chore(release): publish [skip ci]

- @ohif/extension-cornerstone@1.0.0
 - @ohif/extension-dicom-html@0.50.5
 - @ohif/extension-vtk@0.50.8
 - @ohif/core@0.50.6
 - @ohif/viewer@1.0.1

.netlify/www/_redirects

@@ -0,0 +1,6 @@
+# Specific to our deploy-preview
+# Our docs are published using CircleCI + GitBook
+# Confgure redirects using netlify.toml
+
+# PWA Demo
+/pwa/* /pwa/index.html 200

docs/_redirects

@@ -0,0 +1,3 @@
+# Netlify redirects
+# SPA rules for our docs
+/*    /index.html   200

docs/latest/contributing/index.md

@@ -10,7 +10,15 @@ minimum, you may want to read the following documentation:
 - [Essentials: Getting Started](./essentials/getting-started.md)
 - [Advanced: Architecture](./advanced/architecture.md)
 
-### When changes impact multiple repositories
+Pull requests that are:
+
+- Small
+- [Well tested](./testing.md)
+- Decoupled
+
+Are much more likely to get reviewed and merged in a timely manner.
+
+## When changes impact multiple repositories
 
 While this can be tricky, we've tried to reduce how often this situation crops
 up this with our [recent switch to a monorepo][monorepo]. Our maintained
@@ -22,7 +30,7 @@ package outside of the monorepo is most common with extension development. Let's
 demonstrate how to accomplish this with two commonly forked extension
 dependencies:
 
-#### `cornerstone-tools`
+### `cornerstone-tools`
 
 On your local file system:
 
@@ -47,7 +55,12 @@ On your local file system:
 As you make changed to `cornerstone-tools`, and it's output is rebuilt, you
 should see the following behavior:
 
-<!-- Insert GIF here -->
+<div style="text-align: center;">
+  <a href="/assets/img/cornerstone-tools-link.gif">
+    <img src="/assets/img/cornerstone-tools-link.gif" alt="Example of linked cornerstone-tools package" style="margin: 0 auto; max-width: 500px;" />
+  </a>
+  <div><i>example of linked cornerstone-tools package</i></div>
+</div>
 
 If you wish to stop using your local package, run the following commands in the
 `ohif/viewers` repository root:
@@ -55,9 +68,27 @@ If you wish to stop using your local package, run the following commands in the
 - `yarn unlink cornerstone-tools`
 - `yarn install --force`
 
-#### `react-vtkjs-viewport`
+### `react-vtkjs-viewport`
 
-...
+On your local file system:
+
+```bash
+# code/my-projects/
+.
+├── ohif/react-vtkjs-viewport
+└── ohif/viewers
+```
+
+- Open a terminal/shell
+- Navigate to `ohif/react-vtkjs-viewport`
+  - `yarn install`
+  - [`yarn link`](https://yarnpkg.com/en/docs/cli/link)
+  - `yarn run start`
+- Open a new terminal/shell
+- Navigate to `ohif/viewers`.
+  - `yarn install`
+  - [`yarn link react-vtkjs-viewport`](https://yarnpkg.com/en/docs/cli/link)
+  - `yarn run dev`
 
 #### Other linkage notes
 

docs/latest/deployment/recipes/build-for-production.md

@@ -19,9 +19,6 @@ _With Git:_
 ```bash
 # Clone the remote repository to your local machine
 git clone https://github.com/OHIF/Viewers.git
-
-# Make sure the local code reflects the `react` version of the OHIF Viewer
-git checkout react
 ```
 
 More on: _[`git clone`](https://git-scm.com/docs/git-clone),
@@ -29,7 +26,7 @@ More on: _[`git clone`](https://git-scm.com/docs/git-clone),
 
 _From .zip:_
 
-[OHIF/Viewers: react.zip](https://github.com/OHIF/Viewers/archive/react.zip)
+[OHIF/Viewers: react.zip](https://github.com/OHIF/Viewers/archive/master.zip)
 
