": "1.1.2",
"description": "OHIF extension for Dicom PDF",
"author": "OHIF",
"license": "MIT",
@@ -29,7 +29,7 @@
},
"peerDependencies": {
"@ohif/core": "^0.50.0",
"dicom-parser": "^1.8.9",
"dicom-parser": "^1.8.11",
"prop-types": "^15.6.2",
"react": "^16.8.6",
"react-dom": "^16.8.6"
+3 -1
View File
@@ -33,6 +33,7 @@ class DicomPDFViewport extends Component {
static propTypes = {
byteArray: TypedArrayProp.uint8,
rawPdf: PropTypes.bool,
useNative: PropTypes.bool,
viewportData: PropTypes.object,
activeViewportIndex: PropTypes.number,
@@ -45,7 +46,8 @@ class DicomPDFViewport extends Component {
};
async componentDidMount() {
const dataSet = this.parseByteArray(this.props.byteArray);
const { rawPdf } = this.props
const dataSet = !rawPdf && this.parseByteArray(this.props.byteArray);
const fileURL = this.getPDFFileUrl(dataSet, this.props.byteArray);
this.setState(state => ({ ...state, fileURL }));
@@ -3,6 +3,7 @@ import PropTypes from 'prop-types';
import OHIF from '@ohif/core';
import OHIFComponentPlugin from './OHIFComponentPlugin.js';
import DicomPDFViewport from './DicomPDFViewport';
import { str2ab } from '@ohif/core';
const { DicomLoaderService } = OHIF.utils;
@@ -18,6 +19,7 @@ class OHIFDicomPDFViewport extends Component {
state = {
byteArray: null,
rawPdf: false,
error: null,
};
@@ -34,6 +36,15 @@ class OHIFDicomPDFViewport extends Component {
componentDidMount() {
const { displaySet, studies } = this.props.viewportData;
if (displaySet.metadata && displaySet.metadata.EncapsulatedDocument) {
const { InlineBinary, BulkDataURI } = displaySet.metadata.EncapsulatedDocument;
if (InlineBinary) {
const inlineBinaryData = atob(InlineBinary);
const byteArray = str2ab(inlineBinaryData);
this.setState({ byteArray, rawPdf: true });
return;
}
}
DicomLoaderService.findDicomDataPromise(displaySet, studies).then(
data => this.setState({ byteArray: new Uint8Array(data) }),
error => {
@@ -49,15 +60,16 @@ class OHIFDicomPDFViewport extends Component {
viewportIndex,
activeViewportIndex,
} = this.props;
const { byteArray, error } = this.state;
const { byteArray, error, rawPdf } = this.state;
const { id, init, destroy } = OHIFDicomPDFViewport;
const pluginProps = { id, init, destroy };
return (
<OHIFComponentPlugin {...pluginProps}>
{byteArray && (
{(byteArray) && (
<DicomPDFViewport
byteArray={byteArray}
rawPdf={rawPdf}
setViewportActive={setViewportActive}
viewportIndex={viewportIndex}
activeViewportIndex={activeViewportIndex}
+72
View File
@@ -3,6 +3,78 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [0.7.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.11...@ohif/extension-dicom-rt@0.7.12) (2022-08-31)
**Note:** Version bump only for package @ohif/extension-dicom-rt
## [0.7.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.10...@ohif/extension-dicom-rt@0.7.11) (2022-04-05)
**Note:** Version bump only for package @ohif/extension-dicom-rt
## [0.7.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.9...@ohif/extension-dicom-rt@0.7.10) (2022-03-25)
**Note:** Version bump only for package @ohif/extension-dicom-rt
## [0.7.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.8...@ohif/extension-dicom-rt@0.7.9) (2022-03-14)
**Note:** Version bump only for package @ohif/extension-dicom-rt
## [0.7.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.7...@ohif/extension-dicom-rt@0.7.8) (2022-02-03)
**Note:** Version bump only for package @ohif/extension-dicom-rt
## [0.7.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.6...@ohif/extension-dicom-rt@0.7.7) (2022-02-02)
**Note:** Version bump only for package @ohif/extension-dicom-rt
## [0.7.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.5...@ohif/extension-dicom-rt@0.7.6) (2022-01-20)
**Note:** Version bump only for package @ohif/extension-dicom-rt
## [0.7.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.4...@ohif/extension-dicom-rt@0.7.5) (2022-01-19)
**Note:** Version bump only for package @ohif/extension-dicom-rt
## [0.7.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.3...@ohif/extension-dicom-rt@0.7.4) (2021-12-02)
**Note:** Version bump only for package @ohif/extension-dicom-rt
## [0.7.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.2...@ohif/extension-dicom-rt@0.7.3) (2021-10-26)
**Note:** Version bump only for package @ohif/extension-dicom-rt
+4 -4
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-dicom-rt",
"version": "0.7.3",
"version": "0.7.12",
"description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
"author": "OHIF",
"license": "MIT",
@@ -29,9 +29,9 @@
},
"peerDependencies": {
"@ohif/core": "^0.50.0",
"cornerstone-core": "^2.5.0",
"cornerstone-tools": "^6.0.0",
"dcmjs": "0.18.10",
"cornerstone-core": "^2.6.1",
"cornerstone-tools": "^6.0.6",
"dcmjs": "0.19.9",
"gl-matrix": "^3.3.0",
"prop-types": "^15.6.2",
"react": "^16.8.6",
@@ -1,4 +1,4 @@
import React, { useState, useEffect, useCallback } from 'react';
import React, { useState, useEffect } from 'react';
import PropTypes from 'prop-types';
import cornerstoneTools from 'cornerstone-tools';
import cornerstone from 'cornerstone-core';
@@ -81,13 +81,10 @@ const RTPanel = ({
useEffect(() => {
updateStructureSets();
document.addEventListener('extensiondicomrtrtloaded', updateStructureSets);
document.addEventListener('rt-panel-tab-updated', updateStructureSets);
return () => {
document.removeEventListener(
'extensiondicomrtrtloaded',
updateStructureSets
);
document.removeEventListener('rt-panel-tab-updated', updateStructureSets);
};
}, []);
@@ -3,6 +3,78 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [0.7.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.11...@ohif/extension-dicom-segmentation@0.7.12) (2022-08-31)
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
## [0.7.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.10...@ohif/extension-dicom-segmentation@0.7.11) (2022-04-05)
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
## [0.7.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.9...@ohif/extension-dicom-segmentation@0.7.10) (2022-03-25)
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
## [0.7.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.8...@ohif/extension-dicom-segmentation@0.7.9) (2022-03-14)
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
## [0.7.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.7...@ohif/extension-dicom-segmentation@0.7.8) (2022-02-03)
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
## [0.7.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.6...@ohif/extension-dicom-segmentation@0.7.7) (2022-02-02)
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
## [0.7.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.5...@ohif/extension-dicom-segmentation@0.7.6) (2022-01-20)
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
## [0.7.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.4...@ohif/extension-dicom-segmentation@0.7.5) (2021-12-02)
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
## [0.7.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.3...@ohif/extension-dicom-segmentation@0.7.4) (2021-10-27)
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
## [0.7.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.2...@ohif/extension-dicom-segmentation@0.7.3) (2021-10-26)
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+4 -4
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-dicom-segmentation",
"version": "0.7.3",
"version": "0.7.12",
"description": "OHIF extension for viewing segmentations in the 2D MPR view",
"author": "OHIF",
"license": "MIT",
@@ -29,9 +29,9 @@
},
"peerDependencies": {
"@ohif/core": "^0.50.0",
"cornerstone-core": "^2.5.0",
"cornerstone-tools": "^6.0.0",
"dcmjs": "0.18.10",
"cornerstone-core": "^2.6.1",
"cornerstone-tools": "^6.0.6",
"dcmjs": "0.19.9",
"prop-types": "^15.6.2",
"react": "^16.8.6",
"react-dom": "^16.8.6"
@@ -24,6 +24,7 @@ const SegmentItem = ({
onClick,
itemClass,
color,
labelmap3D,
visible,
onVisibilityChange,
}) => {
@@ -39,7 +40,7 @@ const SegmentItem = ({
event.stopPropagation();
const newVisibility = !isVisible;
setIsVisible(newVisibility);
onVisibilityChange(newVisibility, index);
onVisibilityChange(newVisibility, index, labelmap3D);
};
return (
@@ -1,4 +1,4 @@
import React, { useState, useEffect } from 'react';
import React, { useState, useEffect, useCallback } from 'react';
import PropTypes from 'prop-types';
import cornerstoneTools from 'cornerstone-tools';
import cornerstone from 'cornerstone-core';
@@ -224,33 +224,15 @@ const SegmentationPanel = ({
)
);
};
}, [
activeIndex,
updateSegmentationComboBox,
viewports,
]);
}, [activeIndex, viewports]);
const updateSegmentationComboBox = e => {
const index = e.detail.activatedLabelmapIndex;
if (index !== -1) {
setState(state => ({ ...state, selectedSegmentation: index }));
} else {
cleanSegmentationComboBox();
}
};
const cleanSegmentationComboBox = () => {
setState(state => ({
...state,
segmentsHidden: [],
segmentNumbers: [],
labelMapList: [],
segmentList: [],
isDisabled: true,
selectedSegmentation: -1,
}));
};
const refreshSegmentations = () => {
const activeViewport = getActiveViewport();
const isDisabled = !activeViewport || !activeViewport.StudyInstanceUID;
@@ -431,23 +413,43 @@ const SegmentationPanel = ({
return enabledElements[activeIndex].element;
};
const onSegmentVisibilityChangeHandler = (isVisible, segmentNumber) => {
/** Get all labelmaps with this segmentNumber (overlapping segments) */
const { labelmaps3D } = getBrushStackState();
const possibleLabelMaps3D = labelmaps3D.filter(({ labelmaps2D }) => {
return labelmaps2D.some(({ segmentsOnLabelmap }) =>
segmentsOnLabelmap.includes(segmentNumber)
);
});
const onSegmentVisibilityChangeHandler = (
isVisible,
segmentNumber,
labelmap3D
) => {
let segmentsHidden = [];
possibleLabelMaps3D.forEach(labelmap3D => {
labelmap3D.segmentsHidden[segmentNumber] = !isVisible;
if (labelmap3D.metadata.hasOverlapping) {
/** Get all labelmaps with this segmentNumber and that
* are from the same series (overlapping segments) */
const { labelmaps3D } = getBrushStackState();
segmentsHidden = [
...new Set([...segmentsHidden, ...labelmap3D.segmentsHidden]),
];
});
const sameSeriesLabelMaps3D = labelmaps3D.filter(({ metadata }) => {
return (
labelmap3D.metadata.segmentationSeriesInstanceUID ===
metadata.segmentationSeriesInstanceUID
);
});
const possibleLabelMaps3D = sameSeriesLabelMaps3D.filter(
({ labelmaps2D }) => {
return labelmaps2D.some(({ segmentsOnLabelmap }) =>
segmentsOnLabelmap.includes(segmentNumber)
);
}
);
possibleLabelMaps3D.forEach(labelmap3D => {
labelmap3D.segmentsHidden[segmentNumber] = !isVisible;
segmentsHidden = [
...new Set([...segmentsHidden, ...labelmap3D.segmentsHidden]),
];
});
} else {
labelmap3D.segmentsHidden[segmentNumber] = !isVisible;
segmentsHidden = [...labelmap3D.segmentsHidden];
}
setState(state => ({ ...state, segmentsHidden }));
@@ -514,6 +516,7 @@ const SegmentationPanel = ({
label={segmentLabel}
index={segmentNumber}
color={color}
labelmap3D={labelmap3D}
visible={!labelmap3D.segmentsHidden[segmentIndex]}
onVisibilityChange={onSegmentVisibilityChangeHandler}
/>
@@ -688,7 +691,7 @@ const SegmentationPanel = ({
count={state.segmentList.length}
isVisible={
state.segmentsHidden.filter(isHidden => isHidden === true).length <
state.segmentNumbers.length
state.segmentNumbers.length && state.segmentNumbers.length > 0
}
onVisibilityChange={onVisibilityChangeHandler}
>
@@ -64,8 +64,17 @@ export default function getSopClassHandlerModule({ servicesManager }) {
metadata,
};
segDisplaySet.getSourceDisplaySet = function(studies, activateLabelMap = true, onDisplaySetLoadFailureHandler) {
return getSourceDisplaySet(studies, segDisplaySet, activateLabelMap, onDisplaySetLoadFailureHandler);
segDisplaySet.getSourceDisplaySet = function(
studies,
activateLabelMap = true,
onDisplaySetLoadFailureHandler
) {
return getSourceDisplaySet(
studies,
segDisplaySet,
activateLabelMap,
onDisplaySetLoadFailureHandler
);
};
segDisplaySet.load = async function(referencedDisplaySet, studies) {
@@ -98,6 +107,9 @@ export default function getSopClassHandlerModule({ servicesManager }) {
if (labelmapBufferArray.length > 1) {
let labelmapIndexes = [];
for (let i = 0; i < labelmapBufferArray.length; ++i) {
segMetadata.segmentationSeriesInstanceUID =
segDisplaySet.SeriesInstanceUID;
segMetadata.hasOverlapping = true;
labelmapIndexes.push(
await loadSegmentation(
imageIds,
@@ -118,6 +130,9 @@ export default function getSopClassHandlerModule({ servicesManager }) {
labelmapIndex = labelmapIndexes[0];
console.warn('Overlapping segments!');
} else {
segMetadata.segmentationSeriesInstanceUID =
segDisplaySet.SeriesInstanceUID;
segMetadata.hasOverlapping = false;
labelmapIndex = await loadSegmentation(
imageIds,
segDisplaySet,
@@ -135,10 +150,16 @@ export default function getSopClassHandlerModule({ servicesManager }) {
}
function _parseSeg(arrayBuffer, imageIds) {
const skipOverlapping = false;
const tolerance = 1e-2;
const cornerstoneToolsVersion = 4;
return dcmjs.adapters.Cornerstone.Segmentation.generateToolState(
imageIds,
arrayBuffer,
cornerstone.metaData
cornerstone.metaData,
skipOverlapping,
tolerance,
cornerstoneToolsVersion
);
}
@@ -47,14 +47,23 @@ export default async function setActiveLabelmap(
return labelmapIndex;
}
if (!displaySet.isLoaded) {
if (!displaySet.isLoaded && !displaySet.loadError) {
try {
await displaySet.load(referencedDisplaySet, studies);
} catch (error) {
displaySet.isLoaded = false;
displaySet.loadError = true;
displaySet.segLoadErrorMessagge = error.message;
onDisplaySetLoadFailure(error);
/*
* TODO: Improve the way we notify parts of the app
* that depends on derived display sets to be loaded.
