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Author SHA1 Message Date
ohif-bot 3452f1b91e chore(release): publish [skip ci]
- @ohif/extension-cornerstone@1.4.0
 - @ohif/extension-vtk@0.52.21
 - @ohif/core@1.6.0
 - @ohif/ui@0.57.0
 - @ohif/viewer@2.1.0
2019-10-26 02:53:05 +00:00
Romulo Bordezani 450e0981a5 feat: Snapshot Download Tool (#840)
* feat(Download ScreenShot Dialog)

- UI part of it

* feat(Download ScreenShot Dialog)

- UI part of it

* feat(Download ScreenShot Dialog)

- Missing Annotations showing controls

* feat(Download ScreenShot Dialog)

- Missing Annotations showing controls

* feat(Download ScreenShot Dialog)

- Partial Pull Request - Not ready to Prod yet.

* feat(Download ScreenShot Dialog)

  - UI - v2

* feat(Download ScreenShot Dialog)

  - UI - v3

* feat(Download ScreenShot Dialog)

  - Resizing tool

* feat(Download ScreenShot Dialog)

  - Resizing tool

* feat(Download ScreenShot Dialog)

  - Removing hardcoded CSS left

* feat(Download ScreenShot Dialog)

  - Bugfixes

* feat(Download ScreenShot Dialog)

  - Bugfixes - Escape closes the modal

* feat(Download ScreenShot Dialog)

  - Bugfixes - Responsive issues

* WIP: Refactoring DownloadDialog

* WIP: Refactoring DownloadDialog

* Align label and hide background canvas

* Add constantes and remove code not used

* Reset state on close modal

* Extract cornerstone to connect

* Fix modal zindex and add custom canvas classname

* CR Update: Add proptypes and fix useeffect warning

* CR Update: Refactor hooks, styles and imports

* CR Update: Remove important from css

* CR Update: Update core utils test of index
2019-10-25 22:46:32 -04:00
ohif-bot 8cf1e54490 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.20
 - @ohif/ui@0.56.1
 - @ohif/viewer@2.0.0
2019-10-26 02:25:52 +00:00
ladeirarodolfo 85f836cd91 fix: 🐛 Desc of meas.table not being updated on properly (#1094)
Is not possible to add Measurement Description if Relabel was not
previously selected

BREAKING CHANGE: 1013

Closes: #1013
2019-10-25 22:19:16 -04:00
Mirna Silva f5560c11b0 test: Stack Scroll, Right-click to zoom, Middle-click to Pan (#1073)
* E2E tests: Stack Scroll, Right-click to zoom, Middle-click to Pan

* About modal tests and added some cypress selectors

* Checking app version number

* Removed accidental import

* Review fixes
2019-10-25 22:14:57 -04:00
ohif-bot bef50f9298 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.19
 - @ohif/core@1.5.2
 - @ohif/viewer@1.12.2
2019-10-25 18:32:05 +00:00
Rodrigo Antinarelli 986b7ae2bf fix: set SR in ActiveViewport by clicking thumb (#1091) 2019-10-25 14:22:44 -04:00
ohif-bot 86c479ac04 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.18
 - @ohif/core@1.5.1
 - @ohif/viewer@1.12.1
2019-10-25 17:51:36 +00:00
James Petts 460e375f0a fix: 🐛 Orthographic MPR fix (#1092)
* fix: 🐛 Orthographic MPR fix
2019-10-25 19:43:34 +02:00
ohif-bot 78344c2c66 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.17
 - @ohif/core@1.5.0
 - @ohif/viewer@1.12.0
2019-10-25 13:17:26 +00:00
James Petts b451ce4407 fix: 🐛 Fix crosshairs location when using MIP (#1080) 2019-10-25 15:07:35 +02:00
ladeirarodolfo 21b586b08f feat: 🎸 Allow routes to load Google Cloud DICOM Stores in the Study List (#1069) 2019-10-25 14:49:48 +02:00
ohif-bot 3bbeb1c521 chore(release): publish [skip ci]
- @ohif/viewer@1.11.5
2019-10-24 20:23:16 +00:00
Danny Brown 7668b69f20 test: percy snapshot workaround (#1085)
* Try workaround for percy snapshot

* Return our modified document
2019-10-24 16:09:59 -04:00
Danny Brown 3a12138134 test: Try workaround for percy snapshot (#1084) 2019-10-24 15:54:06 -04:00
Danny Brown 97786b808c ci: revert flags 2019-10-23 12:55:39 -04:00
Danny Brown cd1baa1b36 ci: force flag 2019-10-23 12:41:44 -04:00
Danny Brown 3ae3bee452 ci: test recursive removal 2019-10-23 12:24:56 -04:00
ohif-bot fd017c4512 chore(release): publish [skip ci]
- @ohif/viewer@1.11.4
2019-10-23 15:37:56 +00:00
Danny Brown c680720ce5 fix: Revert "Revert "fix: MPR initialization"" (#1065)
* Revert "Revert "fix: MPR initialization (#1062)" (#1064)"

This reverts commit a6c1e6c717.

* fix: MPR Initialization

* fix e2e openStudy

* add isRequired for numRows and numColumns
2019-10-23 11:27:22 -04:00
ohif-bot dfc4e89a91 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.16
 - @ohif/viewer@1.11.3
2019-10-23 10:44:45 +00:00
James Petts 13d337aaab fix: 🐛 Switch to orhtographic view for 2D MPR (#1074) 2019-10-23 12:36:41 +02:00
ohif-bot 4f26940005 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.15
 - @ohif/viewer@1.11.2
2019-10-23 07:56:28 +00:00
James Petts 9d08e81aa5 perf: ⚡️ Throttle UI refresh of synced WL value in vtk port (#1070) 2019-10-23 09:45:26 +02:00
ohif-bot 1a539d04c2 chore(release): publish [skip ci]
- @ohif/viewer@1.11.1
2019-10-23 01:12:25 +00:00
Rodrigo Antinarelli 5cc78c867f test: E2E Intermittent Failures (#1071) 2019-10-22 21:04:07 -04:00
ohif-bot cefa480979 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.14
 - @ohif/ui@0.56.0
 - @ohif/viewer@1.11.0
2019-10-22 20:24:10 +00:00
Danny Brown 66537bf1b9 ci: specify our custom executor
fixes broken build
2019-10-22 16:15:09 -04:00
Danny Brown 862d426c71 ci: first attempt at adding a gated docker PR Publish (#1038) (#1041)
* ci: first attempt at adding a gated docker PR Publish (#1038)

* ci: first attempt at adding a gated docker PR Publish

* See if we can use contexts to inject variables after approval

* fix build command

* try alternative context

* docs: pull request template that spells out PR checklist

* change context back to Docker Hub

* Switch optional approval to another workflow

* Make docker builds faster

* Update .github/PULL_REQUEST_TEMPLATE/pull_request_template.md
2019-10-22 15:53:44 -04:00
ladeirarodolfo e62f403fe9 feat: 🎸 Load spinner when selecting gcloud store. Add key on td (#1034)
* feat: 🎸 Load spinner when selecting gcloud store. Add key on td

* feat: 🎸 Code review. Translate loading study status

* feat: 🎸 Code review. Minor code refactoring

* fix: add missing study and index declerations

* test: Improviment on VTK beforeEach hook (#1057)

* feat: 🎸 Some improvements on table cell and react lifecycle

* feat: 🎸 Prevent component update on a not searchData changing

* feat: 🎸 Some cypress improv to pass ci

* feat: 🎸 Code reviewe and also fixing list for gcloud

* feat: 🎸 Code review. Add spinner on first load of store

* feat: 🎸 Code review. Centering loading list spinner icon
2019-10-22 14:40:23 -04:00
Mirna Silva dea0ceab57 test: Adding Percy Snapshot on VTK, PDF and Microscopy tests (#1059)
* Adding Percy Snapshot on VTK, PDF and Microscopy tests

* Small improvement to always click on first search result

* Wait for search result

* Added timouts all over the code to avoid intermitted failures in CI

* Increasing Default Timeout and other configs

* Cleaning up the code

* try force enabling gpu

* Try custom executor with newer version of chrome

* Fix based on review comments

* Increased minimum thumbnails expected on VTK test

* Fix config validation

* Make sure we're using the chrome browser
2019-10-21 14:30:50 -04:00
Danny Brown a6c1e6c717 Revert "fix: MPR initialization (#1062)" (#1064)
This reverts commit b03739428f.
2019-10-19 17:00:51 -04:00
Rodrigo Antinarelli b03739428f fix: MPR initialization (#1062)
* fix: MPR initialization

* small refactoring
2019-10-18 14:29:00 -04:00
ohif-bot 2a52d9f05d chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.13
 - @ohif/viewer@1.10.3
2019-10-18 14:02:07 +00:00
James Petts d5e21bb5bb * chore: 🤖 Update react-vtkjs-viewport and refactor vtk extension
* chore: 🤖 Update react-vtkjs-viewport and refactor vtk extension
2019-10-18 15:53:43 +02:00
ohif-bot 04ffe3ec76 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.12
 - @ohif/viewer@1.10.2
2019-10-18 10:16:06 +00:00
James Petts 9cdf8b690b * feat: 🎸 Progressive volume loading for vtk viewport (#1055)
* feat: 🎸 Progressive volume loading for vtk viewport

Adds progressive volume loading for vtkjs viewport whilst the frames are
streamed from PACs and rebuilt in the volume.

Closes: closes #1051

* Update to react-vtkjs-viewport 0.3.0
2019-10-18 11:43:23 +02:00
Mirna Silva 8d49b31d03 test: Improviment on VTK beforeEach hook (#1057) 2019-10-16 15:59:50 -04:00
Danny Brown e4cfae7ad9 docs: add percy badge to readme 2019-10-16 11:51:45 -04:00
ohif-bot e53041f630 chore(release): publish [skip ci]
- @ohif/viewer@1.10.1
2019-10-16 15:46:46 +00:00
Mirna Silva 35c54eac56 test: Test cases for extensions: VTK, HTML and PDF (#1036)
* Test cases for extensions: VTK, HTML and PDF

* Test Cases: Delete measurement, Relabel and Description through Contextmenu

* Fix: PDF, HTML and VTK extensions

* CI: running into different folders for PWA and Script-tag tests

* CI: running into different folders for PWA and Script-tag tests

* CI: running into different folders for PWA and Script-tag tests

* Fix for VTK tests and Cornerstone Eraser tool

* Removed VTK alias from Cornerstone aliases initialization

* Temporary fix for Eraser tool

* Test workaround

* Use juno for vtk

* Shift VTK tests to PWA folder
2019-10-16 11:39:41 -04:00
ohif-bot e7be573328 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.11
 - @ohif/i18n@0.51.0
 - @ohif/ui@0.55.0
 - @ohif/viewer@1.10.0
2019-10-15 18:59:20 +00:00
Danny Brown 8a7706b286 test: percy visual testing (#1053)
* test: percy visual testing init

* Try PR checks with custom command

* Only run percy visual tests for PWA on merge for now
2019-10-15 14:52:23 -04:00
Rodrigo Antinarelli c217b8bbde feat: Add browser info and app version (#1046)
* feat: Add browser info and app version

* quick fix

* lock file

* add build_num

* add screenshot e2e test

* quick test build_num

* revert header

* include i18n texts
2019-10-15 13:09:14 -04:00
ohif-bot 74f3cbc4b2 chore(release): publish [skip ci]
- @ohif/viewer@1.9.1
2019-10-15 16:10:17 +00:00
James Petts d091cd604c fix: 🐛 Remove debugger statement left in from last PR (#1052) 2019-10-15 18:03:29 +02:00
ohif-bot 3a4280163d chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.10
 - @ohif/core@1.4.0
 - @ohif/viewer@1.9.0
2019-10-15 15:18:15 +00:00
James Petts 2d75e01ea0 feat: 🎸 Only allow reconstruction of datasets that make sense (#1010)
* feat: 🎸 Only allow reconstruction of datasets that make sense

Only allow reconstruction of datasets which are imaging data, that have
frames in the same orientation, with the same size and make sense to be
reconstructed in 3D.

Closes: #561
2019-10-15 17:08:53 +02:00
Danny Brown 5c5a49486d docs: more specific location for build output 2019-10-15 08:56:54 -04:00
ohif-bot a8a57132a7 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.9
 - @ohif/ui@0.54.0
 - @ohif/viewer@1.8.0
2019-10-14 15:46:13 +00:00
Rodrigo Antinarelli 92c8996ed4 feat: Notification Service (#1011)
* WIP - Notification Service

* add snackbar provider into the main App component

* feat: Notification Service

* revert unmodified file

* Update DicomHtmlViewport.js

* update css classnames

* revert toolbarRow

* fix revert toolbarRow

* styles adjustments and hide method

* remove unecessary default options

* minor fixes

* fix long truncated messages

* move SnackbarContext to ui project, rename, export
2019-10-14 11:39:31 -04:00
ohif-bot f07dca5fa4 chore(release): publish [skip ci]
- @ohif/viewer@1.7.0
2019-10-14 12:50:19 +00:00
Karthik Rao c99e0d8a23 feat: Implement a 'Exit 2D MPR' button in the toolbar
* feat: Implement a 'Exit 2D MPR' button in the toolbar to act as a toggle when '2D MPR' button is clicked

* Move logic to exit MPR and toggling into ConnectedPluginSwitch and PluginSwitch. Also, discard the ConnectedExitPluginSwitch and ExitPluginSwitch components.

* Update ToolbarRow.js
2019-10-14 08:41:29 -04:00
ohif-bot 84144bc3ef chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.8
 - @ohif/core@1.3.2
 - @ohif/viewer@1.6.3
2019-10-14 11:15:08 +00:00
Erik Ziegler 5cbdd0c616 ci: Skip copying URL to clipboard on headless CI servers (#1043) 2019-10-14 13:08:59 +02:00
Chris McGee fc015326c7 fix: Return display sets in StudyMetadata._createDisplaySetsForSeries (#1042) 2019-10-13 20:53:01 -04:00
ohif-bot 01860b6094 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.7
 - @ohif/core@1.3.1
 - @ohif/ui@0.53.4
 - @ohif/viewer@1.6.2
2019-10-11 18:56:39 +00:00
Danny Brown cfdf827ff0 ci: fix broken build (#1033) 2019-10-11 14:50:12 -04:00
Danny Brown ceb6837153 ci: speed up script tag e2e tests (#1032)
* show package bundle progress

* Ability to run "quick builds" for faster feedback on status checks (e2e)

* ci: speed up PR checks

* specify quick build value
2019-10-11 14:26:24 -04:00
Danny Brown b01b0108b0 refactor: layout manager to viewer (#1026)
* docs: formatting

* Prefer numRows and numColumns to percentage width/height for layout

* fix: LayoutManager --> ViewportGrid (get out of UI component library)

* docs: remove outdated docs

* Don't expose ExampleDropTarget

* Revert thumnail entry drag source removal

* Update screaming tests

* fix drag-n-drop

* fix vtk mpr2d CC: @jamesapetts

* remove setSingleLayoutData

* remove vtk qualifier
2019-10-11 12:03:59 -04:00
Erik Ziegler d6862e7418 ci: Set cache key to only use yarn.lock checksum (#1031)
* ci: Set cache key to only use yarn.lock checksum

* Use increasingly general pattern for restoring the cache

* Avoid running script tag e2e tests twice

* Performance improvements for CI

* Valid YAML

* Valid YAML?

* Valid YAML!!!!

* Update Node image, update yarn version

* circle

* serve
2019-10-11 11:40:21 -04:00
ohif-bot beb7083e55 chore(release): publish [skip ci]
- @ohif/viewer@1.6.1
2019-10-11 13:13:57 +00:00
Erik Ziegler 412fe4e23f fix: Switch token storage back to localStorage because in-memory was annoying for end users (#1030) 2019-10-11 14:53:49 +02:00
ohif-bot 659649e10b chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.6
 - @ohif/core@1.3.0
 - @ohif/viewer@1.6.0
2019-10-11 09:32:51 +00:00
Erik Ziegler f431b277dd ci: Disable docker layer caching because CircleCI doesn't let open source plans use it (#1028) 2019-10-11 11:14:54 +02:00
ladeirarodolfo 2bc361cdca feat: 🎸 Improve usability of Google Cloud adapter, including direct routes to studies (#989) 2019-10-11 09:59:38 +02:00
Erik Ziegler c6f306c0de Revert "ci: Disable docker layer caching because CircleCI doesn't let open source plans use it"
This reverts commit c0ea27f6b3.
2019-10-11 08:52:07 +02:00
Erik Ziegler c0ea27f6b3 ci: Disable docker layer caching because CircleCI doesn't let open source plans use it 2019-10-11 08:45:02 +02:00
ohif-bot df8d4029f1 chore(release): publish [skip ci]
- @ohif/viewer@1.5.4
2019-10-10 20:07:32 +00:00
Mirna Silva a36cb63926 tests: Test cases implemented: Cornerstone tools Clear and Eraser; Measurement panel Relabel and Description (#1014)
* Fix for test scripts that were failing in CI

* Test cases for tools: Length and Angle

* Test cases implemented: Scroll series, Levels, Pan, Reset, Zoom

* Added test cases for tools: Cine, More, Layout, Invert, Rotate, FlipH, FlipV

* Fixes made according to comments on PR review

* Fixes for failing scenarios: Layout and Cine

* Test cases implemented: Cornerstone tools Clear and Eraser; Measurement panel Relabel and Description

* Fix for CI failure
2019-10-10 15:46:41 -04:00
ohif-bot e51529e6c9 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.5
 - @ohif/viewer@1.5.3
2019-10-10 16:57:21 +00:00
James Petts 750a150644 Merge pull request #1025 from JamesAPetts/vtkjsViewportPerformance
perf: ⚡️ Update react-vtkjs-viewport for performance improvement
2019-10-10 18:37:34 +02:00
James A. Petts a9d28d85da Merge remote-tracking branch 'upstream/master' into vtkjsViewportPerformance 2019-10-10 18:02:08 +02:00
James A. Petts 6ee5094cbe perf: ⚡️ Update react-vtkjs-viewport for performance improvement 2019-10-10 17:57:53 +02:00
ohif-bot 6bfb9bb140 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.4
 - @ohif/ui@0.53.3
 - @ohif/viewer@1.5.2
2019-10-10 02:41:15 +00:00
Danny Brown db5b760432 ci: skip minimize flag (#1023)
* Better css chunk filenames depending on context

* skip minimize flag to speed up builds that are timing out (short-term fix)

* make sure our custom TerserJS config is actually applied

* Use SKIP_MINIMIZE flag for netlify and demo builds
2019-10-09 22:18:06 -04:00
Igor Octaviano e7de8be2d8 fix: 🎸 switch ohif logo from text + font to SVG (#1021)
currently we are using font + text, not it was changed to use svg
instead

Closes: 723
2019-10-09 22:15:53 -04:00
ohif-bot cb2088daf7 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@1.3.1
 - @ohif/extension-vtk@0.52.3
 - @ohif/ui@0.53.2
 - @ohif/viewer@1.5.1
2019-10-09 19:55:40 +00:00
Igor Octaviano 2a743554b6 fix: 🐛 set current viewport as active when switching layouts (#1018)
* fix: 🐛 set current viewport as active when switching layouts

check if current viewport index is less than the current layout lenght
and set 0 if so or keep current selected cell index as active viewport

Closes: 999

* chore: 🤖 commenting out docker layer caching in the short-term

commenting out docker layer caching in the short-term

* refactor: 💡 refactor layout matrix index conditional
2019-10-09 15:37:26 -04:00
Igor Octaviano a28984ef1f fix: 🐛 set tools bidirectional, eraser and annotate command (#1020)
annotate, bidirectional and eraser had types as command but they should
be typed as setToolActive

Closes: 981
2019-10-09 15:30:00 -04:00
Rodrigo Antinarelli 95e5e11d09 test: E2E Tests - Thumbnail loading (#1017)
* fix: E2E Tests - Thumbnail loading

* rename data-cy attr
2019-10-09 12:57:24 -04:00
ohif-bot ff9f199850 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@1.3.0
 - @ohif/viewer@1.5.0
2019-10-09 14:45:40 +00:00
Danny Brown 1cc94f36a7 feat: Multiple fixes and implementation changes to react-cornerstone-viewport
* Update props for new react-cornerstone-viewport implementation

* Create an preRegistration hook for the cornerstone extension to setup cornerstone tools (takes configuration)

* Isolate measurements panel logic

* reorder extension registration

* remove unused setupTools

* Restore CINE connection

* fix stack prefetcher toggling

* Cleanup OHIFCornerstoneViewport props

* updated yarn lock

* bust yarn.lock to get updated react-cornerstone-viewport

* fix review comment; us isActive to better show it's influence on prefetch

* refactor: remove pass through method

* review performance optimization

* review; comment out unused variable

* shift tool under correct comment

* Use alternative csTools config, if provided

* Note regarding config options
2019-10-09 10:23:14 -04:00
ohif-bot 5c5223fcf1 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.2
 - @ohif/core@1.2.0
 - @ohif/viewer@1.4.5
2019-10-09 11:27:27 +00:00
James Petts 8513ad9ef3 perf: 🎸 Update vtk viewport for faster image reconstruction (#1016) 2019-10-09 13:13:13 +02:00
Emanuel Fiuza de Oliveira 66d8bc6d6f fix: OHIF-1002 Study lazy load should be true by default (#1004) 2019-10-07 16:31:47 -04:00
Jody Zeitler 0064a4b1cd feat: Allow a server requestOptions.auth to be a function that returns the Authorization header. (#928) 2019-10-06 21:07:44 -04:00
ohif-bot 74ce89b22b chore(release): publish [skip ci]
- @ohif/viewer@1.4.4
2019-10-07 01:07:06 +00:00
Mirna Silva c92975f555 test: Fix for test scripts that were failing in CI (#968)
* Fix for test scripts that were failing in CI
* Test cases for tools: Length and Angle
* Test cases implemented: Scroll series, Levels, Pan, Reset, Zoom
* Added test cases for tools: Cine, More, Layout, Invert, Rotate, FlipH, FlipV
* Fixes made according to comments on PR review
* Fixes for failing scenarios: Layout and Cine
2019-10-06 20:57:49 -04:00
ohif-bot ce6c0533a0 chore(release): publish [skip ci]
- @ohif/i18n@0.50.5
 - @ohif/viewer@1.4.3
2019-10-04 16:55:28 +00:00
Rodrigo Antinarelli 4df624b8c4 fix: CineDialog buttons label (#998)
* fix: CineDialog buttons label

* Revert "fix: CineDialog buttons label"

This reverts commit 48ea7a28e50b845c4939a8aaf2d95eba49d2c102.

* fix: CineDialog buttons label
2019-10-04 12:46:39 -04:00
ohif-bot e064fd353e chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.1
 - @ohif/ui@0.53.1
 - @ohif/viewer@1.4.2
2019-10-04 13:37:03 +00:00
Sanders DeNardi 458d310c78 fix: Move Series Information to Separate Row (#990)
* fix ThumbnailEntry alignment

* move series information to separate row
2019-10-04 09:26:05 -04:00
ohif-bot 73bc4d9094 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.52.0
 - @ohif/viewer@1.4.1
2019-10-03 14:05:24 +00:00
James Petts 7709ebb107 Merge pull request #993 from JamesAPetts/vtkViewportSubscriptionManager
feat: 🎸 Synced Window Leveling
2019-10-03 15:49:19 +02:00
James A. Petts 559b637290 feat: 🎸 Synced Window Leveling
Syncs window leveling for vtkjs viewports in MPR 2D mode.

Closes: #558
2019-10-03 15:29:56 +02:00
ohif-bot 36910f2b47 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.51.3
 - @ohif/core@1.1.0
 - @ohif/ui@0.53.0
 - @ohif/viewer@1.4.0
2019-10-03 08:02:00 +00:00
Emanuel Fiuza de Oliveira 9e10c2b2de feat: Use QIDO + WADO to load series metadata individually rather than the entire study metadata at once (#953) 2019-10-03 09:51:29 +02:00
ohif-bot c5cbd77cb9 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.51.2
 - @ohif/core@1.0.2
 - @ohif/viewer@1.3.3
2019-10-02 07:49:25 +00:00
Erik Ziegler b3b4c10e4c fix: Temporarily sort SEG files to the end of the display set list as a workaround for several metadata issues (#987) 2019-10-02 09:39:38 +02:00
ohif-bot 855020d730 chore(release): publish [skip ci]
- @ohif/extension-vtk@0.51.1
 - @ohif/viewer@1.3.2
2019-10-01 20:36:02 +00:00
Zaid Safadi 8503cbce4e fix(rotate): Use new MPR rotate in react-vtkjs-viewport 0.1.2 (#964) 2019-10-01 22:21:31 +02:00
ohif-bot c8667fb2d6 chore(release): publish [skip ci]
- @ohif/viewer@1.3.1
2019-10-01 10:07:08 +00:00
Erik Ziegler 674ca9f96f fix: Exit MPR mode if Layout is changed (#984) 2019-10-01 11:55:58 +02:00
175 changed files with 9020 additions and 3645 deletions