 ### Restore Dependencies & Build
 
@@ -37,20 +34,24 @@ Open your terminal, and navigate to the directory containing the source files.
 Next run these commands:
 
 ```js
+// If you haven't already, enable yarn workspaces
+yarn config set workspaces-experimental true
+
 // Restore dependencies
 yarn install
 
 // Build source code for production
-yarn run build:web
+yarn run build
 ```
 
-If everything worked as expected, you should have a new `build/` directory in
-the project's folder. It should roughly resemble the following:
+If everything worked as expected, you should have a new `dist/` directory in the
+project's folder. It should roughly resemble the following:
 
 ```bash
-build
-├── config/
-├── static/
+dist/
+├── app-config.js
+├── app.bundle.js
+├── app.css
 ├── index.html
 ├── manifest.json
 ├── service-worker.js
@@ -64,60 +65,15 @@ how to configure the project for your own imaging archive below.
 
 ### Configuration
 
-> This step assumes you have an imaging archive. If you need assistance setting
-> one up, check out the [`Data Source` Guide](./../../essentials/data-source.md)
-> or a deployment recipe that contains an open source Image Archive
+The configuration for our viewer is in the `<root>platform/viewer/public/config`
+directory. Our build process knows which configuration file to use based on the
+`APP_CONFIG` environment variable. By default, its value is
+[`config/default.js`][default-config]. The majority of the viewer's features,
+and registered extension's features, are configured using this file.
 
-#### How it Works
-
-The configuration for our project is in the `/public/config` directory. Our
-build process knows which configuration file to use based on the `APP_CONFIG`
-environment variable. By default, its value is
-[`default.js`](https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/config/default.js).
-When we build, the `%APP_CONFIG%` value in
-our[`/public/index.html`](https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/index.html)
-file is substituted for the correct configuration file's name. This sets
-the`window.config` equal to our configuration file's value.
-
-#### How do I configure my project?
-
-The simplest way is to update the existing default config:
-
-_/public/config/default.js_
-
-```js
-window.config = {
-  routerBasename: '/',
-  servers: {
-    dicomWeb: [
-      {
-        name: 'DCM4CHEE',
-        wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
-        qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
-        wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
-        qidoSupportsIncludeField: true,
-        imageRendering: 'wadors',
-        thumbnailRendering: 'wadors',
-        requestOptions: {
-          requestFromBrowser: true,
-        },
-      },
-    ],
-  },
-};
-```
-
-You can also create a new config file and specify its path relative to the build
-output's root by setting the `APP_CONFIG` environment variable. You can set the
-value of this environment variable a few different ways:
-
-- [Add a temporary environment variable in your shell](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-temporary-environment-variables-in-your-shell)
-- [Add environment specific variables in `.env` file(s)](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-development-environment-variables-in-env)
-- Using the `cross-env` package in an npm script:
-  - `"build": "cross-env APP_CONFIG=config/my-config.js react-scripts build"`
-
-After updating the configuration, `yarn run build:web` to generate updated build
-output.
+The easiest way to apply your own configuration is to modify the `default.js`
+file. For more advanced cofiguration options, check out our
+[configuration essentials guide](/essentials/configuration.md).
 
 ## Next Steps
 
@@ -141,7 +97,7 @@ _Advanced_
 ### Testing Build Output Locally
 
 A quick way to test your build output locally is to spin up a small webserver.
-You can do this by running the following commands in the `build/` output
+You can do this by running the following commands in the `dist/` output
 directory:
 
 ```js
@@ -162,8 +118,7 @@ web application. For a starting point, check out this repository's own use of:
 
 - [CircleCI][circleci]: [config.yaml][circleci-config]
 - [Netlify][netlify]: [netlify.toml][netlify.toml] |
-  [generateStaticSite.sh][generatestaticsite.sh]
-- [Semantic-Release][semantic-release]: [.releaserc][releaserc]
+  [build-deploy-preview.sh][build-deploy-preview.sh]
 