* (Implement pubsub for better tracking of derived display sets)
*/
const event = new CustomEvent('segmentationLoadingError');
document.dispatchEvent(event);
return -1;
}
}
+80
View File
@@ -3,6 +3,86 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [0.2.23](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.22...@ohif/extension-dicom-tag-browser@0.2.23) (2022-04-06)
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
## [0.2.22](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.21...@ohif/extension-dicom-tag-browser@0.2.22) (2022-04-05)
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
## [0.2.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.20...@ohif/extension-dicom-tag-browser@0.2.21) (2022-03-25)
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
## [0.2.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.19...@ohif/extension-dicom-tag-browser@0.2.20) (2022-03-14)
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
## [0.2.19](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.18...@ohif/extension-dicom-tag-browser@0.2.19) (2022-02-03)
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
## [0.2.18](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.17...@ohif/extension-dicom-tag-browser@0.2.18) (2022-02-02)
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
## [0.2.17](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.16...@ohif/extension-dicom-tag-browser@0.2.17) (2022-01-20)
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
## [0.2.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.15...@ohif/extension-dicom-tag-browser@0.2.16) (2021-12-10)
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
## [0.2.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.14...@ohif/extension-dicom-tag-browser@0.2.15) (2021-12-02)
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
## [0.2.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.13...@ohif/extension-dicom-tag-browser@0.2.14) (2021-11-30)
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
## [0.2.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.12...@ohif/extension-dicom-tag-browser@0.2.13) (2021-10-26)
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
+3 -3
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-dicom-tag-browser",
"version": "0.2.13",
"version": "0.2.23",
"description": "OHIF extension for checking DICOM headers.",
"author": "OHIF",
"license": "MIT",
@@ -28,12 +28,12 @@
},
"peerDependencies": {
"@ohif/core": "^2.6.0",
"dcmjs": "0.18.10",
"dcmjs": "0.19.9",
"react": "^16.8.6"
},
"dependencies": {
"@babel/runtime": "^7.5.5",
"dicomweb-client": "^0.8.1",
"dicomweb-client": "^0.8.3",
"moment": "2.24.0",
"react-select": "^3.0.8"
}
@@ -18,7 +18,7 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
activeDisplaySetInstanceUID,
setActiveDisplaySetInstanceUID,
] = useState(displaySetInstanceUID);
const [activeInstance, setActiveInstance] = useState(0);
const [activeInstance, setActiveInstance] = useState(1);
const [tags, setTags] = useState([]);
const [meta, setMeta] = useState('');
const [instanceList, setInstanceList] = useState([]);
@@ -51,20 +51,21 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
description: displayDate,
onClick: () => {
setActiveDisplaySetInstanceUID(displaySetInstanceUID);
setActiveInstance(0);
setActiveInstance(1);
},
};
});
let metadata;
const isImageStack = activeDisplaySet instanceof ImageSet;
const isImageStack =
activeDisplaySet instanceof ImageSet &&
activeDisplaySet.isSOPClassUIDSupported === true;
let selectedInstanceValue;
let instanceList;
if (isImageStack) {
const { images } = activeDisplaySet;
const image = images[activeInstance];
const image = images[activeInstance - 1];
instanceList = images.map((image, index) => {
const metadata = image.getData().metadata;
@@ -91,7 +92,7 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
setInstanceList(instanceList);
setDisplaySetList(newDisplaySetList);
setIsImageStack(isImageStack);
}, [activeDisplaySetInstanceUID, activeInstance]);
}, [activeDisplaySetInstanceUID, activeInstance, displaySets]);
const selectedDisplaySetValue = displaySetList.find(
ds => ds.value === activeDisplaySetInstanceUID
@@ -106,7 +107,7 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
showValue
step={1}
min={1}
max={instanceList.length - 1}
max={instanceList.length}
value={activeInstance}
valueRenderer={value => <p>Instance Number: {value}</p>}
onChange={({ target }) => {
+8
View File
@@ -3,6 +3,14 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [0.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-lesion-tracker@0.2.1...@ohif/extension-lesion-tracker@0.2.2) (2022-06-29)
**Note:** Version bump only for package @ohif/extension-lesion-tracker
## [0.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-lesion-tracker@0.2.0...@ohif/extension-lesion-tracker@0.2.1) (2020-09-03)
**Note:** Version bump only for package @ohif/extension-lesion-tracker
+1 -1
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-lesion-tracker",
"version": "0.2.1",
"version": "0.2.2",
"description": "OHIF extension for Lesion Tracker",
"author": "OHIF",
"license": "MIT",
@@ -76,13 +76,13 @@ const additionalFindings = [
const currentCollections = [
{
selectorAction: () => { },
selectorAction: () => {},
maxMeasurements: 3,
groupName: 'Measurements',
measurements: measurements,
},
{
selectorAction: () => { },
selectorAction: () => {},
groupName: 'Additional Findings',
measurements: additionalFindings,
},
@@ -90,13 +90,13 @@ const currentCollections = [
const comparisonColletions = [
{
selectorAction: () => { },
selectorAction: () => {},
maxMeasurements: 3,
groupName: 'Measurements',
measurements: measurements,
},
{
selectorAction: () => { },
selectorAction: () => {},
groupName: 'Additional Findings',
measurements: additionalFindings,
},
@@ -128,7 +128,7 @@ const comparisonTimepoints = [
{
key: 'Comparison',
date: '15-Jun-18',
}
},
];
const MeasurementComparisonTable = () => {
@@ -138,8 +138,8 @@ const MeasurementComparisonTable = () => {
timepoints={comparisonTimepoints}
overallWarnings={overallWarnings}
measurementCollection={comparisonCollections}
onRelabelClick={() => { }}
onEditDescriptionClick={() => { }}
onRelabelClick={() => {}}
onEditDescriptionClick={() => {}}
/>
<div className="generate-report">
<button className="btn btn-primary">Generate Report</button>
+192
View File
@@ -3,6 +3,198 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [1.12.29](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.28...@ohif/extension-vtk@1.12.29) (2022-08-31)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.28](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.27...@ohif/extension-vtk@1.12.28) (2022-08-24)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.27](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.26...@ohif/extension-vtk@1.12.27) (2022-06-30)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.26](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.25...@ohif/extension-vtk@1.12.26) (2022-06-29)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.25](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.24...@ohif/extension-vtk@1.12.25) (2022-06-28)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.24](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.23...@ohif/extension-vtk@1.12.24) (2022-06-14)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.23](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.22...@ohif/extension-vtk@1.12.23) (2022-04-22)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.22](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.21...@ohif/extension-vtk@1.12.22) (2022-04-06)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.20...@ohif/extension-vtk@1.12.21) (2022-04-05)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.19...@ohif/extension-vtk@1.12.20) (2022-03-25)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.19](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.18...@ohif/extension-vtk@1.12.19) (2022-03-14)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.18](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.17...@ohif/extension-vtk@1.12.18) (2022-03-14)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.17](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.16...@ohif/extension-vtk@1.12.17) (2022-03-14)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.15...@ohif/extension-vtk@1.12.16) (2022-02-15)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.14...@ohif/extension-vtk@1.12.15) (2022-02-03)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.13...@ohif/extension-vtk@1.12.14) (2022-02-03)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.12...@ohif/extension-vtk@1.12.13) (2022-02-02)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.11...@ohif/extension-vtk@1.12.12) (2022-01-29)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.10...@ohif/extension-vtk@1.12.11) (2022-01-20)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.9...@ohif/extension-vtk@1.12.10) (2022-01-13)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.8...@ohif/extension-vtk@1.12.9) (2021-12-23)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.7...@ohif/extension-vtk@1.12.8) (2021-12-23)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.6...@ohif/extension-vtk@1.12.7) (2021-12-02)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.5...@ohif/extension-vtk@1.12.6) (2021-11-30)
**Note:** Version bump only for package @ohif/extension-vtk
## [1.12.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.4...@ohif/extension-vtk@1.12.5) (2021-10-26)
**Note:** Version bump only for package @ohif/extension-vtk
+11 -11
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-vtk",
"version": "1.12.5",
"version": "1.12.29",
"description": "OHIF extension for VTK.js",
"author": "OHIF",
"license": "MIT",
@@ -32,11 +32,11 @@
"@ohif/core": "^0.50.0",
"@ohif/i18n": "^0.50.0",
"@ohif/ui": "^0.50.0",
"cornerstone-core": "^2.5.0",
"cornerstone-tools": "^6.0.0",
"cornerstone-wado-image-loader": "^4.0.3",
"dcmjs": "0.18.10",
"dicom-parser": "^1.8.9",
"cornerstone-core": "^2.6.1",
"cornerstone-tools": "^6.0.6",
"cornerstone-wado-image-loader": "^4.1.0",
"dcmjs": "0.19.9",
"dicom-parser": "^1.8.11",
"i18next": "^17.0.3",
"i18next-browser-languagedetector": "^3.0.1",
"prop-types": "^15.7.2",
@@ -53,11 +53,11 @@
"react-vtkjs-viewport": "^0.14.4"
},
"devDependencies": {
"@ohif/core": "^2.16.1",
"@ohif/ui": "^1.10.4",
"cornerstone-tools": "^6.0.0",
"cornerstone-wado-image-loader": "^4.0.3",
"dicom-parser": "^1.8.9",
"@ohif/core": "^2.16.24",
"@ohif/ui": "^1.10.10",
"cornerstone-tools": "^6.0.6",
"cornerstone-wado-image-loader": "^4.1.0",
"dicom-parser": "^1.8.11",
"gh-pages": "^2.0.1",
"i18next": "^17.0.3",
"i18next-browser-languagedetector": "^3.0.1",
+23
View File
@@ -0,0 +1,23 @@
0 silly argv {
0 silly argv _: [ 'run' ],
0 silly argv stream: true,
0 silly argv lernaVersion: '3.18.3',
0 silly argv '$0': 'node_modules/.bin/lerna',
0 silly argv script: 'dev:viewer'
0 silly argv }
1 notice cli v3.18.3
2 verbose rootPath /home/davide/Development/OIHF/Viewers
3 info versioning independent
4 info Executing command in 1 package: "yarn run dev:viewer"
5 silly npmRunScript.stream [ 'dev:viewer', [], '@ohif/viewer' ]
6 silly getExecOpts /home/davide/Development/OIHF/Viewers/platform/viewer undefined
7 error MaxBufferError: stderr maxBuffer exceeded
7 error at PassThrough.<anonymous> (/home/davide/Development/OIHF/Viewers/node_modules/get-stream/index.js:41:19)
7 error at PassThrough.emit (events.js:412:35)
7 error at addChunk (internal/streams/readable.js:290:12)
7 error at readableAddChunk (internal/streams/readable.js:261:11)
7 error at PassThrough.Readable.push (internal/streams/readable.js:204:10)
7 error at PassThrough.Transform.push (internal/streams/transform.js:166:32)
7 error at PassThrough.afterTransform (internal/streams/transform.js:101:10)
7 error at PassThrough._transform (internal/streams/passthrough.js:46:3)
7 error at PassThrough.Transform._read (internal/streams/transform.js:205:10)
+5 -2
View File
@@ -56,6 +56,7 @@
"@babel/preset-env": "^7.5.0",
"@babel/preset-react": "^7.0.0",
"@percy/cypress": "^2.2.0",
"@webpack-cli/serve": "^1.6.1",
"babel-eslint": "9.x",
"babel-loader": "^8.0.6",
"babel-plugin-inline-react-svg": "1.1.0",
@@ -98,14 +99,15 @@
"shader-loader": "^1.3.1",
"start-server-and-test": "^1.10.0",
"style-loader": "^1.0.0",
"styled-components": "^5.3.5",
"stylelint": "^10.1.0",
"stylelint-config-recommended": "^2.2.0",
"stylus": "^0.54.5",
"stylus-loader": "^3.0.2",
"terser-webpack-plugin": "^2.1.0",
"webpack": "^4.35.2",
"webpack-cli": "^3.3.5",
"webpack-dev-server": "^3.7.2",
"webpack-cli": "^4.9.2",
"webpack-dev-server": "^4.7.3",
"webpack-hot-middleware": "^2.25.0",
"webpack-merge": "^4.2.1",
"workbox-webpack-plugin": "^5.0.0-beta.1",
@@ -123,6 +125,7 @@
]
},
"resolutions": {
"**/node-gyp": "8.4.1",
"**/@babel/runtime": "7.5.5"
}
}
+196
View File
@@ -3,6 +3,202 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [2.16.24](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.23...@ohif/core@2.16.24) (2022-08-31)
**Note:** Version bump only for package @ohif/core
## [2.16.23](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.22...@ohif/core@2.16.23) (2022-08-24)
**Note:** Version bump only for package @ohif/core
## [2.16.22](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.21...@ohif/core@2.16.22) (2022-06-30)
**Note:** Version bump only for package @ohif/core
## [2.16.21](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.20...@ohif/core@2.16.21) (2022-06-29)
**Note:** Version bump only for package @ohif/core
## [2.16.20](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.19...@ohif/core@2.16.20) (2022-06-28)
### Bug Fixes
* Re IDC2797, fix double parsing of SR qualitative annotations ([#2830](https://github.com/OHIF/Viewers/issues/2830)) ([9f813e0](https://github.com/OHIF/Viewers/commit/9f813e0ea08f0aada8efab9ef6228ad90dd1758d))
## [2.16.19](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.18...@ohif/core@2.16.19) (2022-06-14)
**Note:** Version bump only for package @ohif/core
## [2.16.18](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.17...@ohif/core@2.16.18) (2022-04-22)
**Note:** Version bump only for package @ohif/core
## [2.16.17](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.16...@ohif/core@2.16.17) (2022-04-06)
**Note:** Version bump only for package @ohif/core
## [2.16.16](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.15...@ohif/core@2.16.16) (2022-04-05)
**Note:** Version bump only for package @ohif/core
## [2.16.15](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.14...@ohif/core@2.16.15) (2022-03-25)
**Note:** Version bump only for package @ohif/core
## [2.16.14](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.13...@ohif/core@2.16.14) (2022-03-14)
**Note:** Version bump only for package @ohif/core
## [2.16.13](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.12...@ohif/core@2.16.13) (2022-03-14)
### Bug Fixes
* Update fetchPaletteColorLookupTableData: LUT Entries shall be 0 if the table entries value is 2^16 ([#2395](https://github.com/OHIF/Viewers/issues/2395)) ([0ba796c](https://github.com/OHIF/Viewers/commit/0ba796c73c5254f1bc5ac72c58fd06abf19d7102))
## [2.16.12](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.11...@ohif/core@2.16.12) (2022-02-15)
**Note:** Version bump only for package @ohif/core
## [2.16.11](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.10...@ohif/core@2.16.11) (2022-02-03)
**Note:** Version bump only for package @ohif/core
## [2.16.10](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.9...@ohif/core@2.16.10) (2022-02-03)
**Note:** Version bump only for package @ohif/core
## [2.16.9](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.8...@ohif/core@2.16.9) (2022-02-02)
**Note:** Version bump only for package @ohif/core
## [2.16.8](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.7...@ohif/core@2.16.8) (2022-01-29)
**Note:** Version bump only for package @ohif/core
## [2.16.7](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.6...@ohif/core@2.16.7) (2022-01-20)
**Note:** Version bump only for package @ohif/core
## [2.16.6](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.5...@ohif/core@2.16.6) (2022-01-13)
**Note:** Version bump only for package @ohif/core
## [2.16.5](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.4...@ohif/core@2.16.5) (2021-12-23)
### Bug Fixes
* DICOMFileLoadingListener typo in method name ([#2647](https://github.com/OHIF/Viewers/issues/2647)) ([761d54f](https://github.com/OHIF/Viewers/commit/761d54fbbfb376c20ee15794ef7bb7111f64a06f))
## [2.16.4](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.3...@ohif/core@2.16.4) (2021-12-23)
### Bug Fixes
* SeriesTime and SeriesDate are only set for the first series and undefined for the remaining ones ([#2476](https://github.com/OHIF/Viewers/issues/2476)) ([6a401c9](https://github.com/OHIF/Viewers/commit/6a401c9e5204cb4f7af6aa33190ad5a8d0879de6))
## [2.16.3](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.2...@ohif/core@2.16.3) (2021-12-02)
**Note:** Version bump only for package @ohif/core
## [2.16.2](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.1...@ohif/core@2.16.2) (2021-11-30)
**Note:** Version bump only for package @ohif/core
## [2.16.1](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.0...@ohif/core@2.16.1) (2021-10-26)
**Note:** Version bump only for package @ohif/core
+9 -8
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/core",
"version": "2.16.1",
"version": "2.16.24",
"description": "Generic business logic for web-based medical imaging applications",
"author": "OHIF Core Team",
"license": "MIT",
@@ -31,20 +31,21 @@
"test:unit:ci": "jest --ci --runInBand --collectCoverage"
},
"peerDependencies": {
"cornerstone-core": "^2.5.0",
"cornerstone-tools": "^6.0.0",
"cornerstone-wado-image-loader": "^4.0.3",
"dicom-parser": "^1.8.9"
"cornerstone-core": "^2.6.1",
"cornerstone-tools": "^6.0.6",
"cornerstone-wado-image-loader": "^4.1.0",
"dicom-parser": "^1.8.11"
},
"dependencies": {
"@babel/runtime": "^7.5.5",
"ajv": "^6.10.0",
"dcmjs": "0.18.10",
"dicomweb-client": "^0.8.1",
"immer": "6.0.2",
"dcmjs": "0.19.9",
"dicomweb-client": "^0.8.3",
"immer": "9.0.12",
"isomorphic-base64": "^1.0.2",
"lodash.clonedeep": "^4.5.0",
"lodash.merge": "^4.6.1",
"mathjs": "^10.1.0",
"mousetrap": "^1.6.3",
"retry": "^0.12.0",
"validate.js": "^0.12.0"
@@ -0,0 +1,9 @@
export default {
TEXT: 'TEXT',
POINT: 'POINT',
MULTIPOINT: 'MULTIPOINT',
POLYLINE: 'POLYLINE',
CIRCLE: 'CIRCLE',
ELLIPSE: 'ELLIPSE',
POLYGON: 'POLYGON',
};
@@ -0,0 +1,5 @@
const TOOL_NAMES = {
DICOM_SR_DISPLAY_TOOL: 'DICOMSRDisplayTool',
};
export default TOOL_NAMES;
@@ -0,0 +1,29 @@
export const CodeNameCodeSequenceValues = {
ImagingMeasurementReport: '126000',
ImageLibrary: '111028',
ImagingMeasurements: '126010',
MeasurementGroup: '125007',
ImageLibraryGroup: '126200',
TrackingUniqueIdentifier: '112040',
TrackingIdentifier: '112039',
Finding: '121071',
FindingSite: 'G-C0E3', // SRT
CornerstoneFreeText: 'CORNERSTONEFREETEXT', // CST4
Score: '246262008',
};
export const RELATIONSHIP_TYPE = {
INFERRED_FROM: 'INFERRED FROM',
SELECTED_FROM: 'SELECTED FROM',
};
export const CodingSchemeDesignators = {
SRT: 'SRT',
cornerstoneTools4: 'CST4',
};
export default {
CodeNameCodeSequenceValues,
RELATIONSHIP_TYPE,
CodingSchemeDesignators,
};
@@ -0,0 +1,195 @@
import { ImageSet } from '../../classes';
import getMeasurements from './utils/getMeasurements';
import getReferencedImagesList from './utils/getReferencedImagesList';
import isRehydratable from './utils/isRehydratable';
import addMeasurement from './utils/addMeasurement';
const parseSCOORD3D = ({ servicesManager, displaySets }) => {
const { MeasurementService } = servicesManager.services;
const srDisplaySets = displaySets.filter(ds => ds.Modality === 'SR');
const imageDisplaySets = displaySets.filter(
ds =>
ds.Modality !== 'SR' &&
ds.Modality !== 'SEG' &&
ds.Modality !== 'RTSTRUCT' &&
ds.Modality !== 'RTDOSE'
);
imageDisplaySets.forEach(imageDisplaySet => {
imageDisplaySet.SRLabels = [];
});
srDisplaySets.forEach(srDisplaySet => {
const firstInstance = srDisplaySet.metadata;
if (!firstInstance) {
return;
}
const { ContentSequence } = firstInstance;
srDisplaySet.referencedImages = getReferencedImagesList(ContentSequence);
srDisplaySet.measurements = getMeasurements(ContentSequence);
const mappings = MeasurementService.getSourceMappings(
'CornerstoneTools',
'4'
);
srDisplaySet.isHydrated = false;
srDisplaySet.isRehydratable = isRehydratable(srDisplaySet, mappings);
srDisplaySet.isLoaded = true;
imageDisplaySets.forEach(imageDisplaySet => {
// Check currently added displaySets and add measurements if the sources exist.
checkIfCanAddMeasurementsToDisplaySet(srDisplaySet, imageDisplaySet);
});
});
};
const checkIfCanAddMeasurementsToDisplaySet = (
srDisplaySet,
imageDisplaySet
) => {
let measurements = srDisplaySet.measurements;
/**
* Look for image sets.