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+159 -42
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@@ -13,50 +13,111 @@ version: 2.1
##
orbs:
codecov: codecov/codecov@1.0.5
cypress: cypress-io/cypress@1.10.0
cypress: cypress-io/cypress@1.11.0
defaults: &defaults
docker:
- image: circleci/node:10.16.0
- image: circleci/node:12.9.1
environment:
TERM: xterm # Enable colors in term
working_directory: ~/repo
jobs:
CHECKOUT:
UNIT_TESTS:
<<: *defaults
steps:
# Update yarn
- run: yarn -v
#- run: rm -rf ~/.yarn && npm i -g yarn && yarn -v
# Enable yarn workspaces
- run: yarn config set workspaces-experimental true
# Checkout code and ALL Git Tags
- checkout:
post:
- git fetch --all
- restore_cache:
name: Restore Yarn and Cypress Package Cache
keys:
# when lock file changes, use increasingly general patterns to restore cache
- yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
- yarn-packages-v1-{{ .Branch }}-
- yarn-packages-v1-
- yarn-packages-{{ checksum "yarn.lock" }}
- yarn-packages-
- run:
name: Install Dependencies
command: yarn install --frozen-lockfile
- save_cache:
name: Save Yarn Package Cache
paths:
- ~/.cache ## Cache yarn and Cypress
key: yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
# Persist :+1:
- persist_to_workspace:
root: ~/repo
paths: .
key: yarn-packages-{{ checksum "yarn.lock" }}
UNIT_TESTS:
# RUN TESTS
- run:
name: 'JavaScript Test Suite'
command: yarn run test:unit:ci
# PLATFORM/VIEWER
- run:
name: 'VIEWER: Combine report output'
command: |
viewerCov="/home/circleci/repo/platform/viewer/coverage"
touch "${viewerCov}/reports"
cat "${viewerCov}/clover.xml" >> "${viewerCov}/reports"
echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
cat "${viewerCov}/lcov.info" >>"${viewerCov}/reports"
echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
- codecov/upload:
file: '/home/circleci/repo/platform/viewer/coverage/reports'
flags: 'viewer'
# PLATFORM/CORE
- run:
name: 'CORE: Combine report output'
command: |
coreCov="/home/circleci/repo/platform/core/coverage"
touch "${coreCov}/reports"
cat "${coreCov}/clover.xml" >> "${coreCov}/reports"
echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
cat "${coreCov}/lcov.info" >> "${coreCov}/reports"
echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
- codecov/upload:
file: '/home/circleci/repo/platform/core/coverage/reports'
flags: 'core'
UNIT_TESTS_PERSIST_WORKSPACE:
<<: *defaults
steps:
- attach_workspace:
at: ~/repo
# Update yarn
#- run: rm -rf ~/.yarn && npm i -g yarn && yarn -v
# Enable yarn workspaces
- run: yarn config set workspaces-experimental true
# Checkout code and ALL Git Tags
- checkout:
post:
- git fetch --all
- restore_cache:
name: Restore Yarn and Cypress Package Cache
keys:
# when lock file changes, use increasingly general patterns to restore cache
- yarn-packages-{{ checksum "yarn.lock" }}
- yarn-packages-
- run:
name: Install Dependencies
command: yarn install --frozen-lockfile
- save_cache:
name: Save Yarn Package Cache
paths:
- ~/.cache ## Cache yarn and Cypress
key: yarn-packages-{{ checksum "yarn.lock" }}
# RUN TESTS
- run:
@@ -92,7 +153,7 @@ jobs:
flags: 'core'
# Persist :+1:
- persist_to_workspace:
- persist_to_workspace: &persist_to_workspace
root: ~/repo
paths: .
@@ -137,13 +198,13 @@ jobs:
- run: chmod +x ~/repo/.circleci/build-and-publish-docs.sh
- run: ~/repo/.circleci/build-and-publish-docs.sh
DOCKER_PUBLISH:
DOCKER_MASTER_PUBLISH:
<<: *defaults
steps:
- attach_workspace:
at: ~/repo
- setup_remote_docker:
docker_layer_caching: true
docker_layer_caching: false
- run:
name: Build and push Docker image
command: |
@@ -166,6 +227,43 @@ jobs:
docker push ohif/$IMAGE_NAME:latest
fi
DOCKER_PR_PUBLISH:
<<: *defaults
steps:
# Enable yarn workspaces
- run: yarn config set workspaces-experimental true
# Checkout code and ALL Git Tags
- checkout:
post:
- git fetch --all
- restore_cache:
name: Restore Yarn and Cypress Package Cache
keys:
# when lock file changes, use increasingly general patterns to restore cache
- yarn-packages-{{ checksum "yarn.lock" }}
- yarn-packages-
- run:
name: Install Dependencies
command: yarn install --frozen-lockfile
- setup_remote_docker:
docker_layer_caching: false
- run:
name: Build and push Docker image
command: |
# Remove npm config
rm -f ./.npmrc
# Set our version number using vars
echo $CIRCLE_BUILD_NUM
# Build our image, auth, and push
docker build --tag ohif/viewer:PR_BUILD-$CIRCLE_BUILD_NUM .
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
docker push ohif/viewer:PR_BUILD-$CIRCLE_BUILD_NUM
VIEWER_DEMO_BUILD:
<<: *defaults
steps:
@@ -199,7 +297,7 @@ jobs:
- attach_workspace:
at: ~/repo
- setup_remote_docker:
docker_layer_caching: true
docker_layer_caching: false
- run:
name: Deploy latest version to viewer.ohif.org
command: |
@@ -217,29 +315,29 @@ workflows:
# PULL REQUESTS
PR_CHECKS:
jobs:
- CHECKOUT:
- UNIT_TESTS:
filters:
branches:
ignore:
- master
- feature/*
- hotfix/*
- UNIT_TESTS:
requires:
- CHECKOUT
# E2E: PWA
- cypress/run:
name: 'E2E: PWA'
executor: cypress/browsers-chrome76
browser: chrome
pre-steps:
- run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
add wait-on' # Use yarn latest
yarn: true
record: false
store_artifacts: false
working_directory: platform/viewer
build: yarn run build:e2e
start: yarn run test:e2e:dist
build: npx cross-env QUICK_BUILD=true yarn run build
start: yarn run test:e2e:serve
wait-on: 'http://localhost:3000'
cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
no-workspace: true # Don't persist workspace
post-steps:
- store_artifacts:
@@ -249,16 +347,20 @@ workflows:
# E2E: script-tag
- cypress/run:
name: 'E2E: Script Tag'
executor: cypress/browsers-chrome76
browser: chrome
pre-steps:
- run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
add wait-on' # Use yarn latest
yarn: true
record: false
store_artifacts: false
working_directory: platform/viewer
build: yarn run build:package
start: yarn run test:e2e:dist
build: npx cross-env QUICK_BUILD=true yarn run build:package
start: yarn run test:e2e:serve
spec: 'cypress/integration/common/**/*'
wait-on: 'http://localhost:3000'
cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
no-workspace: true # Don't persist workspace
post-steps:
- store_artifacts:
@@ -266,30 +368,41 @@ workflows:
requires:
- UNIT_TESTS
PR_OPTIONAL_DOCKER_PUBLISH:
jobs:
# https://circleci.com/docs/2.0/workflows/#holding-a-workflow-for-a-manual-approval
- AWAIT_APPROVAL:
type: approval
# Update hub.docker.org
- DOCKER_PR_PUBLISH:
context: Docker Hub
requires:
- AWAIT_APPROVAL
# MERGE TO MASTER
RELEASE:
jobs:
- CHECKOUT:
- UNIT_TESTS_PERSIST_WORKSPACE:
filters:
branches:
only: master
- UNIT_TESTS:
requires:
- CHECKOUT
# E2E: PWA + Persist
- cypress/run:
name: 'E2E: PWA'
executor: cypress/browsers-chrome76
browser: chrome
pre-steps:
- run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
add wait-on' # Use yarn latest
yarn: true
record: true
record: false
store_artifacts: true
working_directory: platform/viewer
build: yarn run build:e2e
start: yarn run test:e2e:dist
build: npx cross-env QUICK_BUILD=true yarn run build
start: yarn run test:e2e:serve
wait-on: 'http://localhost:3000'
cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
command: 'yarn run test:e2e:ci'
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
no-workspace: true # Don't persist workspace
post-steps:
- store_artifacts:
@@ -297,20 +410,24 @@ workflows:
- store_test_results:
path: cypress/results
requires:
- UNIT_TESTS
- UNIT_TESTS_PERSIST_WORKSPACE
# E2E: script-tag
- cypress/run:
name: 'E2E: Script Tag'
executor: cypress/browsers-chrome76
browser: chrome
pre-steps:
- run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
add wait-on' # Use yarn latest
yarn: true
record: false
store_artifacts: false
working_directory: platform/viewer
build: yarn run build:package
start: yarn run test:e2e:dist
build: npx cross-env QUICK_BUILD=true yarn run build:package
start: yarn run test:e2e:serve
spec: 'cypress/integration/common/**/*'
wait-on: 'http://localhost:3000'
cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
no-workspace: true # Don't persist workspace
post-steps:
- store_artifacts:
@@ -318,7 +435,7 @@ workflows:
- store_test_results:
path: cypress/results
requires:
- UNIT_TESTS
- UNIT_TESTS_PERSIST_WORKSPACE
# Update NPM
- NPM_PUBLISH:
requires:
@@ -338,6 +455,6 @@ workflows:
requires:
- VIEWER_DEMO_BUILD
# Update hub.docker.org
- DOCKER_PUBLISH:
- DOCKER_MASTER_PUBLISH:
requires:
- NPM_PUBLISH
+1
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@@ -0,0 +1 @@
PERCY_TOKEN=<your token here>
@@ -0,0 +1,29 @@
### Request Checklist
- [] Brief description of changes
- [] Links to any relevant issues
- [] Required status checks are passing
- [] `@mention` a maintainer to request a review
#### Special
> If this PR is not on a branch for this repo, it is "untrusted" and does not
> have access to env vars. Reviewers can kick off a trusted docker deploy by:
>
> 1. Verifying there are no malicious changes to CI build
> 2. Using the [git-push-fork-to-upstream-branch][script] script
> 3. Executing the manual approval step in the CI workflow
- [] Request docker publish of PR
_Want to improve this process? Consider PR'ing the ability for reviewers to add
a label to trigger this process._
<!--
Links
-->
<!-- prettier-ignore-start -->
[blog]: https://circleci.com/blog/triggering-trusted-ci-jobs-on-untrusted-forks/
[script]: https://github.com/jklukas/git-push-fork-to-upstream-branch
<!-- prettier-ignore-end -->
+1
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@@ -21,6 +21,7 @@ npm-debug.log
package-lock.json
yarn-error.log
.DS_Store
.env
# Common Example Data Directories
sampledata/
+12 -7
View File
@@ -1,10 +1,11 @@
{
"editor.rulers": [80, 120],
"editor.rulers": [
80,
120
],
// ===
// Spacing
// ===
"editor.insertSpaces": true,
"editor.tabSize": 2,
"editor.trimAutoWhitespace": true,
@@ -12,17 +13,21 @@
"files.eol": "\n",
"files.insertFinalNewline": true,
"files.trimFinalNewlines": true,
// ===
// Event Triggers
// ===
"editor.formatOnSave": true,
"eslint.autoFixOnSave": true,
"eslint.run": "onSave",
"eslint.validate": [
{ "language": "javascript", "autoFix": true },
{ "language": "javascriptreact", "autoFix": true }
{
"language": "javascript",
"autoFix": true
},
{
"language": "javascriptreact",
"autoFix": true
}
],
"prettier.disableLanguages": [],
"prettier.endOfLine": "lf",
+56 -4
View File
@@ -1,23 +1,54 @@
// ~~ ENV
const dotenv = require('dotenv');
//
const path = require('path');
const webpack = require('webpack');
const PACKAGE = require('../platform/viewer/package.json');
// ~~ RULES
const loadShadersRule = require('./rules/loadShaders.js');
const loadWebWorkersRule = require('./rules/loadWebWorkers.js');
const transpileJavaScriptRule = require('./rules/transpileJavaScript.js');
// ~~ PLUGINS
const TerserJSPlugin = require('terser-webpack-plugin');
// ~~ ENV VARS
const NODE_ENV = process.env.NODE_ENV;
const QUICK_BUILD = process.env.QUICK_BUILD;
const BUILD_NUM = process.env.CIRCLE_BUILD_NUM || '0';
//
dotenv.config();
module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
if (!process.env.NODE_ENV) {
throw new Error('process.env.NODE_ENV not set');
}
const mode =
process.env.NODE_ENV === 'production' ? 'production' : 'development';
const mode = NODE_ENV === 'production' ? 'production' : 'development';
const isProdBuild = NODE_ENV === 'production';
const isQuickBuild = QUICK_BUILD === 'true';
return {
mode,
const config = {
mode: isProdBuild ? 'production' : 'development',
devtool: isProdBuild ? 'source-map' : 'cheap-module-eval-source-map',
entry: {
app: `${SRC_DIR}/index.js`,
},
optimization: {
minimize: isProdBuild,
sideEffects: true,
},
context: SRC_DIR,
stats: {
colors: true,
hash: true,
timings: true,
assets: true,
chunks: false,
chunkModules: false,
modules: false,
children: false,
warnings: true,
},
module: {
rules: [
transpileJavaScriptRule(mode),
@@ -45,6 +76,8 @@ module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
'process.env.DEBUG': JSON.stringify(process.env.DEBUG),
'process.env.APP_CONFIG': JSON.stringify(process.env.APP_CONFIG || ''),
'process.env.PUBLIC_URL': JSON.stringify(process.env.PUBLIC_URL || '/'),
'process.env.VERSION_NUMBER': JSON.stringify(PACKAGE.version || ''),
'process.env.BUILD_NUM': JSON.stringify(BUILD_NUM),
}),
],
// Fix: https://github.com/webpack-contrib/css-loader/issues/447#issuecomment-285598881
@@ -53,4 +86,23 @@ module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
fs: 'empty',
},
};
if (isProdBuild) {
config.optimization.minimizer = [
new TerserJSPlugin({
// Supports:
// source-map and inline-source-map
sourceMap: isProdBuild && !isQuickBuild,
parallel: true,
terserOptions: {},
}),
];
}
if (isQuickBuild) {
config.optimization.minimize = false;
config.devtool = false;
}
return config;
};
+1
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@@ -44,6 +44,7 @@ RUN yarn config set workspaces-experimental true
RUN yarn install
ENV PATH /usr/src/app/node_modules/.bin:$PATH
ENV QUICK_BUILD true
# ENV GENERATE_SOURCEMAP=false
# ENV REACT_APP_CONFIG=config/default.js
+3
View File
@@ -26,6 +26,7 @@
[![Netlify Status][netlify-image]][netlify-url]
[![CircleCI][circleci-image]][circleci-url]
[![codecov][codecov-image]][codecov-url]
[![This project is using Percy.io for visual regression testing.][percy-image]](percy-url)
[![All Contributors](https://img.shields.io/badge/all_contributors-10-orange.svg?style=flat-square)](#contributors)
<!-- prettier-ignore-end -->
@@ -288,6 +289,8 @@ MIT © [OHIF](https://github.com/OHIF)
[docker-image-url]: https://hub.docker.com/r/ohif/viewer
[license-image]: https://img.shields.io/badge/license-MIT-blue.svg?style=flat-square
[license-url]: LICENSE
[percy-image]: https://percy.io/static/images/percy-badge.svg
[percy-url]: https://percy.io/Open-Health-Imaging-Foundation/OHIF-Viewer
<!-- Links -->
[monorepo]: https://en.wikipedia.org/wiki/Monorepo
[how-to-fork]: https://help.github.com/en/articles/fork-a-repo
+13 -6
View File
@@ -140,8 +140,8 @@ children: PropTypes.node,
customProps: PropTypes.object
```
Viewport components are managed by the `LayoutManager`. Which Viewport component
is used depends on:
Viewport components are managed by the `ViewportGrid` Component. Which Viewport
component is used depends on:
- The Layout Configuration
- Registered SopClassHandlers
@@ -159,8 +159,8 @@ For a complete example implementation,
An extension can register a Toolbar Module by providing a `getToolbarModule()`
method that returns a React Component. The component does not receive any props.
If you want to modify or react to state, you will need to connect to the redux
store.
The given toolbar must determine its set of elements and the context of them. The set of elements will be listed on toolbar `definitions`.
store. The given toolbar must determine its set of elements and the context of
them. The set of elements will be listed on toolbar `definitions`.
![Toolbar Extension](../assets/img/extensions-toolbar.gif)
@@ -173,7 +173,11 @@ For a complete example implementation,
##### Toolbar Custom Component
Toolbar elements can define its own custom react component to be consumed when rendering it. So far, it accepts `Functional` and `Class` Components. For that, you just need to expose your `CustomToolbarComponent` as the value of key `CustomComponent`. In case the property `CustomComponent` is not present, a default toolbar component will be used to render it. See bellow
Toolbar elements can define its own custom react component to be consumed when
rendering it. So far, it accepts `Functional` and `Class` Components. For that,
you just need to expose your `CustomToolbarComponent` as the value of key
`CustomComponent`. In case the property `CustomComponent` is not present, a
default toolbar component will be used to render it. See bellow
```js
definitions: [
@@ -188,8 +192,11 @@ definitions: [
]
```
`CustomComponent` components will receive the following props:
- parentContext: parent context. (In most of the cases it will be a ToolbarRow instance)
- parentContext: parent context. (In most of the cases it will be a ToolbarRow
instance)
- toolbarClickCallback: callback method when clicking on toolbar
- button: its own definition object
- key: react key prop
@@ -48,7 +48,7 @@ If everything worked as expected, you should have a new `dist/` directory in the
project's folder. It should roughly resemble the following:
```bash
dist/
<root>platform/viewer/dist/
├── app-config.js
├── app.bundle.js
├── app.css
+33
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@@ -3,6 +3,39 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [1.4.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.3.1...@ohif/extension-cornerstone@1.4.0) (2019-10-26)
### Features
* Snapshot Download Tool ([#840](https://github.com/OHIF/Viewers/issues/840)) ([450e098](https://github.com/OHIF/Viewers/commit/450e0981a5ba054fcfcb85eeaeb18371af9088f8))
## [1.3.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.3.0...@ohif/extension-cornerstone@1.3.1) (2019-10-09)
### Bug Fixes
* 🐛 set tools bidirectional, eraser and annotate command ([#1020](https://github.com/OHIF/Viewers/issues/1020)) ([a28984e](https://github.com/OHIF/Viewers/commit/a28984e))
# [1.3.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.2.5...@ohif/extension-cornerstone@1.3.0) (2019-10-09)
### Features
* Multiple fixes and implementation changes to react-cornerstone-viewport ([1cc94f3](https://github.com/OHIF/Viewers/commit/1cc94f3))
## [1.2.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.2.4...@ohif/extension-cornerstone@1.2.5) (2019-09-27)
+2 -2
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-cornerstone",
"version": "1.2.5",
"version": "1.4.0",
"description": "OHIF extension for Cornerstone",
"author": "OHIF",
"license": "MIT",
@@ -48,6 +48,6 @@
"@babel/runtime": "^7.5.5",
"classnames": "^2.2.6",
"lodash.throttle": "^4.1.1",
"react-cornerstone-viewport": "0.1.30"
"react-cornerstone-viewport": "2.x.x"
}
}
@@ -23,36 +23,40 @@ const MEASUREMENT_ACTION_MAP = {
const mapStateToProps = (state, ownProps) => {
let dataFromStore;
// TODO: This may not be updated anymore :thinking:
if (state.extensions && state.extensions.cornerstone) {
dataFromStore = state.extensions.cornerstone;
}
// TODO: This should be extension configuration
// ...dataFromStore -->
// availableTools,
// onNewImage,
// onRightClick,
// onTouchPress,
// onTouchStart,
// onMouseClick,
// If this is the active viewport, enable prefetching.
const { viewportIndex } = ownProps; //.viewportData;
const isActive = viewportIndex === state.viewports.activeViewportIndex;
const viewportSpecificData =
state.viewports.viewportSpecificData[viewportIndex] || {};
// CINE
let isPlaying = false;
let frameRate = 24;
if (viewportSpecificData && viewportSpecificData.cine) {
const cine = viewportSpecificData.cine;
isPlaying = cine.isPlaying === true;
frameRate = cine.cineFrameRate || frameRate;
}
return {
layout: state.viewports.layout,
// layout: state.viewports.layout,
isActive,
// TODO: Need a cleaner and more versatile way.
// Currently justing using escape hatch + commands
// activeTool: activeButton && activeButton.command,
...dataFromStore,
enableStackPrefetch: isActive,
isStackPrefetchEnabled: isActive,
isPlaying,
frameRate,
//stack: viewportSpecificData.stack,
cineToolData: viewportSpecificData.cine,
viewport: viewportSpecificData.viewport,
// viewport: viewportSpecificData.viewport,
};
};
@@ -1,10 +1,10 @@
import React, { Component } from "react";
import React, { Component } from 'react';
import ConnectedCornerstoneViewport from "./ConnectedCornerstoneViewport";
import OHIF from "@ohif/core";
import PropTypes from "prop-types";
import cornerstone from "cornerstone-core";
import handleSegmentationStorage from "./handleSegmentationStorage.js";
import ConnectedCornerstoneViewport from './ConnectedCornerstoneViewport';
import OHIF from '@ohif/core';
import PropTypes from 'prop-types';
import cornerstone from 'cornerstone-core';
import handleSegmentationStorage from './handleSegmentationStorage.js';
const { StackManager } = OHIF.utils;
@@ -18,7 +18,7 @@ cornerstone.metaData.addProvider(
StackManager.setMetadataProvider(metadataProvider);
const SOP_CLASSES = {
SEGMENTATION_STORAGE: "1.2.840.10008.5.1.4.1.1.66.4"
SEGMENTATION_STORAGE: '1.2.840.10008.5.1.4.1.1.66.4',
};
const specialCaseHandlers = {};
@@ -28,11 +28,11 @@ specialCaseHandlers[
class OHIFCornerstoneViewport extends Component {
state = {
viewportData: null
viewportData: null,
};
static defaultProps = {
customProps: {}
customProps: {},
};
static propTypes = {
@@ -40,17 +40,17 @@ class OHIFCornerstoneViewport extends Component {
displaySet: PropTypes.object,
viewportIndex: PropTypes.number,
children: PropTypes.node,
customProps: PropTypes.object
customProps: PropTypes.object,
};
static id = "OHIFCornerstoneViewport";
static id = 'OHIFCornerstoneViewport';
static init() {
console.log("OHIFCornerstoneViewport init()");
console.log('OHIFCornerstoneViewport init()');
}
static destroy() {
console.log("OHIFCornerstoneViewport destroy()");
console.log('OHIFCornerstoneViewport destroy()');
StackManager.clearStacks();
}
@@ -72,15 +72,15 @@ class OHIFCornerstoneViewport extends Component {
frameIndex = 0
) {
if (!studies || !studies.length) {
throw new Error("Studies not provided.");
throw new Error('Studies not provided.');
}
if (!studyInstanceUid) {
throw new Error("StudyInstanceUID not provided.");
throw new Error('StudyInstanceUID not provided.');
}
if (!displaySetInstanceUid) {
throw new Error("StudyInstanceUID not provided.");
throw new Error('StudyInstanceUID not provided.');
}
// Create shortcut to displaySet
@@ -89,7 +89,7 @@ class OHIFCornerstoneViewport extends Component {
);
if (!study) {
throw new Error("Study not found.");
throw new Error('Study not found.');
}
const displaySet = study.displaySets.find(set => {
@@ -97,7 +97,7 @@ class OHIFCornerstoneViewport extends Component {
});
if (!displaySet) {
throw new Error("Display Set not found.");
throw new Error('Display Set not found.');
}
// Get stack from Stack Manager
@@ -110,7 +110,7 @@ class OHIFCornerstoneViewport extends Component {
if (sopInstanceUid) {
const index = stack.imageIds.findIndex(imageId => {
const sopCommonModule = cornerstone.metaData.get(
"sopCommonModule",
'sopCommonModule',
imageId
);
if (!sopCommonModule) {
@@ -124,7 +124,7 @@ class OHIFCornerstoneViewport extends Component {
stack.currentImageIdIndex = index;
} else {
console.warn(
"SOPInstanceUID provided was not found in specified DisplaySet"
'SOPInstanceUID provided was not found in specified DisplaySet'
);
}
}
@@ -132,22 +132,6 @@ class OHIFCornerstoneViewport extends Component {
return stack;
}
static getViewportData = (
studies,
studyInstanceUid,
displaySetInstanceUid,
sopInstanceUid,
frameIndex
) => {
return OHIFCornerstoneViewport.getCornerstoneStack(
studies,
studyInstanceUid,
displaySetInstanceUid,
sopInstanceUid,
frameIndex
);
};
getViewportData = async (
studies,
studyInstanceUid,
@@ -172,7 +156,7 @@ class OHIFCornerstoneViewport extends Component {
);
break;
default:
const stack = OHIFCornerstoneViewport.getViewportData(
const stack = OHIFCornerstoneViewport.getCornerstoneStack(
studies,
studyInstanceUid,
displaySetInstanceUid,
@@ -183,7 +167,7 @@ class OHIFCornerstoneViewport extends Component {
viewportData = {
studyInstanceUid,
displaySetInstanceUid,
stack
stack,
};
break;
@@ -199,7 +183,7 @@ class OHIFCornerstoneViewport extends Component {
displaySetInstanceUid,
sopClassUids,
sopInstanceUid,
frameIndex
frameIndex,
} = displaySet;
if (!studyInstanceUid || !displaySetInstanceUid) {
@@ -208,7 +192,7 @@ class OHIFCornerstoneViewport extends Component {
if (sopClassUids && sopClassUids.length > 1) {
console.warn(
"More than one SOPClassUid in the same series is not yet supported."
'More than one SOPClassUid in the same series is not yet supported.'
);
}
@@ -223,7 +207,7 @@ class OHIFCornerstoneViewport extends Component {
frameIndex
).then(viewportData => {
this.setState({
viewportData
viewportData,
});
});
}
@@ -249,25 +233,42 @@ class OHIFCornerstoneViewport extends Component {
render() {
let childrenWithProps = null;
if (!this.state.viewportData) {
return null;
}
const { viewportIndex } = this.props;
const {
imageIds,
currentImageIdIndex,
// If this comes from the instance, would be a better default
// `FrameTime` in the instance
// frameRate = 0,
} = this.state.viewportData.stack;
// TODO: Does it make more sense to use Context?
if (this.props.children && this.props.children.length) {
childrenWithProps = this.props.children.map((child, index) => {
return React.cloneElement(child, {
viewportIndex: this.props.viewportIndex,
key: index
key: index,
});
});
}
return (
<>
{this.state.viewportData && (
<ConnectedCornerstoneViewport
viewportData={this.state.viewportData}
viewportIndex={this.props.viewportIndex}
{...this.props.customProps}
/>
)}
<ConnectedCornerstoneViewport
viewportIndex={viewportIndex}
imageIds={imageIds}
imageIdIndex={currentImageIdIndex}
// ~~ Connected (From REDUX)
// frameRate={frameRate}
// isPlaying={false}
// isStackPrefetchEnabled={true}
// onElementEnabled={() => {}}
// setViewportActive{() => {}}
{...this.props.customProps}
/>
{childrenWithProps}
</>
);
+15 -1
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@@ -1,8 +1,13 @@
import init from './init.js';
import asyncComponent from './asyncComponent.js';
import commandsModule from './commandsModule.js';
import toolbarModule from './toolbarModule.js';
const OHIFCornerstoneViewport = asyncComponent(() => import( /* webpackChunkName: "OHIFCornerstoneViewport" */ './OHIFCornerstoneViewport.js'));
const OHIFCornerstoneViewport = asyncComponent(() =>
import(
/* webpackChunkName: "OHIFCornerstoneViewport" */ './OHIFCornerstoneViewport.js'
)
);
/**
*
@@ -13,6 +18,15 @@ export default {
*/
id: 'cornerstone',
/**
*
*
* @param {object} [configuration={}]
* @param {object|array} [configuration.csToolsConfig] - Passed directly to `initCornerstoneTools`
*/
preRegistration(configuration = {}) {
init(configuration);
},
getViewportModule() {
return OHIFCornerstoneViewport;
},
+87
View File
@@ -0,0 +1,87 @@
import OHIF from '@ohif/core';
import cornerstone from 'cornerstone-core';
import csTools from 'cornerstone-tools';
import initCornerstoneTools from './initCornerstoneTools.js';
/**
*
* @param {object} configuration
* @param {Object|Array} configuration.csToolsConfig
*/
export default function init(configuration = {}) {
const { csToolsConfig } = configuration;
const { StackManager } = OHIF.utils;
const metadataProvider = new OHIF.cornerstone.MetadataProvider();
// ~~ Set our MetadataProvider
cornerstone.metaData.addProvider(
metadataProvider.provider.bind(metadataProvider)
);
StackManager.setMetadataProvider(metadataProvider);
// ~~
const defaultCsToolsConfig = csToolsConfig || {
globalToolSyncEnabled: true,
showSVGCursors: true,
autoResizeViewports: false,
};
initCornerstoneTools(defaultCsToolsConfig);
// ~~ Toooools 🙌
const {
PanTool,
ZoomTool,
WwwcTool,
MagnifyTool,
StackScrollTool,
StackScrollMouseWheelTool,
// Touch
PanMultiTouchTool,
ZoomTouchPinchTool,
// Annotations
EraserTool,
ArrowAnnotateTool,
BidirectionalTool,
LengthTool,
AngleTool,
FreehandRoiTool,
EllipticalRoiTool,
DragProbeTool,
RectangleRoiTool,
// Segmentation
BrushTool,
} = csTools;
const tools = [
PanTool,
ZoomTool,
WwwcTool,
MagnifyTool,
StackScrollTool,
StackScrollMouseWheelTool,
// Touch
PanMultiTouchTool,
ZoomTouchPinchTool,
// Annotations
EraserTool,
ArrowAnnotateTool,
BidirectionalTool,
LengthTool,
AngleTool,
FreehandRoiTool,
EllipticalRoiTool,
DragProbeTool,
RectangleRoiTool,
// Segmentation
BrushTool,
];
tools.forEach(tool => csTools.addTool(tool));
csTools.setToolActive('Pan', { mouseButtonMask: 4 });
csTools.setToolActive('Zoom', { mouseButtonMask: 2 });
csTools.setToolActive('Wwwc', { mouseButtonMask: 1 });
csTools.setToolActive('StackScrollMouseWheel', {}); // TODO: Empty options should not be required
csTools.setToolActive('PanMultiTouch', { pointers: 2 }); // TODO: Better error if no options
csTools.setToolActive('ZoomTouchPinch', {});
}
+13 -3
View File
@@ -74,7 +74,7 @@ const definitions = [
label: 'Annotate',
icon: 'measure-non-target',
//
type: TOOLBAR_BUTTON_TYPES.COMMAND,
type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
commandName: 'setToolActive',
commandOptions: { toolName: 'ArrowAnnotate' },
},
@@ -200,7 +200,7 @@ const definitions = [
label: 'Bidirectional',
icon: 'measure-target',
//
type: TOOLBAR_BUTTON_TYPES.COMMAND,
type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
commandName: 'setToolActive',
commandOptions: { toolName: 'Bidirectional' },
},
@@ -209,10 +209,20 @@ const definitions = [
label: 'Eraser',
icon: 'eraser',
//
type: TOOLBAR_BUTTON_TYPES.COMMAND,
type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
commandName: 'setToolActive',
commandOptions: { toolName: 'Eraser' },
},
{
id: 'Download',
label: 'Download',
icon: 'create-screen-capture',
//
type: TOOLBAR_BUTTON_TYPES.BUILT_IN,
options: {
behavior: 'DOWNLOAD_SCREEN_SHOT',
},
},
],
},
];
+224
View File
@@ -3,6 +3,230 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
## [0.52.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.20...@ohif/extension-vtk@0.52.21) (2019-10-26)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.19...@ohif/extension-vtk@0.52.20) (2019-10-26)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.19](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.18...@ohif/extension-vtk@0.52.19) (2019-10-25)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.18](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.17...@ohif/extension-vtk@0.52.18) (2019-10-25)
### Bug Fixes
* 🐛 Orthographic MPR fix ([#1092](https://github.com/OHIF/Viewers/issues/1092)) ([460e375](https://github.com/OHIF/Viewers/commit/460e375f0aa75d35f7a46b4d48e6cc706019956d))