 ## Troubleshooting
 
@@ -173,10 +128,8 @@ web application. For a starting point, check out this repository's own use of:
 
 <!-- prettier-ignore-start -->
 [circleci]: https://circleci.com/gh/OHIF/Viewers
-[circleci-config]: https://github.com/OHIF/Viewers/blob/react/.circleci/config.yml
+[circleci-config]: https://github.com/OHIF/Viewers/blob/master/.circleci/config.yml
 [netlify]: https://app.netlify.com/sites/ohif/deploys
-[netlify.toml]: https://github.com/OHIF/Viewers/blob/react/netlify.toml
-[generateStaticSite.sh]: https://github.com/OHIF/Viewers/blob/react/generateStaticSite.sh
-[semantic-release]: https://semantic-release.gitbook.io/semantic-release/
-[releaserc]: https://github.com/OHIF/Viewers/blob/react/.releaserc
+[netlify.toml]: https://github.com/OHIF/Viewers/blob/master/netlify.toml
+[build-deploy-preview.sh]: https://github.com/OHIF/Viewers/blob/master/.netlify/build-deploy-preview.sh
 <!-- prettier-ignore-end -->

docs/latest/deployment/recipes/nginx--image-archive.md

@@ -121,11 +121,7 @@ likely want to update:
 
 #### OHIF Viewer
 
-The OHIF Viewer's configuration is imported from a static `.js` file and made
-available globally at `window.config`. The configuration we use is set to a
-specific file when we build the viewer, and determined by the env variable:
-`APP_CONFIG`. You can see where we set its value in the `dockerfile` for this
-solution:
+The OHIF Viewer's configuration is imported from a static `.js` file. The configuration we use is set to a specific file when we build the viewer, and determined by the env variable: `APP_CONFIG`. You can see where we set its value in the `dockerfile` for this solution:
 
 `ENV APP_CONFIG=config/docker_openresty-orthanc.js`
 

docs/latest/deployment/recipes/user-account-control.md

@@ -122,11 +122,7 @@ likely want to update:
 
 #### OHIF Viewer
 
-The OHIF Viewer's configuration is imported from a static `.js` file and made
-available globally at `window.config`. The configuration we use is set to a
-specific file when we build the viewer, and determined by the env variable:
-`APP_CONFIG`. You can see where we set its value in the `dockerfile` for this
-solution:
+The OHIF Viewer's configuration is imported from a static `.js` file. The configuration we use is set to a specific file when we build the viewer, and determined by the env variable: `APP_CONFIG`. You can see where we set its value in the `dockerfile` for this solution:
 
 `ENV APP_CONFIG=config/docker_openresty-orthanc-keycloak.js`
 

extensions/cornerstone/CHANGELOG.md

@@ -3,6 +3,22 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [1.0.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@0.50.5...@ohif/extension-cornerstone@1.0.0) (2019-09-09)
+
+
+### Features
+
+* 🎸 Upgraded to cornerstoneTools 4.0 ([86adb51](https://github.com/OHIF/Viewers/commit/86adb51))
+
+
+### BREAKING CHANGES
+
+* n
+
+
+
+
+
 ## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@0.50.4...@ohif/extension-cornerstone@0.50.5) (2019-09-06)
 
 **Note:** Version bump only for package @ohif/extension-cornerstone

extensions/cornerstone/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-cornerstone",
-  "version": "0.50.5",
+  "version": "1.0.0",
   "description": "OHIF extension for Cornerstone",
   "author": "OHIF",
   "license": "MIT",
@@ -32,9 +32,9 @@
     "@ohif/ui": "^0.50.0",
     "cornerstone-core": "^2.2.8",
     "cornerstone-math": "^0.1.8",
-    "cornerstone-tools": "^3.1.0",
+    "cornerstone-tools": "^4.0.1",
     "cornerstone-wado-image-loader": "^3.0.0",
-    "dcmjs": "^0.3.8",
+    "dcmjs": "^0.6.0",
     "dicom-parser": "^1.8.3",
     "hammerjs": "^2.0.8",
     "prop-types": "^15.6.2",

extensions/cornerstone/src/handleSegmentationStorage.js

@@ -1,8 +1,8 @@
-import * as dcmjs from "dcmjs";
+import * as dcmjs from 'dcmjs';
 