* This also filters out _this_ displaySet, as it is not an image set.
*/
if (!(imageDisplaySet instanceof ImageSet)) {
return;
}
const { sopClassUIDs, images } = imageDisplaySet;
/**
* Filter measurements that references the correct sop class.
*/
measurements = measurements.filter(measurement => {
return measurement.coords.some(coord => {
if (coord.ReferencedSOPSequence === undefined) {
/** we miss the referenced information. We can compare the annotation SCOORD3D coordinates with
* the ImagePatientPosition of the frames. However (WARNING!!!),
* if more than a source series is present, this logic can find the wrong frame
* (i.e. two source series, with the same frameOfReferenceUID,
* that have each a frame with the same ImagePositionPatient of the annotation 3D coordinates)
*/
for (let i = 0; i < images.length; ++i) {
const imageMetadata = images[i].getData().metadata;
if (
imageMetadata.FrameOfReferenceUID !==
coord.ReferencedFrameOfReferenceSequence
) {
continue;
}
let sliceNormal = [0, 0, 0];
const orientation = imageMetadata.ImageOrientationPatient;
sliceNormal[0] =
orientation[1] * orientation[5] - orientation[2] * orientation[4];
sliceNormal[1] =
orientation[2] * orientation[3] - orientation[0] * orientation[5];
sliceNormal[2] =
orientation[0] * orientation[4] - orientation[1] * orientation[3];
let distanceAlongNormal = 0;
for (let j = 0; j < 3; ++j) {
distanceAlongNormal +=
sliceNormal[j] * imageMetadata.ImagePositionPatient[j];
}
// assuming 1 mm tolerance
if (Math.abs(distanceAlongNormal - coord.GraphicData[2]) > 1) {
continue;
}
coord.ReferencedSOPSequence = {
ReferencedSOPClassUID: imageMetadata.SOPClassUID,
ReferencedSOPInstanceUID: imageMetadata.SOPInstanceUID,
};
break;
}
if (coord.ReferencedSOPSequence === undefined) {
return false;
}
}
return sopClassUIDs.includes(
coord.ReferencedSOPSequence.ReferencedSOPClassUID
);
});
});
/**
* New display set doesn't have measurements that references the correct sop class.
*/
if (measurements.length === 0) {
return;
}
const imageIds = images.map(i => i.getImageId());
const SOPInstanceUIDs = images.map(i => i.SOPInstanceUID);
const colors = new Map();
measurements.forEach(measurement => {
const { coords } = measurement;
coords.forEach((coord, index) => {
if (coord.ReferencedSOPSequence !== undefined) {
const imageIndex = SOPInstanceUIDs.findIndex(
SOPInstanceUID =>
SOPInstanceUID ===
coord.ReferencedSOPSequence.ReferencedSOPInstanceUID
);
if (imageIndex > -1) {
if (!srDisplaySet.referencedDisplaySets.includes(imageDisplaySet)) {
srDisplaySet.referencedDisplaySets.push(imageDisplaySet);
}
const imageId = imageIds[imageIndex];
const imageMetadata = images[imageIndex].getData().metadata;
if (coord.GraphicType === 'TEXT') {
const key =
measurement.labels[index].label + measurement.labels[index].value;
let color = colors.get(key);
if (!color) {
// random dark color
color =
'hsla(' + Math.floor(Math.random() * 360) + ', 70%, 30%, 1)';
colors.set(key, color);
}
measurement.labels[index].color = color;
measurement.isSRText = true;
measurement.labels[index].visible = true;
imageDisplaySet.SRLabels.push({
ReferencedSOPInstanceUID:
coord.ReferencedSOPSequence.ReferencedSOPInstanceUID,
labels: measurement.labels[index],
});
if (index === 0) {
addMeasurement(
measurement,
imageId,
imageMetadata,
imageDisplaySet.displaySetInstanceUID
);
}
} else {
addMeasurement(
measurement,
imageId,
imageMetadata,
imageDisplaySet.displaySetInstanceUID
);
}
}
}
});
});
};
export default parseSCOORD3D;
@@ -0,0 +1,104 @@
import csTools from 'cornerstone-tools';
import OHIF from '../../../';
/** Internal imports */
import TOOL_NAMES from '../constants/toolNames';
import getRenderableData from './getRenderableData';
const globalImageIdSpecificToolStateManager =
csTools.globalImageIdSpecificToolStateManager;
/**
* Add a measurement to a display set.
*
* @param {*} measurement
* @param {*} imageId
* @param {*} displaySetInstanceUID
*/
export default function addMeasurement(
measurement,
imageId,
imageMetadata,
displaySetInstanceUID
) {
// TODO -> Render rotated ellipse .
const toolName = TOOL_NAMES.DICOM_SR_DISPLAY_TOOL;
const measurementData = {
TrackingUniqueIdentifier: measurement.TrackingUniqueIdentifier,
TrackingIdentifier: measurement.TrackingIdentifier,
renderableData: {},
labels: measurement.labels,
isSRText: measurement.isSRText,
};
measurement.coords.forEach(coord => {
const { GraphicType, GraphicData, ValueType } = coord;
if (measurementData.renderableData[GraphicType] === undefined) {
measurementData.renderableData[GraphicType] = [];
}
measurementData.renderableData[GraphicType].push(
getRenderableData(GraphicType, GraphicData, ValueType, imageMetadata)
);
});
const toolState = globalImageIdSpecificToolStateManager.saveToolState();
if (toolState[imageId] === undefined) {
toolState[imageId] = {};
}
const imageIdToolState = toolState[imageId];
// If we don't have tool state for this type of tool, add an empty object
if (imageIdToolState[toolName] === undefined) {
imageIdToolState[toolName] = {
data: [],
};
}
const toolData = imageIdToolState[toolName];
measurementData.description = `Read-only annotation`;
measurementData.isReadOnly = true;
toolData.data.push(measurementData);
addToMeasurementApi({ measurementData, toolName, imageId });
measurement.loaded = true;
measurement.imageId = imageId;
measurement.displaySetInstanceUID = displaySetInstanceUID;
// Remove the unneeded coord now its processed, but keep the SOPInstanceUID.
// NOTE: We assume that each SCOORD in the MeasurementGroup maps onto one frame,
// It'd be super werid if it didn't anyway as a SCOORD.
measurement.ReferencedSOPInstanceUID =
measurement.coords[0].ReferencedSOPSequence.ReferencedSOPInstanceUID;
return measurement;
}
const addToMeasurementApi = ({ measurementData, toolName, imageId }) => {
const measurementApi = OHIF.measurements.MeasurementApi.Instance;
const toolType = toolName;
const collection = measurementApi.tools[toolType];
if (!collection) return;
if (!measurementData || measurementData.cancelled) return;
const imageAttributes = OHIF.measurements.getImageAttributes(null, imageId);
const measurement = Object.assign({}, measurementData, imageAttributes, {
lesionNamingNumber: measurementData.lesionNamingNumber,
userId: OHIF.user.getUserId(),
toolType,
});
const addedMeasurement = measurementApi.addMeasurement(toolType, measurement);
Object.assign(measurementData, addedMeasurement);
const measurementLabel = OHIF.measurements.getLabel(measurementData);
if (measurementLabel) {
measurementData.labels = [measurementLabel];
}
};
@@ -0,0 +1,23 @@
const getCoordsFromSCOORDOrSCOORD3D = graphicItem => {
const { ValueType, GraphicType, GraphicData } = graphicItem;
const coords = { ValueType, GraphicType, GraphicData };
if (ValueType === 'SCOORD') {
const { ReferencedSOPSequence } = graphicItem.ContentSequence;
coords.ReferencedSOPSequence = ReferencedSOPSequence;
} else if (ValueType === 'SCOORD3D') {
if (graphicItem.ReferencedFrameOfReferenceUID) {
coords.ReferencedFrameOfReferenceSequence =
graphicItem.ReferencedFrameOfReferenceUID;
} else if (graphicItem.ContentSequence) {
const {
ReferencedFrameOfReferenceSequence,
} = graphicItem.ContentSequence;
coords.ReferencedFrameOfReferenceSequence = ReferencedFrameOfReferenceSequence;
}
}
return coords;
};
export default getCoordsFromSCOORDOrSCOORD3D;
@@ -0,0 +1,19 @@
const getLabelFromMeasuredValueSequence = (
ConceptNameCodeSequence,
MeasuredValueSequence
) => {
const { CodeMeaning } = ConceptNameCodeSequence;
const { NumericValue, MeasurementUnitsCodeSequence } = MeasuredValueSequence;
const { CodeValue } = MeasurementUnitsCodeSequence;
const formatedNumericValue = NumericValue
? Number(NumericValue).toFixed(1)
: '';
return {
label: CodeMeaning,
value: `${formatedNumericValue} ${CodeValue}`,
}; // E.g. Long Axis: 31.0 mm
};
export default getLabelFromMeasuredValueSequence;
@@ -0,0 +1,38 @@
import { CodeNameCodeSequenceValues } from '../enums';
import getSequenceAsArray from './getSequenceAsArray';
import getMergedContentSequencesByTrackingUniqueIdentifiers from './getMergedContentSequencesByTrackingUniqueIdentifiers';
import processMeasurement from './processMeasurement';
const getMeasurements = ImagingMeasurementReportContentSequence => {
const ImagingMeasurements = ImagingMeasurementReportContentSequence.find(
item =>
item.ConceptNameCodeSequence.CodeValue ===
CodeNameCodeSequenceValues.ImagingMeasurements
);
const MeasurementGroups = getSequenceAsArray(
ImagingMeasurements.ContentSequence
).filter(
item =>
item.ConceptNameCodeSequence.CodeValue ===
CodeNameCodeSequenceValues.MeasurementGroup
);
/* const mergedContentSequencesByTrackingUniqueIdentifiers = getMergedContentSequencesByTrackingUniqueIdentifiers(
MeasurementGroups
);*/
let measurements = [];
MeasurementGroups.forEach(MeasurementGroup => {
const contentSequence = MeasurementGroup.ContentSequence;
const measurement = processMeasurement(contentSequence);
if (measurement) {
measurements.push(measurement);
}
});
return measurements;
};
export default getMeasurements;
@@ -0,0 +1,54 @@
import getSequenceAsArray from './getSequenceAsArray';
import { CodeNameCodeSequenceValues } from '../enums';
const getMergedContentSequencesByTrackingUniqueIdentifiers = MeasurementGroups => {
const mergedContentSequencesByTrackingUniqueIdentifiers = {};
MeasurementGroups.forEach(MeasurementGroup => {
const ContentSequence = getSequenceAsArray(
MeasurementGroup.ContentSequence
);
const TrackingUniqueIdentifierItem = ContentSequence.find(
item =>
item.ConceptNameCodeSequence.CodeValue ===
CodeNameCodeSequenceValues.TrackingUniqueIdentifier
);
if (!TrackingUniqueIdentifierItem) {
console.warn(
'No Tracking Unique Identifier, skipping ambiguous measurement.'
);
}
const trackingUniqueIdentifier = TrackingUniqueIdentifierItem.UID;
if (
mergedContentSequencesByTrackingUniqueIdentifiers[
trackingUniqueIdentifier
] === undefined
) {
// Add the full ContentSequence
mergedContentSequencesByTrackingUniqueIdentifiers[
trackingUniqueIdentifier
] = [...ContentSequence];
} else {
// Add the ContentSequence minus the tracking identifier, as we have this
// Information in the merged ContentSequence anyway.
ContentSequence.forEach(item => {
if (
item.ConceptNameCodeSequence.CodeValue !==
CodeNameCodeSequenceValues.TrackingUniqueIdentifier
) {
mergedContentSequencesByTrackingUniqueIdentifiers[
trackingUniqueIdentifier
].push(item);
}
});
}
});
return mergedContentSequencesByTrackingUniqueIdentifiers;
};
export default getMergedContentSequencesByTrackingUniqueIdentifiers;
@@ -0,0 +1,43 @@
import getSequenceAsArray from './getSequenceAsArray';
import { CodeNameCodeSequenceValues } from '../enums';
const getReferencedImagesList = ImagingMeasurementReportContentSequence => {
const referencedImages = [];
const ImageLibrary = ImagingMeasurementReportContentSequence.find(
item =>
item.ConceptNameCodeSequence.CodeValue ===
CodeNameCodeSequenceValues.ImageLibrary
);
if (!ImageLibrary.ContentSequence) {
return referencedImages;
}
const ImageLibraryGroup = getSequenceAsArray(
ImageLibrary.ContentSequence
).find(
item =>
item.ConceptNameCodeSequence.CodeValue ===
CodeNameCodeSequenceValues.ImageLibraryGroup
);
getSequenceAsArray(ImageLibraryGroup.ContentSequence).forEach(item => {
const { ReferencedSOPSequence } = item;
if (ReferencedSOPSequence) {
const {
ReferencedSOPClassUID,
ReferencedSOPInstanceUID,
} = ReferencedSOPSequence;
referencedImages.push({
ReferencedSOPClassUID,
ReferencedSOPInstanceUID,
});
}
});
return referencedImages;
};
export default getReferencedImagesList;
@@ -0,0 +1,196 @@
import csMath from 'cornerstone-math';
import SCOORD_TYPES from '../constants/scoordTypes';
import { inv } from 'mathjs';
const getRenderableData = (
GraphicType,
GraphicData,
ValueType,
imageMetadata
) => {
let renderableData;
const orientation = imageMetadata.ImageOrientationPatient;
const position = imageMetadata.ImagePositionPatient;
const pixelSpacing = imageMetadata.PixelSpacing;
const sliceSpacing = imageMetadata.SliceThickness
? imageMetadata.SliceThickness
: 1;
// https://nipy.org/nibabel/dicom/dicom_orientation.html
const M = [
[
orientation[0] * pixelSpacing[0],
orientation[3] * pixelSpacing[1],
sliceSpacing,
position[0],
],
[
orientation[1] * pixelSpacing[0],
orientation[4] * pixelSpacing[1],
sliceSpacing,
position[1],
],
[
orientation[2] * pixelSpacing[0],
orientation[5] * pixelSpacing[1],
sliceSpacing,
position[2],
],
[0, 0, 0, 1],
];
// we need to go from 3D to pixel (cornerstone2D works in pixel coordinates),
// we take the inverse.
const M1 = inv(M);
const worldToIJK = (point, M1) => {
const worldPoint = {
x:
M1[0][0] * point.x + M1[0][1] * point.y + M1[0][2] * point.z + M1[0][3],
y:
M1[1][0] * point.x + M1[1][1] * point.y + M1[1][2] * point.z + M1[1][3],
z:
M1[2][0] * point.x + M1[2][1] * point.y + M1[2][2] * point.z + M1[2][3],
};
return worldPoint;
};
// https://dicom.innolitics.com/ciods/procedure-log/sr-document-content/00700023
switch (GraphicType) {
case SCOORD_TYPES.TEXT:
renderableData = [{ x: GraphicData[0], y: GraphicData[1] }];
break;
case SCOORD_TYPES.POINT:
renderableData = [];
if (ValueType === 'SCOORD3D') {
for (let i = 0; i < GraphicData.length; i += 3) {
const point = {
x: GraphicData[i],
y: GraphicData[i + 1],
z: GraphicData[i + 2],
};
renderableData.push(worldToIJK(point, M1));
}
} else {
for (let i = 0; i < GraphicData.length; i += 2) {
renderableData.push({ x: GraphicData[i], y: GraphicData[i + 1] });
}
}
break;
case SCOORD_TYPES.MULTIPOINT:
renderableData = [];
if (ValueType === 'SCOORD3D') {
for (let i = 0; i < GraphicData.length; i += 3) {
const point = {
x: GraphicData[i],
y: GraphicData[i + 1],
z: GraphicData[i + 2],
};
renderableData.push(worldToIJK(point, M1));
}
} else {
for (let i = 0; i < GraphicData.length; i += 2) {
renderableData.push({ x: GraphicData[i], y: GraphicData[i + 1] });
}
}
break;
case SCOORD_TYPES.POLYLINE:
renderableData = [];
if (ValueType === 'SCOORD3D') {
for (let i = 0; i < GraphicData.length; i += 3) {
const point = {
x: GraphicData[i],
y: GraphicData[i + 1],
z: GraphicData[i + 2],
};
renderableData.push(worldToIJK(point, M1));
}
} else {
for (let i = 0; i < GraphicData.length; i += 2) {
renderableData.push({ x: GraphicData[i], y: GraphicData[i + 1] });
}
}
break;
case SCOORD_TYPES.POLYGON:
// this is only scoord3d
renderableData = [];
for (let i = 0; i < GraphicData.length; i += 3) {
const point = {
x: GraphicData[i],
y: GraphicData[i + 1],
z: GraphicData[i + 2],
};
renderableData.push(worldToIJK(point, M1));
}
break;
case SCOORD_TYPES.CIRCLE: {
// this is only scoord
const center = { x: GraphicData[0], y: GraphicData[1] };
const onPerimeter = { x: GraphicData[2], y: GraphicData[3] };
const radius = csMath.point.distance(center, onPerimeter);
renderableData = {
center,
radius,
};
break;
}
case SCOORD_TYPES.ELLIPSE: {
console.warn('ROTATED ELLIPSE NOT YET SUPPORTED!');
// To Do: scoord3d ellips, need data for testing
const majorAxis = [
{ x: GraphicData[0], y: GraphicData[1] },
{ x: GraphicData[2], y: GraphicData[3] },
];
const minorAxis = [
{ x: GraphicData[4], y: GraphicData[5] },
{ x: GraphicData[6], y: GraphicData[7] },
];
// Calculate two opposite corners of box defined by two axes.
const minorAxisLength = csMath.point.distance(minorAxis[0], minorAxis[1]);
const minorAxisDirection = {
x: (minorAxis[1].x - minorAxis[0].x) / minorAxisLength,
y: (minorAxis[1].y - minorAxis[0].y) / minorAxisLength,
};
const halfMinorAxisLength = minorAxisLength / 2;
// First end point of major axis + half minor axis vector
const corner1 = {
x: majorAxis[0].x + minorAxisDirection.x * halfMinorAxisLength,
y: majorAxis[0].y + minorAxisDirection.y * halfMinorAxisLength,
};
// Second end point of major axis - half of minor axis vector
const corner2 = {
x: majorAxis[1].x - minorAxisDirection.x * halfMinorAxisLength,
y: majorAxis[1].y - minorAxisDirection.y * halfMinorAxisLength,
};
renderableData = {
corner1,
corner2,
};
break;
}
}
return renderableData;
};
export default getRenderableData;
@@ -0,0 +1,4 @@
const getSequenceAsArray = sequence =>
Array.isArray(sequence) ? sequence : [sequence];
export default getSequenceAsArray;
@@ -0,0 +1,48 @@
import { adapters } from 'dcmjs';
const cornerstoneAdapters = adapters.Cornerstone;
/**
* Checks if the given `displaySet`can be rehydrated into the `MeasurementService`.