## [0.52.17](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.16...@ohif/extension-vtk@0.52.17) (2019-10-25)
### Bug Fixes
* 🐛 Fix crosshairs location when using MIP ([#1080](https://github.com/OHIF/Viewers/issues/1080)) ([b451ce4](https://github.com/OHIF/Viewers/commit/b451ce440796f13b0891739d2130e8ee71993d3d))
## [0.52.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.15...@ohif/extension-vtk@0.52.16) (2019-10-23)
### Bug Fixes
* 🐛 Switch to orhtographic view for 2D MPR ([#1074](https://github.com/OHIF/Viewers/issues/1074)) ([13d337a](https://github.com/OHIF/Viewers/commit/13d337aaabb8dadf6366c6262c5e47e7781edd08))
## [0.52.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.14...@ohif/extension-vtk@0.52.15) (2019-10-23)
### Performance Improvements
* ⚡️ Throttle UI refresh of synced WL value in vtk port ([#1070](https://github.com/OHIF/Viewers/issues/1070)) ([9d08e81](https://github.com/OHIF/Viewers/commit/9d08e81aa5def63a5e34f464aae099f7c29f0ac5))
## [0.52.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.13...@ohif/extension-vtk@0.52.14) (2019-10-22)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.12...@ohif/extension-vtk@0.52.13) (2019-10-18)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.11...@ohif/extension-vtk@0.52.12) (2019-10-18)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.10...@ohif/extension-vtk@0.52.11) (2019-10-15)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.9...@ohif/extension-vtk@0.52.10) (2019-10-15)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.8...@ohif/extension-vtk@0.52.9) (2019-10-14)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.7...@ohif/extension-vtk@0.52.8) (2019-10-14)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.6...@ohif/extension-vtk@0.52.7) (2019-10-11)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.5...@ohif/extension-vtk@0.52.6) (2019-10-11)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.4...@ohif/extension-vtk@0.52.5) (2019-10-10)
### Performance Improvements
* ⚡️ Update react-vtkjs-viewport for performance improvement ([6ee5094](https://github.com/OHIF/Viewers/commit/6ee5094))
## [0.52.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.3...@ohif/extension-vtk@0.52.4) (2019-10-10)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.2...@ohif/extension-vtk@0.52.3) (2019-10-09)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.52.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.1...@ohif/extension-vtk@0.52.2) (2019-10-09)
### Performance Improvements
* 🎸 Update vtk viewport for faster image reconstruction ([#1016](https://github.com/OHIF/Viewers/issues/1016)) ([8513ad9](https://github.com/OHIF/Viewers/commit/8513ad9))
## [0.52.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.0...@ohif/extension-vtk@0.52.1) (2019-10-04)
**Note:** Version bump only for package @ohif/extension-vtk
# [0.52.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.3...@ohif/extension-vtk@0.52.0) (2019-10-03)
### Features
* 🎸 Synced Window Leveling ([559b637](https://github.com/OHIF/Viewers/commit/559b637)), closes [#558](https://github.com/OHIF/Viewers/issues/558)
## [0.51.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.2...@ohif/extension-vtk@0.51.3) (2019-10-03)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.51.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.1...@ohif/extension-vtk@0.51.2) (2019-10-02)
**Note:** Version bump only for package @ohif/extension-vtk
## [0.51.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.0...@ohif/extension-vtk@0.51.1) (2019-10-01)
### Bug Fixes
* **rotate:** Use new MPR rotate in react-vtkjs-viewport 0.1.2 ([#964](https://github.com/OHIF/Viewers/issues/964)) ([8503cbc](https://github.com/OHIF/Viewers/commit/8503cbc))
# [0.51.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.23...@ohif/extension-vtk@0.51.0) (2019-10-01)
+5 -4
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/extension-vtk",
"version": "0.51.0",
"version": "0.52.21",
"description": "OHIF extension for VTK.js",
"author": "OHIF",
"license": "MIT",
@@ -48,11 +48,12 @@
},
"dependencies": {
"@babel/runtime": "^7.5.5",
"react-vtkjs-viewport": "0.1.0"
"lodash.throttle": "^4.1.1",
"react-vtkjs-viewport": "^0.3.7"
},
"devDependencies": {
"@ohif/core": "^1.0.1",
"@ohif/ui": "^0.52.0",
"@ohif/core": "^1.6.0",
"@ohif/ui": "^0.57.0",
"cornerstone-tools": "^4.0.9",
"cornerstone-wado-image-loader": "^3.0.0",
"dcmjs": "^0.6.1",
+7 -7
View File
@@ -1,6 +1,6 @@
import OHIF from "@ohif/core";
import { View2D } from "react-vtkjs-viewport";
import { connect } from "react-redux";
import OHIF from '@ohif/core';
import { View2D } from 'react-vtkjs-viewport';
import { connect } from 'react-redux';
const { setViewportActive, setViewportSpecificData } = OHIF.redux.actions;
@@ -24,7 +24,7 @@ const mapStateToProps = (state, ownProps) => {
// Hopefully this doesn't break anything under the hood for this one
// activeTool: activeButton && activeButton.command,
...dataFromStore,
enableStackPrefetch: isActive
enableStackPrefetch: isActive,
};
};
@@ -38,7 +38,7 @@ const mapDispatchToProps = (dispatch, ownProps) => {
setViewportSpecificData: data => {
dispatch(setViewportSpecificData(viewportIndex, data));
}
},
};
};
@@ -63,10 +63,10 @@ const mergeProps = (propsFromState, propsFromDispatch, ownProps) => {
// Store the API details for later
//setViewportSpecificData({ vtkApi: api });
if (afterCreation && typeof afterCreation === "function") {
if (afterCreation && typeof afterCreation === 'function') {
afterCreation(api);
}
}
},
};
return props;
};
+4 -4
View File
@@ -3,15 +3,15 @@
}
.loadingIndicator {
background-color: rgba(0, 0, 0, 0.75);
font-size: 18px;
height: 100%;
background-color: rgba(0, 0, 0, 0);
font-size: 8px;
height: 20%;
overflow: hidden;
position: absolute;
top: 0;
width: 100%;
z-index: 1;
/* Necessary for click-through to cornerstone element below */
/* Necessary for click-through to vtkjs element below */
pointer-events: none;
}
+4 -3
View File
@@ -1,7 +1,7 @@
import './LoadingIndicator.css';
import React, { PureComponent } from 'react';
import { withTranslation } from 'react-i18next';
import PropTypes from 'prop-types';
class LoadingIndicator extends PureComponent {
@@ -35,7 +35,8 @@ class LoadingIndicator extends PureComponent {
<div className="imageViewerLoadingIndicator loadingIndicator">
<div className="indicatorContents">
<p>
Loading... <i className="fa fa-spin fa-circle-o-notch fa-fw" />{' '}
{this.props.t('Reformatting')}...
<i className="fa fa-spin fa-circle-o-notch fa-fw" />
{percComplete}
</p>
</div>
@@ -46,4 +47,4 @@ class LoadingIndicator extends PureComponent {
}
}
export default LoadingIndicator;
export default withTranslation('Common')(LoadingIndicator);
+139 -70
View File
@@ -1,16 +1,16 @@
import React, { Component } from "react";
import { getImageData, loadImageData } from "react-vtkjs-viewport";
import React, { Component } from 'react';
import { getImageData, loadImageData } from 'react-vtkjs-viewport';
import ConnectedVTKViewport from "./ConnectedVTKViewport";
import LoadingIndicator from "./LoadingIndicator.js";
import OHIF from "@ohif/core";
import PropTypes from "prop-types";
import cornerstone from "cornerstone-core";
import handleSegmentationStorage from "./handleSegmentationStorage.js";
import vtkDataArray from "vtk.js/Sources/Common/Core/DataArray";
import vtkImageData from "vtk.js/Sources/Common/DataModel/ImageData";
import vtkVolume from "vtk.js/Sources/Rendering/Core/Volume";
import vtkVolumeMapper from "vtk.js/Sources/Rendering/Core/VolumeMapper";
import ConnectedVTKViewport from './ConnectedVTKViewport';
import LoadingIndicator from './LoadingIndicator.js';
import OHIF from '@ohif/core';
import PropTypes from 'prop-types';
import cornerstone from 'cornerstone-core';
import handleSegmentationStorage from './handleSegmentationStorage.js';
import vtkDataArray from 'vtk.js/Sources/Common/Core/DataArray';
import vtkImageData from 'vtk.js/Sources/Common/DataModel/ImageData';
import vtkVolume from 'vtk.js/Sources/Rendering/Core/Volume';
import vtkVolumeMapper from 'vtk.js/Sources/Rendering/Core/VolumeMapper';
const { StackManager } = OHIF.utils;
@@ -24,7 +24,7 @@ cornerstone.metaData.addProvider(
StackManager.setMetadataProvider(metadataProvider);
const SOP_CLASSES = {
SEGMENTATION_STORAGE: "1.2.840.10008.5.1.4.1.1.66.4"
SEGMENTATION_STORAGE: '1.2.840.10008.5.1.4.1.1.66.4',
};
const specialCaseHandlers = {};
@@ -42,7 +42,7 @@ const volumeCache = {};
*/
function createLabelMapImageData(backgroundImageData) {
const labelMapData = vtkImageData.newInstance(
backgroundImageData.get("spacing", "origin", "direction")
backgroundImageData.get('spacing', 'origin', 'direction')
);
labelMapData.setDimensions(backgroundImageData.getDimensions());
labelMapData.computeTransforms();
@@ -50,7 +50,7 @@ function createLabelMapImageData(backgroundImageData) {
const values = new Uint8Array(backgroundImageData.getNumberOfPoints());
const dataArray = vtkDataArray.newInstance({
numberOfComponents: 1, // labelmap with single component
values
values,
});
labelMapData.getPointData().setScalars(dataArray);
@@ -61,24 +61,24 @@ class OHIFVTKViewport extends Component {
state = {
volumes: null,
paintFilterLabelMapImageData: null,
paintFilterBackgroundImageData: null
paintFilterBackgroundImageData: null,
};
static propTypes = {
studies: PropTypes.object,
displaySet: PropTypes.object,
viewportIndex: PropTypes.number,
children: PropTypes.node
children: PropTypes.node,
};
static id = "OHIFVTKViewport";
static id = 'OHIFVTKViewport';
static init() {
console.log("OHIFVTKViewport init()");
console.log('OHIFVTKViewport init()');
}
static destroy() {
console.log("OHIFVTKViewport destroy()");
console.log('OHIFVTKViewport destroy()');
StackManager.clearStacks();
}
@@ -109,7 +109,7 @@ class OHIFVTKViewport extends Component {
} else if (sopInstanceUid) {
const index = stack.imageIds.findIndex(imageId => {
const sopCommonModule = cornerstone.metaData.get(
"sopCommonModule",
'sopCommonModule',
imageId
);
if (!sopCommonModule) {
@@ -151,8 +151,8 @@ class OHIFVTKViewport extends Component {
switch (sopClassUid) {
case SOP_CLASSES.SEGMENTATION_STORAGE:
throw new Error("Not yet implemented");
throw new Error('Not yet implemented');
/*
const data = handleSegmentationStorage(
stack.imageIds,
displaySetInstanceUid
@@ -164,72 +164,82 @@ class OHIFVTKViewport extends Component {
return loadImageData(imageDataObject).then(() => {
return {
data: imageDataObject.vtkImageData,
labelmap: labelmapDataObject
labelmap: labelmapDataObject,
};
});
*/
default:
imageDataObject = getImageData(stack.imageIds, displaySetInstanceUid);
return loadImageData(imageDataObject).then(() => {
return {
data: imageDataObject.vtkImageData
};
});
return imageDataObject;
}
};
getOrCreateVolume(data, displaySetInstanceUid) {
getOrCreateVolume(imageDataObject, displaySetInstanceUid) {
if (volumeCache[displaySetInstanceUid]) {
return volumeCache[displaySetInstanceUid];
}
const { vtkImageData, imageMetaData0 } = imageDataObject;
const { windowWidth, windowCenter, modality } = imageMetaData0;
let lower;
let upper;
if (modality === 'PT') {
// For PET just set the range to 0-5 SUV
lower = 0;
upper = 5;
} else {
lower = windowCenter - windowWidth / 2.0;
upper = windowCenter + windowWidth / 2.0;
}
const volumeActor = vtkVolume.newInstance();
const volumeMapper = vtkVolumeMapper.newInstance();
volumeActor.setMapper(volumeMapper);
volumeMapper.setInputData(data);
volumeMapper.setInputData(vtkImageData);
const range = data.getPointData().getScalars().getRange();
volumeActor
.getProperty()
.getRGBTransferFunction(0)
.setRange(lower, upper);
// TODO: For PET we might want to just set this to 0-5 SUV
volumeActor.getProperty().getRGBTransferFunction(0).setRange(range[0], range[1]);
// TODO: Should look into implementing autoAdjustSampleDistance in vtk
const sampleDistance =
1.2 *
Math.sqrt(
data
.getSpacing()
.map((v) => v * v)
.reduce((a, b) => a + b, 0)
);
const spacing = vtkImageData.getSpacing();
// Set the sample distance to half the mean length of one side. This is where the divide by 6 comes from.
// https://github.com/Kitware/VTK/blob/6b559c65bb90614fb02eb6d1b9e3f0fca3fe4b0b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.cxx#L344
const sampleDistance = (spacing[0] + spacing[1] + spacing[2]) / 6;
volumeMapper.setSampleDistance(sampleDistance);
// Be generous to surpress warnings, as the logging really hurts performance.
// TODO: maybe we should auto adjust samples to 1000.
volumeMapper.setMaximumSamplesPerRay(4000);
volumeCache[displaySetInstanceUid] = volumeActor;
return volumeActor;
}
async setStateFromProps() {
setStateFromProps() {
const { studies, displaySet } = this.props.viewportData;
const {
studyInstanceUid,
displaySetInstanceUid,
sopClassUids,
sopInstanceUid,
frameIndex
frameIndex,
} = displaySet;
if (sopClassUids.length > 1) {
console.warn(
"More than one SOPClassUid in the same series is not yet supported."
'More than one SOPClassUid in the same series is not yet supported.'
);
}
const sopClassUid = sopClassUids[0];
let { data, labelmap } = await this.getViewportData(
const imageDataObject = this.getViewportData(
studies,
studyInstanceUid,
displaySetInstanceUid,
@@ -238,19 +248,45 @@ class OHIFVTKViewport extends Component {
frameIndex
);
this.imageDataObject = imageDataObject;
// TODO: Temporarily disabling this since it is not yet
// being used and hurts performance significantly.
/*if (!labelmap) {
labelmap = createLabelMapImageData(data);
}*/
const volumeActor = this.getOrCreateVolume(data, displaySetInstanceUid);
const volumeActor = this.getOrCreateVolume(
imageDataObject,
displaySetInstanceUid
);
this.setState({
volumes: [volumeActor],
paintFilterBackgroundImageData: data,
paintFilterLabelMapImageData: labelmap
paintFilterBackgroundImageData: imageDataObject.vtkImageData,
paintFilterLabelMapImageData: null, // TODO
percentComplete: 0,
});
this.setState(
{
paintFilterBackgroundImageData: imageDataObject.vtkImageData,
paintFilterLabelMapImageData: null, // TODO
percentComplete: 0,
},
() => {
this.loadProgressively(imageDataObject);
// TODO: There must be a better way to do this.
// We do this so that if all the data is available the react-vtkjs-viewport
// Will render _something_ before the volumes are set and the volume
// Construction that happens in react-vtkjs-viewport locks up the CPU.
setTimeout(() => {
this.setState({
volumes: [volumeActor],
});
}, 200);
}
);
}
componentDidMount() {
@@ -271,6 +307,37 @@ class OHIFVTKViewport extends Component {
}
}
loadProgressively(imageDataObject) {
loadImageData(imageDataObject);
const { isLoading, insertPixelDataPromises } = imageDataObject;
const numberOfFrames = insertPixelDataPromises.length;
if (!isLoading) {
this.setState({ isLoaded: true });
return;
}
insertPixelDataPromises.forEach(promise => {
promise.then(numberProcessed => {
const percentComplete = Math.floor(
(numberProcessed * 100) / numberOfFrames
);
if (percentComplete !== this.state.percentComplete) {
this.setState({
percentComplete,
});
}
});
});
Promise.all(insertPixelDataPromises).then(() => {
this.setState({ isLoaded: true });
});
}
render() {
let childrenWithProps = null;
@@ -279,30 +346,32 @@ class OHIFVTKViewport extends Component {
childrenWithProps = this.props.children.map((child, index) => {
return React.cloneElement(child, {
viewportIndex: this.props.viewportIndex,
key: index
key: index,
});
});
}
const style = { width: "100%", height: "100%", position: "relative" };
const style = { width: '100%', height: '100%', position: 'relative' };
return (
<>
{this.state.volumes ? (
<ConnectedVTKViewport
volumes={this.state.volumes}
paintFilterLabelMapImageData={
this.state.paintFilterLabelMapImageData
}
paintFilterBackgroundImageData={
this.state.paintFilterBackgroundImageData
}
viewportIndex={this.props.viewportIndex}
/>
) : (
<div style={style}>
<LoadingIndicator />
</div>
<div style={style}>
{!this.state.isLoaded && (
<LoadingIndicator percentComplete={this.state.percentComplete} />
)}
{this.state.volumes && (
<ConnectedVTKViewport
volumes={this.state.volumes}
paintFilterLabelMapImageData={
this.state.paintFilterLabelMapImageData
}
paintFilterBackgroundImageData={
this.state.paintFilterBackgroundImageData
}
viewportIndex={this.props.viewportIndex}
/>
)}
</div>
)}
{childrenWithProps}
</>
+126 -174
View File
@@ -2,69 +2,28 @@ import {
vtkInteractorStyleMPRCrosshairs,
vtkInteractorStyleMPRWindowLevel,
vtkInteractorStyleMPRSlice,
vtkInteractorStyleMPRRotate,
vtkSVGCrosshairsWidget,
vtkSVGWidgetManager,
} from 'react-vtkjs-viewport';
import setMPRLayout from './utils/setMPRLayout.js';
import setViewportToVTK from './utils/setViewportToVTK.js';
import vtkCoordinate from 'vtk.js/Sources/Rendering/Core/Coordinate';
import vtkMath from 'vtk.js/Sources/Common/Core/Math';
import vtkMatrixBuilder from 'vtk.js/Sources/Common/Core/MatrixBuilder';
import Constants from 'vtk.js/Sources/Rendering/Core/VolumeMapper/Constants.js';
import throttle from 'lodash.throttle';
const { BlendMode } = Constants;
// TODO: Put this somewhere else
let apis = {};
let currentSlabThickness = 0.1;
let defaultSlabThickness = 0.1;
function getCrosshairCallbackForIndex(index) {
return ({ worldPos }) => {
// Set camera focal point to world coordinate for linked views
apis.forEach((api, viewportIndex) => {
if (viewportIndex !== index) {
// We are basically doing the same as getSlice but with the world coordinate
// that we want to jump to instead of the camera focal point.
// I would rather do the camera adjustment directly but I keep
// doing it wrong and so this is good enough for now.
const renderWindow = api.genericRenderWindow.getRenderWindow();
const istyle = renderWindow.getInteractor().getInteractorStyle();
const sliceNormal = istyle.getSliceNormal();
const transform = vtkMatrixBuilder
.buildFromDegree()
.identity()
.rotateFromDirections(sliceNormal, [1, 0, 0]);
const mutatedWorldPos = worldPos.slice();
transform.apply(mutatedWorldPos);
const slice = mutatedWorldPos[0];
istyle.setSlice(slice);
renderWindow.render();
}
const renderer = api.genericRenderWindow.getRenderer();
const wPos = vtkCoordinate.newInstance();
wPos.setCoordinateSystemToWorld();
wPos.setValue(worldPos);
const displayPosition = wPos.getComputedDisplayValue(renderer);
const { svgWidgetManager } = api;
api.svgWidgets.crosshairsWidget.setPoint(
displayPosition[0],
displayPosition[1]
);
svgWidgetManager.render();
});
};
}
async function _getActiveViewportVTKApi(viewports) {
const { layout, viewportSpecificData, activeViewportIndex } = viewports;
const {
numRows,
numColumns,
layout,
viewportSpecificData,
activeViewportIndex,
} = viewports;
const currentData = layout.viewports[activeViewportIndex];
if (currentData && currentData.plugin === 'vtk') {
@@ -82,6 +41,8 @@ async function _getActiveViewportVTKApi(viewports) {
api = await setViewportToVTK(
displaySet,
activeViewportIndex,
numRows,
numColumns,
layout,
viewportSpecificData
);
@@ -95,50 +56,13 @@ async function _getActiveViewportVTKApi(viewports) {
function _setView(api, sliceNormal, viewUp) {
const renderWindow = api.genericRenderWindow.getRenderWindow();
const renderer = api.genericRenderWindow.getRenderer();
const camera = renderer.getActiveCamera();
const istyle = renderWindow.getInteractor().getInteractorStyle();
istyle.setSliceNormal(...sliceNormal);
camera.setViewUp(...viewUp);
istyle.setViewUp(...viewUp);
renderWindow.render();
}
function switchMPRInteractors(api, istyle) {
const renderWindow = api.genericRenderWindow.getRenderWindow();
const renderer = api.genericRenderWindow.getRenderer();
const camera = renderer.getActiveCamera();
const currentIStyle = renderWindow.getInteractor().getInteractorStyle();
let currentNormal;
if (currentIStyle.getSliceNormal && istyle.getSliceNormal) {
currentNormal = currentIStyle.getSliceNormal();
}
let currentSlabThickness;
if (currentIStyle.getSlabThickness && istyle.getSlabThickness) {
currentSlabThickness = currentIStyle.getSlabThickness();
defaultSlabThickness = currentSlabThickness;
}
renderWindow.getInteractor().setInteractorStyle(istyle);
// TODO: Not sure why this is required the second time this function is called
istyle.setInteractor(renderWindow.getInteractor());
if (istyle.getVolumeMapper() !== api.volumes[0]) {
if (currentNormal) {
istyle.setSliceNormal(currentNormal);
}
if (currentSlabThickness) {
istyle.setSlabThickness(currentSlabThickness);
}
istyle.setVolumeMapper(api.volumes[0]);
}
}
const actions = {
axial: async ({ viewports }) => {
const api = await _getActiveViewportVTKApi(viewports);
@@ -163,54 +87,58 @@ const actions = {
},
enableRotateTool: () => {
apis.forEach(api => {
const istyle = vtkInteractorStyleMPRSlice.newInstance();
const istyle = vtkInteractorStyleMPRRotate.newInstance();
switchMPRInteractors(api, istyle);
api.setInteractorStyle({ istyle });
});
},
enableCrosshairsTool: () => {
apis.forEach((api, index) => {
apis.forEach((api, apiIndex) => {
const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
switchMPRInteractors(api, istyle);
istyle.setCallback(getCrosshairCallbackForIndex(index));
api.setInteractorStyle({
istyle,
configuration: { apis, apiIndex },
});
});
},
enableLevelTool: () => {
function updateVOI(apis, windowWidth, windowCenter) {
apis.forEach(api => {
api.updateVOI(windowWidth, windowCenter);
});
}
const throttledUpdateVOIs = throttle(updateVOI, 16, { trailing: true }); // ~ 60 fps
const callbacks = {
setOnLevelsChanged: ({ windowCenter, windowWidth }) => {
apis.forEach(api => {
const renderWindow = api.genericRenderWindow.getRenderWindow();
renderWindow.render();
});
throttledUpdateVOIs(apis, windowWidth, windowCenter);
},
};
apis.forEach(api => {
const istyle = vtkInteractorStyleMPRWindowLevel.newInstance();
switchMPRInteractors(api, istyle);
api.setInteractorStyle({ istyle, callbacks });
});
},
setSlabThickness: ({ slabThickness }) => {
currentSlabThickness = slabThickness;
apis.forEach(api => {
const renderWindow = api.genericRenderWindow.getRenderWindow();
const istyle = renderWindow.getInteractor().getInteractorStyle();
if (istyle.setSlabThickness) {
istyle.setSlabThickness(currentSlabThickness);
}
renderWindow.render();
api.setSlabThickness(slabThickness);
});
},
changeSlabThickness: ({ change }) => {
currentSlabThickness += change;
currentSlabThickness = Math.max(currentSlabThickness, 0.1);
apis.forEach(api => {
const renderWindow = api.genericRenderWindow.getRenderWindow();
const istyle = renderWindow.getInteractor().getInteractorStyle();
const slabThickness = Math.max(api.getSlabThickness() + change, 0.1);
if (istyle.setSlabThickness) {
istyle.setSlabThickness(currentSlabThickness);
}
renderWindow.render();
api.setSlabThickness(slabThickness);
});
},
setBlendModeToComposite: () => {
@@ -218,13 +146,15 @@ const actions = {
const renderWindow = api.genericRenderWindow.getRenderWindow();
const istyle = renderWindow.getInteractor().getInteractorStyle();
const slabThickness = api.getSlabThickness();
const mapper = api.volumes[0].getMapper();
if (mapper.setBlendModeToComposite) {
mapper.setBlendModeToComposite();
}
if (istyle.setSlabThickness) {
istyle.setSlabThickness(defaultSlabThickness);
istyle.setSlabThickness(slabThickness);
}
renderWindow.render();
});
@@ -242,7 +172,6 @@ const actions = {
setBlendMode: ({ blendMode }) => {
apis.forEach(api => {
const renderWindow = api.genericRenderWindow.getRenderWindow();
const istyle = renderWindow.getInteractor().getInteractorStyle();
api.volumes[0].getMapper().setBlendMode(blendMode);
@@ -250,75 +179,60 @@ const actions = {
});
},
mpr2d: async ({ viewports }) => {
// TODO push a lot of this backdoor logic lower down to the library level.
const displaySet =
viewports.viewportSpecificData[viewports.activeViewportIndex];
let apiByViewport;
// Get current VOI if cornerstone viewport.
const cornerstoneVOI = getVOIFromCornerstoneViewport(displaySet);
const viewportProps = [
{
//Axial
orientation: {
sliceNormal: [0, 0, 1],
viewUp: [0, -1, 0],
},
},
{
// Sagital
orientation: {
sliceNormal: [1, 0, 0],
viewUp: [0, 0, 1],
},
},
{
// Coronal
orientation: {
sliceNormal: [0, 1, 0],
viewUp: [0, 0, 1],
},
},
];
try {
apiByViewport = await setMPRLayout(displaySet);
apis = await setMPRLayout(displaySet, viewportProps, 1, 3);
} catch (error) {
throw new Error(error);
}
apis = apiByViewport;
if (cornerstoneVOI) {
setVOI(cornerstoneVOI);
}
/*const rgbTransferFunction = apiByViewport[0].volumes[0]
.getProperty()
.getRGBTransferFunction(0);
rgbTransferFunction.onModified(() => {
apiByViewport.forEach(a => {
const renderWindow = a.genericRenderWindow.getRenderWindow();
renderWindow.render();
});
});*/
apiByViewport.forEach((api, index) => {
const renderWindow = api.genericRenderWindow.getRenderWindow();
const renderer = api.genericRenderWindow.getRenderer();
const camera = renderer.getActiveCamera();
// Add widgets and set default interactorStyle of each viewport.
apis.forEach((api, apiIndex) => {
api.addSVGWidget(
vtkSVGCrosshairsWidget.newInstance(),
'crosshairsWidget'
);
const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
renderWindow.getInteractor().setInteractorStyle(istyle);
istyle.setVolumeMapper(api.volumes[0]);
istyle.setCallback(getCrosshairCallbackForIndex(index));
const svgWidgetManager = vtkSVGWidgetManager.newInstance();
svgWidgetManager.setRenderer(renderer);
svgWidgetManager.setScale(1);
const crosshairsWidget = vtkSVGCrosshairsWidget.newInstance();
svgWidgetManager.addWidget(crosshairsWidget);
svgWidgetManager.render();
api.svgWidgetManager = svgWidgetManager;
api.svgWidgets = {
crosshairsWidget,
};
switch (index) {
default:
case 0:
//Axial
istyle.setSliceNormal(0, 0, 1);
camera.setViewUp(0, -1, 0);
break;
case 1:
// sagittal
istyle.setSliceNormal(1, 0, 0);
camera.setViewUp(0, 0, 1);
break;
case 2:
// Coronal
istyle.setSliceNormal(0, 1, 0);
camera.setViewUp(0, 0, 1);
break;
}
renderWindow.render();
api.setInteractorStyle({
istyle,
configuration: { apis, apiIndex },
});
});
},
};
@@ -408,3 +322,41 @@ export default {
definitions,
defaultContext: 'ACTIVE_VIEWPORT::VTK',
};
function getVOIFromCornerstoneViewport(displaySet) {
const cornerstoneElement = cornerstone.getEnabledElement(displaySet.dom);
if (cornerstoneElement) {
const imageId = cornerstoneElement.image.imageId;
const { modality } = cornerstone.metaData.get(
'generalSeriesModule',
imageId
);
if (modality !== 'PT') {
const { windowWidth, windowCenter } = cornerstoneElement.viewport.voi;
return {
windowWidth,
windowCenter,
};
}
}
}
function setVOI(voi) {
const { windowWidth, windowCenter } = voi;
const lower = windowCenter - windowWidth / 2.0;
const upper = windowCenter + windowWidth / 2.0;
const rgbTransferFunction = apis[0].volumes[0]
.getProperty()
.getRGBTransferFunction(0);
rgbTransferFunction.setRange(lower, upper);
apis.forEach(api => {
api.updateVOI(windowWidth, windowCenter);
});
}
+32 -36
View File
@@ -1,60 +1,56 @@
import setLayoutAndViewportData from './setLayoutAndViewportData.js';
import setSingleLayoutData from './setSingleLayoutData.js';
export default function setMPRLayout(displaySet) {
export default function setMPRLayout(
displaySet,
viewportPropsArray,
numRows = 1,
numColumns = 1
) {
return new Promise((resolve, reject) => {
let viewports = [];
const rows = 1;
const columns = 3;
const numViewports = rows * columns;
const viewportSpecificData = {};
for (let i = 0; i < numViewports; i++) {
viewports.push({
height: `${100 / rows}%`,
width: `${100 / columns}%`,
});
const viewports = [];
const numViewports = numRows * numColumns;
if (viewportPropsArray && viewportPropsArray.length !== numViewports) {
reject(
new Error(
'viewportProps is supplied but its length is not equal to numViewports'
)
);
}
const viewportSpecificData = {};
for (let i = 0; i < numViewports; i++) {
viewports.push({});
viewportSpecificData[i] = displaySet;
viewportSpecificData[i].plugin = 'vtk';
}
const layout = {
viewports,
};
const viewportIndices = [0, 1, 2];
let updatedViewports = layout.viewports;
const apis = [];
viewportIndices.forEach(viewportIndex => {
apis[viewportIndex] = null;
/*const currentData = layout.viewports[viewportIndex];
if (currentData && currentData.plugin === 'vtk') {
reject(new Error('Should not have reached this point??'));
}*/
const data = {
// plugin: 'vtk',
viewports.forEach((viewport, index) => {
apis[index] = null;
const viewportProps = viewportPropsArray[index];
viewports[index] = Object.assign({}, viewports[index], {
vtk: {
mode: 'mpr', // TODO: not used
afterCreation: api => {
apis[viewportIndex] = api;
apis[index] = api;
if (apis.every(a => !!a)) {
resolve(apis);
}
},
...viewportProps,
},
};
updatedViewports = setSingleLayoutData(
updatedViewports,
viewportIndex,
data
);
});
});
setLayoutAndViewportData(
{ viewports: updatedViewports },
{
numRows,
numColumns,
viewports,
},
viewportSpecificData
);
});
@@ -1,12 +0,0 @@
export default function setSingleLayoutData(
originalArray,
viewportIndex,
data
) {
const viewports = originalArray.slice();
const layoutData = Object.assign({}, viewports[viewportIndex], data);
viewports[viewportIndex] = layoutData;
return viewports;
}
+11 -10
View File
@@ -1,9 +1,10 @@
import setLayoutAndViewportData from './setLayoutAndViewportData.js';
import setSingleLayoutData from './setSingleLayoutData.js';
export default function setViewportToVTK(
displaySet,
viewportIndex,
numRows,
numColumns,
layout,
viewportSpecificData
) {
@@ -13,7 +14,9 @@ export default function setViewportToVTK(
reject(new Error('Should not have reached this point??'));
}*/
const data = {
const viewports = layout.viewports.slice();
viewports[viewportIndex] = Object.assign({}, viewports[viewportIndex], {
// plugin: 'vtk',
vtk: {
mode: 'mpr', // TODO: not used
@@ -21,18 +24,16 @@ export default function setViewportToVTK(
resolve(api);
},
},
};
const updatedViewports = setSingleLayoutData(
layout.viewports,
viewportIndex,
data
);
});