-import OHIF from "@ohif/core";
-import cornerstone from "cornerstone-core";
-import cornerstoneTools from "cornerstone-tools";
+import OHIF from '@ohif/core';
+import cornerstone from 'cornerstone-core';
+import cornerstoneTools from 'cornerstone-tools';
 
 const { StackManager } = OHIF.utils;
 
@@ -56,7 +56,7 @@ function retrieveDicomData(wadoUri) {
   // TODO: Authorization header depends on the server. If we ever have multiple servers
   // we will need to figure out how / when to pass this information in.
   return fetch(wadoUri, {
-    headers: OHIF.DICOMWeb.getAuthorizationHeader()
+    headers: OHIF.DICOMWeb.getAuthorizationHeader(),
   }).then(response => response.arrayBuffer());
 }
 
@@ -91,7 +91,7 @@ async function handleSegmentationStorage(
 
   if (displaySets.length > 1) {
     console.warn(
-      "More than one display set with the same seriesInstanceUid. This is not supported yet..."
+      'More than one display set with the same seriesInstanceUid. This is not supported yet...'
     );
   }
 
@@ -100,17 +100,19 @@ async function handleSegmentationStorage(
   const results = parseSeg(arrayBuffer, imageIds);
 
   if (!results) {
-    throw new Error("Fractional segmentations are not supported");
+    throw new Error('Fractional segmentations are not supported');
   }
 
-  const { segMetadata, toolState } = results;
+  const { labelmapBuffer, segMetadata, segmentsOnFrame } = results;
+  const { setters } = cornerstoneTools.getModule('segmentation');
 
-  segMetadata.seriesInstanceUid = seriesInstanceUid;
-
-  addSegMetadataToCornerstoneToolState(
+  setters.labelmap3DByFirstImageId(
+    imageIds[0],
+    labelmapBuffer,
+    0, // TODO -> Can define a color LUT based on colors in the SEG later.
     segMetadata,
-    toolState,
-    displaySetInstanceUid
+    imageIds.length,
+    segmentsOnFrame
   );
 
   const cachedStack = StackManager.findOrCreateStack(
@@ -123,7 +125,7 @@ async function handleSegmentationStorage(
   return {
     studyInstanceUid,
     displaySetInstanceUid,
-    stack
+    stack,
   };
 }
 

extensions/dicom-html/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.4...@ohif/extension-dicom-html@0.50.5) (2019-09-09)
+
+**Note:** Version bump only for package @ohif/extension-dicom-html
+
+
+
+
+
 ## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.3...@ohif/extension-dicom-html@0.50.4) (2019-09-06)
 
 

extensions/dicom-html/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-html",
-  "version": "0.50.4",
+  "version": "0.50.5",
   "description": "OHIF extension for rendering structured reports to HTML",
   "author": "OHIF",
   "license": "MIT",
@@ -29,7 +29,7 @@
   },
   "peerDependencies": {
     "@ohif/core": "^0.50.0",
-    "dcmjs": "^0.3.3",
+    "dcmjs": "^0.6.0",
     "prop-types": "^15.6.2",
     "react": "^15.0.0 || ^16.0.0",
     "react-dom": "^15.0.0 || ^16.0.0"

extensions/vtk/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.50.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.7...@ohif/extension-vtk@0.50.8) (2019-09-09)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
 ## [0.50.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.6...@ohif/extension-vtk@0.50.7) (2019-09-06)
 