*
* @param {object} displaySet The SR `displaySet` to check.
* @param {object[]} mappings The CornerstoneTools 4 mappings to the `MeasurementService`.
* @returns {boolean} True if the SR can be rehydrated into the `MeasurementService`.
*/
export default function isRehydratable(displaySet, mappings) {
if (!mappings || !mappings.length) {
return false;
}
const mappingDefinitions = mappings.map(m => m.definition);
const { measurements } = displaySet;
const adapterKeys = Object.keys(cornerstoneAdapters).filter(
adapterKey =>
typeof cornerstoneAdapters[adapterKey]
.isValidCornerstoneTrackingIdentifier === 'function'
);
const adapters = [];
adapterKeys.forEach(key => {
if (mappingDefinitions.includes(key)) {
// Must have both a dcmjs adapter and a MeasurementService
// Definition in order to be a candidate for import.
adapters.push(cornerstoneAdapters[key]);
}
});
for (let i = 0; i < measurements.length; i++) {
const TrackingIdentifier = measurements[i].TrackingIdentifier;
const hydratable = adapters.some(adapter =>
adapter.isValidCornerstoneTrackingIdentifier(TrackingIdentifier)
);
if (hydratable) {
return true;
}
}
return false;
}
@@ -0,0 +1,16 @@
import processTID1410Measurement from './processTID1410Measurement';
import processNonGeometricallyDefinedMeasurement from './processNonGeometricallyDefinedMeasurement';
const processMeasurement = contentSequence => {
if (
contentSequence.some(
group => group.ValueType === 'SCOORD' || group.ValueType === 'SCOORD3D'
)
) {
return processTID1410Measurement(contentSequence);
}
return processNonGeometricallyDefinedMeasurement(contentSequence);
};
export default processMeasurement;
@@ -0,0 +1,157 @@
import getLabelFromMeasuredValueSequence from './getLabelFromMeasuredValueSequence';
import getCoordsFromSCOORDOrSCOORD3D from './getCoordsFromSCOORDOrSCOORD3D';
import { CodeNameCodeSequenceValues, CodingSchemeDesignators } from '../enums';
import SCOORD_TYPES from '../constants/scoordTypes';
const CORNERSTONE_FREETEXT_CODE_VALUE = 'CORNERSTONEFREETEXT';
const processNonGeometricallyDefinedMeasurement = contentSequence => {
const NUMContentItems = contentSequence.filter(
group => group.ValueType === 'NUM'
);
const CODEContentItems = contentSequence.filter(
group => group.ValueType === 'CODE'
);
const UIDREFContentItem = contentSequence.find(
group => group.ValueType === 'UIDREF'
);
const IMAGEContentItem = contentSequence.find(
group => group.ValueType === 'IMAGE'
);
const TrackingIdentifierContentItem = contentSequence.find(
item =>
item.ConceptNameCodeSequence.CodeValue ===
CodeNameCodeSequenceValues.TrackingIdentifier
);
const Finding = contentSequence.find(
item =>
item.ConceptNameCodeSequence.CodeValue ===
CodeNameCodeSequenceValues.Finding
);
const FindingSites = contentSequence.filter(
item =>
item.ConceptNameCodeSequence.CodingSchemeDesignator ===
CodingSchemeDesignators.SRT &&
item.ConceptNameCodeSequence.CodeValue ===
CodeNameCodeSequenceValues.FindingSite
);
const measurement = {
loaded: false,
labels: [],
coords: [],
TrackingUniqueIdentifier: UIDREFContentItem.UID,
TrackingIdentifier: TrackingIdentifierContentItem.TextValue,
};
if (
Finding &&
Finding.ConceptCodeSequence.CodingSchemeDesignator ===
CodingSchemeDesignators.cornerstoneTools4 &&
Finding.ConceptCodeSequence.CodeValue ===
CodeNameCodeSequenceValues.CornerstoneFreeText
) {
measurement.labels.push({
label: CORNERSTONE_FREETEXT_CODE_VALUE,
value: Finding.ConceptCodeSequence.CodeMeaning,
});
}
// TODO -> Eventually hopefully support SNOMED or some proper code library, just free text for now.
if (FindingSites.length) {
const cornerstoneFreeTextFindingSite = FindingSites.find(
FindingSite =>
FindingSite.ConceptCodeSequence.CodingSchemeDesignator ===
CodingSchemeDesignators.cornerstoneTools4 &&
FindingSite.ConceptCodeSequence.CodeValue ===
CodeNameCodeSequenceValues.CornerstoneFreeText
);
if (cornerstoneFreeTextFindingSite) {
measurement.labels.push({
label: CORNERSTONE_FREETEXT_CODE_VALUE,
value: cornerstoneFreeTextFindingSite.ConceptCodeSequence.CodeMeaning,
});
}
}
NUMContentItems.forEach(item => {
const {
ConceptNameCodeSequence,
ContentSequence,
MeasuredValueSequence,
} = item;
if (!ContentSequence) {
console.warn(`Graphic ${ContentSequence} missing, skipping annotation.`);
return;
}
const { ValueType } = ContentSequence;
if (!ValueType === 'SCOORD' && !ValueType === 'SCOORD3D') {
console.warn(
`Graphic ${ValueType} not currently supported, skipping annotation.`
);
return;
}
const coords = getCoordsFromSCOORDOrSCOORD3D(ContentSequence);
if (coords) {
measurement.coords.push(coords);
}
if (MeasuredValueSequence) {
measurement.labels.push(
getLabelFromMeasuredValueSequence(
ConceptNameCodeSequence,
MeasuredValueSequence
)
);
}
});
if (NUMContentItems.length === 0 && IMAGEContentItem) {
CODEContentItems.forEach(item => {
const { ConceptCodeSequence, ConceptNameCodeSequence } = item;
if (!ConceptCodeSequence || !ConceptNameCodeSequence) {
console.warn(`Graphic missing, skipping annotation.`);
return;
}
const GraphicData = [0, 0];
const GraphicType = SCOORD_TYPES.TEXT;
const { ValueType } = item;
const ReferencedSOPSequence = IMAGEContentItem.ReferencedSOPSequence;
const coord = {
ValueType,
GraphicType,
GraphicData,
ReferencedSOPSequence,
};
measurement.coords.push(coord);
measurement.labels.push({
label: ConceptNameCodeSequence.CodeMeaning,
labelCodingSchemeDesignator:
ConceptNameCodeSequence.CodingSchemeDesignator,
value: ConceptCodeSequence.CodeMeaning,
valueCodingSchemeDesignator: ConceptCodeSequence.CodingSchemeDesignator,
});
});
}
return measurement;
};
export default processNonGeometricallyDefinedMeasurement;
@@ -0,0 +1,88 @@
import getLabelFromMeasuredValueSequence from './getLabelFromMeasuredValueSequence';
import getCoordsFromSCOORDOrSCOORD3D from './getCoordsFromSCOORDOrSCOORD3D';
import { RELATIONSHIP_TYPE, CodeNameCodeSequenceValues } from '../enums';
/**
* TID 1410 Planar ROI Measurements and Qualitative Evaluations.
*
* @param {*} contentSequence
* @returns
*/
const processTID1410Measurement = contentSequence => {
// Need to deal with TID 1410 style measurements, which will have a SCOORD or SCOORD3D at the top level,
// And non-geometric representations where each NUM has "INFERRED FROM" SCOORD/SCOORD3D
const graphicItem = contentSequence.find(
group => group.ValueType === 'SCOORD' || group.ValueType === 'SCOORD3D'
);
if (!graphicItem) {
console.warn(
`graphic ValueType ${graphicItem.ValueType} not currently supported, skipping annotation.`
);
return;
}
const UIDREFContentItem = contentSequence.find(
group => group.ValueType === 'UIDREF'
);
const TrackingIdentifierContentItem = contentSequence.find(
item =>
item.ConceptNameCodeSequence.CodeValue ===
CodeNameCodeSequenceValues.TrackingIdentifier
);
const NUMContentItems = contentSequence.filter(
group => group.ValueType === 'NUM'
);
const measurement = {
loaded: false,
labels: [],
coords: [getCoordsFromSCOORDOrSCOORD3D(graphicItem)],
TrackingUniqueIdentifier: UIDREFContentItem.UID,
TrackingIdentifier: TrackingIdentifierContentItem.TextValue,
};
NUMContentItems.forEach(item => {
const {
ConceptNameCodeSequence,
ContentSequence,
MeasuredValueSequence,
} = item;
if (
item.ConceptNameCodeSequence.CodeValue ===
CodeNameCodeSequenceValues.Score
) {
ContentSequence.forEach(item => {
if (
[
RELATIONSHIP_TYPE.SELECTED_FROM,
RELATIONSHIP_TYPE.INFERRED_FROM,
].includes(item.RelationshipType)
) {
if (item.ReferencedSOPSequence) {
measurement.coords.forEach(coord => {
coord.ReferencedSOPSequence = item.ReferencedSOPSequence;
});
}
}
});
}
if (MeasuredValueSequence) {
measurement.labels.push(
getLabelFromMeasuredValueSequence(
ConceptNameCodeSequence,
MeasuredValueSequence
)
);
}
});
return measurement;
};
export default processTID1410Measurement;
+3 -2
View File
@@ -19,9 +19,10 @@ import findMostRecentStructuredReport from './utils/findMostRecentStructuredRepo
* Function to be registered into MeasurementAPI to retrieve measurements from DICOM Structured Reports
*
* @param {serverType} server
* @param {object} external
* @returns {Promise} Should resolve with OHIF measurementData object
*/
const retrieveMeasurements = server => {
const retrieveMeasurements = (server, external = {}) => {
log.info('[DICOMSR] retrieveMeasurements');
if (!server || server.type !== 'dicomWeb') {
@@ -36,7 +37,7 @@ const retrieveMeasurements = server => {
if (!latestSeries) return Promise.resolve({});
return retrieveMeasurementFromSR(latestSeries, studies, serverUrl);
return retrieveMeasurementFromSR(latestSeries, studies, serverUrl, external);
};
/**
@@ -17,9 +17,15 @@ const TRANSFER_SYNTAX_UID = '1.2.840.10008.1.2.1';
* @param {Array} series - List of all series metaData loaded
* @param {Array} studies - List of all studies metaData loaded
* @param {string} serverUrl - Server URL to be used on request
* @param {object} external
* @returns {Object} MeasurementData
*/
const retrieveMeasurementFromSR = async (series, studies, serverUrl) => {
const retrieveMeasurementFromSR = async (
series,
studies,
serverUrl,
external
) => {
const config = {
url: serverUrl,
headers: DICOMWeb.getAuthorizationHeader(),
@@ -40,7 +46,8 @@ const retrieveMeasurementFromSR = async (series, studies, serverUrl) => {
const displaySets = getAllDisplaySets(studies);
const measurementsData = parseDicomStructuredReport(
part10SRArrayBuffer,
displaySets
displaySets,
external
);
return measurementsData;
@@ -1,5 +1,6 @@
import dcmjs from 'dcmjs';
import classes from '../classes';
import parseSCOORD3D from './SCOORD3D/parseSCOORD3D';
import findInstanceMetadataBySopInstanceUID from './utils/findInstanceMetadataBySopInstanceUid';
@@ -12,11 +13,19 @@ const { LogManager } = classes;
*
* @param {ArrayBuffer} part10SRArrayBuffer
* @param {Array} displaySets
* @param {object} external
* @returns
*/
const parseDicomStructuredReport = (part10SRArrayBuffer, displaySets) => {
// Get the dicom data as an Object
const parseDicomStructuredReport = (
part10SRArrayBuffer,
displaySets,
external
) => {
if (external && external.servicesManager) {
parseSCOORD3D({ servicesManager: external.servicesManager, displaySets });
}
// Get the dicom data as an Object
const dicomData = dcmjs.data.DicomMessage.readFile(part10SRArrayBuffer);
const dataset = dcmjs.data.DicomMetaDictionary.naturalizeDataset(
dicomData.dict
@@ -41,6 +41,7 @@ const isStructuredReportSeries = series => {
const supportedSopClassUIDs = [
'1.2.840.10008.5.1.4.1.1.88.22',
'1.2.840.10008.5.1.4.1.1.11.1',
'1.2.840.10008.5.1.4.1.1.88.34', // COMPREHENSIVE_3D_SR
];
const firstInstance = series.getFirstInstance();
@@ -98,7 +98,7 @@ class DICOMFileLoadingListener extends BaseLoadingListener {
constructor(stack, options) {
super(stack, options);
this.imageLoadProgressEventHandler = this._imageLoadProgressEventHandle.bind(
this.imageLoadProgressEventHandler = this._imageLoadProgressEventHandler.bind(
this
);
@@ -401,7 +401,7 @@ class StackLoadingListener extends BaseLoadingListener {
const totalFramesCount = this.stack.imageIds.length;
const loadedFramesCount = this.loadedCount;
const loadingFramesCount = totalFramesCount - loadedFramesCount;
const percentComplete = Math.round(
const percentComplete = Math.ceil(
(loadedFramesCount / totalFramesCount) * 100
);
const progressId = this._getProgressId();
@@ -469,8 +469,8 @@ class StudyLoadingListener {
// TODO: Make this work for plugins
if (!stack) {
console.warn('Skipping adding displaySet to StudyLoadingListener');
console.warn(displaySet);
//console.warn('Skipping adding displaySet to StudyLoadingListener');
//console.warn(displaySet);
return;
}
+16 -4
View File
@@ -1,6 +1,4 @@
import cornerstone from 'cornerstone-core';
import cornerstoneTools from 'cornerstone-tools';
import getImageId from '../utils/getImageId.js';
const noop = () => {};
@@ -13,6 +11,7 @@ export class StudyPrefetcher {
requestType: 'prefetch',
preventCache: false,
prefetchDisplaySetsTimeout: 300,
maxNumPrefetchRequests: 100,
includeActiveDisplaySet: false,
};
@@ -94,7 +93,11 @@ export class StudyPrefetcher {
}
this.element = element;
this.enabledElement = cornerstone.getEnabledElement(element);
try {
this.enabledElement = cornerstone.getEnabledElement(element);
} catch {
throw new Error('Failed to find the enabled element');
}
this.stopPrefetching();
this.prefetchDisplaySets(displaySetInstanceUID);
@@ -114,7 +117,11 @@ export class StudyPrefetcher {
* @param {number} timeout
*/
prefetchDisplaySetsAsync(element, timeout) {
this.enabledElement = cornerstone.getEnabledElement(element);
try {
this.enabledElement = cornerstone.getEnabledElement(element);
} catch {
throw new Error('Failed to find the enabled element');
}
timeout = timeout || this.options.prefetchDisplaySetsTimeout;
clearTimeout(this.prefetchDisplaySetsHandler);
this.prefetchDisplaySetsHandler = setTimeout(() => {
@@ -145,6 +152,11 @@ export class StudyPrefetcher {
const nonCachedImageIds = this.filterCachedImageIds(imageIds);
const imageLoadPoolManager = cornerstone.imageLoadPoolManager;
imageLoadPoolManager.maxNumRequests = {
...imageLoadPoolManager.maxNumRequests,
prefetch: this.options.maxNumPrefetchRequests,
};
let requestFn;
if (this.options.preventCache) {
requestFn = id => cornerstone.loadImage(id);
@@ -3,13 +3,16 @@ import DICOMWeb from './../../DICOMWeb';
import ImageSet from './../ImageSet';
import { InstanceMetadata } from './InstanceMetadata';
import { Metadata } from './Metadata';
import OHIFError from '../OHIFError';
import { SeriesMetadata } from './SeriesMetadata';
// - createStacks
import { api } from 'dicomweb-client';
// - createStacks
import { isImage } from '../../utils/isImage';
import { isDisplaySetReconstructable, isSpacingUniform } from '../../utils/isDisplaySetReconstructable';
import { naturalizeSOPClassUID } from '../../utils/naturalizeSOPClassUID';
import {
isDisplaySetReconstructable,
isSpacingUniform,
} from '../../utils/isDisplaySetReconstructable';
import errorHandler from '../../errorHandler';
import isLowPriorityModality from '../../utils/isLowPriorityModality';
import getXHRRetryRequestHook from '../../utils/xhrRetryRequestHook';
@@ -159,41 +162,71 @@ class StudyMetadata extends Metadata {
// series into another display set.
const stackableInstances = [];
series.forEachInstance(instance => {
let displaySet;
// All imaging modalities must have a valid value for SOPClassUID (x00080016) or Rows (x00280010)
if (
!isImage(instance.getTagValue('SOPClassUID')) &&
!instance.getTagValue('Rows')
) {
return;
}
let displaySet;
if (isMultiFrame(instance)) {
displaySet = makeDisplaySet(series, [instance]);
// we set an empty display and we add a isSOPClassUIDSupported variable to
// print a warning that the series is not supported in the thumbnail.