const updatedViewportData = viewportSpecificData;
setLayoutAndViewportData(
{ viewports: updatedViewports },
{
numRows,
numColumns,
viewports,
},
updatedViewportData
);
});
+6 -1
View File
@@ -13,7 +13,6 @@
"scripts": {
"cm": "npx git-cz",
"build": "lerna run build:viewer --stream",
"build:e2e": "lerna run build:viewer:e2e --stream",
"build:ci": "lerna run build:viewer:ci --stream",
"build:demo": "lerna run build:viewer:demo --stream",
"build:package": "lerna run build:viewer:package --stream",
@@ -27,7 +26,9 @@
"test:unit": "jest --collectCoverage",
"test:unit:ci": "lerna run test:unit:ci --parallel --stream",
"test:e2e": "lerna run test:e2e --stream",
"test:e2e:ci": "lerna run test:e2e:ci --stream",
"test:e2e:dist": "lerna run test:e2e:dist --stream",
"test:e2e:serve": "lerna run test:e2e:serve --stream",
"see-changed": "lerna changed",
"docs:publish": "chmod +x ./build-and-publish-docs.sh && ./build-and-publish-docs.sh",
"release": "yarn run lerna:version && yarn run lerna:publish",
@@ -49,6 +50,7 @@
"@babel/plugin-transform-runtime": "^7.5.0",
"@babel/preset-env": "^7.5.0",
"@babel/preset-react": "^7.0.0",
"@percy/cypress": "^2.2.0",
"babel-eslint": "9.x",
"babel-loader": "^8.0.6",
"babel-plugin-inline-react-svg": "1.1.0",
@@ -57,12 +59,15 @@
"copy-webpack-plugin": "^5.0.3",
"cross-env": "^5.2.0",
"css-loader": "^3.2.0",
"dotenv": "^8.1.0",
"eslint": "5.16.0",
"eslint-config-prettier": "^6.4.0",
"eslint-config-react-app": "^4.0.1",
"eslint-plugin-flowtype": "2.x",
"eslint-plugin-import": "2.x",
"eslint-plugin-jsx-a11y": "6.x",
"eslint-plugin-node": "^9.1.0",
"eslint-plugin-prettier": "^3.1.1",
"eslint-plugin-promise": "^4.2.1",
"eslint-plugin-react": "7.x",
"eslint-plugin-react-hooks": "1.5.0",
+123
View File
@@ -3,6 +3,129 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [1.6.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.5.2...@ohif/core@1.6.0) (2019-10-26)
### Features
* Snapshot Download Tool ([#840](https://github.com/OHIF/Viewers/issues/840)) ([450e098](https://github.com/OHIF/Viewers/commit/450e0981a5ba054fcfcb85eeaeb18371af9088f8))
## [1.5.2](https://github.com/OHIF/Viewers/compare/@ohif/core@1.5.1...@ohif/core@1.5.2) (2019-10-25)
### Bug Fixes
* set SR in ActiveViewport by clicking thumb ([#1091](https://github.com/OHIF/Viewers/issues/1091)) ([986b7ae](https://github.com/OHIF/Viewers/commit/986b7ae2bf4f7d27f326e62f93285ce20eaf0a79))
## [1.5.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.5.0...@ohif/core@1.5.1) (2019-10-25)
### Bug Fixes
* 🐛 Orthographic MPR fix ([#1092](https://github.com/OHIF/Viewers/issues/1092)) ([460e375](https://github.com/OHIF/Viewers/commit/460e375f0aa75d35f7a46b4d48e6cc706019956d))
# [1.5.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.4.0...@ohif/core@1.5.0) (2019-10-25)
### Features
* 🎸 Allow routes to load Google Cloud DICOM Stores in the Study List ([#1069](https://github.com/OHIF/Viewers/issues/1069)) ([21b586b](https://github.com/OHIF/Viewers/commit/21b586b08f3dde6613859712a9e0577dece564db))
# [1.4.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.3.2...@ohif/core@1.4.0) (2019-10-15)
### Features
* 🎸 Only allow reconstruction of datasets that make sense ([#1010](https://github.com/OHIF/Viewers/issues/1010)) ([2d75e01](https://github.com/OHIF/Viewers/commit/2d75e01)), closes [#561](https://github.com/OHIF/Viewers/issues/561)
## [1.3.2](https://github.com/OHIF/Viewers/compare/@ohif/core@1.3.1...@ohif/core@1.3.2) (2019-10-14)
### Bug Fixes
* Return display sets in StudyMetadata._createDisplaySetsForSeries ([#1042](https://github.com/OHIF/Viewers/issues/1042)) ([fc01532](https://github.com/OHIF/Viewers/commit/fc01532))
## [1.3.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.3.0...@ohif/core@1.3.1) (2019-10-11)
**Note:** Version bump only for package @ohif/core
# [1.3.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.2.0...@ohif/core@1.3.0) (2019-10-11)
### Features
* 🎸 Improve usability of Google Cloud adapter, including direct routes to studies ([#989](https://github.com/OHIF/Viewers/issues/989)) ([2bc361c](https://github.com/OHIF/Viewers/commit/2bc361c))
# [1.2.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.1.0...@ohif/core@1.2.0) (2019-10-09)
### Bug Fixes
* OHIF-1002 Study lazy load should be true by default ([#1004](https://github.com/OHIF/Viewers/issues/1004)) ([66d8bc6](https://github.com/OHIF/Viewers/commit/66d8bc6))
### Features
* Allow a server requestOptions.auth to be a function that returns the Authorization header. ([#928](https://github.com/OHIF/Viewers/issues/928)) ([0064a4b](https://github.com/OHIF/Viewers/commit/0064a4b))
# [1.1.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.0.2...@ohif/core@1.1.0) (2019-10-03)
### Features
* Use QIDO + WADO to load series metadata individually rather than the entire study metadata at once ([#953](https://github.com/OHIF/Viewers/issues/953)) ([9e10c2b](https://github.com/OHIF/Viewers/commit/9e10c2b))
## [1.0.2](https://github.com/OHIF/Viewers/compare/@ohif/core@1.0.1...@ohif/core@1.0.2) (2019-10-02)
### Bug Fixes
* Temporarily sort SEG files to the end of the display set list as a workaround for several metadata issues ([#987](https://github.com/OHIF/Viewers/issues/987)) ([b3b4c10](https://github.com/OHIF/Viewers/commit/b3b4c10))
## [1.0.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.0.0...@ohif/core@1.0.1) (2019-09-27)
+1 -1
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/core",
"version": "1.0.1",
"version": "1.6.0",
"description": "Generic business logic for web-based medical imaging applications",
"author": "OHIF Core Team",
"license": "MIT",
@@ -9,7 +9,7 @@ import user from '../user';
* @export
* @param {Object} [server={}]
* @param {Object} [server.requestOptions]
* @param {string} [server.requestOptions.auth]
* @param {string|function} [server.requestOptions.auth]
* @returns {Object} { Authorization }
*/
export default function getAuthorizationHeader({ requestOptions } = {}) {
@@ -19,8 +19,13 @@ export default function getAuthorizationHeader({ requestOptions } = {}) {
const accessToken = user && user.getAccessToken && user.getAccessToken();
if (requestOptions && requestOptions.auth) {
// HTTP Basic Auth (user:password)
headers.Authorization = `Basic ${btoa(requestOptions.auth)}`;
if (typeof requestOptions.auth === 'function') {
// Custom Auth Header
headers.Authorization = requestOptions.auth(requestOptions);
} else {
// HTTP Basic Auth (user:password)
headers.Authorization = `Basic ${btoa(requestOptions.auth)}`;
}
} else if (accessToken) {
headers.Authorization = `Bearer ${accessToken}`;
}
@@ -7,10 +7,7 @@ describe('getAuthorizationHeader', () => {
it('should return a HTTP Basic Auth when server contains requestOptions.auth', () => {
const validServer = {
requestOptions: {
auth: {
user: 'dummy_user',
password: 'dummy_password',
},
auth: 'dummy_user:dummy_password',
},
};
@@ -26,9 +23,7 @@ describe('getAuthorizationHeader', () => {
it('should return a HTTP Basic Auth when server contains requestOptions.auth even though there is no password', () => {
const validServerWithoutPassword = {
requestOptions: {
auth: {
user: 'dummy_user',
},
auth: 'dummy_user',
},
};
@@ -43,22 +38,19 @@ describe('getAuthorizationHeader', () => {
expect(authentication).toEqual(expectedAuthorizationHeader);
});
it('should return a HTTP Basic Auth when server contains requestOptions.auth even though there is no username', () => {
const validServerWithoutPassword = {
it('should return a HTTP Basic Auth when server contains requestOptions.auth custom function', () => {
const validServerCustomAuth = {
requestOptions: {
auth: {
user: 'dummy_user',
},
auth: options => `Basic ${options.token}`,
token: 'ZHVtbXlfdXNlcjpkdW1teV9wYXNzd29yZA==',
},
};
const expectedAuthorizationHeader = {
Authorization: `Basic ${btoa(
validServerWithoutPassword.requestOptions.auth
)}`,
Authorization: `Basic ${validServerCustomAuth.requestOptions.token}`,
};
const authentication = getAuthorizationHeader(validServerWithoutPassword);
const authentication = getAuthorizationHeader(validServerCustomAuth);
expect(authentication).toEqual(expectedAuthorizationHeader);
});
@@ -1,10 +1,12 @@
// import { api } from 'dicomweb-client'
const api = {
DICOMwebClient: jest.fn().mockImplementation(() => {
return {
retrieveStudyMetadata: jest.fn().mockResolvedValue([]),
};
DICOMwebClient: jest.fn().mockImplementation(function() {
this.retrieveStudyMetadata = jest.fn().mockResolvedValue([]);
this.retrieveSeriesMetadata = jest.fn(function(options) {
const { studyInstanceUID, seriesInstanceUID } = options;
return Promise.resolve([{ studyInstanceUID, seriesInstanceUID }]);
});
}),
};
-167
View File
@@ -1,167 +0,0 @@
# Table of contents
In this document, some important objects are described. In the files there are comments that can help better undestand their methods and properties.
- [ResizeViewportManager object](#the-resize-viewport-manager-object)
- [ImageSet object](#the-image-set-object)
- [Layout Manager](#the-layout-manager-object)
- [Type Safe Collections](#the-type-safe-collections)
# The Resize Viewport Manager object
This object has multiple functions to manage window resize event. It relocates Dialogs, resizes viewport elements and scrollbars and some other UI components such as Study and Series Quick Switch, when available.
## Usage
It's only necessary to bind **handleResize** function to the window resize event as follows. The **ohif:viewerbase** package needs to be imported by the referring code as well.
```javascript
import { Viewerbase } from 'meteor/ohif:viewerbase';
const ResizeViewportManager = new Viewerbase.ResizeViewportManager();
window.addEventListener('resize', ResizeViewportManager.getResizeHandler());
```
An example os its usage can be found in **ohif-viewerbase/client/components/viewer/viewerMain/viewerMain.js**.
# The Image Set object
An object that represents a list of images that are associated by any arbitrary criteria being thus content agnostic. Besides the main attributes (**images** and **uid**) it allows additional attributes to be appended to it (currently indiscriminately, but this should be changed).
## Usage
ImageSet constructor requires an array of SOP instances like in the example below. It's necessary to import **ohif:viewerbase**.
```javascript
import { Viewerbase } from 'meteor/ohif:viewerbase';
const imageSet = new Viewerbase.ImageSet(sopInstances);
imageSet.setAttributes({
displaySetInstanceUid: imageSet.uid,
seriesInstanceUid: seriesData.seriesInstanceUid,
seriesNumber: seriesData.seriesNumber,
seriesDescription: seriesData.seriesDescription,
numImageFrames: instances.length,
frameRate: instance.getRawValue('x00181063'),
modality: seriesData.modality,
isMultiFrame: isMultiFrame(instance)
});
// Sort instances by InstanceNumber (0020,0013)
imageSet.sortBy((a, b) => {
return (parseInt(a.getRawValue('x00200013', 0)) || 0) - (parseInt(b.getRawValue('x00200013', 0)) || 0);
});
```
Each SOP instance in this example is an instance of **OHIFInstanceMetadata** object, which is a specialization of **InstanceMetadata**. To read more about the **Metadata API** click [here](metadata/).
# The Layout Manager object
Objects of this class are responsible for creating, organizing and maintaining (manage) viewport rendering. It creates a grid, positioning viewports accordingly to it's configuration keeping all viewports data (in **viewportData** property) for easy access from other components. It support many layout configurations and some of them were fully tested: 1x1, 1x2, 1x3, 2x1, 2x2, 2x3, 3x1, 3x2, 3x3. Other configurations may work as well.
Finally it provides some useful functions to move through viewports and zoom it.
## Usage
In order to use _LayoutManager_ the **ohif:viewerbase** package needs to be imported by the referring code and instantiated as follows. An example os its usage is in **ohif-viewerbase/client/components/viewer/viewerMain/viewerMain.js**.
```javascript
import { Viewerbase } from 'meteor/ohif:viewerbase';
// Get an array of studies object. This function needs to be implemented, it does not exist.
const studies = getArrayOfStudiesObjects();
const parentElement = document.getElementById('layoutManagerTarget');
const LayoutManager = new Viewerbase.LayoutManager(parentElement, studies);
```
The default configuration is 1x1, and to change it just set **layoutProps** and call **updateViewports** to update the layout as follows.
```javascript
import { Viewerbase } from 'meteor/ohif:viewerbase';
// Get an array of studies object. This function needs to be implemented, it does not exist.
const studies = getArrayOfStudiesObjects();
const parentElement = document.getElementById('layoutManagerTarget');
const LayoutManager = new LayoutManager(parentElement, studies);
// Set the layout proprerties to 2x2 layout
LayoutManager.layoutProps = {
rows: 2,
columns: 2
};
// It will render four viewports: two in each row.
LayoutManager.updateViewports();
```
The layoutManagerTarget element will have a new class **layout-2-2** (to allow further styling) and it's inner content will a new div#imageViewerViewports that has four inner elements like the following (some elements and attributes were removed for example purpose):
```html
<div class="viewportContainer active" style="height:50%; width:50%;">
<div class="removable">
<div class="imageViewerViewport">
<canvas></canvas>
</div>
<div class="imageViewerViewportOverlay"></div>
<div class="imageViewerLoadingIndicator"></div>
<div class="imageViewerErrorLoadingIndicator"></div>
<div class="viewportOrientationMarkers"></div>
</div>
</div>
```
Each of this _div.viewportContainer_ will have some classes to help CSS specific styling accordingly to the element's position in the grid: **top**, **middle** and **bottom**. This classes are added by **viewer/components/gridLayout/** component in ohif-viewerbase package.
# The Type Safe Collections
With the introduction of the new _Study Metadata API_ in which study metadata is represented by class hierarchies (using prototype-based inheritance), the usage of standard _Minimongo_ collections as a central client-side storage for this data became no longer an option. Standard _Mongo_ and _Minimongo_ collections internally _flatten_ data (in other words, data gets serialized) before storage hence no functions or prototype chains are preserved. In that scenario, when an object is restored (fetched), what is returned is actually a flattened copy of the original object with no functions or prototype (it's no longer an instance of it's original class). As an attempt to overcome this limitation a new type of collection was intruduced: the *TypeSafeCollection*.
The `TypeSafeCollection` is a simple list-like collection which tries to implement an API _similar_ but not compatible with _Mongo_'s API. It supports basic features like search by attribute map and ID, retrieval by index, sorting of result sets, insertion, removal and reactive operations but, unlike _Mongo_'s API, it (still) lacks support to advanced functionality like complex search criterea or flexible sorting options.
## Implementation
The `TypeSafeCollection` is implemented on top of the _JavaScript_ `Array` object. Each element inserted in the collection is appended to the end of its internal array as a _key-value pair (KVP)_ object where the _key_ is a unique randomly generated ID string and the _value_ is the element itself. Once the object has been successfully stored, the generated ID (its ID) is returned to the client code and can later be used to access that specific element. At this point, an important difference to the _Minimongo_ API can be highlighted: a _TypeSafeCollection_ instance will never make any changes to the stored element (e.g., no "\_id" property will ever be assigned to the original object). Another relevant feature that is supported by this design decision is that _not only objects_ can be stored in this collections, but literally _anything_.
Inside the codebase, the _value_ attribute of each _KVP_ entry in the collection is refered to as _the **payload** of the entry_ since it's what really matters to the user. Hence, this term will also be used here to refer to the _value that has been stored in the collection_. That being said, we can approach another important feature of these collections: A single _payload_ cannot be stored more than once in a given collection. When an attempt of inserting a _payload_ which is already present in the collection is detected, the insert operation will fail and `null` will be returned. In that regard, the collection behaves like `Set` object not permitting a payload to be stored more than once. Strict equality is used when comparing payloads, thus cloned objects are not considered the same. This feature adds an additional garantee that a given study/series/instance will not be listed more than once (it was designed as a replacement for central study collections which were always checked for duplicates).
Please refer to the codebase for the full `TypeSafeCollection` API.
## Usage
In order to use the `TypeSafeCollection` class, the **ohif:viewerbase** package needs to be imported by the referring code and instantiated as follows:
```javascript
import { Viewerbase } from 'meteor/ohif:viewerbase'; // i.e., Viewerbase.TypeSafeCollection
OR
import 'meteor/ohif:viewerbase'; // i.e., OHIF.viewerbase.TypeSafeCollection
// The later is preferred when the client code already makes use of the "OHIF" namespace making the second
// "import" a garantee that the ".viewerbase" namespace has been properly loaded.
```
A few usage examples:
```javascript
const Users = new OHIF.viewerbase.TypeSafeCollection();
[[ ... ]]
// Insert a User object...
let userId = Users.insert({
data: {
firstName: 'John',
lastName: 'Doe',
age: 45
},
getFullName() {
return `${this.data.firstName} ${this.data.lastName}`;
},
getAge() {
return this.data.age;
}
});
[[ ... ]]
let theUserWeJustStored = Users.findById(userId); // ;-)
[[ ... ]]
// Retrieve a single user with "Doe" as `lastName`...
let myUser = Users.findBy({ 'data.lastName': 'Doe' });
// Or all users with "Doe" as `lastName`, sorted by `firstName` in ascending
// order and using the `age` attribute to break ties in descending order...
let myUsers = Users.findAllBy({ 'data.lastName': 'Doe' }, {
sort: [ [ 'data.firstName', 'asc' ], [ 'data.age', 'desc' ] ]
});
```
@@ -8,7 +8,9 @@ import { SeriesMetadata } from './SeriesMetadata';
// - createStacks
import { api } from 'dicomweb-client';
// - createStacks
import { isImage } from './../../utils/isImage';
import { isImage } from '../../utils/isImage';
import isDisplaySetReconstructable from '../../utils/isDisplaySetReconstructable';
import isLowPriorityModality from '../../utils/isLowPriorityModality';
export class StudyMetadata extends Metadata {
constructor(data, uid) {
@@ -88,6 +90,101 @@ export class StudyMetadata extends Metadata {
return this._displaySets.slice();
}
/**
* Split a series metadata object into display sets
* @param {Array} sopClassHandlerModules List of SOP Class Modules
* @param {SeriesMetadata} series The series metadata object from which the display sets will be created
* @param {Array} [givenDisplaySets] An optional list to which the display sets will be appended
* @returns {Array} The list of display sets created for the given series object
*/
_createDisplaySetsForSeries(
sopClassHandlerModules,
series,
givenDisplaySets
) {
const study = this;
const displaySets = Array.isArray(givenDisplaySets) ? givenDisplaySets : [];
const anyInstances = series.getInstanceCount() > 0;
if (!anyInstances) {
return;
}
const sopClassUids = getSopClassUids(series);
if (sopClassHandlerModules && sopClassHandlerModules.length > 0) {
const displaySet = _getDisplaySetFromSopClassModule(
sopClassHandlerModules,
series,
study,
sopClassUids
);
if (displaySet) {
displaySet.sopClassModule = true;
displaySets.push(displaySet);
return displaySets;
}
}
// WE NEED A BETTER WAY TO NOTE THAT THIS IS THE DEFAULT BEHAVIOR FOR LOADING
// A DISPLAY SET IF THERE IS NO MATCHING SOP CLASS PLUGIN
// Search through the instances (InstanceMetadata object) of this series
// Split Multi-frame instances and Single-image modalities
// into their own specific display sets. Place the rest of each
// series into another display set.
const stackableInstances = [];
series.forEachInstance(instance => {
// All imaging modalities must have a valid value for sopClassUid (x00080016) or rows (x00280010)
if (
!isImage(instance.getRawValue('x00080016')) &&
!instance.getRawValue('x00280010')
) {
return;
}
let displaySet;
if (isMultiFrame(instance)) {
displaySet = makeDisplaySet(series, [instance]);
displaySet.setAttributes({
sopClassUids,
isClip: true,
seriesInstanceUid: series.getSeriesInstanceUID(),
studyInstanceUid: study.getStudyInstanceUID(), // Include the study instance Uid for drag/drop purposes
numImageFrames: instance.getRawValue('x00280008'), // Override the default value of instances.length
instanceNumber: instance.getRawValue('x00200013'), // Include the instance number
acquisitionDatetime: instance.getRawValue('x0008002a'), // Include the acquisition datetime
});
displaySets.push(displaySet);
} else if (isSingleImageModality(instance.modality)) {
displaySet = makeDisplaySet(series, [instance]);
displaySet.setAttributes({
sopClassUids,
studyInstanceUid: study.getStudyInstanceUID(), // Include the study instance Uid
seriesInstanceUid: series.getSeriesInstanceUID(),
instanceNumber: instance.getRawValue('x00200013'), // Include the instance number
acquisitionDatetime: instance.getRawValue('x0008002a'), // Include the acquisition datetime
});
displaySets.push(displaySet);
} else {
stackableInstances.push(instance);
}
});
if (stackableInstances.length) {
const displaySet = makeDisplaySet(series, stackableInstances);
displaySet.setAttribute('studyInstanceUid', study.getStudyInstanceUID());
displaySet.setAttributes({
sopClassUids,
});
displaySets.push(displaySet);
}
return displaySets;
}
/**
* Creates a set of series to be placed in the Study Metadata
* The series that appear in the Study Metadata must represent
@@ -101,104 +198,44 @@ export class StudyMetadata extends Metadata {
* @returns {Array} An array of series to be placed in the Study Metadata
*/
createDisplaySets(sopClassHandlerModules) {
const study = this;
const displaySets = [];
const anyDisplaySets = study.getSeriesCount();
const anySopClassHandlerModules =
sopClassHandlerModules && sopClassHandlerModules.length > 0;
const anyDisplaySets = this.getSeriesCount();
if (!anyDisplaySets) {
return displaySets;
}
// Loop through the series (SeriesMetadata)
this.forEachSeries(series => {
const anyInstances = series.getInstanceCount() > 0;
if (!anyInstances) {
return;
}
const sopClassUids = getSopClassUids(series);
if (anySopClassHandlerModules) {
const displaySet = _getDisplaySetFromSopClassModule(
this.forEachSeries(
series =>
void this._createDisplaySetsForSeries(
sopClassHandlerModules,
series,
study,
sopClassUids
);
displaySets
)
);
if (displaySet) {
displaySet.sopClassModule = true;
displaySets.push(displaySet);
return sortDisplaySetList(displaySets);
}
return;
}
}
sortDisplaySets() {
sortDisplaySetList(this._displaySets);
}
// WE NEED A BETTER WAY TO NOTE THAT THIS IS THE DEFAULT BEHAVIOR FOR LOADING
// A DISPLAY SET IF THERE IS NO MATCHING SOP CLASS PLUGIN
// Search through the instances (InstanceMetadata object) of this series
// Split Multi-frame instances and Single-image modalities
// into their own specific display sets. Place the rest of each
// series into another display set.
const stackableInstances = [];
series.forEachInstance(instance => {
// All imaging modalities must have a valid value for sopClassUid (x00080016) or rows (x00280010)
if (
!isImage(instance.getRawValue('x00080016')) &&
!instance.getRawValue('x00280010')
) {
return;
}
let displaySet;
if (isMultiFrame(instance)) {
displaySet = makeDisplaySet(series, [instance]);
displaySet.setAttributes({
sopClassUids,
isClip: true,
seriesInstanceUid: series.getSeriesInstanceUID(),
studyInstanceUid: study.getStudyInstanceUID(), // Include the study instance Uid for drag/drop purposes
numImageFrames: instance.getRawValue('x00280008'), // Override the default value of instances.length
instanceNumber: instance.getRawValue('x00200013'), // Include the instance number
acquisitionDatetime: instance.getRawValue('x0008002a'), // Include the acquisition datetime
});
displaySets.push(displaySet);
} else if (isSingleImageModality(instance.modality)) {
displaySet = makeDisplaySet(series, [instance]);
displaySet.setAttributes({
sopClassUids,
studyInstanceUid: study.getStudyInstanceUID(), // Include the study instance Uid
seriesInstanceUid: series.getSeriesInstanceUID(),
instanceNumber: instance.getRawValue('x00200013'), // Include the instance number
acquisitionDatetime: instance.getRawValue('x0008002a'), // Include the acquisition datetime
});
displaySets.push(displaySet);
} else {
stackableInstances.push(instance);
}
});
if (stackableInstances.length) {
const displaySet = makeDisplaySet(series, stackableInstances);
displaySet.setAttribute(
'studyInstanceUid',
study.getStudyInstanceUID()
);
displaySet.setAttributes({
sopClassUids,
});
displaySets.push(displaySet);
}
});
// TODO
displaySets.sort(_sortBySeriesNumber);
return displaySets;
/**
* Method to append display sets from a given series to the internal list of display sets
* @param {Array} sopClassHandlerModules A list of SOP Class Handler Modules
* @param {SeriesMetadata} series The series metadata object from which the display sets will be created
* @returns {boolean} Returns true on success or false on failure (e.g., the series does not belong to this study)
*/
createAndAddDisplaySetsForSeries(sopClassHandlerModules, series) {
if (this.containsSeries(series)) {
this.setDisplaySets(
this._createDisplaySetsForSeries(sopClassHandlerModules, series)
);
return true;
}
return false;
}
/**
@@ -206,7 +243,10 @@ export class StudyMetadata extends Metadata {
* @param {Array} displaySets Array of display sets (ImageSet[])
*/
setDisplaySets(displaySets) {
displaySets.forEach(displaySet => this.addDisplaySet(displaySet));
if (Array.isArray(displaySets) && displaySets.length > 0) {
displaySets.forEach(displaySet => this.addDisplaySet(displaySet));
this.sortDisplaySets();
}
}
/**
@@ -320,6 +360,12 @@ export class StudyMetadata extends Metadata {
return found;
}
containsSeries(series) {
return (
series instanceof SeriesMetadata && this._series.indexOf(series) >= 0
);
}
/**
* Retrieve the number of series within the current study.
* @returns {number} The number of series in the current study.
@@ -576,6 +622,16 @@ const makeDisplaySet = (series, instances) => {
imageSet.getImage(0).getRawValue('x00200013')
);
const isReconstructable = isDisplaySetReconstructable(series, instances);
imageSet.isReconstructable = isReconstructable.value;
if (isReconstructable.missingFrames) {
// TODO -> This is currently unused, but may be used for reconstructing
// Volumes with gaps later on.
imageSet.missingFrames = isReconstructable.missingFrames;
}
return imageSet;
};
@@ -650,13 +706,51 @@ function _getDisplaySetFromSopClassModule(
}
/**
* Sort series primarily by modality (i.e., series with references to other
* series like SEG, KO or PR are grouped in the end of the list) and then by
* series number:
*
* --------
* | CT #3 |
* | CT #4 |
* | CT #5 |
* --------
* | SEG #1 |
* | SEG #2 |
* --------
*
* @param {*} a - DisplaySet
* @param {*} b - DisplaySet
*/
function _sortBySeriesNumber(a, b) {
function seriesSortingCriteria(a, b) {
const isLowPriorityA = isLowPriorityModality(a.modality);
const isLowPriorityB = isLowPriorityModality(b.modality);
if (!isLowPriorityA && isLowPriorityB) {
return -1;
}
if (isLowPriorityA && !isLowPriorityB) {
return 1;
}
return sortBySeriesNumber(a, b);
}
/**
* Sort series by series number. Series with low
* @param {*} a - DisplaySet
* @param {*} b - DisplaySet
*/
function sortBySeriesNumber(a, b) {
const seriesNumberAIsGreaterOrUndefined =
a.seriesNumber > b.seriesNumber || (!a.seriesNumber && b.seriesNumber);
return seriesNumberAIsGreaterOrUndefined ? 1 : -1;
}
/**
* Sorts a list of display set objects
* @param {Array} list A list of display sets to be sorted
*/
function sortDisplaySetList(list) {
return list.sort(seriesSortingCriteria);
}
@@ -504,12 +504,12 @@ export default class ProtocolEngine {
/**
* Sets the current layout
*
* @param rows
* @param columns
* @param {number} numRows
* @param {number} numColumns
*/
setLayout(rows, columns) {
if (rows < 1 && columns < 1) {
log.error(`Invalid layout ${rows} x ${columns}`);
setLayout(numRows, numColumns) {
if (numRows < 1 && numColumns < 1) {
log.error(`Invalid layout ${numRows} x ${numColumns}`);
return;
}
@@ -519,16 +519,13 @@ export default class ProtocolEngine {
}
let viewports = [];
const numViewports = rows * columns;
const numViewports = numRows * numColumns;
for (let i = 0; i < numViewports; i++) {
viewports.push({
height: `${100 / rows}%`,
width: `${100 / columns}%`,
});
viewports.push({});
}
this.options.setLayout({ viewports });
this.options.setLayout({ numRows, numColumns, viewports });
}
/**
@@ -634,14 +631,10 @@ export default class ProtocolEngine {
//console.log('renderedCallback for ' + element.id);
customSettings.forEach(customSetting => {
log.trace(
`ProtocolEngine::currentViewportData.renderedCallback Applying custom setting: ${
customSetting.id
}`
`ProtocolEngine::currentViewportData.renderedCallback Applying custom setting: ${customSetting.id}`
);
log.trace(
`ProtocolEngine::currentViewportData.renderedCallback with value: ${
customSetting.value
}`
`ProtocolEngine::currentViewportData.renderedCallback with value: ${customSetting.value}`
);
const setting = CustomViewportSettings[customSetting.id];
+27 -8
View File
@@ -26,9 +26,34 @@ export const setViewportActive = viewportIndex => ({