 **Note:** Version bump only for package @ohif/extension-vtk

extensions/vtk/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-vtk",
-  "version": "0.50.7",
+  "version": "0.50.8",
   "description": "OHIF extension for VTK.js",
   "author": "OHIF",
   "license": "MIT",
@@ -34,7 +34,7 @@
     "@ohif/ui": "^0.50.0",
     "cornerstone-core": "^2.2.8",
     "cornerstone-wado-image-loader": "^3.0.0",
-    "dcmjs": "^0.4.7",
+    "dcmjs": "^0.6.0",
     "dicom-parser": "^1.8.3",
     "i18next": "^17.0.3",
     "i18next-browser-languagedetector": "^3.0.1",
@@ -51,11 +51,11 @@
     "react-vtkjs-viewport": "0.0.11"
   },
   "devDependencies": {
-    "@ohif/core": "^0.50.5",
+    "@ohif/core": "^0.50.6",
     "@ohif/ui": "^0.50.4",
-    "cornerstone-tools": "^3.13.0",
+    "cornerstone-tools": "^4.0.0",
     "cornerstone-wado-image-loader": "^3.0.0",
-    "dcmjs": "^0.5.1",
+    "dcmjs": "^0.6.0",
     "dicom-parser": "^1.8.3",
     "gh-pages": "^2.0.1",
     "i18next": "^17.0.3",

netlify.toml

@@ -3,7 +3,7 @@
 # TOML Reference:
 # https://www.netlify.com/docs/netlify-toml-reference/
 #
-# We use Netlify for deploy previews and deploy previews only.
+# We use Netlify for deploy previews and for publishing docs (gh-pages branch).
 # https://viewer.ohif.org is created using a different process that is
 # managed by CircleCI and deployed to our Google Hosting
 #
@@ -40,25 +40,6 @@
   publish = ".netlify/www/"
   command = "yarn config set workspaces-experimental true && chmod +x .netlify/build-deploy-preview.sh && .netlify/build-deploy-preview.sh"
 
-# Redirects and headers are GLOBAL for all builds – they do not get scoped to
-# contexts no matter where you define them in the file.
-# For context-specific rules, use _headers or _redirects files, which are
-# PER-DEPLOY.
-# The following redirect is intended for use with most SPAs that handle
-# routing internally.
-# By default, redirects won't be applied if there's a file with the same
-# path as the one defined in the `from` property. Setting `force` to `true`
-# will make the redirect rule take precedence over any existing files.
-[[redirects]]
-  from = "/*"
-  to = "/index.html"
-  status = 200
-
-[[redirects]]
-  from = "/pwa/*"
-  to = "/pwa/index.html"
-  status = 200
-
 [[headers]]
   # Define which paths this specific [[headers]] block will cover.
   for = "/*"

package.json

@@ -28,7 +28,8 @@
     "docs:publish": "chmod +x ./build-and-publish-docs.sh && ./build-and-publish-docs.sh",
     "release": "yarn run lerna:version && yarn run lerna:publish",
     "lerna:version": "npx lerna version prerelease --force-publish",
-    "lerna:publish": "lerna publish from-package --canary --dist-tag canary"
+    "lerna:publish": "lerna publish from-package --canary --dist-tag canary",
+    "link-list": "npm ls --depth=0 --link=true"
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",

platform/core/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.50.6](https://github.com/OHIF/Viewers/compare/@ohif/core@0.50.5...@ohif/core@0.50.6) (2019-09-09)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
 ## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/core@0.50.4...@ohif/core@0.50.5) (2019-09-04)
 
 **Note:** Version bump only for package @ohif/core

platform/core/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/core",
-  "version": "0.50.5",
+  "version": "0.50.6",
   "description": "Generic business logic for web-based medical imaging applications",
   "author": "OHIF Core Team",
   "license": "MIT",
@@ -32,7 +32,7 @@
   },
   "peerDependencies": {
     "cornerstone-core": "^2.2.8",
-    "cornerstone-tools": "^3.9.0",
+    "cornerstone-tools": "^4.0.0",
     "cornerstone-wado-image-loader": "^3.0.0",
     "dicom-parser": "^1.8.3"
   },