// SOPClassUIDNaturalized is human readable name, since for non image series,
// we could have a mismatch between the SOPClassUID and the Modality.
// For example, in the Parametric map IOD Modality is expected to match
// the value for the series used to generate Parametric map, and there is no "PM" modality.
const displaySet = new ImageSet([]);
const seriesData = series.getData();
displaySet.setAttributes({
sopClassUIDs,
isClip: true,
displaySetInstanceUID: displaySet.uid,
SeriesDate: seriesData.SeriesDate,
SeriesTime: seriesData.SeriesTime,
SeriesInstanceUID: series.getSeriesInstanceUID(),
StudyInstanceUID: study.getStudyInstanceUID(), // Include the study instance UID for drag/drop purposes
numImageFrames: instance.getTagValue('NumberOfFrames'), // Override the default value of instances.length
InstanceNumber: instance.getTagValue('InstanceNumber'), // Include the instance number
AcquisitionDatetime: instance.getTagValue('AcquisitionDateTime'), // Include the acquisition datetime
});
displaySets.push(displaySet);
} else if (isSingleImageModality(instance.Modality)) {
displaySet = makeDisplaySet(series, [instance]);
displaySet.setAttributes({
sopClassUIDs,
SeriesNumber: instance.getTagValue('SeriesNumber'),
SeriesDescription: instance.getTagValue('SeriesDescription'),
numImageFrames: instance.getTagValue('NumberOfFrames'),
frameRate: instance.getTagValue('FrameTime'),
Modality: instance.getTagValue('Modality'),
isMultiFrame: false,
StudyInstanceUID: study.getStudyInstanceUID(), // Include the study instance UID
SeriesInstanceUID: series.getSeriesInstanceUID(),
InstanceNumber: instance.getTagValue('InstanceNumber'), // Include the instance number
AcquisitionDatetime: instance.getTagValue('AcquisitionDateTime'), // Include the acquisition datetime
isReconstructable: false,
isSOPClassUIDSupported: false,
SOPClassUIDNaturalized: naturalizeSOPClassUID(
instance.getTagValue('SOPClassUID')
),
metadata: instance.getData().metadata,
});
displaySets.push(displaySet);
} else {
stackableInstances.push(instance);
if (isMultiFrame(instance)) {
displaySet = makeDisplaySet(series, [instance]);
displaySet.setAttributes({
sopClassUIDs,
isClip: true,
SeriesInstanceUID: series.getSeriesInstanceUID(),
StudyInstanceUID: study.getStudyInstanceUID(), // Include the study instance UID for drag/drop purposes
numImageFrames: instance.getTagValue('NumberOfFrames'), // Override the default value of instances.length
InstanceNumber: instance.getTagValue('InstanceNumber'), // Include the instance number
AcquisitionDatetime: instance.getTagValue('AcquisitionDateTime'), // Include the acquisition datetime
});
displaySets.push(displaySet);
} else if (isSingleImageModality(instance.Modality)) {
displaySet = makeDisplaySet(series, [instance]);
displaySet.setAttributes({
sopClassUIDs,
StudyInstanceUID: study.getStudyInstanceUID(), // Include the study instance UID
SeriesInstanceUID: series.getSeriesInstanceUID(),
InstanceNumber: instance.getTagValue('InstanceNumber'), // Include the instance number
AcquisitionDatetime: instance.getTagValue('AcquisitionDateTime'), // Include the acquisition datetime
});
displaySets.push(displaySet);
} else {
stackableInstances.push(instance);
}
}
});
@@ -227,7 +260,6 @@ class StudyMetadata extends Metadata {
displaySets.map(displaySet => this._derivedDisplaySets.push(displaySet));
}
/**
* Returns the source display set of the derivated display set.
* @param {object} derivatedDisplaySet
@@ -242,40 +274,45 @@ class StudyMetadata extends Metadata {
});
const otherDisplaySets = allDisplaySets.filter(
ds => ds.displaySetInstanceUID !== derivatedDisplaySet.displaySetInstanceUID
ds =>
ds.displaySetInstanceUID !== derivatedDisplaySet.displaySetInstanceUID
);
const { metadata } = derivatedDisplaySet;
let referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromSourceImageSequence
(metadata, otherDisplaySets);
let referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromSourceImageSequence(
metadata,
otherDisplaySets
);
let noReferencedSeriesAvailable = !referencedSeriesInstanceUIDs ||
let noReferencedSeriesAvailable =
!referencedSeriesInstanceUIDs ||
referencedSeriesInstanceUIDs.length === 0;
if (noReferencedSeriesAvailable) {
referencedSeriesInstanceUIDs =
_findReferencedSeriesInstanceUIDsFromReferencedSeriesSequence
(metadata);
referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromReferencedSeriesSequence(
metadata
);
}
noReferencedSeriesAvailable = !referencedSeriesInstanceUIDs ||
noReferencedSeriesAvailable =
!referencedSeriesInstanceUIDs ||
referencedSeriesInstanceUIDs.length === 0;
if (noReferencedSeriesAvailable) {
referencedSeriesInstanceUIDs =
_findReferencedSeriesInstanceUIDsFromReferencedImageSequence
(metadata, otherDisplaySets);
referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromReferencedImageSequence(
metadata,
otherDisplaySets
);
}
const referencedSeriesAvailable = referencedSeriesInstanceUIDs &&
referencedSeriesInstanceUIDs.length !== 0;
const referencedSeriesAvailable =
referencedSeriesInstanceUIDs && referencedSeriesInstanceUIDs.length !== 0;
if (referencedSeriesAvailable) {
const referencedDisplaySet = otherDisplaySets.find(ds =>
referencedSeriesInstanceUIDs.includes(ds.SeriesInstanceUID)
);
;
return referencedDisplaySet;
}
};
}
/**
* Returns a list of derived datasets in the study, filtered by the given filter.
@@ -303,7 +340,38 @@ class StudyMetadata extends Metadata {
if (referencedSeriesInstanceUID) {
filteredDerivedDisplaySets = filteredDerivedDisplaySets.filter(
displaySet => {
return StudyMetadata.getReferencedDisplaySet(displaySet, [this]).SeriesInstanceUID === referencedSeriesInstanceUID;
const referencedDisplaySet = StudyMetadata.getReferencedDisplaySet(
displaySet,
[this]
);
if (referencedDisplaySet) {
return (
referencedDisplaySet.SeriesInstanceUID ===
referencedSeriesInstanceUID
);
} else {
if (
!displaySet.referencedDisplaySets ||
displaySet.referencedDisplaySets.length === 0
) {
return false;
}
const filteredReferencedDisplaySets = displaySet.referencedDisplaySets.filter(
referencedDisplaySet =>
referencedDisplaySet.SeriesInstanceUID ===
referencedSeriesInstanceUID
);
if (
filteredReferencedDisplaySets &&
filteredReferencedDisplaySets.length !== 0
) {
return true;
}
return false;
}
}
);
}
@@ -311,8 +379,7 @@ class StudyMetadata extends Metadata {
if (referencedFrameOfReferenceUID) {
filteredDerivedDisplaySets = filteredDerivedDisplaySets.filter(
displaySet =>
displaySet.FrameOfReferenceUID ===
referencedFrameOfReferenceUID
displaySet.FrameOfReferenceUID === referencedFrameOfReferenceUID
);
}
@@ -497,8 +564,10 @@ class StudyMetadata extends Metadata {
}
}
if (this._displaySets.some(ds =>
ds.displaySetInstanceUID === displaySet.displaySetInstanceUID)
if (
this._displaySets.some(
ds => ds.displaySetInstanceUID === displaySet.displaySetInstanceUID
)
) {
return;
}
@@ -867,8 +936,9 @@ const makeDisplaySet = (series, instances) => {
imageSet.sortByImagePositionPatient();
// check if the spacing is uniform and update isReconstructable
const datasetIs4D = displayReconstructableInfo.reconstructionIssues.find
(issue => issue === ReconstructionIssues.DATASET_4D);
const datasetIs4D = displayReconstructableInfo.reconstructionIssues.find(
issue => issue === ReconstructionIssues.DATASET_4D
);
displaySpacingInfo = isSpacingUniform(imageSet.images, datasetIs4D);
imageSet.isReconstructable = displaySpacingInfo.isUniform;
@@ -881,11 +951,15 @@ const makeDisplaySet = (series, instances) => {
if (!imageSet.displayReconstructableInfo) {
// It is not reconstrabale Save type of warning
imageSet.reconstructionIssues = displaySpacingInfo ?
displayReconstructableInfo.reconstructionIssues.concat(displaySpacingInfo.reconstructionIssues) :
displayReconstructableInfo.reconstructionIssues;
imageSet.reconstructionIssues = displaySpacingInfo
? displayReconstructableInfo.reconstructionIssues.concat(
displaySpacingInfo.reconstructionIssues
)
: displayReconstructableInfo.reconstructionIssues;
}
imageSet.isSOPClassUIDSupported = true;
return imageSet;
};
@@ -963,38 +1037,36 @@ function _getDisplaySetFromSopClassModule(
}
/**
* Returns the referenced series instance UIDs by searching the information in the
* ReferencedSeriesSequence.
* @param {object} derivatedDisplaySet.metadata
* @return {array[string]} referenced series instance UIDs.
*/
function _findReferencedSeriesInstanceUIDsFromReferencedSeriesSequence (
metadata,
* Returns the referenced series instance UIDs by searching the information in the
* ReferencedSeriesSequence.
* @param {object} derivatedDisplaySet.metadata
* @return {array[string]} referenced series instance UIDs.
*/
function _findReferencedSeriesInstanceUIDsFromReferencedSeriesSequence(
metadata
) {
if (!metadata.ReferencedSeriesSequence) {
return;
}
let referencedSeriesInstanceUIDs;
const ReferencedSeriesSequence = _toArray(
metadata.ReferencedSeriesSequence
);
const ReferencedSeriesSequence = _toArray(metadata.ReferencedSeriesSequence);
referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
ReferencedSeries => ReferencedSeries.SeriesInstanceUID
);
return referencedSeriesInstanceUIDs;
};
}
/**
* Returns the referenced series instance UIDs by searching the information in the
* ReferencedImageSequence.
* @param {object} derivatedDisplaySet.metadata
* @param {array[object]} displaysets
* @return {array[string]} referenced series instance UIDs.
*/
function _findReferencedSeriesInstanceUIDsFromReferencedImageSequence (
* Returns the referenced series instance UIDs by searching the information in the
* ReferencedImageSequence.
* @param {object} derivatedDisplaySet.metadata
* @param {array[object]} displaysets
* @return {array[string]} referenced series instance UIDs.
*/
function _findReferencedSeriesInstanceUIDsFromReferencedImageSequence(
metadata,
displaySets
) {
@@ -1015,22 +1087,25 @@ function _findReferencedSeriesInstanceUIDsFromReferencedImageSequence (
ReferencedSOPInstanceUID
);
if (referencedSeriesInstanceUIDs && referencedSeriesInstanceUIDs.length !== 0) {
if (
referencedSeriesInstanceUIDs &&
referencedSeriesInstanceUIDs.length !== 0
) {
break;
}
}
return referencedSeriesInstanceUIDs;
};
}
/**
* Returns the referenced series instance UIDs by searching the information in the
* SourceImageSequence.
* @param {object} derivatedDisplaySet.metadata
* @param {array[object]} displaysets
* @return {array[string]} referenced series instance UIDs.
*/
function _findReferencedSeriesInstanceUIDsFromSourceImageSequence (
* Returns the referenced series instance UIDs by searching the information in the
* SourceImageSequence.
* @param {object} derivatedDisplaySet.metadata
* @param {array[object]} displaysets
* @return {array[string]} referenced series instance UIDs.
*/
function _findReferencedSeriesInstanceUIDsFromSourceImageSequence(
metadata,
displaySets
) {
@@ -1040,9 +1115,7 @@ function _findReferencedSeriesInstanceUIDsFromSourceImageSequence (
SourceImageSequence = metadata.SourceImageSequence;
} else {
const { PerFrameFunctionalGroupsSequence } = metadata;
const firstFunctionalGroups = _toArray(
PerFrameFunctionalGroupsSequence
)[0];
const firstFunctionalGroups = _toArray(PerFrameFunctionalGroupsSequence)[0];
if (firstFunctionalGroups) {
const { DerivationImageSequence } = firstFunctionalGroups;
SourceImageSequence = DerivationImageSequence;
@@ -1062,22 +1135,25 @@ function _findReferencedSeriesInstanceUIDsFromSourceImageSequence (
displaySets,
ReferencedSOPInstanceUID
);
if (referencedSeriesInstanceUIDs && referencedSeriesInstanceUIDs.length !== 0) {
if (
referencedSeriesInstanceUIDs &&
referencedSeriesInstanceUIDs.length !== 0
) {
break;
}
}
return referencedSeriesInstanceUIDs;
};
}
/**
* Returns the referenced series instance UIDs by searching the information in the
* SOPInstanceUID of the displaySets.
* @param {array[object]} displaysets
* @param {string} SOPInstanceUID
* @return {array[string]} referenced series instance UIDs.
*/
function _findReferencedSeriesInstanceUIDsFromSOPInstanceUID (
* Returns the referenced series instance UIDs by searching the information in the
* SOPInstanceUID of the displaySets.
* @param {array[object]} displaysets
* @param {string} SOPInstanceUID
* @return {array[string]} referenced series instance UIDs.
*/
function _findReferencedSeriesInstanceUIDsFromSOPInstanceUID(
displaySets,
SOPInstanceUID
) {
@@ -1098,10 +1174,10 @@ function _findReferencedSeriesInstanceUIDsFromSOPInstanceUID (
}
}
}
};
}
function _toArray(arrayOrObject) {
return Array.isArray(arrayOrObject) ? arrayOrObject : [arrayOrObject];
}
export {StudyMetadata};
export { StudyMetadata };
+3
View File
@@ -20,6 +20,7 @@ import ui from './ui';
import user from './user.js';
import errorHandler from './errorHandler.js';
import utils, { hotkeys } from './utils/';
import str2ab from './utils/str2ab';
import {
UINotificationService,
@@ -96,6 +97,8 @@ export {
UIDialogService,
MeasurementService,
LoggerService,
str2ab,
};
export { OHIF };
+1
View File
@@ -26,6 +26,7 @@ describe('Top level exports', () => {
'cornerstone',
'default', //
'errorHandler',
'str2ab',
'string',
'ui',
'user',
@@ -802,6 +802,10 @@ export default class MeasurementApi {
collection.push(addedMeasurement);
}
if (measurement.isReadOnly) {
addedMeasurement.isReadOnly = measurement.isReadOnly;
}
if (!emptyItem) {
// Reflect the entry in the tool group collection
groupCollection.push({
@@ -1,9 +1,11 @@
import cornerstone from 'cornerstone-core';
export default function(element) {
// Get the Cornerstone imageId
const enabledElement = cornerstone.getEnabledElement(element);
const imageId = enabledElement.image.imageId;
export default function(element, imageId) {
if (!imageId) {
// Get the Cornerstone imageId
const enabledElement = cornerstone.getEnabledElement(element);
imageId = enabledElement.image.imageId;
}
// Get StudyInstanceUID & PatientID
const {
@@ -0,0 +1,23 @@
export const dicomSRDisplayTool = {
id: 'DICOMSRDisplayTool',
name: 'DICOMSRDisplayTool',
toolGroup: 'allTools',
cornerstoneToolType: 'DICOMSRDisplayTool',
options: {
measurementTable: {
displayFunction: data => {
return `(SR) ${data.TrackingIdentifier ||
data.lesionNamingNumber ||
data.measurementNumber ||
data.text ||
''}`;
},
},
caseProgress: {
include: true,
evaluate: true,
},
},
};
export default dicomSRDisplayTool;
@@ -10,6 +10,7 @@ import { angle } from './angle';
import { targetCR } from './targetCR';
import { targetNE } from './targetNE';
import { targetUN } from './targetUN';
import dicomSRDisplayTool from './dicomSRDisplayTool';
export {
arrowAnnotate,
@@ -24,4 +25,5 @@ export {
targetCR,
targetNE,
targetUN,
dicomSRDisplayTool,
};
@@ -1,5 +1,7 @@
/** Internal imports */
import log from '../../log';
import guid from '../../utils/guid';
import pubSubServiceInterface from '../_shared/pubSubServiceInterface';
/**
* Measurement source schema
@@ -15,7 +17,7 @@ import guid from '../../utils/guid';
*
* @typedef {Object} Measurement
* @property {number} id -
* @property {string} sopInstanceUid -
* @property {string} SOPInstanceUID -
* @property {string} FrameOfReferenceUID -
* @property {string} referenceSeriesUID -
* @property {string} label -
@@ -32,24 +34,37 @@ const MEASUREMENT_SCHEMA_KEYS = [
'id',
'SOPInstanceUID',
'FrameOfReferenceUID',
'referenceStudyUID',
'referenceSeriesUID',
'label',
'description',
'type',
'unit',
'area', // TODO: Add concept names instead (descriptor)
'mean',
'stdDev',
'length',
'shortestDiameter',
'longestDiameter',
'text', // NOTE: There is nothing like this in SR.