viewportIndex,
});
export const setLayout = layout => ({
/**
* @param {object} layout
* @param {number} layout.numRows
* @param {number} layout.numColumns
* @param {array} layout.viewports
*/
export const setLayout = ({ numRows, numColumns, viewports }) => ({
type: SET_VIEWPORT_LAYOUT,
layout,
numRows,
numColumns,
viewports,
});
/**
* @param {object} layout
* @param {number} layout.numRows
* @param {number} layout.numColumns
* @param {array} layout.viewports
*/
export const setViewportLayoutAndData = (
{ numRows, numColumns, viewports },
viewportSpecificData
) => ({
type: SET_VIEWPORT_LAYOUT_AND_DATA,
numRows,
numColumns,
viewports,
viewportSpecificData,
});
export const clearViewportSpecificData = viewportIndex => ({
@@ -87,12 +112,6 @@ export const setServers = servers => ({
servers,
});
export const setViewportLayoutAndData = (layout, viewportSpecificData) => ({
type: SET_VIEWPORT_LAYOUT_AND_DATA,
layout,
viewportSpecificData,
});
const actions = {
// VIEWPORT
setViewportActive,
+11 -10
View File
@@ -94,19 +94,20 @@ describe('actions', () => {
});
it('should create an action to set the viewport layout', () => {
const layout = {
viewports: [
{
height: '100%',
width: '100%',
},
],
};
const numRows = 1;
const numColumns = 2;
const viewports = [{ plugin: 'vtk' }, { plugin: 'vtk' }];
const expectedAction = {
type: types.SET_VIEWPORT_LAYOUT,
layout,
numRows,
numColumns,
viewports,
};
expect(actions.setLayout(layout)).toEqual(expectedAction);
expect(actions.setLayout({ numRows, numColumns, viewports })).toEqual(
expectedAction
);
});
});
});
+2
View File
@@ -1,11 +1,13 @@
import actions from './actions.js';
import reducers from './reducers';
import localStorage from './localStorage.js';
import sessionStorage from './sessionStorage.js';
const redux = {
reducers,
actions,
localStorage,
sessionStorage,
};
export default redux;
+1 -1
View File
@@ -2,7 +2,7 @@ import redux from './index.js';
describe('redux exports', () => {
test('have not changed', () => {
const expectedExports = ['actions', 'reducers', 'localStorage'].sort();
const expectedExports = ['actions', 'reducers', 'localStorage', 'sessionStorage'].sort();
const exports = Object.keys(redux).sort();
+4 -2
View File
@@ -1,6 +1,8 @@
const LocalStorageApi = window.localStorage;
const localStorageKey = 'state';
export const loadState = () => {
try {
const serializedState = window.localStorage.getItem('state');
const serializedState = LocalStorageApi.getItem(localStorageKey);
if (!serializedState) {
return undefined;
}
@@ -14,7 +16,7 @@ export const loadState = () => {
export const saveState = state => {
try {
const serializedState = JSON.stringify(state);
localStorage.setItem('state', serializedState);
LocalStorageApi.setItem(localStorageKey, serializedState);
} catch (e) {}
};
+37 -14
View File
@@ -12,13 +12,13 @@ import cloneDeep from 'lodash.clonedeep';
import merge from 'lodash.merge';
const defaultState = {
numRows: 1,
numColumns: 1,
activeViewportIndex: 0,
layout: {
viewports: [
{
// plugin: 'cornerstone',
height: '100%',
width: '100%',
},
],
},
@@ -34,21 +34,34 @@ const defaultState = {
* @param {Object} [action.viewportSpecificData]
*/
const viewports = (state = defaultState, action) => {
let currentData;
let viewportSpecificData;
let useActiveViewport = false;
switch (action.type) {
case SET_VIEWPORT_LAYOUT_AND_DATA:
return Object.assign({}, state, {
viewportSpecificData: action.viewportSpecificData,
layout: action.layout,
});
case SET_VIEWPORT_ACTIVE:
return Object.assign({}, state, {
activeViewportIndex: action.viewportIndex,
});
case SET_VIEWPORT_LAYOUT:
return Object.assign({}, state, { layout: action.layout });
case SET_VIEWPORT_LAYOUT: {
const { numRows, numColumns, viewports } = action;
const layout = {
viewports: [...viewports],
};
return Object.assign({}, state, { numRows, numColumns, layout });
}
case SET_VIEWPORT_LAYOUT_AND_DATA: {
const { numRows, numColumns, viewports, viewportSpecificData } = action;
const layout = {
viewports: [...viewports],
};
return Object.assign({}, state, {
numRows,
numColumns,
layout,
viewportSpecificData: cloneDeep(viewportSpecificData),
});
}
case SET_VIEWPORT: {
const layout = cloneDeep(state.layout);
const hasPlugin = action.data && action.data.plugin;
@@ -71,14 +84,24 @@ const viewports = (state = defaultState, action) => {
// Allow fall-through
// eslint-disable-next-line
case SET_SPECIFIC_DATA: {
const layout = cloneDeep(state.layout);
const hasPlugin = action.data && action.data.plugin;
const viewportIndex = useActiveViewport
? state.activeViewportIndex
: action.viewportIndex;
currentData = cloneDeep(state.viewportSpecificData[viewportIndex]) || {};
viewportSpecificData = cloneDeep(state.viewportSpecificData);
viewportSpecificData[viewportIndex] = merge({}, currentData, action.data);
const { dom } = state.viewportSpecificData[viewportIndex];
return Object.assign({}, state, { viewportSpecificData });
viewportSpecificData = cloneDeep(state.viewportSpecificData);
viewportSpecificData[viewportIndex] = {
dom,
...action.data,
};
if (hasPlugin) {
layout.viewports[viewportIndex].plugin = action.data.plugin;
}
return Object.assign({}, state, { layout, viewportSpecificData });
}
case CLEAR_VIEWPORT:
viewportSpecificData = cloneDeep(state.viewportSpecificData);
@@ -6,13 +6,10 @@ describe('viewports reducer', () => {
it('should return the initial state', () => {
expect(reducer(undefined, {})).toEqual({
activeViewportIndex: 0,
numRows: 1,
numColumns: 1,
layout: {
viewports: [
{
height: '100%',
width: '100%',
},
],
viewports: [{}],
},
viewportSpecificData: {},
});
@@ -34,23 +31,25 @@ describe('viewports reducer', () => {
it('should handle SET_VIEWPORT_LAYOUT', () => {
const setViewportLayoutAction = {
type: types.SET_VIEWPORT_LAYOUT,
layout: {
viewports: [
{
height: '100%',
width: '50%',
},
{
height: '100%',
width: '50%',
},
],
},
numRows: 1,
numColumns: 2,
viewports: [
{
plugin: 'cornerstone',
},
{
plugin: 'vtk',
},
],
};
const updatedState = reducer({}, setViewportLayoutAction);
expect(updatedState.layout).toEqual(setViewportLayoutAction.layout);
expect(updatedState.numRows).toEqual(setViewportLayoutAction.numRows);
expect(updatedState.numColumns).toEqual(setViewportLayoutAction.numColumns);
expect(updatedState.layout.viewports).toEqual(
setViewportLayoutAction.viewports
);
});
// If there were previous keys, this would have
+28
View File
@@ -0,0 +1,28 @@
const SessionStorageApi = window.sessionStorage;
const sessionStorageKey = 'state';
export const loadState = () => {
try {
const serializedState = SessionStorageApi.getItem(sessionStorageKey);
if (!serializedState) {
return undefined;
}
return JSON.parse(serializedState);
} catch (e) {
return undefined;
}
};
export const saveState = state => {
try {
const serializedState = JSON.stringify(state);
SessionStorageApi.setItem(sessionStorageKey, serializedState);
} catch (e) {}
};
const sessionStorage = {
saveState,
loadState,
};
export default sessionStorage;
@@ -1,5 +1,8 @@
import { api } from 'dicomweb-client';
import DICOMWeb from '../../../DICOMWeb/';
import isLowPriorityModality from '../../../utils/isLowPriorityModality';
const INFO = Symbol('INFO');
const WADOProxy = {
convertURL: (url, server) => {
@@ -94,9 +97,7 @@ function buildInstanceWadoRsUri(
seriesInstanceUid,
sopInstanceUid
) {
return `${
server.wadoRoot
}/studies/${studyInstanceUid}/series/${seriesInstanceUid}/instances/${sopInstanceUid}`;
return `${server.wadoRoot}/studies/${studyInstanceUid}/series/${seriesInstanceUid}/instances/${sopInstanceUid}`;
}
function buildInstanceFrameWadoRsUri(
@@ -166,9 +167,9 @@ function getPaletteColor(server, instance, tag, lutDescriptor) {
};
const arrayBufferToPaletteColorLUT = result => {
const arraybuffer = result[0]
const byteArray = new Uint8Array(arraybuffer)
const lut = []
const arraybuffer = result[0];
const byteArray = new Uint8Array(arraybuffer);
const lut = [];
for (let i = 0; i < numLutEntries; i++) {
if (bits === 16) {
@@ -271,200 +272,338 @@ function getRadiopharmaceuticalInfo(instance) {
};
}
async function makeSOPInstance(server, study, instance) {
const { studyInstanceUid } = study;
const seriesInstanceUid = DICOMWeb.getString(instance['0020000E']);
let series = study.seriesMap[seriesInstanceUid];
if (!series) {
series = {
seriesInstanceUid,
seriesDescription: DICOMWeb.getString(instance['0008103E']),
modality: DICOMWeb.getString(instance['00080060']),
seriesNumber: DICOMWeb.getNumber(instance['00200011']),
seriesDate: DICOMWeb.getString(instance['00080021']),
seriesTime: DICOMWeb.getString(instance['00080031']),
instances: [],
};
study.seriesMap[seriesInstanceUid] = series;
study.seriesList.push(series);
}
const sopInstanceUid = DICOMWeb.getString(instance['00080018']);
const wadouri = buildInstanceWadoUrl(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const baseWadoRsUri = buildInstanceWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const wadorsuri = buildInstanceFrameWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const sopInstance = {
imageType: DICOMWeb.getString(instance['00080008']),
sopClassUid: DICOMWeb.getString(instance['00080016']),
modality: DICOMWeb.getString(instance['00080060']),
sopInstanceUid,
instanceNumber: DICOMWeb.getNumber(instance['00200013']),
imagePositionPatient: DICOMWeb.getString(instance['00200032']),
imageOrientationPatient: DICOMWeb.getString(instance['00200037']),
frameOfReferenceUID: DICOMWeb.getString(instance['00200052']),
sliceLocation: DICOMWeb.getNumber(instance['00201041']),
samplesPerPixel: DICOMWeb.getNumber(instance['00280002']),
photometricInterpretation: DICOMWeb.getString(instance['00280004']),
planarConfiguration: DICOMWeb.getNumber(instance['00280006']),
rows: DICOMWeb.getNumber(instance['00280010']),
columns: DICOMWeb.getNumber(instance['00280011']),
pixelSpacing: DICOMWeb.getString(instance['00280030']),
pixelAspectRatio: DICOMWeb.getString(instance['00280034']),
bitsAllocated: DICOMWeb.getNumber(instance['00280100']),
bitsStored: DICOMWeb.getNumber(instance['00280101']),
highBit: DICOMWeb.getNumber(instance['00280102']),
pixelRepresentation: DICOMWeb.getNumber(instance['00280103']),
smallestPixelValue: DICOMWeb.getNumber(instance['00280106']),
largestPixelValue: DICOMWeb.getNumber(instance['00280107']),
windowCenter: DICOMWeb.getString(instance['00281050']),
windowWidth: DICOMWeb.getString(instance['00281051']),
rescaleIntercept: DICOMWeb.getNumber(instance['00281052']),
rescaleSlope: DICOMWeb.getNumber(instance['00281053']),
rescaleType: DICOMWeb.getNumber(instance['00281054']),
sourceImageInstanceUid: getSourceImageInstanceUid(instance),
laterality: DICOMWeb.getString(instance['00200062']),
viewPosition: DICOMWeb.getString(instance['00185101']),
acquisitionDateTime: DICOMWeb.getString(instance['0008002A']),
numberOfFrames: DICOMWeb.getNumber(instance['00280008']),
frameIncrementPointer: getFrameIncrementPointer(instance['00280009']),
frameTime: DICOMWeb.getNumber(instance['00181063']),
frameTimeVector: parseFloatArray(DICOMWeb.getString(instance['00181065'])),
sliceThickness: DICOMWeb.getNumber(instance['00180050']),
spacingBetweenSlices: DICOMWeb.getString(instance['00180088']),
lossyImageCompression: DICOMWeb.getString(instance['00282110']),
derivationDescription: DICOMWeb.getString(instance['00282111']),
lossyImageCompressionRatio: DICOMWeb.getString(instance['00282112']),
lossyImageCompressionMethod: DICOMWeb.getString(instance['00282114']),
echoNumber: DICOMWeb.getString(instance['00180086']),
contrastBolusAgent: DICOMWeb.getString(instance['00180010']),
radiopharmaceuticalInfo: getRadiopharmaceuticalInfo(instance),
baseWadoRsUri: baseWadoRsUri,
wadouri: WADOProxy.convertURL(wadouri, server),
wadorsuri: WADOProxy.convertURL(wadorsuri, server),
wadoRoot: server.wadoRoot,
imageRendering: server.imageRendering,
thumbnailRendering: server.thumbnailRendering,
};
// Get additional information if the instance uses "PALETTE COLOR" photometric interpretation
if (sopInstance.photometricInterpretation === 'PALETTE COLOR') {
const redPaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281101'])
);
const greenPaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281102'])
);
const bluePaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281103'])
);
const palettes = await getPaletteColors(
server,
instance,
redPaletteColorLookupTableDescriptor
);
if (palettes) {
if (palettes.uid) {
sopInstance.paletteColorLookupTableUID = palettes.uid;
}
sopInstance.redPaletteColorLookupTableData = palettes.red;
sopInstance.greenPaletteColorLookupTableData = palettes.green;
sopInstance.bluePaletteColorLookupTableData = palettes.blue;
sopInstance.redPaletteColorLookupTableDescriptor = redPaletteColorLookupTableDescriptor;
sopInstance.greenPaletteColorLookupTableDescriptor = greenPaletteColorLookupTableDescriptor;
sopInstance.bluePaletteColorLookupTableDescriptor = bluePaletteColorLookupTableDescriptor;
}
}
series.instances.push(sopInstance);
return sopInstance;
}
/**
* Create a plain JS object that describes a study (a study descriptor object)
* @param {Object} server Object with server configuration paramenters
* @param {Object} aSopInstance a SOP Instance from which study information will be added
*/
function createStudy(server, aSopInstance) {
// TODO: Pass a reference ID to the server instead of including the URLs here
return {
seriesList: [],
seriesMap: Object.create(null),
seriesLoader: null,
wadoUriRoot: server.wadoUriRoot,
wadoRoot: server.wadoRoot,
qidoRoot: server.qidoRoot,
patientName: DICOMWeb.getName(aSopInstance['00100010']),
patientId: DICOMWeb.getString(aSopInstance['00100020']),
patientAge: DICOMWeb.getNumber(aSopInstance['00101010']),
patientSize: DICOMWeb.getNumber(aSopInstance['00101020']),
patientWeight: DICOMWeb.getNumber(aSopInstance['00101030']),
accessionNumber: DICOMWeb.getString(aSopInstance['00080050']),
studyDate: DICOMWeb.getString(aSopInstance['00080020']),
modalities: DICOMWeb.getString(aSopInstance['00080061']),
studyDescription: DICOMWeb.getString(aSopInstance['00081030']),
imageCount: DICOMWeb.getString(aSopInstance['00201208']),
studyInstanceUid: DICOMWeb.getString(aSopInstance['0020000D']),
institutionName: DICOMWeb.getString(aSopInstance['00080080']),
};
}
/**
* Add a list of SOP Instances to a given study object descriptor
* @param {Object} server Object with server configuration paramenters
* @param {Object} study The study descriptor to which the given SOP instances will be added
* @param {Array} sopInstanceList A list of SOP instance objects
*/
async function addInstancesToStudy(server, study, sopInstanceList) {
return Promise.all(
sopInstanceList.map(function(sopInstance) {
return makeSOPInstance(server, study, sopInstance);
})
);
}
/**
* Parses result data from a WADO search into Study MetaData
* Returns an object populated with study metadata, including the
* series list.
*
* @param server
* @param studyInstanceUid
* @param resultData
* @returns {{seriesList: Array, patientName: *, patientId: *, accessionNumber: *, studyDate: *, modalities: *, studyDescription: *, imageCount: *, studyInstanceUid: *}}
* @param {Object} server Object with server configuration paramenters
* @param {Array} sopInstanceList List of SOP Instances that build up to the study
* @resolves {{seriesList: Array, patientName: *, patientId: *, accessionNumber: *, studyDate: *, modalities: *, studyDescription: *, imageCount: *, studyInstanceUid: *}}
*/
async function resultDataToStudyMetadata(server, studyInstanceUid, resultData) {
if (!resultData.length) {
return;
async function createStudyFromSOPInstanceList(server, sopInstanceList) {
if (Array.isArray(sopInstanceList) && sopInstanceList.length > 0) {
const firstSopInstance = sopInstanceList[0];
const study = createStudy(server, firstSopInstance);
await addInstancesToStudy(server, study, sopInstanceList);
return study;
}
const anInstance = resultData[0];
if (!anInstance) {
return;
}
// TODO: Pass a reference ID to the server instead of including the URLs here
const studyData = {
seriesList: [],
wadoUriRoot: server.wadoUriRoot,
wadoRoot: server.wadoRoot,
qidoRoot: server.qidoRoot,
patientName: DICOMWeb.getName(anInstance['00100010']),
patientId: DICOMWeb.getString(anInstance['00100020']),
patientAge: DICOMWeb.getNumber(anInstance['00101010']),
patientSize: DICOMWeb.getNumber(anInstance['00101020']),
patientWeight: DICOMWeb.getNumber(anInstance['00101030']),
accessionNumber: DICOMWeb.getString(anInstance['00080050']),
studyDate: DICOMWeb.getString(anInstance['00080020']),
modalities: DICOMWeb.getString(anInstance['00080061']),
studyDescription: DICOMWeb.getString(anInstance['00081030']),
imageCount: DICOMWeb.getString(anInstance['00201208']),
studyInstanceUid: DICOMWeb.getString(anInstance['0020000D']),
institutionName: DICOMWeb.getString(anInstance['00080080']),
};
const seriesMap = {};
await Promise.all(
resultData.map(async function(instance) {
const seriesInstanceUid = DICOMWeb.getString(instance['0020000E']);
let series = seriesMap[seriesInstanceUid];
if (!series) {
series = {
seriesDescription: DICOMWeb.getString(instance['0008103E']),
modality: DICOMWeb.getString(instance['00080060']),
seriesInstanceUid: seriesInstanceUid,
seriesNumber: DICOMWeb.getNumber(instance['00200011']),
seriesDate: DICOMWeb.getString(instance['00080021']),
seriesTime: DICOMWeb.getString(instance['00080031']),
instances: [],
};
seriesMap[seriesInstanceUid] = series;
studyData.seriesList.push(series);
}
const sopInstanceUid = DICOMWeb.getString(instance['00080018']);
const wadouri = buildInstanceWadoUrl(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const baseWadoRsUri = buildInstanceWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const wadorsuri = buildInstanceFrameWadoRsUri(
server,
studyInstanceUid,
seriesInstanceUid,
sopInstanceUid
);
const instanceSummary = {
imageType: DICOMWeb.getString(instance['00080008']),
sopClassUid: DICOMWeb.getString(instance['00080016']),
modality: DICOMWeb.getString(instance['00080060']),
sopInstanceUid,
instanceNumber: DICOMWeb.getNumber(instance['00200013']),
imagePositionPatient: DICOMWeb.getString(instance['00200032']),
imageOrientationPatient: DICOMWeb.getString(instance['00200037']),
frameOfReferenceUID: DICOMWeb.getString(instance['00200052']),
sliceLocation: DICOMWeb.getNumber(instance['00201041']),
samplesPerPixel: DICOMWeb.getNumber(instance['00280002']),
photometricInterpretation: DICOMWeb.getString(instance['00280004']),
planarConfiguration: DICOMWeb.getNumber(instance['00280006']),
rows: DICOMWeb.getNumber(instance['00280010']),
columns: DICOMWeb.getNumber(instance['00280011']),
pixelSpacing: DICOMWeb.getString(instance['00280030']),
pixelAspectRatio: DICOMWeb.getString(instance['00280034']),
bitsAllocated: DICOMWeb.getNumber(instance['00280100']),
bitsStored: DICOMWeb.getNumber(instance['00280101']),
highBit: DICOMWeb.getNumber(instance['00280102']),
pixelRepresentation: DICOMWeb.getNumber(instance['00280103']),
smallestPixelValue: DICOMWeb.getNumber(instance['00280106']),
largestPixelValue: DICOMWeb.getNumber(instance['00280107']),
windowCenter: DICOMWeb.getString(instance['00281050']),
windowWidth: DICOMWeb.getString(instance['00281051']),
rescaleIntercept: DICOMWeb.getNumber(instance['00281052']),
rescaleSlope: DICOMWeb.getNumber(instance['00281053']),
rescaleType: DICOMWeb.getNumber(instance['00281054']),
sourceImageInstanceUid: getSourceImageInstanceUid(instance),
laterality: DICOMWeb.getString(instance['00200062']),
viewPosition: DICOMWeb.getString(instance['00185101']),
acquisitionDateTime: DICOMWeb.getString(instance['0008002A']),
numberOfFrames: DICOMWeb.getNumber(instance['00280008']),
frameIncrementPointer: getFrameIncrementPointer(instance['00280009']),
frameTime: DICOMWeb.getNumber(instance['00181063']),
frameTimeVector: parseFloatArray(
DICOMWeb.getString(instance['00181065'])
),
sliceThickness: DICOMWeb.getNumber(instance['00180050']),
spacingBetweenSlices: DICOMWeb.getString(instance['00180088']),
lossyImageCompression: DICOMWeb.getString(instance['00282110']),
derivationDescription: DICOMWeb.getString(instance['00282111']),
lossyImageCompressionRatio: DICOMWeb.getString(instance['00282112']),
lossyImageCompressionMethod: DICOMWeb.getString(instance['00282114']),
echoNumber: DICOMWeb.getString(instance['00180086']),
contrastBolusAgent: DICOMWeb.getString(instance['00180010']),
radiopharmaceuticalInfo: getRadiopharmaceuticalInfo(instance),
baseWadoRsUri: baseWadoRsUri,
wadouri: WADOProxy.convertURL(wadouri, server),
wadorsuri: WADOProxy.convertURL(wadorsuri, server),
wadoRoot: server.wadoRoot,
imageRendering: server.imageRendering,
thumbnailRendering: server.thumbnailRendering,
};
// Get additional information if the instance uses "PALETTE COLOR" photometric interpretation
if (instanceSummary.photometricInterpretation === 'PALETTE COLOR') {
const redPaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281101'])
);
const greenPaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281102'])
);
const bluePaletteColorLookupTableDescriptor = parseFloatArray(
DICOMWeb.getString(instance['00281103'])
);
const palettes = await getPaletteColors(
server,
instance,
redPaletteColorLookupTableDescriptor
);
if (palettes) {
if (palettes.uid) {
instanceSummary.paletteColorLookupTableUID = palettes.uid;
}
instanceSummary.redPaletteColorLookupTableData = palettes.red;
instanceSummary.greenPaletteColorLookupTableData = palettes.green;
instanceSummary.bluePaletteColorLookupTableData = palettes.blue;
instanceSummary.redPaletteColorLookupTableDescriptor = redPaletteColorLookupTableDescriptor;
instanceSummary.greenPaletteColorLookupTableDescriptor = greenPaletteColorLookupTableDescriptor;
instanceSummary.bluePaletteColorLookupTableDescriptor = bluePaletteColorLookupTableDescriptor;
}
}
series.instances.push(instanceSummary);
})
);
return studyData;
throw new Error('Failed to create study out of provided SOP instance list');
}
/**
* Retrieve Study MetaData from a DICOM server using a WADO call
*
* @param server
* @param studyInstanceUid
* @returns {Promise}
* Retrieve Study metadata from a DICOM server. If the server is configured to use lazy load, only the first series
* will be loaded and the property "studyLoader" will be set to let consumer load remaining series as needed
* @param {Object} server Object with server configuration paramenters
* @param {string} studyInstanceUid The Study Instance UID of the study which needs to be loaded
* @returns {Object} A study descriptor object
*/
async function RetrieveMetadata(server, studyInstanceUid) {
const config = {
return (server.enableStudyLazyLoad !== false
? lazyLoadStudyMetadata
: loadStudyMetadata)(server, studyInstanceUid);
}
/**
*
* @param {*} server
* @param {*} studyInstanceUID
*/
async function loadStudyMetadata(server, studyInstanceUID) {
const dicomWeb = new api.DICOMwebClient({
url: server.wadoRoot,
headers: DICOMWeb.getAuthorizationHeader(server),
};
const dicomWeb = new api.DICOMwebClient(config);
const options = {
studyInstanceUID: studyInstanceUid,
};
});
return dicomWeb
.retrieveStudyMetadata({ studyInstanceUID })
.then(result => createStudyFromSOPInstanceList(server, result));
}
return dicomWeb.retrieveStudyMetadata(options).then(result => {
return resultDataToStudyMetadata(server, studyInstanceUid, result);
async function lazyLoadStudyMetadata(server, studyInstanceUid) {
const seriesInstanceUids = await searchStudySeries(server, studyInstanceUid);
const dicomWeb = new api.DICOMwebClient({
url: server.wadoRoot,
headers: DICOMWeb.getAuthorizationHeader(server),
});
const seriesLoader = makeSeriesLoader(
dicomWeb,
studyInstanceUid,
seriesInstanceUids
);
const firstSeries = await seriesLoader.next();
const study = await createStudyFromSOPInstanceList(
server,
firstSeries.sopInstances
);
if (seriesLoader.hasNext()) {
attachSeriesLoader(server, study, seriesLoader);
}
return study;
}
function attachSeriesLoader(server, study, seriesLoader) {
study.seriesLoader = Object.freeze({
hasNext() {
return seriesLoader.hasNext();
},
async next() {
const series = await seriesLoader.next();
await addInstancesToStudy(server, study, series.sopInstances);
return study.seriesMap[series.seriesInstanceUID];
},
});
}
/**
* Creates an immutable series loader object which loads each series sequentially using the iterator interface
* @param {DICOMWebClient} dicomWebClient The DICOMWebClient instance to be used for series load
* @param {string} studyInstanceUID The Study Instance UID from which series will be loaded
* @param {Array} seriesInstanceUIDList A list of Series Instance UIDs
* @returns {Object} Returns an object which supports loading of instances from each of given Series Instance UID
*/
function makeSeriesLoader(
dicomWebClient,
studyInstanceUID,
seriesInstanceUIDList
) {
return Object.freeze({
hasNext() {
return seriesInstanceUIDList.length > 0;
},
async next() {
const seriesInstanceUID = seriesInstanceUIDList.shift();
const sopInstances = await dicomWebClient.retrieveSeriesMetadata({
studyInstanceUID,
seriesInstanceUID,
});
return { studyInstanceUID, seriesInstanceUID, sopInstances };
},
});
}
/**
* Search series of a given study
* @param {Object} server Object with server configuration paramenters
* @param {string} studyInstanceUID The Study Instance UID to search series from;
* @returns {Arrays} A list of Series Instance UIDs
*/
async function searchStudySeries(server, studyInstanceUID) {
const dicomWeb = new api.DICOMwebClient({
url: server.qidoRoot,
headers: DICOMWeb.getAuthorizationHeader(server),
});
const seriesList = await dicomWeb.searchForSeries({ studyInstanceUID });
return seriesList
.sort(seriesSortingCriteria)
.map(series => getSeriesInfo(series).seriesInstanceUid);
}
/**
* Series sorting criteria: series considered low priority are moved to the end
* of the list and series number is used to break ties
* @param {Object} firstSeries
* @param {Object} secondSeries
*/
function seriesSortingCriteria(firstSeries, secondSeries) {
const a = getSeriesInfo(firstSeries);
const b = getSeriesInfo(secondSeries);
if (!a.isLowPriority && b.isLowPriority) {
return -1;
}
if (a.isLowPriority && !b.isLowPriority) {
return 1;
}
return a.seriesNumber - b.seriesNumber;
}
/**
* Creates an object with processed series information and saves its reference
* inside the series object itself to simplify sorting
* @param {Object} series The raw series object
*/
function getSeriesInfo(series) {
let info = series[INFO];
if (!info) {
const modality = DICOMWeb.getString(series['00080060'], '').toUpperCase();
info = Object.freeze({
modality,
isLowPriority: isLowPriorityModality(modality),
seriesInstanceUid: DICOMWeb.getString(series['0020000E']),
seriesNumber: DICOMWeb.getNumber(series['00200011'], 0) || 0,
});
series[INFO] = info;
}
return info;
}
export default RetrieveMetadata;
+22
View File
@@ -0,0 +1,22 @@
/* Enabled JPEG images downloading on IE11. */
const b64toBlob = (b64Data, contentType = '', sliceSize = 512) => {
const byteCharacters = atob(b64Data);
const byteArrays = [];
for (let offset = 0; offset < byteCharacters.length; offset += sliceSize) {
const slice = byteCharacters.slice(offset, offset + sliceSize);
const byteNumbers = new Array(slice.length);
for (let i = 0; i < slice.length; i++) {
byteNumbers[i] = slice.charCodeAt(i);
}
const byteArray = new Uint8Array(byteNumbers);
byteArrays.push(byteArray);
}
const blob = new Blob(byteArrays, { type: contentType });
return blob;
};
export default b64toBlob;
+6
View File
@@ -9,6 +9,8 @@ import studyMetadataManager from './studyMetadataManager';
import updateMetaDataManager from './updateMetaDataManager.js';
import writeScript from './writeScript.js';
import DicomLoaderService from './dicomLoaderService.js';
import b64toBlob from './b64toBlob.js';
import * as urlUtil from './urlUtil';
const utils = {
guid,
@@ -17,12 +19,14 @@ const utils = {
addServers,
sortBy,
writeScript,
b64toBlob,
StackManager,
studyMetadataManager,
// Updates WADO-RS metaDataManager
updateMetaDataManager,
DICOMTagDescriptions,
DicomLoaderService,
urlUtil,
};
export {
@@ -32,12 +36,14 @@ export {
addServers,
sortBy,
writeScript,
b64toBlob,
StackManager,
studyMetadataManager,
// Updates WADO-RS metaDataManager
updateMetaDataManager,
DICOMTagDescriptions,
DicomLoaderService,
urlUtil,
};
export default utils;
+2
View File
@@ -9,12 +9,14 @@ describe('Top level exports', () => {
'addServers',
'sortBy',
'writeScript',
'b64toBlob',
'StackManager',
'studyMetadataManager',
// Updates WADO-RS metaDataManager
'updateMetaDataManager',
'DICOMTagDescriptions',
'DicomLoaderService',
'urlUtil',
].sort();
const exports = Object.keys(utils.default).sort();
@@ -0,0 +1,157 @@
/**
* Checks if a series is reconstructable to a 3D volume.
*
* @param {Object} series The `OHIFSeriesMetadata` object.
* @param {Object[]} instances The `OHIFInstanceMetadata` object
*/
export default function isDisplaySetReconstructable(series, instances) {
// Can't reconstruct if we only have one image.
const modality = series._data.modality; // TODO -> Is there a better way to get this?
const isMultiframe = instances[0].getRawValue('x00280008') > 1;
if (!constructableModalities.includes(modality)) {
return { value: false };
}
if (!isMultiframe && instances.length === 1) {
return { values: false };
}
if (isMultiframe) {
return processMultiframe(instances[0]);
} else {
return processSingleframe(instances);
}
}
function processMultiframe(instance) {
//TODO: deal with multriframe checks! return true for now.
return { value: true };
}
function processSingleframe(instances) {
const firstImage = instances[0];
const firstImageRows = firstImage.getTagValue('x00280010');
const firstImageColumns = firstImage.getTagValue('x00280011');
const firstImageSamplesPerPixel = firstImage.getTagValue('x00280002');
// Note: No need to unpack iop, can compare string form.
const firstImageOrientationPatient = firstImage.getTagValue('x00200037');