'points',
'source',
];
const EVENTS = {
MEASUREMENT_UPDATED: 'event::measurement_updated',
INTERNAL_MEASUREMENT_UPDATED: 'event:internal_measurement_updated',
MEASUREMENT_ADDED: 'event::measurement_added',
RAW_MEASUREMENT_ADDED: 'event::raw_measurement_added',
MEASUREMENT_REMOVED: 'event::measurement_removed',
MEASUREMENTS_CLEARED: 'event::measurements_cleared',
JUMP_TO_MEASUREMENT: 'event:jump_to_measurement',
};
const VALUE_TYPES = {
POLYLINE: 'value_type::polyline',
POINT: 'value_type::point',
BIDIRECTIONAL: 'value_type::shortAxisLongAxis', // TODO -> Discuss with Danny. => just using SCOORD values isn't enough here.
ELLIPSE: 'value_type::ellipse',
MULTIPOINT: 'value_type::multipoint',
CIRCLE: 'value_type::circle',
@@ -61,6 +76,7 @@ class MeasurementService {
this.mappings = {};
this.measurements = {};
this.listeners = {};
this._jumpToMeasurementCache = {};
Object.defineProperty(this, 'EVENTS', {
value: EVENTS,
writable: false,
@@ -73,6 +89,8 @@ class MeasurementService {
enumerable: true,
configurable: false,
});
Object.assign(this, pubSubServiceInterface);
}
/**
@@ -91,7 +109,7 @@ class MeasurementService {
/**
* Get specific measurement by its id.
*
* @param {string} id If of the measurement
* @param {string} id Id of the measurement
* @return {Measurement} Measurement instance
*/
getMeasurement(id) {
@@ -114,13 +132,11 @@ class MeasurementService {
*/
createSource(name, version) {
if (!name) {
log.warn('Source name not provided. Exiting early.');
return;
throw new Error('Source name not provided.');
}
if (!version) {
log.warn('Source version not provided. Exiting early.');
return;
throw new Error('Source version not provided.');
}
const id = guid();
@@ -132,6 +148,9 @@ class MeasurementService {
source.addOrUpdate = (definition, measurement) => {
return this.addOrUpdate(source, definition, measurement);
};
source.remove = id => {
return this.remove(id, source);
};
source.getAnnotation = (definition, measurementId) => {
return this.getAnnotation(source, definition, measurementId);
};
@@ -142,6 +161,32 @@ class MeasurementService {
return source;
}
getSource(name, version) {
const { sources } = this;
const id = this._getSourceId(name, version);
return sources[id];
}
getSourceMappings(name, version) {
const { mappings } = this;
const id = this._getSourceId(name, version);
return mappings[id];
}
_getSourceId(name, version) {
const { sources } = this;
const sourceId = Object.keys(sources).find(sourceId => {
const source = sources[sourceId];
return source.name === name && source.version === version;
});
return sourceId;
}
/**
* Add a new measurement matching criteria along with mapping functions.
*
@@ -160,28 +205,23 @@ class MeasurementService {
toMeasurementSchema
) {
if (!this._isValidSource(source)) {
log.warn('Invalid source. Exiting early.');
return;
throw new Error('Invalid source.');
}
if (!matchingCriteria) {
log.warn('Matching criteria not provided. Exiting early.');
return;
throw new Error('Matching criteria not provided.');
}
if (!definition) {
log.warn('Definition not provided. Exiting early.');
return;
throw new Error('Definition not provided.');
}
if (!toSourceSchema) {
log.warn('Source mapping function not provided. Exiting early.');
return;
throw new Error('Mapping function to source schema not provided.');
}
if (!toMeasurementSchema) {
log.warn('Measurement mapping function not provided. Exiting early.');
return;
throw new Error('Measurement mapping function not provided.');
}
const mapping = {
@@ -227,9 +267,9 @@ class MeasurementService {
measurementId,
definition
);
const measurement = this.getMeasurement(measurementId);
if (mapping) return mapping.toSourceSchema(measurement, definition);
const measurement = this.getMeasurement(measurementId);
const matchingMapping = this._getMatchingMapping(
source,
definition,
@@ -243,15 +283,50 @@ class MeasurementService {
}
}
update(id, measurement, notYetUpdatedAtSource = false) {
if (this.measurements[id]) {
const updatedMeasurement = {
...measurement,
modifiedTimestamp: Math.floor(Date.now() / 1000),
};
log.info(
`Updating internal measurement representation...`,
updatedMeasurement
);
this.measurements[id] = updatedMeasurement;
this.publish(
// Add an internal flag to say the measurement has not yet been updated at source.
this.EVENTS.MEASUREMENT_UPDATED,
{
source: measurement.source,
measurement: updatedMeasurement,
notYetUpdatedAtSource,
}
);
return updatedMeasurement.id;
}
}
/**
* Adds or update persisted measurements.
*
* @param {MeasurementSource} source The measurement source instance
* @param {string} definition The source definition
* @param {Measurement} measurement The source measurement
* @return {string} A measurement id
* Add a raw measurement into a source so that it may be
* Converted to/from annotation in the same way. E.g. import serialized data
* Of the same form as the measurement source.
* @param {MeasurementSource} source The measurement source instance.
* @param {string} definition The source definition you want to add the measurement to.
* @param {object} data The data you wish to add to the source.
* @param {function} toMeasurementSchema A function to get the `data` into the same shape as the source definition.
*/
addOrUpdate(source, definition, sourceMeasurement) {
addRawMeasurement(
source,
definition,
data,
toMeasurementSchema,
dataSource = {}
) {
if (!this._isValidSource(source)) {
log.warn('Invalid source. Exiting early.');
return;
@@ -273,14 +348,8 @@ class MeasurementService {
let measurement = {};
try {
const sourceMappings = this.mappings[source.id];
const { toMeasurementSchema } = sourceMappings.find(
mapping => mapping.definition === definition
);
/* Convert measurement */
measurement = toMeasurementSchema(sourceMeasurement);
measurement = toMeasurementSchema(data);
/* Assign measurement source instance */
measurement.source = source;
} catch (error) {
@@ -298,7 +367,7 @@ class MeasurementService {
return;
}
let internalId = sourceMeasurement.id;
let internalId = data.id;
if (!internalId) {
internalId = guid();
log.warn(`Measurement ID not found. Generating UID: ${internalId}`);
@@ -316,49 +385,171 @@ class MeasurementService {
newMeasurement
);
this.measurements[internalId] = newMeasurement;
this._broadcastChange(
this.EVENTS.MEASUREMENT_UPDATED,
this.publish(this.EVENTS.MEASUREMENT_UPDATED, {
source,
newMeasurement
);
measurement: newMeasurement,
});
} else {
log.info(`Measurement added.`, newMeasurement);
this.measurements[internalId] = newMeasurement;
this._broadcastChange(
this.EVENTS.MEASUREMENT_ADDED,
this.publish(this.EVENTS.RAW_MEASUREMENT_ADDED, {
source,
newMeasurement
);
measurement: newMeasurement,
data,
dataSource,
});
}
return newMeasurement.id;
}
/**
* Subscribe to measurement updates.
* Adds or update persisted measurements.
*
* @param {string} eventName The name of the event
* @param {Function} callback Events callback
* @return {Object} Observable object with actions
* @param {MeasurementSource} source The measurement source instance
* @param {string} definition The source definition
* @param {Measurement} measurement The source measurement
* @return {string} A measurement id
*/
subscribe(eventName, callback) {
if (this._isValidEvent(eventName)) {
const listenerId = guid();
const subscription = { id: listenerId, callback };
console.info(`Subscribing to '${eventName}'.`);
if (Array.isArray(this.listeners[eventName])) {
this.listeners[eventName].push(subscription);
} else {
this.listeners[eventName] = [subscription];
}
return {
unsubscribe: () => this._unsubscribe(eventName, listenerId),
};
} else {
throw new Error(`Event ${eventName} not supported.`);
addOrUpdate(source, definition, sourceMeasurement) {
if (!this._isValidSource(source)) {
throw new Error('Invalid source.');
}
if (!definition) {
throw new Error('No source definition provided.');
}
if (definition == 'stack' || definition == 'stackPrefetch') {
return;
}
const sourceInfo = this._getSourceInfo(source);
if (!this._sourceHasMappings(source)) {
throw new Error(
`No measurement mappings found for '${sourceInfo}' source. Exiting early.`
);
}
let measurement = {};
try {
const sourceMappings = this.mappings[source.id];
const { toMeasurementSchema } = sourceMappings.find(
mapping => mapping.definition === definition
);
/* Convert measurement */
measurement = toMeasurementSchema(sourceMeasurement);
/* Assign measurement source instance */
measurement.source = source;
} catch (error) {
throw new Error(
`Failed to map '${sourceInfo}' measurement for definition ${definition}:`,
error.message
);
}
if (!this._isValidMeasurement(measurement)) {
throw new Error(
`Attempting to add or update a invalid measurement provided by '${sourceInfo}'. Exiting early.`
);
}
let internalId = sourceMeasurement.id;
if (!internalId) {
internalId = guid();
log.info(`Measurement ID not found. Generating UID: ${internalId}`);
}
const newMeasurement = {
...measurement,
modifiedTimestamp: Math.floor(Date.now() / 1000),
id: internalId,
};
if (this.measurements[internalId]) {
log.info(
`Measurement already defined. Updating measurement.`,
newMeasurement
);
this.measurements[internalId] = newMeasurement;
this.publish(this.EVENTS.MEASUREMENT_UPDATED, {
source,
measurement: newMeasurement,
notYetUpdatedAtSource: false,
});
} else {
log.info('Measurement added.', newMeasurement);
this.measurements[internalId] = newMeasurement;
this.publish(this.EVENTS.MEASUREMENT_ADDED, {
source,
measurement: newMeasurement,
});
}
return newMeasurement.id;
}
/**
* Removes a measurement and broadcasts the removed event.
*
* @param {string} id The measurement id
* @param {MeasurementSource} source The measurement source instance
* @return {string} The removed measurement id
*/
remove(id, source) {
if (!id || !this.measurements[id]) {
log.warn(`No id provided, or unable to find measurement by id.`);
return;
}
delete this.measurements[id];
this.publish(this.EVENTS.MEASUREMENT_REMOVED, {
source,
measurement: id, // This is weird :shrug:
});
}
clearMeasurements() {
this.measurements = {};
this._jumpToMeasurementCache = {};
this.publish(this.EVENTS.MEASUREMENTS_CLEARED);
}
jumpToMeasurement(viewportIndex, id) {
const measurement = this.measurements[id];
if (!measurement) {
log.warn(`No id provided, or unable to find measurement by id.`);
return;
}
this._addJumpToMeasurement(viewportIndex, id);
const eventName = this.EVENTS.JUMP_TO_MEASUREMENT;
const hasListeners = Object.keys(this.listeners).length > 0;
const hasCallbacks = Array.isArray(this.listeners[eventName]);
if (hasListeners && hasCallbacks) {
this.listeners[eventName].forEach(listener => {
listener.callback({ viewportIndex, measurement });
});
}
}
_addJumpToMeasurement(viewportIndex, id) {
this._jumpToMeasurementCache[viewportIndex] = id;
}
getJumpToMeasurement(viewportIndex) {
return this._jumpToMeasurementCache[viewportIndex];
}
removeJumpToMeasurement(viewportIndex) {
delete this._jumpToMeasurementCache[viewportIndex];
}
_getMappingByMeasurementSource(measurementId, definition) {
@@ -370,12 +561,20 @@ class MeasurementService {
}
}
/**
* Clear all measurements and broadcasts cleared event.
*/
clear() {
this.measurements = {};
this.publish(this.EVENTS.MEASUREMENTS_CLEARED);
}
/**
* Get measurement mapping function if matching criteria.
*
* @param {MeasurementSource} source Measurement source instance
* @param {string} definition The source definition
* @param {string} measurement The measurement serice measurement
* @param {Measurement} measurement The measurement service measurement
* @return {Object} The mapping based on matched criteria
*/
_getMatchingMapping(source, definition, measurement) {
@@ -387,10 +586,27 @@ class MeasurementService {
/* Criteria Matching */
return sourceMappingsByDefinition.find(({ matchingCriteria }) => {
return (
if (matchingCriteria.type !== measurement.type) {
return false;
}
if (
matchingCriteria.properties &&
matchingCriteria.properties.every(name =>
measurement.hasOwnProperty(name)
)
) {
return true;
}
if (
measurement.points &&
measurement.points.length === matchingCriteria.points
);
) {
return true;
}
return false;
});
}
@@ -426,47 +642,6 @@ class MeasurementService {
);
}
/**
* Broadcasts measurement changes.
*
* @param {string} measurementId The measurement id
* @param {MeasurementSource} source The measurement source
* @param {string} eventName The event name
* @return void
*/
_broadcastChange(eventName, source, measurement) {
const hasListeners = Object.keys(this.listeners).length > 0;
const hasCallbacks = Array.isArray(this.listeners[eventName]);
if (hasListeners && hasCallbacks) {
this.listeners[eventName].forEach(listener => {
listener.callback({ source, measurement });
});
}
}
/**
* Unsubscribe to measurement updates.
*
* @param {string} eventName The name of the event
* @param {string} listenerId The listeners id
* @return void
*/
_unsubscribe(eventName, listenerId) {
if (!this.listeners[eventName]) {
return;
}
const listeners = this.listeners[eventName];
if (Array.isArray(listeners)) {
this.listeners[eventName] = listeners.filter(
({ id }) => id !== listenerId
);
} else {
this.listeners[eventName] = undefined;
}
}
/**
* Check if a given measurement data is valid.
*
@@ -489,10 +664,10 @@ class MeasurementService {
*
* @param {string} eventName The name of the event
* @return {boolean} Event name validation
*/
_isValidEvent(eventName) {
return Object.values(this.EVENTS).includes(eventName);
}
// */
// _isValidEvent(eventName) {
// return Object.values(this.EVENTS).includes(eventName);
// }
/**
* Converts object of objects to array.
@@ -13,7 +13,7 @@ describe('MeasurementService.js', () => {
let source;
let definition;
let matchingCriteria;
let toAnnotation;
let toSourceSchema;
let toMeasurement;
let annotation;
@@ -34,11 +34,20 @@ describe('MeasurementService.js', () => {
unit: 'mm',
area: 123,
type: measurementService.VALUE_TYPES.POLYLINE,
points: [{ x: 1, y: 2 }, { x: 1, y: 2 }],
points: [
{ x: 1, y: 2 },
{ x: 1, y: 2 },
],
source: source,
};
toAnnotation = () => annotation;
toMeasurement = () => measurement;
toSourceSchema = () => annotation;
toMeasurement = () => {
if (Object.keys(measurement).includes('invalidProperty')) {
throw new Error('Measurement does not match schema');
}
return measurement;
}
matchingCriteria = {
valueType: measurementService.VALUE_TYPES.POLYLINE,
points: 2,
@@ -52,16 +61,16 @@ describe('MeasurementService.js', () => {
measurementService.createSource('Testing', '1');
});
it('logs warning and return early if no name provided', () => {
measurementService.createSource(null, '1');
expect(log.warn.mock.calls.length).toBe(1);
it('throws Error if no name provided', () => {
expect(() => {
measurementService.createSource(null, '1')
}).toThrow(new Error('Source name not provided.'));
});
it('logs warning and return early if no version provided', () => {
measurementService.createSource('Testing', null);
expect(log.warn.mock.calls.length).toBe(1);
it('throws Error if no version provided', () => {
expect(() => {
measurementService.createSource('Testing', null)
}).toThrow(new Error('Source version not provided.'));
});
});
@@ -71,83 +80,84 @@ describe('MeasurementService.js', () => {
source,
definition,
matchingCriteria,
toAnnotation,
toSourceSchema,
toMeasurement
);
});
it('logs warning and return early if no matching criteria provided', () => {
measurementService.addMapping(
source,
definition,
null,
toAnnotation,
toMeasurement
);
it('throws Error if invalid source provided', () => {
expect(() => {
const invalidSource = {};
expect(log.warn.mock.calls.length).toBe(1);
measurementService.addMapping(
invalidSource,
definition,
matchingCriteria,
toSourceSchema,
toMeasurement
);
}).toThrow(new Error('Invalid source.'));
});
it('logs warning and return early if invalid source provided', () => {
const invalidSoure = {};
measurementService.addMapping(
invalidSoure,
definition,
matchingCriteria,
toAnnotation,
toMeasurement
);
expect(log.warn.mock.calls.length).toBe(1);
it('throws Error if no matching criteria provided', () => {
expect(() => {
measurementService.addMapping(
source,
definition,
null,
toSourceSchema,
toMeasurement
);
}).toThrow(new Error('Matching criteria not provided.'));
});
it('logs warning and return early if no source provided', () => {
measurementService.addMapping(
null /* source */,
definition,
matchingCriteria,
toAnnotation,
toMeasurement
);
expect(log.warn.mock.calls.length).toBe(1);
it('throws Error if no source provided', () => {
expect(() => {
measurementService.addMapping(
null /* source */,
definition,
matchingCriteria,
toSourceSchema,
toMeasurement
);
}).toThrow(new Error('Invalid source.'));
});
it('logs warning and return early if no definition provided', () => {
measurementService.addMapping(
source,
null /* definition */,
matchingCriteria,
toAnnotation,
toMeasurement
);
expect(log.warn.mock.calls.length).toBe(1);
expect(() => {
measurementService.addMapping(
source,
null /* definition */,
matchingCriteria,
toSourceSchema,
toMeasurement
);
}).toThrow(new Error('Definition not provided.'));
});
it('logs warning and return early if no measurement mapping function provided', () => {
measurementService.addMapping(
source,
definition,
matchingCriteria,
null /* toAnnotation */,
toMeasurement
);
expect(log.warn.mock.calls.length).toBe(1);
it('throws Error if no measurement mapping function provided', () => {
expect(() => {
measurementService.addMapping(
source,
definition,
matchingCriteria,
null /* toSourceSchema */,
toMeasurement
);
}).toThrow(new Error('Mapping function to source schema not provided.'));
});
it('logs warning and return early if no annotation mapping function provided', () => {
measurementService.addMapping(
source,
definition,
matchingCriteria,
toAnnotation,
null /* toMeasurement */
);
expect(log.warn.mock.calls.length).toBe(1);
it('throws Error if no annotation mapping function provided', () => {
expect(() => {
measurementService.addMapping(
source,
definition,
matchingCriteria,
toSourceSchema,
null /* toMeasurement */
);
}).toThrow(new Error('Measurement mapping function not provided.'));
});
});
@@ -157,7 +167,7 @@ describe('MeasurementService.js', () => {
source,
definition,
matchingCriteria,
toAnnotation,
toSourceSchema,
toMeasurement
);
const measurementId = source.addOrUpdate(definition, annotation);
@@ -171,7 +181,7 @@ describe('MeasurementService.js', () => {
source,
definition,
{},
toAnnotation,
toSourceSchema,
toMeasurement
);
const measurementId = source.addOrUpdate(definition, annotation);
@@ -193,7 +203,7 @@ describe('MeasurementService.js', () => {
source,
definition,
matchingCriteria,
toAnnotation,
toSourceSchema,
toMeasurement
);
@@ -212,7 +222,7 @@ describe('MeasurementService.js', () => {
source,
definition,
matchingCriteria,
toAnnotation,
toSourceSchema,
toMeasurement
);
@@ -232,7 +242,7 @@ describe('MeasurementService.js', () => {
source,
definition,
matchingCriteria,
toAnnotation,
toSourceSchema,
toMeasurement
);
@@ -245,9 +255,9 @@ describe('MeasurementService.js', () => {
});
it('fails to add new measurements when no mapping', () => {
source.addOrUpdate(definition, measurement);
expect(log.warn.mock.calls.length).toBe(1);
expect(() => {
source.addOrUpdate(definition, measurement);
}).toThrow()
});
it('fails to add new measurements when invalid mapping function', () => {
@@ -255,13 +265,13 @@ describe('MeasurementService.js', () => {
source,
definition,
matchingCriteria,
toAnnotation,
toSourceSchema,
1 /* Invalid */
);
source.addOrUpdate(definition, measurement);
expect(log.warn.mock.calls.length).toBe(1);
expect(() => {
source.addOrUpdate(definition, measurement);
}).toThrow()
});
it('adds new measurement with custom id', () => {
@@ -271,7 +281,7 @@ describe('MeasurementService.js', () => {
source,
definition,
matchingCriteria,
toAnnotation,
toSourceSchema,
toMeasurement
);
@@ -288,28 +298,28 @@ describe('MeasurementService.js', () => {
expect(newMeasurement).toEqual(savedMeasurement);
});
it('logs warning and return if adding invalid measurement', () => {
it('throws Error if adding invalid measurement', () => {
measurement.invalidProperty = {};
measurementService.addMapping(
source,
definition,
matchingCriteria,
toAnnotation,
toSourceSchema,
toMeasurement
);
source.addOrUpdate(definition, measurement);
expect(log.warn.mock.calls.length).toBe(2);
expect(() => {
source.addOrUpdate(definition, measurement);
}).toThrow()
});
it('updates existent measurement', () => {
it('updates existing measurement', () => {
measurementService.addMapping(
source,
definition,
matchingCriteria,
toAnnotation,
toSourceSchema,
toMeasurement
);
@@ -330,7 +340,7 @@ describe('MeasurementService.js', () => {
source,
definition,
matchingCriteria,
toAnnotation,
toSourceSchema,
toMeasurement
);
@@ -354,7 +364,7 @@ describe('MeasurementService.js', () => {
source,
definition,
matchingCriteria,
toAnnotation,
toSourceSchema,
toMeasurement
);
@@ -381,7 +391,7 @@ describe('MeasurementService.js', () => {
source,
definition,
matchingCriteria,
toAnnotation,
toSourceSchema,
toMeasurement
);
@@ -0,0 +1,3 @@
import pubSubServiceInterface from './pubSubServiceInterface';
export { pubSubServiceInterface };
@@ -0,0 +1,88 @@
import guid from '../../utils/guid';
/**
* Consumer must implement:
* this.listeners = {}
* this.EVENTS = { "EVENT_KEY": "EVENT_VALUE" }
*/
export default {
subscribe,
publish,
_unsubscribe,
_isValidEvent,
};
/**
* Subscribe to updates.
*
* @param {string} eventName The name of the event
* @param {Function} callback Events callback
* @return {Object} Observable object with actions
*/
function subscribe(eventName, callback) {
if (this._isValidEvent(eventName)) {
const listenerId = guid();
const subscription = { id: listenerId, callback };
console.info(`Subscribing to '${eventName}'.`);
if (Array.isArray(this.listeners[eventName])) {
this.listeners[eventName].push(subscription);
} else {
this.listeners[eventName] = [subscription];
}
return {
unsubscribe: () => this._unsubscribe(eventName, listenerId),
};
} else {
throw new Error(`Event ${eventName} not supported.`);
}
}
/**
* Unsubscribe to measurement updates.
*
* @param {string} eventName The name of the event
* @param {string} listenerId The listeners id
* @return void
*/
function _unsubscribe(eventName, listenerId) {
if (!this.listeners[eventName]) {
return;
}
const listeners = this.listeners[eventName];
if (Array.isArray(listeners)) {
this.listeners[eventName] = listeners.filter(({ id }) => id !== listenerId);
} else {
this.listeners[eventName] = undefined;
}
}
/**
* Check if a given event is valid.
*
* @param {string} eventName The name of the event
* @return {boolean} Event name validation
*/
function _isValidEvent(eventName) {
return Object.values(this.EVENTS).includes(eventName);
}
/**
* Broadcasts changes.
*
* @param {string} eventName - The event name
* @param {func} callbackProps - Properties to pass callback
* @return void
*/
function publish(eventName, callbackProps) {
const hasListeners = Object.keys(this.listeners).length > 0;
const hasCallbacks = Array.isArray(this.listeners[eventName]);
if (hasListeners && hasCallbacks) {
this.listeners[eventName].forEach(listener => {
listener.callback(callbackProps);
});
}
}
@@ -9,38 +9,27 @@ import { api } from 'dicomweb-client';
*/
export default class StaticWadoClient extends api.DICOMwebClient {
static filterKeys = {
StudyInstanceUID: '0020000D',
PatientName: '00100010',
PatientID: '00100020',
StudyDescription: '00081030',
ModalitiesInStudy: '00080061',
"StudyInstanceUID": "0020000D",
"PatientName": "00100010",
"00100020": "mrn",
"PatientID": "00100020",
"StudyDescription": "00081030",
"StudyDate": "00080020",
"ModalitiesInStudy": "00080061",
AccessionNumber: "00080050",
};
constructor(qidoConfig) {
super(qidoConfig);
this.staticWado = qidoConfig.staticWado;
this.extendMetadataWithInstances = qidoConfig.extendMetadataWithInstances;
}
async retrieveSeriesMetadata(options) {
if (!this.extendMetadataWithInstances)
return super.retrieveSeriesMetadata(options);
const results = await Promise.all([
super.retrieveSeriesMetadata(options),
this.searchForInstances(options),
]);
const metadata = results[0];
const instances = results[1];
return metadata.map(item => {
const sopUID = item['00080018'].Value[0];
const instance = instances.find(
instance => instance['00080018'].Value[0] == sopUID
);
Object.assign(item, instance);
return item;
});
}
/**
* Replace the search for studies remote query with a local version which
* retrieves a complete query list and then sub-selects from it locally.
* @param {*} options
* @returns
*/
async searchForStudies(options) {
if (!this.staticWado) return super.searchForStudies(options);
@@ -56,6 +45,62 @@ export default class StaticWadoClient extends api.DICOMwebClient {
return filtered;
}
/**
* Compares values, matching any instance of desired to any instance of
* actual by recursively go through the paired set of values. That is,
* this is O(m*n) where m is how many items in desired and n is the length of actual
* Then, at the individual item node, compares the Alphabetic name if present,
* and does a sub-string matching on string values, and otherwise does an
* exact match comparison.
*
* @param {*} desired
* @param {*} actual
* @returns true if the values match
*/
compareValues(desired, actual) {
if (Array.isArray(desired)) {
return desired.find(item => this.compareValues(item, actual));
}
if (Array.isArray(actual)) {
return actual.find(actualItem => this.compareValues(desired, actualItem));
}
if (actual && actual.Alphabetic) {
actual = actual.Alphabetic;
}
if (typeof (actual) == 'string') {
if (actual.length === 0) return true;
if (desired.length === 0 || desired === '*') return true;
if (desired[0] === '*' && desired[desired.length - 1] === '*') {
console.log(`Comparing ${actual} to ${desired.substring(1, desired.length - 1)}`)
return actual.indexOf(desired.substring(1, desired.length - 1)) != -1;
} else if (desired[desired.length - 1] === '*') {
return actual.indexOf(desired.substring(0, desired.length - 1)) != -1;
} else if (desired[0] === '*') {
return actual.indexOf(desired.substring(1)) === actual.length - desired.length + 1;
}
}
return desired === actual;
}
/** Compares a pair of dates to see if the value is within the range */
compareDateRange(range, value) {
if (!value) return true;
const dash = range.indexOf('-');
if (dash === -1) return this.compareValues(range, value);
const start = range.substring(0, dash);
const end = range.substring(dash + 1);
return (!start || value >= start) &&
(!end || value <= end);
}
/**
* Filters the return list by the query parameters.
*
* @param {*} key
* @param {*} queryParams
* @param {*} study
* @returns
*/
filterItem(key, queryParams, study) {
const altKey = StaticWadoClient.filterKeys[key] || key;
if (!queryParams) return true;
@@ -63,23 +108,8 @@ export default class StaticWadoClient extends api.DICOMwebClient {
if (!testValue) return true;
const valueElem = study[key] || study[altKey];
if (!valueElem) return false;
if (valueElem.vr == 'DA') return this.compareDateRange(testValue, valueElem.Value[0]);
const value = valueElem.Value;
return this.eqItem(testValue, value);
}
eqItem(testValue, value) {
if (testValue.filter) {
return (
testValue.filter(testItem => this.eqItem(testItem, value)).length > 0
);
}
if (value === testValue) return true;
if (typeof value == 'string') {
return value.indexOf(testValue) != -1;
}
if (value.Alphabetic) return this.eqItem(testValue, value.Alphabetic);
if (value.filter)
return value.filter(item => this.eqItem(testValue, item)).length > 0;
return false;
return this.compareValues(testValue, value) && true;
}
}
@@ -116,6 +116,11 @@ async function makeSOPInstance(server, study, instance) {
};
study.seriesMap[SeriesInstanceUID] = series;
study.series.push(series);
} else {
if (series.SeriesDate === undefined)
series.SeriesDate = naturalizedInstance.SeriesDate;
if (series.SeriesTime === undefined)
series.SeriesTime = naturalizedInstance.SeriesTime;
}
const wadouri = buildInstanceWadoUrl(
+2 -2
View File
@@ -25,7 +25,7 @@ function createAndAddStack(stackMap, study, displaySet, stackUpdatedCallbacks) {
const imageIds = [];
let imageId;
displaySet.images.forEach((instance, imageIndex) => {
images.forEach((instance, imageIndex) => {
const image = instance.getData();
const metaData = {
instance: image, // in this context, instance will be the data of the InstanceMetadata object...
@@ -35,7 +35,7 @@ function createAndAddStack(stackMap, study, displaySet, stackUpdatedCallbacks) {
imageIndex: imageIndex + 1,
};
const naturalizedInstance = instance.getData().metadata;
const naturalizedInstance = image.metadata;
const NumberOfFrames = naturalizedInstance.NumberOfFrames;
if (NumberOfFrames > 1) {
@@ -1,6 +1,5 @@
import { ReconstructionIssues } from './../enums.js';
/**
* Checks if a series is reconstructable to a 3D volume.
*
@@ -78,7 +77,9 @@ function processSingleframe(instances) {
reconstructionIssues.push(ReconstructionIssues.VARYING_IMAGESDIMENSIONS);
} else if (SamplesPerPixel !== firstImageSamplesPerPixel) {
reconstructionIssues.push(ReconstructionIssues.VARYING_IMAGESCOMPONENTS);
} else if (!_isSameArray(ImageOrientationPatient, firstImageOrientationPatient)) {
} else if (
!_isSameArray(ImageOrientationPatient, firstImageOrientationPatient)
) {
reconstructionIssues.push(ReconstructionIssues.VARYING_IMAGESORIENTATION);
}
@@ -92,7 +93,10 @@ function processSingleframe(instances) {
reconstructionIssues.push(ReconstructionIssues.DATASET_4D);
}
return { value: reconstructionIssues.length === 0 ? true : false, reconstructionIssues };
return {
value: reconstructionIssues.length === 0 ? true : false,
reconstructionIssues,
};
}
/**
@@ -116,14 +120,12 @@ function isSpacingUniform(instances, datasetIs4D) {
// If spacing is on a uniform grid but we are missing frames,
// Allow reconstruction, but pass back the number of missing frames.
if (n > 2) {
const lastIpp = instances[n - 1].getData().metadata
.ImagePositionPatient;
const lastIpp = instances[n - 1].getData().metadata.ImagePositionPatient;
// We can't reconstruct if we are missing ImagePositionPatient values
if (firstImagePositionPatient && lastIpp) {
const averageSpacingBetweenFrames =
_getPerpendicularDistance(firstImagePositionPatient, lastIpp) /
(n - 1);
_getPerpendicularDistance(firstImagePositionPatient, lastIpp) / (n - 1);
let previousImagePositionPatient = firstImagePositionPatient;
@@ -136,7 +138,7 @@ function isSpacingUniform(instances, datasetIs4D) {
previousImagePositionPatient
);
if (datasetIs4D && spacingBetweenFrames < 1.e-3) {
if (datasetIs4D && spacingBetweenFrames < 1e-3) {
// the dataset is 4D, if the distance is zero, means that we are
// checking the 4th dimension. Do not return, since we want still to
// check the 3rd dimension spacing.
@@ -164,10 +166,13 @@ function isSpacingUniform(instances, datasetIs4D) {
}
}
return { isUniform: reconstructionIssues.length === 0 ? true : false, missingFrames, reconstructionIssues };
return {
isUniform: reconstructionIssues.length === 0 ? true : false,
missingFrames,
reconstructionIssues,
};
}
/**
* Check if 4D dataset.
*
@@ -181,7 +186,7 @@ function isSpacingUniform(instances, datasetIs4D) {
*
* @returns {boolean} dataset4D value.
*/
function _isDataset4D(instances) {
function _isDataset4D(instances) {
const n = instances.length;
for (let ii = 0; ii < n; ++ii) {
const instanceMetadataControl = instances[ii].getData().metadata;
@@ -204,7 +209,12 @@ function isSpacingUniform(instances, datasetIs4D) {
continue;
}
if (_isSameArray(instanceMetadataControl.ImagePositionPatient, instanceMetadata.ImagePositionPatient)) {
if (
_isSameArray(
instanceMetadataControl.ImagePositionPatient,
instanceMetadata.ImagePositionPatient
)
) {
return true;
}
}
@@ -265,11 +275,11 @@ function _getSpacingIssue(spacing, averageSpacing) {
function _getPerpendicularDistance(a, b) {
return Math.sqrt(
Math.pow(a[0] - b[0], 2) +
Math.pow(a[1] - b[1], 2) +
Math.pow(a[2] - b[2], 2)
Math.pow(a[1] - b[1], 2) +
Math.pow(a[2] - b[2], 2)
);
}
const constructableModalities = ['MR', 'CT', 'PT', 'NM'];
export {isDisplaySetReconstructable, isSpacingUniform};
export { isDisplaySetReconstructable, isSpacingUniform };
@@ -49,7 +49,12 @@ import studyMetadataManager from './studyMetadataManager';
* @param {object} snackbar
* @returns void
*/
async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, logger, snackbar) {
async function loadAndCacheDerivedDisplaySets(
referencedDisplaySet,
studies,
logger,
snackbar
) {
const { StudyInstanceUID, SeriesInstanceUID } = referencedDisplaySet;
const promises = [];
const studyMetadata = studyMetadataManager.get(StudyInstanceUID);
@@ -80,60 +85,111 @@ async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, log
});
// For each type, see if any are loaded, if not load the most recent.
await Promise.all(Object.keys(displaySetsPerModality).map(async (key) => {
const displaySets = displaySetsPerModality[key];
await Promise.all(
Object.keys(displaySetsPerModality).map(async key => {
const displaySets = displaySetsPerModality[key];
const isLoaded = displaySets.some(displaySet => displaySet.isLoaded);
if (isLoaded) {
return;
}
if (displaySets.some(displaySet => displaySet.loadError)) {
return;
}
// find most recent and load it.
let recentDateTime = 0;
let recentDisplaySet = displaySets[0];
displaySets.forEach(displaySet => {
const dateTime = Number(
`${displaySet.SeriesDate}${displaySet.SeriesTime}`
);
if (dateTime > recentDateTime) {
recentDateTime = dateTime;
recentDisplaySet = displaySet;
const isLoaded = displaySets.some(displaySet => displaySet.isLoaded);
if (isLoaded) {
return;
}
});
try {
if (recentDisplaySet.hasOwnProperty('getSourceDisplaySet') &&
typeof recentDisplaySet.getSourceDisplaySet === 'function') {
await recentDisplaySet.getSourceDisplaySet(studies);
} else {
await recentDisplaySet.load(referencedDisplaySet, studies);
if (displaySets.some(displaySet => displaySet.loadError)) {
return;
}
} catch (error) {
recentDisplaySet.isLoaded = false;
recentDisplaySet.loadError = true;
logger.error({ error, message: error.message });
snackbar.show({
title: 'Error loading derived display set:',
message: error.message,
type: 'error',
error,
autoClose: false,
// find most recent and load it.
let recentDateTime = 0;
let recentDisplaySet = displaySets[0];
displaySets.forEach(displaySet => {
const dateTime = Number(
`${displaySet.SeriesDate}${displaySet.SeriesTime}`
);
if (dateTime > recentDateTime) {
recentDateTime = dateTime;
recentDisplaySet = displaySet;
}
});
}
}));
try {
if (
recentDisplaySet.hasOwnProperty('getSourceDisplaySet') &&
typeof recentDisplaySet.getSourceDisplaySet === 'function'
) {
if (recentDisplaySet.Modality === 'SEG' && logger) {
const onDisplaySetLoadFailureHandler = error => {
logger.error({ error, message: error.message });
snackbar.show({
title: 'DICOM Segmentation Loader',
message: error.message,
type: 'error',
autoClose: true,
});
};
let activatedLabelmapIndex = -1;
while (activatedLabelmapIndex == -1) {
const {
referencedDisplaySet,
activatedLabelmapPromise,
} = await recentDisplaySet.getSourceDisplaySet(
studies,
true,
onDisplaySetLoadFailureHandler
);
activatedLabelmapIndex = await activatedLabelmapPromise;
const selectionFired = new CustomEvent(
'extensiondicomsegmentationsegselected',
{
detail: { activatedLabelmapIndex: activatedLabelmapIndex },
}
);
document.dispatchEvent(selectionFired);
const lastDateTime = Number(
`${recentDisplaySet.SeriesDate}${recentDisplaySet.SeriesTime}`
);
recentDateTime = 0;
displaySets.forEach(displaySet => {
const dateTime = Number(
`${displaySet.SeriesDate}${displaySet.SeriesTime}`
);
if (dateTime > recentDateTime && dateTime < lastDateTime) {
recentDateTime = dateTime;
recentDisplaySet = displaySet;
}
});
}
} else {
await recentDisplaySet.getSourceDisplaySet(studies);
}
} else {
await recentDisplaySet.load(referencedDisplaySet, studies);
}
} catch (error) {
recentDisplaySet.isLoaded = false;
recentDisplaySet.loadError = true;
logger.error({ error, message: error.message });
snackbar.show({
title: 'Error loading derived display set:',
message: error.message,
type: 'error',
error,
autoClose: false,
});
}
})
);
/*
* TODO: Improve the way we notify parts of the app
* that depends on derived display sets to be loaded.