// Can't reconstruct if we:
// -- Have a different dimensions within a displaySet.
// -- Have a different number of components within a displaySet.
// -- Have different orientations within a displaySet.
for (let i = 1; i < instances.length; i++) {
const instance = instances[i];
const rows = instance.getTagValue('x00280010');
const columns = instance.getTagValue('x00280011');
const samplesPerPixel = instance.getTagValue('x00280002');
const imageOrientationPatient = instance.getTagValue('x00200037');
if (
rows !== firstImageRows ||
columns !== firstImageColumns ||
samplesPerPixel !== firstImageSamplesPerPixel ||
imageOrientationPatient !== firstImageOrientationPatient
) {
return { value: false };
}
}
let missingFrames = 0;
// Check if frame spacing is approximately equal within a tolerance.
// If spacing is on a uniform grid but we are missing frames,
// Allow reconstruction, but pass back the number of missing frames.
if (instances.length > 2) {
const firstIpp = _getImagePositionPatient(firstImage);
const lastIpp = _getImagePositionPatient(instances[instances.length - 1]);
const averageSpacingBetweenFrames =
_getPerpendicularDistance(firstIpp, lastIpp) / (instances.length - 1);
let previousIpp = firstIpp;
for (let i = 1; i < instances.length; i++) {
const instance = instances[i];
const ipp = _getImagePositionPatient(instance);
const spacingBetweenFrames = _getPerpendicularDistance(ipp, previousIpp);
const spacingIssue = _getSpacingIssue(
spacingBetweenFrames,
averageSpacingBetweenFrames
);
if (spacingIssue) {
const issue = spacingIssue.issue;
if (issue === reconstructionIssues.MISSING_FRAMES) {
missingFrames += spacingIssue.missingFrames;
} else if (issue === reconstructionIssues.IRREGULAR_SPACING) {
return { value: false };
}
}
previousIpp = ipp;
}
}
return { value: true, missingFrames };
}
// TODO: Is 10% a reasonable tolerance for spacing?
const tolerance = 0.1;
/**
* Checks for spacing issues.
*
* @param {number} spacing The spacing between two frames.
* @param {number} averageSpacing The average spacing between all frames.
*
* @returns {Object} An object containing the issue and extra information if necessary.
*/
function _getSpacingIssue(spacing, averageSpacing) {
const equalWithinTolerance =
Math.abs(spacing - averageSpacing) < averageSpacing * tolerance;
if (equalWithinTolerance) {
return;
}
const multipleOfAverageSpacing = spacing / averageSpacing;
const numberOfSpacings = Math.round(multipleOfAverageSpacing);
const errorForEachSpacing =
Math.abs(spacing - numberOfSpacings * averageSpacing) / numberOfSpacings;
if (errorForEachSpacing < tolerance * averageSpacing) {
return {
issue: reconstructionIssues.MISSING_FRAMES,
missingFrames: numberOfSpacings - 1,
};
}
return { issue: reconstructionIssues.IRREGULAR_SPACING };
}
function _getImagePositionPatient(instance) {
return instance
.getTagValue('x00200032')
.split('\\')
.map(element => Number(element));
}
function _getPerpendicularDistance(a, b) {
return Math.sqrt(
Math.pow(a[0] - b[0], 2) +
Math.pow(a[1] - b[1], 2) +
Math.pow(a[2] - b[2], 2)
);
}
const constructableModalities = ['MR', 'CT', 'PT', 'NM'];
const reconstructionIssues = {
MISSING_FRAMES: 'missingframes',
IRREGULAR_SPACING: 'irregularspacing',
};
@@ -0,0 +1,5 @@
const LOW_PRIORITY_MODALITIES = Object.freeze(['SEG', 'KO', 'PR']);
export default function isLowPriorityModality(modality) {
return LOW_PRIORITY_MODALITIES.includes(modality);
}
@@ -70,32 +70,48 @@ const getWadoRsInstanceMetaData = (study, series, instance) => {
.toJSON();
};
export default function updateMetaDataManager(study) {
study.seriesList.forEach(series => {
series.instances.forEach(instance => {
// Cache just images that are going to be loaded via WADO-RS
if (
instance.imageRendering !== 'wadors' &&
instance.thumbnailRendering !== 'wadors'
) {
return;
}
/**
* Update metadata manager with instances of a specifc series
* @param {Object} study A plain study descriptor object
* @param {Object} series A Series descriptor object contaning the instances to be added to the manager
*/
function updateMetaDataManagerForSeries(study, series) {
series.instances.forEach(instance => {
// Cache just images that are going to be loaded via WADO-RS
if (
instance.imageRendering !== 'wadors' &&
instance.thumbnailRendering !== 'wadors'
) {
return;
}
const metaData = getWadoRsInstanceMetaData(study, series, instance);
const numberOfFrames = instance.numberOfFrames || 1;
const metaData = getWadoRsInstanceMetaData(study, series, instance);
const numberOfFrames = instance.numberOfFrames || 1;
// We can share the same metaData with all frames because it doesn't have
// any frame specific data, such as frameNumber, pixelData, offset, etc.
// WADO-RS frame number is 1-based
for (let frameNumber = 0; frameNumber < numberOfFrames; frameNumber++) {
const imageId = getWADORSImageId(instance, frameNumber);
// We can share the same metaData with all frames because it doesn't have
// any frame specific data, such as frameNumber, pixelData, offset, etc.
// WADO-RS frame number is 1-based
for (let frameNumber = 0; frameNumber < numberOfFrames; frameNumber++) {
const imageId = getWADORSImageId(instance, frameNumber);
// TODO Drop dependency on this
cornerstoneWADOImageLoader.wadors.metaDataManager.add(
imageId,
metaData
);
}
});
// TODO Drop dependency on this
cornerstoneWADOImageLoader.wadors.metaDataManager.add(imageId, metaData);
}
});
}
/**
* Update metadata manager
* @param {Object} study A plain study descriptor object
* @param {string} [seriesInstanceUid] The Series Instance UID of the series to be added (Optional)
*/
export default function updateMetaDataManager(study, seriesInstanceUid) {
if (seriesInstanceUid) {
const series = study.seriesMap[seriesInstanceUid];
updateMetaDataManagerForSeries(study, series);
} else {
study.seriesList.forEach(series => {
updateMetaDataManagerForSeries(study, series);
});
}
}
+73
View File
@@ -0,0 +1,73 @@
import lib from 'query-string';
const PARAM_SEPARATOR = ';';
const PARAM_PATTERN_IDENTIFIER = ':';
function toLowerCaseFirstLetter(word) {
return word[0].toLowerCase() + word.slice(1);
}
const getQueryFilters = (location = {}) => {
const { search } = location;
if (!search) {
return;
}
const searchParameters = parse(search);
const filters = {};
Object.entries(searchParameters).forEach(([key, value]) => {
filters[toLowerCaseFirstLetter(key)] = value;
});
return filters;
};
const decode = (strToDecode = '') => {
try {
const decoded = window.atob(strToDecode);
return decoded;
} catch (e) {
return strToDecode;
}
};
const parse = toParse => {
if (toParse) {
return lib.parse(toParse);
}
return {};
};
const parseParam = paramStr => {
const _paramDecoded = decode(paramStr);
if (_paramDecoded && typeof _paramDecoded === 'string') {
return _paramDecoded.split(PARAM_SEPARATOR);
}
};
const replaceParam = (path = '', paramKey, paramValue) => {
const paramPattern = `${PARAM_PATTERN_IDENTIFIER}${paramKey}`;
if (paramValue) {
return path.replace(paramPattern, paramValue);
}
return path;
};
const isValidPath = path => {
const paramPatternPiece = `/${PARAM_PATTERN_IDENTIFIER}`;
return path.indexOf(paramPatternPiece) < 0;
};
const queryString = {
getQueryFilters,
};
const paramString = {
isValidPath,
parseParam,
replaceParam,
};
export { parse, queryString, paramString };
+22
View File
@@ -3,6 +3,28 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [0.51.0](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.50.5...@ohif/i18n@0.51.0) (2019-10-15)
### Features
* Add browser info and app version ([#1046](https://github.com/OHIF/Viewers/issues/1046)) ([c217b8b](https://github.com/OHIF/Viewers/commit/c217b8b))
## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.50.4...@ohif/i18n@0.50.5) (2019-10-04)
### Bug Fixes
* CineDialog buttons label ([#998](https://github.com/OHIF/Viewers/issues/998)) ([4df624b](https://github.com/OHIF/Viewers/commit/4df624b))
## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.50.3...@ohif/i18n@0.50.4) (2019-09-10)
**Note:** Version bump only for package @ohif/i18n
+1 -1
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/i18n",
"version": "0.50.4",
"version": "0.51.0",
"description": "Internationalization library for The OHIF Viewer",
"author": "OHIF",
"license": "MIT",
@@ -0,0 +1,14 @@
{
"Browser": "Browser",
"Build Number": "Build Number",
"Latest Master Commits": "Latest Master Commits",
"More details": "More details",
"Name": "Name",
"OHIF Viewer - About": "OHIF Viewer - About",
"OS": "OS",
"Report an issue": "Report an issue",
"Repository URL": "Repository URL",
"Value": "Value",
"Version Information": "Version Information",
"Visit the forum": "Visit the forum"
}
@@ -1,8 +1,8 @@
{
"Next image": "$t(Common:Play) $t(Common:Image)",
"Next image": "$t(Common:Next) $t(Common:Image)",
"Play / Stop": "$t(Common:Play) / $t(Common:Stop)",
"Previous image": "$t(Common:Previous) $t(Common:Image)",
"Skip to first image": "Skip to first $t(Common:Image)",
"Skip to last image": "Skip, to last $t(Common:Image)",
"Skip to last image": "Skip to last $t(Common:Image)",
"fps": "fps"
}
+2
View File
@@ -1,3 +1,4 @@
import AboutModal from "./AboutModal.json";
import Buttons from "./Buttons.json";
import CineDialog from "./CineDialog.json";
import Common from "./Common.json";
@@ -8,6 +9,7 @@ import UserPreferencesModal from "./UserPreferencesModal.json";
export default {
'en-US': {
AboutModal,
Buttons,
CineDialog,
Common,
+1 -1
View File
@@ -1,5 +1,5 @@
{
"Next image": " $t(Common:Image) $t(Common:Next)",
"Next image": "$t(Common:Image) $t(Common:Next)",
"Play / Stop": "$t(Common:Play) / Stop",
"Previous image": "$t(Common:Image) $t(Common:Previous)",
"Skip to first image": "Ir a la primera $t(Common:Image)",
@@ -1,5 +1,5 @@
{
"Next image": "$t(Common:Play) $t(Common:Image)",
"Next image": "$t(Common:Next) $t(Common:Image)",
"Play / Stop": "$t(Common:Play) / $t(Common:Stop)",
"Previous image": "$t(Common:Previous) $t(Common:Image)",
"Skip to first image": "$t(Common:Image)最初にスキップ",
@@ -0,0 +1,14 @@
{
"Browser": "Navegador",
"Build Number": "Número da compilação",
"Latest Master Commits": "Últimos Commits na Master",
"More details": "Mais detalhes",
"Name": "Nome",
"OHIF Viewer - About": "OHIF Viewer - Sobre",
"OS": "SO",
"Report an issue": "Informar um problema",
"Repository URL": "URL do Repositório",
"Value": "Valor",
"Version Information": "Informação da Versão",
"Visit the forum": "Visite o fórum"
}
+2
View File
@@ -1,3 +1,4 @@
import AboutModal from "./AboutModal.json";
import Buttons from "./Buttons.json";
import CineDialog from "./CineDialog.json";
import Common from "./Common.json";
@@ -6,6 +7,7 @@ import UserPreferencesModal from "./UserPreferencesModal.json";
export default {
'pt-BR': {
AboutModal,
Buttons,
CineDialog,
Common,
+1 -1
View File
@@ -1,5 +1,5 @@
{
"Next image": "$t(Common:Play) $t(Common:Image)",
"Next image": "$t(Common:Next) $t(Common:Image)",
"Play / Stop": "$t(Common:Play) / $t(Common:Stop)",
"Previous image": "$t(Common:Previous) $t(Common:Image)",
"Skip to first image": "Bỏ qua đến đầu $t(Common:Image)",
+101
View File
@@ -3,6 +3,107 @@
All notable changes to this project will be documented in this file.
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
# [0.57.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.56.1...@ohif/ui@0.57.0) (2019-10-26)
### Features
* Snapshot Download Tool ([#840](https://github.com/OHIF/Viewers/issues/840)) ([450e098](https://github.com/OHIF/Viewers/commit/450e0981a5ba054fcfcb85eeaeb18371af9088f8))
## [0.56.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.56.0...@ohif/ui@0.56.1) (2019-10-26)
**Note:** Version bump only for package @ohif/ui
# [0.56.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.55.0...@ohif/ui@0.56.0) (2019-10-22)
### Features
* 🎸 Load spinner when selecting gcloud store. Add key on td ([#1034](https://github.com/OHIF/Viewers/issues/1034)) ([e62f403](https://github.com/OHIF/Viewers/commit/e62f403fe9e3df56713128e3d59045824b086d8d)), closes [#1057](https://github.com/OHIF/Viewers/issues/1057)
# [0.55.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.54.0...@ohif/ui@0.55.0) (2019-10-15)
### Features
* Add browser info and app version ([#1046](https://github.com/OHIF/Viewers/issues/1046)) ([c217b8b](https://github.com/OHIF/Viewers/commit/c217b8b))
# [0.54.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.53.4...@ohif/ui@0.54.0) (2019-10-14)
### Features
* Notification Service ([#1011](https://github.com/OHIF/Viewers/issues/1011)) ([92c8996](https://github.com/OHIF/Viewers/commit/92c8996))
## [0.53.4](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.53.3...@ohif/ui@0.53.4) (2019-10-11)
**Note:** Version bump only for package @ohif/ui
## [0.53.3](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.53.2...@ohif/ui@0.53.3) (2019-10-10)
### Bug Fixes
* 🎸 switch ohif logo from text + font to SVG ([#1021](https://github.com/OHIF/Viewers/issues/1021)) ([e7de8be](https://github.com/OHIF/Viewers/commit/e7de8be))
## [0.53.2](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.53.1...@ohif/ui@0.53.2) (2019-10-09)
**Note:** Version bump only for package @ohif/ui
## [0.53.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.53.0...@ohif/ui@0.53.1) (2019-10-04)
### Bug Fixes
* Move Series Information to Separate Row ([#990](https://github.com/OHIF/Viewers/issues/990)) ([458d310](https://github.com/OHIF/Viewers/commit/458d310))
# [0.53.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.52.0...@ohif/ui@0.53.0) (2019-10-03)
### Features
* Use QIDO + WADO to load series metadata individually rather than the entire study metadata at once ([#953](https://github.com/OHIF/Viewers/issues/953)) ([9e10c2b](https://github.com/OHIF/Viewers/commit/9e10c2b))
# [0.52.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.51.3...@ohif/ui@0.52.0) (2019-10-01)
+2 -1
View File
@@ -1,6 +1,6 @@
{
"name": "@ohif/ui",
"version": "0.52.0",
"version": "0.57.0",
"description": "A set of React components for Medical Imaging Viewers",
"author": "OHIF Contributors",
"license": "MIT",
@@ -39,6 +39,7 @@
"dependencies": {
"@babel/runtime": "^7.5.5",
"@ohif/i18n": "^0.2.3",
"browser-detect": "^0.2.28",
"classnames": "2.2.6",
"i18next": "^17.0.3",
"i18next-browser-languagedetector": "^3.0.1",
@@ -1,162 +0,0 @@
import './LayoutManager.css';
import React, { Component } from 'react';
import LayoutPanelDropTarget from './LayoutPanelDropTarget.js';
import PropTypes from 'prop-types';
function defaultViewportPlugin(props) {
return <div>{JSON.stringify(props)}</div>;
}
function EmptyViewport() {
return (
<div className="EmptyViewport">
<p>Please drag a stack here to view images.</p>
</div>
);
}
export class LayoutManager extends Component {
static className = 'LayoutManager';
static defaultProps = {
viewportData: [],
layout: {
viewports: [
{
top: 0,
left: 0,
height: '100%',
width: '100%',
},
],
},
activeViewportIndex: 0,
supportsDragAndDrop: true,
availablePlugins: {
defaultViewportPlugin,
},
defaultPlugin: 'defaultViewportPlugin',
};
static propTypes = {
viewportData: PropTypes.array.isRequired,
supportsDragAndDrop: PropTypes.bool.isRequired,
activeViewportIndex: PropTypes.number.isRequired,
layout: PropTypes.object.isRequired,
availablePlugins: PropTypes.object.isRequired,
setViewportData: PropTypes.func,
studies: PropTypes.array,
children: PropTypes.node,
};
onDrop = ({ viewportIndex, item }) => {
if (this.props.setViewportData) {
this.props.setViewportData({ viewportIndex, item });
}
};
getPluginComponent = plugin => {
const pluginComponent = this.props.availablePlugins[
plugin || this.props.defaultPlugin
];
if (!pluginComponent) {
throw new Error(
`No Viewport Plugin available for plugin ${plugin}. Available plugins: ${JSON.stringify(
this.props.availablePlugins
)}`
);
}
return pluginComponent;
};
getChildComponent(plugin, data, viewportIndex, children) {
if (data.displaySet) {
const PluginComponent = this.getPluginComponent(plugin);
return (
<PluginComponent
viewportData={data}
viewportIndex={viewportIndex}
children={[children]}
/>
);
}
return <EmptyViewport />;
}
getContent(childComponent, supportsDragAndDrop, viewportIndex) {
if (supportsDragAndDrop) {
return (
<LayoutPanelDropTarget
onDrop={this.onDrop}
viewportIndex={viewportIndex}
>
{childComponent}
</LayoutPanelDropTarget>
);
}
return <div className="LayoutPanel">{childComponent}</div>;
}
render() {
if (!this.props.viewportData.length) {
return '';
}
const { supportsDragAndDrop, studies, viewportData } = this.props;
const viewports = this.props.layout.viewports;
const viewportElements = viewports.map((layout, viewportIndex) => {
const displaySet = viewportData[viewportIndex];
const data = {
displaySet,
studies,
};
// Use whichever plugin is currently in use in the panel
// unless nothing is specified. If nothing is specified
// and the display set has a plugin specified, use that.
//
// TODO: Change this logic to:
// - Plugins define how capable they are of displaying a SopClass
// - When updating a panel, ensure that the currently enabled plugin
// in the viewport is capable of rendering this display set. If not
// then use the most capable available plugin
let plugin = layout.plugin;
if (!layout.plugin && displaySet && displaySet.plugin) {
plugin = displaySet.plugin;
}
const childComponent = this.getChildComponent(
plugin,
data,
viewportIndex,
this.props.children
);
const content = this.getContent(
childComponent,
supportsDragAndDrop,
viewportIndex
);
let className = 'viewport-container';
if (this.props.activeViewportIndex === viewportIndex) {
className += ' active';
}
return (
<div key={viewportIndex} className={className} style={{ ...layout }}>
{content}
</div>
);
});
return <div className={LayoutManager.className}>{viewportElements}</div>;
}
}
export default LayoutManager;
@@ -1,12 +0,0 @@
.LayoutPanelDropTarget {
width: 100%;
height: 100%;
opacity: 1;
transition: 0.3s all ease;
}
.LayoutPanelDropTarget.hovered {
opacity: 0.5;
cursor: copy;
}
@@ -1,74 +0,0 @@
import PropTypes from 'prop-types';
import React, { Component } from 'react';
import { DropTarget } from 'react-dnd';
import './LayoutPanelDropTarget.css';
// Drag sources and drop targets only interact
// if they have the same string type.
const Types = {
THUMBNAIL: 'thumbnail',
};
const divTarget = {
drop(props, monitor, component) {
const item = monitor.getItem();
if (props.onDrop) {
props.onDrop({
viewportIndex: props.viewportIndex,
item,
});
}
return {
id: `LayoutPanelDropTarget-${props.viewportIndex}`,
viewportIndex: props.viewportIndex,
item,
};
},
};
// TODO: Find out why we can't move this into the Example app instead.
// It looks like the context isn't properly shared.
class LayoutPanelDropTarget extends Component {
static className = 'LayoutPanelDropTarget';
static defaultProps = {
isOver: false,
canDrop: false,
};
static propTypes = {
connectDropTarget: PropTypes.func.isRequired,
canDrop: PropTypes.bool.isRequired,
isOver: PropTypes.bool.isRequired,
viewportComponent: PropTypes.object,
};
render() {
const { canDrop, isOver, connectDropTarget } = this.props;
const isActive = canDrop && isOver;
let className = LayoutPanelDropTarget.className;
if (isActive) {
className += ' hovered';
} else if (canDrop) {
className += ' can-drop';
}
return connectDropTarget(
<div className={className}>{this.props.children}</div>
);
}
}
const collect = (connect, monitor) => ({
connectDropTarget: connect.dropTarget(),
canDrop: monitor.canDrop(),
isOver: monitor.isOver(),
});
export default DropTarget(Types.THUMBNAIL, divTarget, collect)(
LayoutPanelDropTarget
);
+2 -2
View File
@@ -33,8 +33,8 @@ as easy as possible. You will, however, need to include either the default font
or the font you set for your theme:
```js
// Google Fonts, Sanchez & Roboto
'https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700|Sanchez&display=swap';
// Google Fonts, Roboto
'https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700&display=swap';
```
`@ohif/ui` also looks for theme CSS variabled defined on `:root`. You can find a
+21 -18
View File
@@ -1,18 +1,19 @@
<!DOCTYPE html>
<html lang="{{ lang }}">
<head>
<meta charset="UTF-8">
<meta name="description" content="{{ description }}">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta http-equiv="X-UA-Compatible" content="ie=edge">
<title>{{ title }}</title>
<head>
<meta charset="UTF-8">
<meta name="description" content="{{ description }}">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta http-equiv="X-UA-Compatible" content="ie=edge">
<!-- Latest compiled and minified CSS -->
<link rel="stylesheet" href="/public/docz.css">
<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700|Sanchez&display=swap">
<title>{{ title }}</title>
<style>
<!-- Latest compiled and minified CSS -->
<link rel="stylesheet" href="/public/docz.css">
<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700&display=swap">
<style>
/* "Tide" theme */
/* TODO:
- Convert the other themes to CSS Variables
@@ -40,7 +41,7 @@
--table-text-primary-color: #ffffff;
--table-text-secondary-color: #91b9cd;
--large-numbers-color:#6FBDE2;
--large-numbers-color: #6FBDE2;
--state-error: #FFCCCC;
--state-error-border: #FFCCCC;
@@ -70,11 +71,13 @@
body {
font-family: 'Roboto', sans-serif !important;
}
</style>
{{ head }}
</head>
<body>
<div id="root" />
{{ footer }}
</body>
</style>
{{ head }}
</head>
<body>
<div id="root" />
{{ footer }}
</body>
</html>
@@ -0,0 +1,335 @@
import React, { useEffect, useState, createRef } from 'react';
import Modal from 'react-bootstrap-modal';
import PropTypes from 'prop-types';
import './DownloadDialog.styl';
import { TextInput, Select } from '@ohif/ui';
import { withTranslation } from '../../utils/LanguageProvider';
const FILE_TYPE_OPTIONS = [
{
key: 'jpg',
value: 'jpg',
},
{
key: 'png',
value: 'png',
},
];
const DEFAULT_FILENAME = 'image';
const DownloadDialog = ({
t,
isOpen,
activeViewport,
onClose,
updateViewportPreview,
enableViewport,
disableViewport,
toggleAnnotations,
loadImage,
downloadBlob,
defaultSize,
minimumSize,
canvasClass,
}) => {
const [filename, setFilename] = useState(DEFAULT_FILENAME);
const [fileType, setFileType] = useState('jpg');
const [height, setHeight] = useState(defaultSize);
const [width, setWidth] = useState(defaultSize);
const [showAnnotations, setShowAnnotations] = useState(true);
const [keepAspect, setKeepAspect] = useState(true);
const [lastImage, setLastImage] = useState();
const [viewportElement, setViewportElement] = useState();
const [viewportElementHeight, setViewportElementHeight] = useState(
minimumSize
);
const [viewportElementWidth, setViewportElementWidth] = useState(minimumSize);
const [downloadCanvas, setDownloadCanvas] = useState({
ref: createRef(),
width: minimumSize,
height: minimumSize,
});
const [viewportPreview, setViewportPreview] = useState({
src: null,
width: minimumSize,
height: minimumSize,
});
useEffect(() => {
enableViewport(viewportElement);
return () => {
disableViewport(viewportElement);
setHeight(defaultSize);
setWidth(defaultSize);
};
}, [defaultSize, disableViewport, enableViewport, viewportElement]);
useEffect(() => {
const loadAndUpdateViewports = async () => {
const {
image,
width: scaledWidth,
height: scaledHeight,
} = await loadImage(activeViewport, viewportElement, width, height);
setLastImage(image);
toggleAnnotations(showAnnotations, viewportElement);
setViewportElementHeight(scaledHeight);
setViewportElementWidth(scaledWidth);
setDownloadCanvas(state => ({
...state,
height: scaledHeight,
width: scaledWidth,
}));
const {
dataUrl,
width: viewportElementWidth,
height: viewportElementHeight,
} = await updateViewportPreview(
viewportElement,
downloadCanvas.ref.current,
fileType
);
setViewportPreview(state => ({
...state,
src: dataUrl,
width: viewportElementWidth,
height: viewportElementHeight,
}));
};
loadAndUpdateViewports();
}, [
activeViewport,
viewportElement,
showAnnotations,
height,
width,
loadImage,
toggleAnnotations,
updateViewportPreview,
fileType,
downloadCanvas.ref,
]);
const onHeightChange = () => {
const newHeight = event.target.value;
setHeight(newHeight);
setViewportElementHeight(newHeight);
setDownloadCanvas(state => ({
...state,
height: newHeight,
}));
if (keepAspect) {
const multiplier = newHeight / lastImage.height;
const newWidth = Math.round(lastImage.width * multiplier);
setWidth(newWidth);
setViewportElementWidth(newWidth);
setDownloadCanvas(state => ({
...state,
width: newWidth,
}));
}
};
const onWidthChange = event => {
const newWidth = event.target.value;
setWidth(newWidth);
setViewportElementWidth(newWidth);
setDownloadCanvas(state => ({
...state,
width: newWidth,
}));
if (keepAspect) {
const multiplier = newWidth / lastImage.width;
const newHeight = Math.round(lastImage.height * multiplier);
setHeight(newHeight);
setViewportElementHeight(newHeight);
setDownloadCanvas(state => ({
...state,
height: newHeight,
}));
}
};
const downloadImage = () => {
downloadBlob(
filename || DEFAULT_FILENAME,
fileType,
viewportElement,
downloadCanvas.ref.current
);
};
return (
<Modal
show={isOpen}
onHide={onClose}
aria-labelledby="ModalHeader"
className="DownloadDialog modal fade themed in"
backdrop={false}
large={true}
keyboard={true}
>
<Modal.Header closeButton>
<Modal.Title>{t('Download High Quality Image')}</Modal.Title>
</Modal.Header>
<Modal.Body>
<div className="title">
{t(
'Please specify the dimensions, filename, and desired type for the output image.'
)}
</div>
<div className="file-info-container">
<div className="col">
<div className="width">
<TextInput
type="number"
min={minimumSize}
value={width}
label={t('Image width (px)')}
onChange={onWidthChange}
/>
</div>
<div className="height">
<TextInput
type="number"
min={minimumSize}
value={height}
label={t('Image height (px)')}
onChange={onHeightChange}
/>
</div>
</div>
<div className="col">
<div className="file-name">
<TextInput
type="text"
value={filename}
onChange={event => setFilename(event.target.value)}
label={t('File name')}
id="file-name"
/>
</div>
<div className="file-type">
<Select
value={fileType}
onChange={event => setFileType(event.target.value)}
options={FILE_TYPE_OPTIONS}
label={t('File type')}
/>
</div>
</div>
<div className="col">
<div className="show-annotations">
<label htmlFor="show-annotations" className="form-check-label">
<input
id="show-annotations"
type="checkbox"
className="form-check-input"
checked={showAnnotations}
onChange={event => setShowAnnotations(event.target.checked)}
/>
{t('Show Annotations')}
</label>
</div>
</div>
</div>
<div
style={{
height: viewportElementHeight,
width: viewportElementWidth,
position: 'absolute',
left: '9999px',
}}
ref={ref => setViewportElement(ref)}
>
<canvas
className={canvasClass}
style={{
height: downloadCanvas.height,
width: downloadCanvas.width,
display: 'block',
}}
width={downloadCanvas.width}
height={downloadCanvas.height}
ref={downloadCanvas.ref}
></canvas>
</div>
<div className="preview">
<h4> {t('Image Preview')}</h4>
<img
className="viewport-preview"
src={viewportPreview.src}
alt="Viewport Preview"
style={{
height: viewportPreview.height,
width: viewportPreview.width,
}}
/>
</div>
<div className="actions">
<div className="action-cancel">
<button type="button" className="btn btn-danger" onClick={onClose}>
{t('Cancel')}
</button>
</div>
<div className="action-save">
<button onClick={downloadImage} className="btn btn-primary">
{t('Download')}
</button>
</div>
</div>
</Modal.Body>
</Modal>
);
};
DownloadDialog.propTypes = {
t: PropTypes.func.isRequired,
isOpen: PropTypes.bool.isRequired,
activeViewport: PropTypes.object,
onClose: PropTypes.func.isRequired,
updateViewportPreview: PropTypes.func.isRequired,
enableViewport: PropTypes.func.isRequired,
disableViewport: PropTypes.func.isRequired,
toggleAnnotations: PropTypes.func.isRequired,
loadImage: PropTypes.func.isRequired,
downloadBlob: PropTypes.func.isRequired,
defaultSize: PropTypes.number.isRequired,
minimumSize: PropTypes.number.isRequired,
canvasClass: PropTypes.string.isRequired,
};
export default withTranslation('DownloadDialog')(DownloadDialog);
@@ -0,0 +1,107 @@
@import './../../design/styles/common/global.styl'
@import './../../design/styles/common/form.styl'
@import './../../design/styles/common/button.styl'
.DownloadDialog
color: var(--text-secondary-color);
filter: drop-shadow(0 0 3px var(--ui-gray-darkest));
border: none;
border-radius: 8px;
width: inherit;
padding: 15px;
background: transparent;
z-index: 1080 !important;
.title
margin: 0;
font-weight: bold;
.file-info-container
display: flex;
flex-direction: row;
margin: 20px 0;
border-radius: 5px;
padding: 20px 10px 0;
background-color: #16202b;
.form-control.input-ohif
padding: 6px 12px;
@media screen and (max-width: 1023px)
flex-direction: column;
.col
flex-grow: 1;
.input-ohif
margin-left: 15px;
@media screen and (max-width: 1023px)
margin-left: 0;
margin-top: 5px;
width: 100%;
.file-type
.select-ohif
margin-left: 17px;
@media screen and (max-width: 1023px)
margin-left: 0;
width: 100%;
.show-annotations
font-weight: bold;
line-height: 30px;
input
margin-right: 7px;
vertical-align: middle;
label
display: flex;
justify-content: center;
align-items: center;
.preview
display: flex;
flex-direction column;
height: fit-content;
background-color: #16202b;
width: fit-content;
padding: 10px;
border-radius: 5px;
align-self: center;
@media screen and (max-width: 1023px)
width: 100%;
justify-content: center;
align-items: center;
.viewport-preview
max-height: 512px;
max-width: 512px;
h4
width: 100%;
text-align center;
font-size: 1.3em;
margin: 0 0 10px;
.preview-container
width: auto;
height: 100%;
max-height: 400px;
object-fit contain;
.actions
display: flex;
height: 60px;
flex-wrap: nowrap;
justify-content: flex-end;
align-items: center;
.action-cancel
margin: 0 20px;
.actions-save
margin: 0 0 0 10px;
.modal-dialog
height: 100%;
.modal-body
display: flex;
flex-direction: column;
@@ -0,0 +1,39 @@
---
name: Download Dialog
menu: Components
route: /components/download-dialog