* (Implement pubsub for better tracking of derived display sets)
*/
* TODO: Improve the way we notify parts of the app
* that depends on derived display sets to be loaded.
* (Implement pubsub for better tracking of derived display sets)
*/
const event = new CustomEvent('deriveddisplaysetsloadedandcached');
document.dispatchEvent(event);
};
}
export default loadAndCacheDerivedDisplaySets;
@@ -113,7 +113,7 @@ const _paletteColorCache = {
};
function _getPaletteColor(server, paletteColorLookupTableData, lutDescriptor) {
const numLutEntries = lutDescriptor[0];
const numLutEntries = lutDescriptor[0] ? lutDescriptor[0] : 65536;
const bits = lutDescriptor[2];
const arrayBufferToPaletteColorLUT = arraybuffer => {
@@ -0,0 +1,200 @@
import { sopClassDictionary } from './sopClassDictionary';
import { isImage } from './isImage';
/**
* Naturalize SOP Class UID which do not have image data
* @param {string} SOPClassUID - SOP Class UID to be converted
* @returns {string} - human readable name
*/
export const naturalizeSOPClassUID = SOPClassUID => {
let naturalizedName = '';
if (!SOPClassUID) return naturalizedName;
if (!isImage) return naturalizedName;
if (sopClassDictionary.MRSpectroscopyStorage === SOPClassUID) {
naturalizedName = 'MRSpectroscopy';
} else if (sopClassDictionary.EnhancedUSVolumeStorage === SOPClassUID) {
naturalizedName = 'EnhancedUSVolume';
} else if (sopClassDictionary.Sop12LeadECGWaveformStorage === SOPClassUID) {
naturalizedName = 'Sop12LeadECGWaveform';
} else if (sopClassDictionary.GeneralECGWaveformStorage === SOPClassUID) {
naturalizedName = 'GeneralECGWaveform';
} else if (sopClassDictionary.AmbulatoryECGWaveformStorage === SOPClassUID) {
naturalizedName = 'AECAmbulatoryECGWaveformGW';
} else if (sopClassDictionary.HemodynamicWaveformStorage === SOPClassUID) {
naturalizedName = 'HemodynamicWaveform';
} else if (
sopClassDictionary.CardiacElectrophysiologyWaveformStorage === SOPClassUID
) {
naturalizedName = 'CardiacElectrophysiologyWaveform';
} else if (
sopClassDictionary.BasicVoiceAudioWaveformStorage === SOPClassUID
) {
naturalizedName = 'BasicVoiceAudioWaveform';
} else if (sopClassDictionary.GeneralAudioWaveformStorage === SOPClassUID) {
naturalizedName = 'GGeneralAudioWaveformAW';
} else if (sopClassDictionary.ArterialPulseWaveformStorage === SOPClassUID) {
naturalizedName = 'APArterialPulseWaveformW';
} else if (sopClassDictionary.RespiratoryWaveformStorage === SOPClassUID) {
naturalizedName = 'RespiratoryWaveform';
} else if (
sopClassDictionary.GrayscaleSoftcopyPresentationStateStorage === SOPClassUID
) {
naturalizedName = 'GrayscaleSoftcopyPresentationState';
} else if (
sopClassDictionary.ColorSoftcopyPresentationStateStorage === SOPClassUID
) {
naturalizedName = 'ColorSoftcopyPresentationState';
} else if (
sopClassDictionary.PseudoColorSoftcopyPresentationStateStorage ===
SOPClassUID
) {
naturalizedName = 'PseudoColorSoftcopyPresentationState';
} else if (
sopClassDictionary.BlendingSoftcopyPresentationStateStorage === SOPClassUID
) {
naturalizedName = 'BlendingSoftcopyPresentationState';
} else if (
sopClassDictionary.XAXRFGrayscaleSoftcopyPresentationStateStorage ===
SOPClassUID
) {
naturalizedName = 'XAXRFGrayscaleSoftcopyPresentationState';
} else if (sopClassDictionary.RawDataStorage === SOPClassUID) {
naturalizedName = 'RawData';
} else if (sopClassDictionary.SpatialRegistrationStorage === SOPClassUID) {
naturalizedName = 'SpatialRegistration';
} else if (sopClassDictionary.SpatialFiducialsStorage === SOPClassUID) {
naturalizedName = 'SpatialFiducials';
} else if (
sopClassDictionary.DeformableSpatialRegistrationStorage === SOPClassUID
) {
naturalizedName = 'DeformableSpatialRegistration';
} else if (sopClassDictionary.SegmentationStorage === SOPClassUID) {
naturalizedName = 'SEG';
} else if (sopClassDictionary.SurfaceSegmentationStorage === SOPClassUID) {
naturalizedName = 'SurfaceSEG';
} else if (sopClassDictionary.RealWorldValueMappingStorage === SOPClassUID) {
naturalizedName = 'RealWorldValueMapping';
} else if (sopClassDictionary.SurfaceScanMeshStorage === SOPClassUID) {
naturalizedName = 'SurfaceScanMesh';
} else if (sopClassDictionary.SurfaceScanPointCloudStorage === SOPClassUID) {
naturalizedName = 'SurfaceScanPointCloud';
} else if (
sopClassDictionary.StereometricRelationshipStorage === SOPClassUID
) {
naturalizedName = 'StereometricRelationship';
} else if (sopClassDictionary.LensometryMeasurementsStorage === SOPClassUID) {
naturalizedName = 'LensometryMeasurements';
} else if (
sopClassDictionary.AutorefractionMeasurementsStorage === SOPClassUID
) {
naturalizedName = 'AutorefractionMeasurements';
} else if (
sopClassDictionary.KeratometryMeasurementsStorage === SOPClassUID
) {
naturalizedName = 'KeratometryMeasurements';
} else if (
sopClassDictionary.SubjectiveRefractionMeasurementsStorage === SOPClassUID
) {
naturalizedName = 'SubjectiveRefractionMeasurements';
} else if (
sopClassDictionary.VisualAcuityMeasurementsStorage === SOPClassUID
) {
naturalizedName = 'VisualAcuityMeasurements';
} else if (
sopClassDictionary.SpectaclePrescriptionReportStorage === SOPClassUID
) {
naturalizedName = 'SpectaclePrescriptionReport';
} else if (
sopClassDictionary.OphthalmicAxialMeasurementsStorage === SOPClassUID
) {
naturalizedName = 'OphthalmicAxialMeasurements';
} else if (
sopClassDictionary.IntraocularLensCalculationsStorage === SOPClassUID
) {
naturalizedName = 'IntraocularLensCalculations';
} else if (
sopClassDictionary.MacularGridThicknessandVolumeReport === SOPClassUID
) {
naturalizedName = 'MacularGridThicknessandVolume';
} else if (
sopClassDictionary.OphthalmicVisualFieldStaticPerimetryMeasurementsStorage ===
SOPClassUID
) {
naturalizedName = 'OphthalmicVisualFieldStaticPerimetryMeasurements';
} else if (sopClassDictionary.OphthalmicThicknessMapStorage === SOPClassUID) {
naturalizedName = 'OphthalmicThicknessMap';
} else if (sopClassDictionary.CornealTopographyMapStorage === SOPClassUID) {
naturalizedName = 'CornealTopographyMap';
} else if (sopClassDictionary.BasicTextSR === SOPClassUID) {
naturalizedName = 'BasicTextSR';
} else if (sopClassDictionary.EnhancedSR === SOPClassUID) {
naturalizedName = 'EnhancedSR';
} else if (sopClassDictionary.ComprehensiveSR === SOPClassUID) {
naturalizedName = 'ComprehensiveSR';
} else if (sopClassDictionary.Comprehensive3DSR === SOPClassUID) {
naturalizedName = 'Comprehensive3DSR';
} else if (sopClassDictionary.ProcedureLog === SOPClassUID) {
naturalizedName = 'ProcedureLog';
} else if (sopClassDictionary.MammographyCADSR === SOPClassUID) {
naturalizedName = 'MammographyCADSR';
} else if (sopClassDictionary.KeyObjectSelection === SOPClassUID) {
naturalizedName = 'KeyObject';
} else if (sopClassDictionary.ChestCADSR === SOPClassUID) {
naturalizedName = 'ChestCADSR';
} else if (sopClassDictionary.XRayRadiationDoseSR === SOPClassUID) {
naturalizedName = 'XRayRadiationDoseSR';
} else if (
sopClassDictionary.RadiopharmaceuticalRadiationDoseSR === SOPClassUID
) {
naturalizedName = 'RadiopharmaceuticalRadiationDoseSR';
} else if (sopClassDictionary.ColonCADSR === SOPClassUID) {
naturalizedName = 'ColonCADSR';
} else if (
sopClassDictionary.ImplantationPlanSRDocumentStorage === SOPClassUID
) {
naturalizedName = 'ImplantationPlanSRDocument';
} else if (sopClassDictionary.EncapsulatedPDFStorage === SOPClassUID) {
naturalizedName = 'EncapsulatedPDF';
} else if (sopClassDictionary.EncapsulatedCDAStorage === SOPClassUID) {
naturalizedName = 'EncapsulatedCDA';
} else if (sopClassDictionary.BasicStructuredDisplayStorage === SOPClassUID) {
naturalizedName = 'BasicStructuredDisplay';
} else if (sopClassDictionary.RTDoseStorage === SOPClassUID) {
naturalizedName = 'RTDose';
} else if (sopClassDictionary.RTStructureSetStorage === SOPClassUID) {
naturalizedName = 'RTStructureSet';
} else if (sopClassDictionary.RTBeamsTreatmentRecordStorage === SOPClassUID) {
naturalizedName = 'RTBeamsTreatmentRecord';
} else if (sopClassDictionary.RTPlanStorage === SOPClassUID) {
naturalizedName = 'RTPlan';
} else if (
sopClassDictionary.RTBrachyTreatmentRecordStorage === SOPClassUID
) {
naturalizedName = 'RTBrachyTreatmentRecord';
} else if (
sopClassDictionary.RTTreatmentSummaryRecordStorage === SOPClassUID
) {
naturalizedName = 'RTTreatmentSummaryRecord';
} else if (sopClassDictionary.RTIonPlanStorage === SOPClassUID) {
naturalizedName = 'RTIonPlan';
} else if (
sopClassDictionary.RTIonBeamsTreatmentRecordStorage === SOPClassUID
) {
naturalizedName = 'RTIonBeamsTreatmentRecord';
} else if (
sopClassDictionary.RTBeamsDeliveryInstructionStorage === SOPClassUID
) {
naturalizedName = 'RTBeamsDeliveryInstruction';
} else if (sopClassDictionary.GenericImplantTemplateStorage === SOPClassUID) {
naturalizedName = 'GenericImplantTemplate';
} else if (
sopClassDictionary.ImplantAssemblyTemplateStorage === SOPClassUID
) {
naturalizedName = 'ImplantAssemblyTemplate';
} else if (sopClassDictionary.ImplantTemplateGroupStorage === SOPClassUID) {
naturalizedName = 'ImplantTemplateGroup';
}
return naturalizedName;
};
-3
View File
@@ -1,8 +1,5 @@
####
##
## We need to pin WebPack's version for docz to work. See this issue:
## https://github.com/pedronauck/docz/issues/704#issuecomment-480295032
##
## react-scripts checks that dependency versions match before running
## Our top level webpack version causes the preflight check to fail
## This prevents that check
+51
View File
@@ -3,6 +3,57 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [1.10.10](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.9...@ohif/ui@1.10.10) (2022-08-24)
**Note:** Version bump only for package @ohif/ui
## [1.10.9](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.8...@ohif/ui@1.10.9) (2022-06-29)
**Note:** Version bump only for package @ohif/ui
## [1.10.8](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.7...@ohif/ui@1.10.8) (2022-04-06)
**Note:** Version bump only for package @ohif/ui
## [1.10.7](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.6...@ohif/ui@1.10.7) (2022-03-14)
### Bug Fixes
* remove docz + node version fix on docker ([#2743](https://github.com/OHIF/Viewers/issues/2743)) ([7164d1a](https://github.com/OHIF/Viewers/commit/7164d1a654571af99c22d2684e56cbdde05b2222))
## [1.10.6](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.5...@ohif/ui@1.10.6) (2022-02-03)
**Note:** Version bump only for package @ohif/ui
## [1.10.5](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.4...@ohif/ui@1.10.5) (2021-11-30)
**Note:** Version bump only for package @ohif/ui
## [1.10.4](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.3...@ohif/ui@1.10.4) (2021-10-26)
**Note:** Version bump only for package @ohif/ui
-75
View File
@@ -1,75 +0,0 @@
/**
* Docz Configuration File:
* https://www.docz.site/docs/project-configuration
*/
import { css } from "docz-plugin-css";
export default {
dest: "example/build",
public: "/public",
wrapper: "src/__docs__/wrapper",
indexHtml: "src/__docs__/index.html",
// Limited support for importing `.styl` files
codeSandbox: false,
// https://github.com/pedronauck/docz/pull/849/files
// Because we re-export using `index.js` files
notUseSpecifiers: true,
menu: [
"Introduction",
"Getting Started",
{ name: "Elements", menu: ["Form / Select"] },
{
name: "Components",
menu: [
"CINE Dialog",
"Layout Button",
"Measurement Table",
"Overlay Trigger",
"Quick Switch",
"Rounded Button Group",
"Select Tree",
"Simple Dialog",
"Study Browser",
"Study List",
"Table List",
"Toolbar Section",
"About Modal",
"User Preferences Modal"
]
},
"Styling & Theming",
"Translating",
"Compatibility"
],
// Rollup Aliases?
// https://github.com/pedronauck/docz/issues/373
plugins: [
// CSS
css(),
// Stylus
css({
preprocessor: "stylus",
cssmodules: false
})
],
// `docz` uses file-loader to pull in SVGs. This kills our icons before
// They can be picked up by our `babel-plugin-inline-react-svg` dependency
// You can see where it's configured here:
// https://github.com/pedronauck/docz/blob/f72624d0aa5231dab17e1770e8d36be920f590a2/core/docz-core/src/bundler/loaders.ts#L135-L144
// How we delete our rule:
// https://github.com/neutrinojs/webpack-chain/issues/48
onCreateWebpackChain: config => {
config.module.rules.delete("svg");
},
modifyBabelRc: babelrc => {
const newBabelRc = {
...babelrc,
plugins: [
...babelrc.plugins,
require.resolve("babel-plugin-inline-react-svg")
]
};
return newBabelRc;
}
};
-25
View File
@@ -1,25 +0,0 @@
const path = require('path');
// ~~ Plugins
const PnpWebpackPlugin = require(`pnp-webpack-plugin`); // Required until Webpack@5
exports.onCreateWebpackConfig = args => {
args.actions.setWebpackConfig({
node: { fs: 'empty' },
resolve: {
plugins: [PnpWebpackPlugin],
// Note the '..' in the path because docz gatsby project lives in the '.docz' directory
modules: [
// platform/ui
path.resolve(__dirname, '../node_modules'),
// .docz
'node_modules',
],
// resolve: {
// symlinks: true,
// },
},
resolveLoader: {
plugins: [PnpWebpackPlugin.moduleLoader(module)],
},
});
};
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