---
import { Playground, Props } from 'docz'
import { State } from 'react-powerplug'
import { DownloadDialog } from './../index'
import NameSpace from '../../../__docs__/NameSpace'
# Download Dialog
## Basic usage
<Playground>
<State
initial={{}}
>
{({ state, setState }) => (
<React.Fragment>
<div>
<pre>{JSON.stringify(state, null, 2)}</pre>
</div>
<div style={{ maxWidth: '400px', margin: '0 auto' }}>
<DownloadDialog />
</div>
</React.Fragment>
)}
</State>
</Playground>
## API
<Props of={DownloadDialog} />
## Translation Namespace
<NameSpace name="DownloadDialog" />
@@ -0,0 +1,2 @@
import DownloadDialog from './DownloadDialog';
export { DownloadDialog };
+3 -6
View File
@@ -1,8 +1,4 @@
import {
ExampleDropTarget,
StudyBrowser,
ThumbnailEntry,
} from './studyBrowser';
import { StudyBrowser, ThumbnailEntry } from './studyBrowser';
import { LayoutButton, LayoutChooser } from './layoutButton';
import { MeasurementTable, MeasurementTableItem } from './measurementTable';
import { Overlay, OverlayTrigger } from './overlayTrigger';
@@ -15,6 +11,7 @@ import {
import { Checkbox } from './checkbox';
import { CineDialog } from './cineDialog';
import { DownloadDialog } from './downloadDialog';
import { QuickSwitch } from './quickSwitch';
import { RoundedButtonGroup } from './roundedButtonGroup';
import { SelectTree } from './selectTree';
@@ -26,7 +23,7 @@ import { Tooltip } from './tooltip';
export {
Checkbox,
CineDialog,
ExampleDropTarget,
DownloadDialog,
LayoutButton,
LayoutChooser,
MeasurementTable,
@@ -0,0 +1,196 @@
.sb-container {
position: fixed;
width: var(--snackbar-size);
padding: 20px;
z-index: var(--snackbar-zIndex);
box-sizing: border-box;
height: auto;
}
.sb-topLeft {
top: 0;
bottom: auto;
left: 0;
right: auto;
}
.sb-topCenter {
left: 50%;
top: 0;
bottom: auto;
transform: translateX(-50%);
}
.sb-topRight {
top: 0;
bottom: auto;
left: auto;
right: 0;
}
.sb-bottomLeft {
top: auto;
bottom: 0px;
left: 0px;
right: auto;
}
.sb-bottomCenter {
left: 50%;
bottom: 0;
top: auto;
transform: translateX(-50%);
}
.sb-bottomRight {
top: auto;
bottom: 0px;
left: auto;
right: 0px;
margin: 10px 0 0;
}
.sb-topLeft .sb-item,
.sb-topCenter .sb-item,
.sb-topRight .sb-item {
margin: 10px 0 0;
}
.sb-bottomLeft .sb-item,
.sb-bottomCenter .sb-item,
.sb-bottomRight .sb-item {
margin: 0 0 10px;
}
.sb-closeBtn {
height: 20px;
opacity: 1;
overflow: hidden;
padding: 2px;
text-align: center;
text-shadow: none;
width: 20px;
cursor: pointer;
position: absolute;
right: 5px;
top: 5px;
transition: all 0.3s ease;
background: rgba(255, 255, 255, 0.6);
border-radius: 100%;
}
.sb-closeBtn:hover {
background: #fff;
}
.sb-closeIcon {
display: block;
font-size: 0;
height: 100%;
line-height: 0;
overflow: hidden;
position: relative;
width: 100%;
}
.sb-closeIcon:after,
.sb-closeIcon:before {
content: ' ';
display: block;
height: 2px;
transition: all 0.3s ease;
width: 12px;
background-color: #222;
opacity: 1;
position: absolute;
}
.sb-closeIcon:before {
left: 4px;
top: 3px;
transform: rotate(45deg);
transform-origin: 0px 50%;
}
.sb-closeIcon:after {
right: 3px;
top: 5px;
transform: rotate(-45deg);
transform-origin: calc(100% - 3px) 50%;
}
.sb-title {
font-size: 16px;
font-weight: bold;
}
.sb-message {
font-size: 14px;
word-break: break-all;
}
.sb-item {
position: relative;
transition: height 300ms ease;
animation: fadein 1s;
padding: 20px;
color: white;
overflow: hidden;
border-radius: 4px;
box-shadow: 0 6px 10px 0 rgba(0, 0, 0, 0.2), 0 1px 18px 0 rgba(0, 0, 0, 0.12),
0 3px 5px -1px rgba(0, 0, 0, 0.14);
}
.sb-item a {
color: white;
text-decoration: underline;
}
.sb-container .sb-hidden {
padding-top: 0;
padding-bottom: 0;
margin-bottom: 0;
height: 0;
opacity: 0;
transition: all 300ms ease;
}
.sb-success {
background-color: var(--snackbar-success);
}
.sb-error {
background-color: var(--snackbar-error);
}
.sb-warning {
background-color: var(--snackbar-warning);
}
.sb-info {
background-color: var(--snackbar-info);
}
@keyframes fadein {
from {
opacity: 0;
top: 30px;
}
to {
opacity: 1;
top: 0;
}
}
/* Internet Explorer */
@-ms-keyframes fadein {
from {
opacity: 0;
top: 30px;
}
to {
opacity: 1;
top: 0;
}
}
@@ -0,0 +1,53 @@
import React from 'react';
import SnackbarItem from './SnackbarItem';
import './Snackbar.css';
import { useSnackbarContext } from '../../utils/SnackbarProvider';
const SnackbarContainer = () => {
const { snackbarItems, hide } = useSnackbarContext();
const renderItem = item => {
return <SnackbarItem key={item.itemId} options={item} onClose={hide} />;
};
if (!snackbarItems) {
return null;
}
const renderItems = () => {
const items = {
topLeft: [],
topCenter: [],
topRight: [],
bottomLeft: [],
bottomCenter: [],
bottomRight: [],
};
snackbarItems.map(item => {
items[item.position].push(item);
});
return (
<div>
{Object.keys(items).map(pos => {
if (!items[pos].length) {
return null;
}
return (
<div key={pos} className={`sb-container sb-${pos}`}>
{items[pos].map(item => (
<div key={item.id}>{renderItem(item)}</div>
))}
</div>
);
})}
</div>
);
};
return <>{renderItems()}</>;
};
export default SnackbarContainer;
@@ -0,0 +1,31 @@
import React, { useState, useEffect } from 'react';
const SnackbarItem = ({ options, onClose }) => {
const handleClose = () => {
onClose(options.id);
};
useEffect(() => {
if (options.autoClose) {
setTimeout(() => {
handleClose();
}, options.duration);
}
}, []);
return (
<div
className={`${options.visible ? '' : 'sb-hidden'} sb-${
options.type
} sb-item`}
>
<span className="sb-closeBtn" onClick={handleClose}>
<span className="sb-closeIcon">x</span>
</span>
{options.title && <div className="sb-title">{options.title}</div>}
{options.message && <div className="sb-message">{options.message}</div>}
</div>
);
};
export default SnackbarItem;
@@ -0,0 +1,6 @@
export default {
INFO: 'info',
WARNING: 'warning',
SUCCESS: 'success',
ERROR: 'error',
};
@@ -1,3 +1,4 @@
/* global cornerstone */
import './ImageThumbnail.styl';
import React, { PureComponent } from 'react';
@@ -12,25 +13,6 @@ import ViewportLoadingIndicator from '../../viewer/ViewportLoadingIndicator';
// - Pass in the entire load and render function as a prop?
//import cornerstone from 'cornerstone-core';
/**
* Asynchronous wrapper around Cornerstone's renderToCanvas method.
*
* @param {HTMLElement} canvasElement An HTML <canvas> element
* @param {Image} image A Cornerstone Image
*
* @return {Promise} A promise tracking the progress of the rendering. Resolves empty.
*/
function renderAsync(canvasElement, image) {
return new Promise((resolve, reject) => {
try {
cornerstone.renderToCanvas(canvasElement, image);
resolve();
} catch (error) {
reject(error);
}
});
}
export default class ImageThumbnail extends PureComponent {
static propTypes = {
imageSrc: PropTypes.string,
@@ -52,40 +34,32 @@ export default class ImageThumbnail extends PureComponent {
super(props);
this.canvas = React.createRef();
const renderIntoCanvas = this.props.imageId && !this.props.imageSrc;
this.state = {
loading: renderIntoCanvas,
loading: this.shouldRenderToCanvas(),
};
}
shouldRenderToCanvas() {
return this.props.imageId && !this.props.imageSrc;
}
componentDidMount() {
const renderIntoCanvas = this.props.imageId && !this.props.imageSrc;
if (renderIntoCanvas) {
const { imageId } = this.props;
const canvas = this.canvas.current;
cornerstone.loadAndCacheImage(imageId).then(
image => {
renderAsync(canvas, image).then(
() => {
this.setState({
loading: false,
});
},
error => {
// TODO: Set state?
throw new Error(error);
}
);
},
error => {
// TODO: Set state?
if (this.shouldRenderToCanvas()) {
cornerstone
.loadAndCacheImage(this.props.imageId)
.then(image => {
cornerstone.renderToCanvas(this.canvas.current, image);
this.setState({
loading: false,
});
})
.catch(error => {
this.setState({
loading: false,
error: true,
});
throw new Error(error);
}
);
});
}
}
@@ -100,12 +74,10 @@ export default class ImageThumbnail extends PureComponent {
const showStackLoadingProgressBar =
this.props.stackPercentComplete !== undefined;
const renderIntoCanvas = this.props.imageId && !this.props.imageSrc;
return (
<div className="ImageThumbnail">
<div className="image-thumbnail-canvas">
{renderIntoCanvas ? (
{this.shouldRenderToCanvas() ? (
<canvas
ref={this.canvas}
width={this.props.width}
@@ -130,6 +102,9 @@ export default class ImageThumbnail extends PureComponent {
/>
</div>
)}
{this.state.loading && (
<div className="image-thumbnail-loading-indicator"></div>
)}
</div>
);
}
@@ -26,6 +26,36 @@
-webkit-background-clip: padding
background-clip: padding-box
// Thumbnail Loading Indicator
.image-thumbnail-loading-indicator
position: absolute
left: 50%
top: 50%
margin: -22px 0 0 -22px
display: block
width: 44px
height: 44px
&:after
content: " "
display: block
width: 32px
height: 32px
margin: 1px
border-radius: 50%
border: 5px solid var(--ui-border-color-dark)
border-color: var(--ui-border-color-dark) transparent var(--ui-border-color-dark) transparent
animation: image-thumbnail-loading-indicator 1.2s linear infinite
@keyframes image-thumbnail-loading-indicator
0%
transform: rotate(0deg)
100%
transform: rotate(360deg)
// The End...
.image-thumbnail-canvas
height: 100%
overflow: hidden
@@ -36,7 +66,6 @@
-webkit-user-drag: none
pointer-events: none
.thumbnailLoadingIndicator
display: none
pointer-events: none
@@ -25,7 +25,7 @@ class StudyBrowser extends Component {
if (this.props.supportsDragAndDrop) {
return (
<ThumbnailEntryDragSource
key={`${studyIndex}_${thumbIndex}`}
key={thumb.displaySetInstanceUid}
{...study}
{...thumb}
id={`${studyIndex}_${thumbIndex}`}
@@ -35,9 +35,9 @@ class StudyBrowser extends Component {
);
} else {
return (
<div className="ThumbnailEntryContainer">
<div className="ThumbnailEntryContainer" data-cy="thumbnail-list">
<ThumbnailEntry
key={`${studyIndex}_${thumbIndex}`}
key={thumb.displaySetInstanceUid}
{...study}
{...thumb}
id={`${studyIndex}_${thumbIndex}`}
@@ -38,7 +38,6 @@ class ThumbnailEntry extends Component {
let className = classnames('ThumbnailEntry noselect', {
active: this.props.active,
});
const infoOnly = false;
let contents = null;
if (this.props.imageSrc || this.props.imageId) {
@@ -54,8 +53,10 @@ class ThumbnailEntry extends Component {
);
} else if (this.props.altImageText) {
contents = (
<div className={'alt-image-text p-x-1'}>
<h1>{this.props.altImageText}</h1>
<div className="p-x-1">
<div className="alt-image-text">
<h1>{this.props.altImageText}</h1>
</div>
</div>
);
}
@@ -69,23 +70,23 @@ class ThumbnailEntry extends Component {
>
{contents}
<div
className={infoOnly ? 'series-details info-only' : 'series-details'}
className="series-details"
>
<div className="series-description">
{this.props.seriesDescription}
</div>
<div className="series-information">
<div className="item item-series clearfix">
<div className="item item-series">
<div className="icon">S:</div>
<div className="value">{this.props.seriesNumber}</div>
</div>
{hasInstanceNumber && (
<div className="item item-series clearfix">
<div className="item item-series">
<div className="icon">I:</div>
<div className="value">{this.props.instanceNumber}</div>
</div>
)}
<div className="item item-frames clearfix">
<div className="item item-frames">
<div className="icon">
<div />
</div>
@@ -31,8 +31,6 @@
color: var(--text-primary-color);
.series-details
display: flex;
flex-direction: row;
color: var(--text-primary-color);
font-size: 14px
line-height: 1.3em
@@ -44,9 +42,6 @@
position: relative
word-wrap: break-word
.series-description
flex-grow: 1
&.info-only
.series-description
display: none
@@ -67,36 +62,33 @@
float: none
line-height: 25px
.value
margin-left: 0
width: auto
.series-information
padding-right: 4px
max-width: 50px
display: flex
flex-direction: row
align-items: center
.item
flex: 1
text-align: center
.item-frames .icon
height: 18px
.value
color: var(--text-secondary-color);
display: inline-block
float: right
display: inline
font-size: 12px
margin-left: 4px
overflow: hidden
text-overflow: ellipsis
white-space: nowrap
width: calc(100% - 15px)
.icon
color: var(--active-color);
display: inline-block
float: left
display: inline
font-size: 10px
font-weight: 900
text-align: right
width: 11px
div
background-color: var(--series-count-background-color);
@@ -45,7 +45,7 @@ class ThumbnailEntryDragSource extends Component {
const dropEffect = 'copy';
return connectDragSource(
<div className="ThumbnailEntryContainer">
<div className="ThumbnailEntryContainer" data-cy="thumbnail-list">
<DragPreview {...this.props} />
<ThumbnailEntry {...this.props} />
</div>,
@@ -8,7 +8,8 @@ import {
onThumbnailClick,
onThumbnailDoubleClick,
} from './exampleStudies.js';
import { ExampleDropTarget, StudyBrowser } from './../index.js';
import ExampleDropTarget from './ExampleDropTarget.js';
import { StudyBrowser } from './../index.js';
class StudyBrowserContainer extends Component {
render() {
@@ -1,3 +1,2 @@
export { ExampleDropTarget } from './ExampleDropTarget.js';
export { StudyBrowser } from './StudyBrowser.js';
export { ThumbnailEntry } from './ThumbnailEntry.js';
+165 -109
View File
@@ -11,11 +11,79 @@ import { StudylistToolbar } from './StudyListToolbar.js';
import { isInclusivelyBeforeDay } from 'react-dates';
import moment from 'moment';
import debounce from 'lodash.debounce';
import isEqual from 'lodash.isequal';
import { withTranslation } from '../../utils/LanguageProvider';
const today = moment();
const lastWeek = moment().subtract(7, 'day');
const lastMonth = moment().subtract(1, 'month');
function getPaginationFragment(
props,
searchData,
nextPageCb,
prevPageCb,
changeRowsPerPageCb
) {
return (
<PaginationArea
pageOptions={props.pageOptions}
currentPage={searchData.currentPage}
nextPageFunc={nextPageCb}
prevPageFunc={prevPageCb}
onRowsPerPageChange={changeRowsPerPageCb}
rowsPerPage={searchData.rowsPerPage}
recordCount={props.studies.length}
/>
);
}
function getTableMeta(translate) {
return {
patientName: {
displayText: translate('PatientName'),
sort: 0,
},
patientId: {
displayText: translate('MRN'),
sort: 0,
},
accessionNumber: {
displayText: translate('AccessionNumber'),
sort: 0,
},
studyDate: {
displayText: translate('StudyDate'),
inputType: 'date-range',
sort: 0,
},
modalities: {
displayText: translate('Modality'),
sort: 0,
},
studyDescription: {
displayText: translate('StudyDescription'),
sort: 0,
},
};
}
function getNoListFragment(translate, studies, error, loading) {
if (loading) {
return (
<div className="loading">
<StudyListLoadingText />
</div>
);
} else if (error) {
return (
<div className="notFound">
{translate('There was an error fetching studies')}
</div>
);
} else if (!studies.length) {
return <div className="notFound">{translate('No matching results')}</div>;
}
}
class StudyList extends Component {
static propTypes = {
@@ -111,24 +179,27 @@ class StudyList extends Component {
getBlurHandler(key) {
return event => {
this.delayedSearch.cancel();
this.setSearchData(key, event.target.value, this.search);
this.setSearchData(key, event.target.value);
};
}
setSearchData(key, value, callback) {
const searchData = this.state.searchData;
setSearchData(key, value) {
const searchData = { ...this.state.searchData };
searchData[key] = value;
this.setState({ searchData }, callback);
if (!isEqual(searchData[key], this.state.searchData[key])) {
this.setState({ ...this.state, searchData });
}
}
setSearchDataBatch(keyValues, callback) {
const searchData = this.state.searchData;
setSearchDataBatch(keyValues) {
const searchData = { ...this.state.searchData };
Object.keys(keyValues).forEach(key => {
searchData[key] = keyValues[key];
});
this.setState({ searchData }, callback);
this.setState({ searchData });
}
async onInputKeydown(event) {
@@ -138,7 +209,7 @@ class StudyList extends Component {
this.delayedSearch.cancel();
// reset the page because user is doing a new search
this.setSearchData('currentPage', 0, this.search);
this.setSearchData('currentPage', 0);
}
}
@@ -154,45 +225,21 @@ class StudyList extends Component {
}
}
renderNoMachingResults() {
if (!this.props.studies.length && !this.state.error) {
return <div className="notFound">No matching results</div>;
}
}
renderHasError() {
if (this.state.error) {
return (
<div className="notFound">There was an error fetching studies</div>
);
}
}
renderIsLoading() {
if (this.state.loading) {
return (
<div className="loading">
<StudyListLoadingText />
</div>
);
}
}
nextPage(currentPage) {
currentPage = currentPage + 1;
this.delayedSearch.cancel();
this.setSearchData('currentPage', currentPage, this.search);
this.setSearchData('currentPage', currentPage);
}
prevPage(currentPage) {
currentPage = currentPage - 1;
this.delayedSearch.cancel();
this.setSearchData('currentPage', currentPage, this.search);
this.setSearchData('currentPage', currentPage);
}
onRowsPerPageChange(rowsPerPage) {
this.delayedSearch.cancel();
this.setSearchDataBatch({ rowsPerPage, currentPage: 0 }, this.search);
this.setSearchDataBatch({ rowsPerPage, currentPage: 0 });
}
onSortClick(field) {
@@ -213,7 +260,7 @@ class StudyList extends Component {
}
this.delayedSearch.cancel();
this.setSearchData('sortData', { field, order }, this.search);
this.setSearchData('sortData', { field, order });
};
}
@@ -221,10 +268,39 @@ class StudyList extends Component {
this.setState({ highlightedItem: studyItemUid });
}
renderTableRow(study) {
getTableRow(study, index) {
const trKey = `trStudy${index}${study.studyInstanceUid}`;
if (!study) {
return;
}
const getTableCell = (
study,
studyKey,
emptyValue = '',
emptyClass = ''
) => {
const componentKey = `td${studyKey}`;
const isValidValue = study && typeof study[studyKey] === 'string';
let className = emptyClass;
let value = emptyValue;
if (isValidValue) {
className = studyKey;
value = study[studyKey];
}
return (
<td key={componentKey} className={className}>
{value}
</td>
);
};
return (
<tr
key={study.studyInstanceUid}
key={trKey}
className={
this.state.highlightedItem === study.studyInstanceUid
? 'studylistStudy noselect active'
@@ -241,47 +317,35 @@ class StudyList extends Component {
this.props.onSelectItem(study.studyInstanceUid);
}}
>
<td className={study.patientName ? 'patientName' : 'emptyCell'}>
{study.patientName || `(${this.props.t('Empty')})`}
</td>
<td className="patientId">{study.patientId}</td>
<td className="accessionNumber">{study.accessionNumber}</td>
<td className="studyDate">{study.studyDate}</td>
<td className="modalities">{study.modalities}</td>
<td className="studyDescription">{study.studyDescription}</td>
{getTableCell(
study,
'patientName',
`(${this.props.t('Empty')})`,
'emptyCell'
)}
{getTableCell(study, 'patientId')}
{getTableCell(study, 'accessionNumber')}
{getTableCell(study, 'studyDate')}
{getTableCell(study, 'modalities')}
{getTableCell(study, 'studyDescription')}
</tr>
);
}
componentDidUpdate(previousProps, previousState) {
if (!isEqual(previousState.searchData, this.state.searchData)) {
this.search();
}
}
renderTableBody(noListFragment) {
return !noListFragment && this.props.studies
? this.props.studies.map(this.getTableRow.bind(this))
: null;
}
render() {
const tableMeta = {
patientName: {
displayText: this.props.t('PatientName'),
sort: 0,
},
patientId: {
displayText: this.props.t('MRN'),
sort: 0,
},
accessionNumber: {
displayText: this.props.t('AccessionNumber'),
sort: 0,
},
studyDate: {
displayText: this.props.t('StudyDate'),
inputType: 'date-range',
sort: 0,
},
modalities: {
displayText: this.props.t('Modality'),
sort: 0,
},
studyDescription: {
displayText: this.props.t('StudyDescription'),
sort: 0,
},
};
const tableMeta = getTableMeta(this.props.t);
// Apply sort
const sortedFieldName = this.state.searchData.sortData.field;
@@ -294,14 +358,20 @@ class StudyList extends Component {
// Sort Icons
const sortIcons = ['sort', 'sort-up', 'sort-down'];
const noListFragment = getNoListFragment(
this.props.t,
this.props.studies,
this.state.error,
this.props.loading || this.state.loading
);
const tableBody = this.renderTableBody(noListFragment);
const studiesNum = (this.props.studies && this.props.studies.length) || 0;
return (
<div className="StudyList">
<div className="studyListToolbar clearfix">
<div className="header pull-left">{this.props.t('StudyList')}</div>
<div className="studyCount pull-right">
{this.props.studies.length}
</div>
<div className="studyCount pull-right">{studiesNum}</div>
<div className="pull-right">
{this.props.studyListFunctionsEnabled ? (
<StudylistToolbar onImport={this.props.onImport} />
@@ -367,22 +437,16 @@ class StudyList extends Component {
(this.state.focusedInput === 'endDate' ||
preset)
) {
this.setSearchDataBatch(
{
studyDateFrom: startDate.toDate(),
studyDateTo: endDate.toDate(),
},
this.search
);
this.setSearchDataBatch({
studyDateFrom: startDate.toDate(),
studyDateTo: endDate.toDate(),
});
this.setState({ focusedInput: false });
} else if (!startDate && !endDate) {
this.setSearchDataBatch(
{
studyDateFrom: null,
studyDateTo: null,
},
this.search
);
this.setSearchDataBatch({
studyDateFrom: null,
studyDateTo: null,
});
}
}}
focusedInput={this.state.focusedInput}
@@ -398,26 +462,18 @@ class StudyList extends Component {
})}
</tr>
</thead>
<tbody id="studyListData">
{this.props.studies.map(study => {
return this.renderTableRow(study);
})}
</tbody>
<tbody id="studyListData">{tableBody}</tbody>
</table>
{this.renderIsLoading()}
{this.renderHasError()}
{this.renderNoMachingResults()}
<PaginationArea
pageOptions={this.props.pageOptions}
currentPage={this.state.searchData.currentPage}
nextPageFunc={this.nextPage}
prevPageFunc={this.prevPage}
onRowsPerPageChange={this.onRowsPerPageChange}
rowsPerPage={this.state.searchData.rowsPerPage}
recordCount={this.props.studies.length}
/>
{noListFragment
? noListFragment
: getPaginationFragment(
this.props,
this.state.searchData,
this.nextPage,
this.prevPage,
this.onRowsPerPageChange
)}
</div>
</div>
);
@@ -82,9 +82,14 @@ placeholder-color(c)
position: absolute
z-index: 2
.loading-text
color: var(--table-text-secondary-color)
font-size: 30px
.loading
display: flex;
justify-content: center;
.loading-text
color: var(--table-text-secondary-color)
font-size: 30px
width: fit-content;
.notFound
color: var(--table-text-secondary-color)
@@ -1,12 +1,17 @@
import { Icon } from './../../elements/Icon';
import React from 'react';
import { withTranslation } from '../../utils/LanguageProvider';
function StudyListLoadingText() {
function StudyListLoadingText({ t: translate }) {
return (
<div className="loading-text">
Loading... <Icon name="circle-notch" animation="pulse" />
{translate('Loading')}... <Icon name="circle-notch" animation="pulse" />
</div>
);
}
export { StudyListLoadingText };
const connectedComponent = withTranslation('StudyListLoadingText')(
StudyListLoadingText
);
export { connectedComponent as StudyListLoadingText };
@@ -1,14 +1,16 @@
import React, { Component } from 'react';
import PropTypes from 'prop-types';
import Modal from 'react-bootstrap-modal';
import detect from 'browser-detect';
import './AboutModal.styl';
import { withTranslation } from '../../utils/LanguageProvider';
import 'react-bootstrap-modal/lib/css/rbm-patch.css';
// TODO: Is this the only component importing these?
import './../../design/styles/common/modal.styl';
export class AboutModal extends Component {
class AboutModal extends Component {
constructor(props) {
super(props);
}
@@ -18,16 +20,41 @@ export class AboutModal extends Component {
onCancel: PropTypes.func,
};
static itemsPreset = [
{
name: 'Repository URL',
value: 'https://github.com/OHIF/Viewers/',
},
{
name: 'Latest Master Commits',
value: 'https://github.com/OHIF/Viewers/commits/master',
},
];
itemsPreset() {
const { t } = this.props;
const browser = detect();
const capitalize = s =>
s.substr(0, 1).toUpperCase() + s.substr(1).toLowerCase();
return [
{
name: t('Repository URL'),
value: 'https://github.com/OHIF/Viewers/',
link: 'https://github.com/OHIF/Viewers/',
},
{
name: t('Latest Master Commits'),
value: 'https://github.com/OHIF/Viewers/commits/master',
link: 'https://github.com/OHIF/Viewers/commits/master',
},
{
name: 'Version Number',
value: process.env.VERSION_NUMBER,
},
{
name: t('Build Number'),
value: process.env.BUILD_NUM,
},
{
name: t('Browser'),
value: `${capitalize(browser.name)} ${browser.version}`,
},
{
name: t('OS'),
value: browser.os,
},
];
}
static defaultProps = {
isOpen: false,
@@ -38,15 +65,20 @@ export class AboutModal extends Component {
<tr key={item.name}>
<td>{item.name}</td>
<td>
<a target="_blank" href={item.value}>
{item.value}
</a>
{item.link ? (
<a target="_blank" href={item.link}>
{item.value}
</a>
) : (
item.value
)}
</td>
</tr>
);
}
render() {
const { t } = this.props;
return (
<Modal
show={this.props.isOpen}
@@ -58,43 +90,45 @@ export class AboutModal extends Component {
keyboard={false}
>
<Modal.Header closeButton>
<Modal.Title>About</Modal.Title>
<Modal.Title>{t('OHIF Viewer - About')}</Modal.Title>
</Modal.Header>
<Modal.Body>
<Modal.Body data-cy="about-modal">
<div className="btn-group">
<a
className="btn btn-default"
target="_blank"
href="https://groups.google.com/forum/#!forum/cornerstone-platform"
>
Visit the forum
{t('Visit the forum')}
</a>
{` `}
<a
className="btn btn-default"
target="_blank"
href="https://github.com/OHIF/Viewers/issues"
href="https://github.com/OHIF/Viewers/issues/new/choose"
>
Report an issue
{t('Report an issue')}
</a>
{` `}
<a
className="btn btn-default"
target="_blank"
href="http://ohif.org"
>
More details
{t('More details')}
</a>
</div>
<div>
<h3>Version Information</h3>
<h3>{t('Version Information')}</h3>
<table className="table table-responsive">
<thead>
<tr>
<th>Name</th>
<th>Value</th>
<th>{t('Name')}</th>
<th>{t('Value')}</th>
</tr>
</thead>
<tbody>
{AboutModal.itemsPreset.map(item => this.renderTableRow(item))}
{this.itemsPreset().map(item => this.renderTableRow(item))}
</tbody>
</table>
</div>
@@ -103,3 +137,7 @@ export class AboutModal extends Component {
);
}
}
const connectedComponent = withTranslation('AboutModal')(AboutModal);
export { connectedComponent as AboutModal };
export default connectedComponent;
@@ -12,6 +12,7 @@
z-index: 1050;
-webkit-overflow-scrolling: touch;
outline: 0;
background: rgba(0,0,0,0.5);
.modal-dialog
+2
View File
@@ -53,6 +53,7 @@ import measureTargetUn from './icons/measure-target-un.svg';
import measureTemp from './icons/measure-temp.svg';
import objectGroup from './icons/object-group.svg';
import ohifLogo from './icons/ohif-logo.svg';
import ohifTextLogo from './icons/ohif-text-logo.svg';
import oval from './icons/oval.svg';
import palette from './icons/palette.svg';
import play from './icons/play.svg';
@@ -120,6 +121,7 @@ const ICONS = {
'inline-edit': inlineEdit,
list,
'ohif-logo': ohifLogo,
'ohif-text-logo': ohifTextLogo,
lock,
play,
database,
@@ -0,0 +1,3 @@
<svg viewBox="0 0 224 15" fill="none" xmlns="http://www.w3.org/2000/svg">
<path d="M10.416 5.932C10.416 7.46267 9.954 8.70867 9.03 9.67C8.11533 10.622 6.958 11.098 5.558 11.098C4.16733 11.098 3.00533 10.6173 2.072 9.656C1.13867 8.68533 0.672 7.43933 0.672 5.918C0.672 4.38733 1.15267 3.16467 2.114 2.25C3.07533 1.326 4.22333 0.863999 5.558 0.863999C6.89267 0.863999 8.036 1.326 8.988 2.25C9.94 3.16467 10.416 4.392 10.416 5.932ZM3.052 8.9C3.77067 9.60933 4.606 9.964 5.558 9.964C6.51 9.964 7.34067 9.60933 8.05 8.9C8.75933 8.18133 9.114 7.20133 9.114 5.96C9.114 4.70933 8.75 3.734 8.022 3.034C7.30333 2.32467 6.482 1.97 5.558 1.97C4.634 1.97 3.808 2.32467 3.08 3.034C2.352 3.734 1.988 4.70933 1.988 5.96C1.988 7.20133 2.34267 8.18133 3.052 8.9ZM14.6296 14.15H11.8156C11.6942 14.15 11.6336 14.094 11.6336 13.982V13.38C11.6336 13.268 11.6942 13.212 11.8156 13.212H12.5996V5.05H11.8436C11.7222 5.05 11.6616 4.994 11.6616 4.882V4.28C11.6616 4.168 11.7222 4.112 11.8436 4.112H13.4816C13.6029 4.112 13.6636 4.168 13.6636 4.28L13.6496 5.386H13.6636C13.8409 5.00333 14.1256 4.68133 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9.99667 25.0651 9.754C25.4758 9.51133 25.7511 9.27333 25.8911 9.04C25.9658 8.94667 26.0498 8.93267 26.1431 8.998L26.5211 9.376C26.5771 9.432 26.6051 9.48333 26.6051 9.53C26.6051 9.56733 26.5818 9.61867 26.5351 9.684C26.4978 9.74933 26.4138 9.852 26.2831 9.992C26.1525 10.132 25.9658 10.2907 25.7231 10.468C25.4898 10.6453 25.1818 10.7947 24.7991 10.916C24.4258 11.0373 24.0245 11.098 23.5951 11.098C22.6151 11.098 21.7938 10.776 21.1311 10.132C20.4778 9.488 20.1511 8.62467 20.1511 7.542C20.1511 6.45 20.4778 5.59133 21.1311 4.966C21.7845 4.33133 22.5825 4.014 23.5251 4.014C24.4771 4.014 25.2238 4.322 25.7651 4.938C26.3065 5.54467 26.5771 6.366 26.5771 7.402C26.5771 7.43933 26.5771 7.47667 26.5771 7.514C26.5771 7.63533 26.5118 7.696 26.3811 7.696ZM25.4151 6.842C25.3871 6.26333 25.2051 5.80133 24.8691 5.456C24.5331 5.11067 24.0851 4.938 23.5251 4.938C22.9651 4.938 22.4845 5.09667 22.0831 5.414C21.6818 5.73133 21.4438 6.20733 21.3691 6.842H25.4151ZM35.1323 11H33.8023C33.401 11 33.2003 10.804 33.2003 10.412V6.73C33.2003 6.18867 33.0697 5.76867 32.8083 5.47C32.547 5.17133 32.1643 5.022 31.6603 5.022C30.9417 5.022 30.3817 5.316 29.9803 5.904C29.9337 5.96 29.873 6.06267 29.7983 6.212V10.062H30.5403C30.6617 10.062 30.7223 10.118 30.7223 10.23V10.832C30.7223 10.944 30.6617 11 30.5403 11H27.8663C27.745 11 27.6843 10.944 27.6843 10.832V10.23C27.6843 10.118 27.745 10.062 27.8663 10.062H28.6363V5.05H27.8663C27.745 5.05 27.6843 4.994 27.6843 4.882V4.28C27.6843 4.168 27.745 4.112 27.8663 4.112H29.5043C29.6257 4.112 29.6863 4.168 29.6863 4.28L29.6583 5.232H29.7003C30.1857 4.42 30.937 4.014 31.9543 4.014C32.701 4.014 33.2843 4.23333 33.7043 4.672C34.1243 5.11067 34.339 5.70333 34.3483 6.45V10.062H35.1323C35.2537 10.062 35.3143 10.118 35.3143 10.23V10.832C35.3143 10.944 35.2537 11 35.1323 11ZM50.8763 11H47.5023C47.3903 11 47.3343 10.944 47.3343 10.832V10.118C47.3343 10.006 47.3903 9.95 47.5023 9.95H48.5803V6.52H43.3723V9.95H44.4503C44.5717 9.95 44.6323 10.006 44.6323 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9.53C58.2692 9.56733 58.245Line truncated
</svg>

After

Width:  |  Height:  |  Size: 25 KiB

@@ -1,3 +1,3 @@
<svg width="3.73em" height=".25em" viewBox="0 0 224 15" fill="none" xmlns="http://www.w3.org/2000/svg">
<svg viewBox="0 0 224 15" fill="none" xmlns="http://www.w3.org/2000/svg">
<path d="M10.416 5.932C10.416 7.46267 9.954 8.70867 9.03 9.67C8.11533 10.622 6.958 11.098 5.558 11.098C4.16733 11.098 3.00533 10.6173 2.072 9.656C1.13867 8.68533 0.672 7.43933 0.672 5.918C0.672 4.38733 1.15267 3.16467 2.114 2.25C3.07533 1.326 4.22333 0.863999 5.558 0.863999C6.89267 0.863999 8.036 1.326 8.988 2.25C9.94 3.16467 10.416 4.392 10.416 5.932ZM3.052 8.9C3.77067 9.60933 4.606 9.964 5.558 9.964C6.51 9.964 7.34067 9.60933 8.05 8.9C8.75933 8.18133 9.114 7.20133 9.114 5.96C9.114 4.70933 8.75 3.734 8.022 3.034C7.30333 2.32467 6.482 1.97 5.558 1.97C4.634 1.97 3.808 2.32467 3.08 3.034C2.352 3.734 1.988 4.70933 1.988 5.96C1.988 7.20133 2.34267 8.18133 3.052 8.9ZM14.6296 14.15H11.8156C11.6942 14.15 11.6336 14.094 11.6336 13.982V13.38C11.6336 13.268 11.6942 13.212 11.8156 13.212H12.5996V5.05H11.8436C11.7222 5.05 11.6616 4.994 11.6616 4.882V4.28C11.6616 4.168 11.7222 4.112 11.8436 4.112H13.4816C13.6029 4.112 13.6636 4.168 13.6636 4.28L13.6496 5.386H13.6636C13.8409 5.00333 14.1256 4.68133 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9.53C58.2692 9.56733 58.245Line truncated
</svg>

Before

Width:  |  Height:  |  Size: 25 KiB

After

Width:  |  Height:  |  Size: 25 KiB

@@ -46,6 +46,7 @@ class DropdownMenu extends Component {
<button
key={key}
className="dd-item"
data-cy="about-item-menu"
onClick={() => this.handleOnClick(onClick)}
>
{icon && <Icon {...icon} className="dd-item-icon" />}
@@ -119,7 +120,11 @@ class DropdownMenu extends Component {
render() {
return (
<div className="dd-menu" ref={node => (this.node = node)}>
<div
className="dd-menu"
data-cy="options-menu"
ref={node => (this.node = node)}
>
<div className="dd-menu-toggle" onClick={this.toggleList}>
{this.renderTitleElement()}
</div>
+20 -28
View File
@@ -1,42 +1,34 @@
.select-ohif {
display: block;
font-family: Roboto, Oxygen, Ubuntu, Cantarell, 'Open Sans', 'Helvetica Neue',
sans-serif;
font-size: 0.8em;
font-weight: 600;
color: #444;
line-height: 1.3;
padding: 0.6em 1.4em 0.5em 0.8em;
width: 100%;
max-width: 100%;
.select-ohif-container .select-ohif {
display: inline-block;
font-size: 10pt;
box-sizing: border-box;
margin: 0;
border: 1px solid #aaa;
box-shadow: 0 1px 0 1px rgba(0, 0, 0, 0.04);
border-radius: 0.5em;
-moz-appearance: none;
-webkit-appearance: none;
appearance: none;
background-color: #fff;
background-image: url('data:image/svg+xml;charset=US-ASCII,%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%22292.4%22%20height%3D%22292.4%22%3E%3Cpath%20fill%3D%22%23007CB2%22%20d%3D%22M287%2069.4a17.6%2017.6%200%200%200-13-5.4H18.4c-5%200-9.3%201.8-12.9%205.4A17.6%2017.6%200%200%200%200%2082.2c0%205%201.8%209.3%205.4%2012.9l128%20127.9c3.6%203.6%207.8%205.4%2012.8%205.4s9.2-1.8%2012.8-5.4L287%2095c3.5-3.5%205.4-7.8%205.4-12.8%200-5-1.9-9.2-5.5-12.8z%22%2F%3E%3C%2Fsvg%3E'),
linear-gradient(to bottom, #ffffff 0%, #e5e5e5 100%);
background-repeat: no-repeat, repeat;
background-position: right 0.7em top 50%, 0 0;
background-size: 0.65em auto, 100%;
width: auto;
transition: all 0.15s ease;
background-color: var(--input-background-color);
line-height: 16px;
color: var(--input-placeholder-color);
height: 40px;
margin: 0 5px 20px 5px;
padding: 0 20px;
placeholder-color: var(--input-placeholder-color);
cursor: pointer;
border: none;
font-weight: normal;
border-radius: 4px;
}
.select-ohif::-ms-expand {
.select-ohif-container .select-ohif::-ms-expand {
display: none;
}
.select-ohif:hover {
border-color: #888;
.select-ohif-container .select-ohif-label {
padding: 5px;
}
.select-ohif:focus {
outline: none;
}
.select-ohif option {
.select-ohif-container .select-ohif option {
font-weight: normal;
}
+30 -25
View File
@@ -7,9 +7,19 @@ import PropTypes from 'prop-types';
class Select extends Component {
constructor(props) {
super(props);
this.state = { value: this.props.value };
}
static propTypes = {
options: PropTypes.arrayOf(
PropTypes.shape({
key: PropTypes.string.isRequired,
value: PropTypes.string.isRequired,
})
),
value: PropTypes.string,
onChange: PropTypes.func,
};
handleChange = event => {
const value = event.target.value;
this.setState({ value });
@@ -18,32 +28,27 @@ class Select extends Component {
render() {
return (
<select
className="select-ohif"
value={this.state.selected}
onChange={this.handleChange}
>
{this.props.options.map(({ key, value }) => {
return (
<option key={key} value={value}>
{key}
</option>
);
})}
</select>
<div className="select-ohif-container">
<label className="select-ohif-label" htmlFor={this.id}>
{this.props.label}
<select
className="form-control select-ohif"
{...this.props}
>
{this.props.options.map(({ key, value }) => {
return (
<option key={key} value={value}>
{key}
</option>
);
})}
</select>
</label>
</div>
);
}
}
Select.propTypes = {
options: PropTypes.arrayOf(
PropTypes.shape({
key: PropTypes.string.isRequired,
value: PropTypes.string.isRequired,
})
),
value: PropTypes.string,
onChange: PropTypes.func,
};
export { Select };
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