platform/viewer/CHANGELOG.md

@@ -3,6 +3,41 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.0.1](https://github.com/OHIF/Viewers/compare/@ohif/viewer@1.0.0...@ohif/viewer@1.0.1) (2019-09-09)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+# [1.0.0](https://github.com/OHIF/Viewers/compare/@ohif/viewer@0.50.21...@ohif/viewer@1.0.0) (2019-09-06)
+
+
+### Code Refactoring
+
+* 💡 React components to consume appConfig using Context ([#852](https://github.com/OHIF/Viewers/issues/852)) ([7c4ee73](https://github.com/OHIF/Viewers/commit/7c4ee73)), closes [#725](https://github.com/OHIF/Viewers/issues/725) [#725](https://github.com/OHIF/Viewers/issues/725)
+
+
+### BREAKING CHANGES
+
+* #725
+
+
+
+
+
+## [0.50.21](https://github.com/OHIF/Viewers/compare/@ohif/viewer@0.50.20...@ohif/viewer@0.50.21) (2019-09-06)
+
+
+### Bug Fixes
+
+* viewer project should build output before publish ([94b625d](https://github.com/OHIF/Viewers/commit/94b625d))
+
+
+
+
+
 ## [0.50.20](https://github.com/OHIF/Viewers/compare/@ohif/viewer@0.50.19...@ohif/viewer@0.50.20) (2019-09-06)
 
 **Note:** Version bump only for package @ohif/viewer

platform/viewer/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/viewer",
-  "version": "0.50.20",
+  "version": "1.0.1",
   "description": "OHIF Viewer",
   "author": "OHIF Contributors",
   "license": "MIT",
@@ -28,7 +28,8 @@
     "start": "yarn run dev",
     "test:e2e": "cypress open",
     "test:unit": "jest --watchAll",
-    "test:unit:ci": "jest --ci --runInBand --collectCoverage"
+    "test:unit:ci": "jest --ci --runInBand --collectCoverage",
+    "prepublishOnly": "yarn run build:package"
   },
   "files": [
     "dist",
@@ -40,12 +41,12 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",
-    "@ohif/core": "^0.50.5",
-    "@ohif/extension-cornerstone": "^0.50.5",
-    "@ohif/extension-dicom-html": "^0.50.4",
+    "@ohif/core": "^0.50.6",
+    "@ohif/extension-cornerstone": "^1.0.0",
+    "@ohif/extension-dicom-html": "^0.50.5",
     "@ohif/extension-dicom-microscopy": "^0.50.4",
     "@ohif/extension-dicom-pdf": "^0.50.3",
-    "@ohif/extension-vtk": "^0.50.7",
+    "@ohif/extension-vtk": "^0.50.8",
     "@ohif/i18n": "^0.50.3",
     "@ohif/ui": "^0.50.4",
     "@tanem/react-nprogress": "^1.1.25",
@@ -53,9 +54,9 @@
     "core-js": "^3.2.1",
     "cornerstone-core": "^2.2.8",
     "cornerstone-math": "^0.1.8",
-    "cornerstone-tools": "^3.19.2",
+    "cornerstone-tools": "^4.0.0",
     "cornerstone-wado-image-loader": "^3.0.0",
-    "dcmjs": "^0.4.7",
+    "dcmjs": "^0.6.0",
     "dicom-parser": "^1.8.3",
     "dicomweb-client": "^0.4.4",
     "hammerjs": "^2.0.8",

platform/viewer/src/App.js

@@ -25,12 +25,15 @@ import { OidcProvider } from 'redux-oidc';
 import PropTypes from 'prop-types';
 import { Provider } from 'react-redux';
 import { BrowserRouter as Router } from 'react-router-dom';
-import WhiteLabellingContext from './WhiteLabellingContext';
 import { getActiveContexts } from './store/layout/selectors.js';
 import i18n from '@ohif/i18n';
 import setupTools from './setupTools.js';
 import store from './store';
-import UserManagerContext from './UserManagerContext';
+
+// Contexts
+import WhiteLabellingContext from './context/WhiteLabellingContext';
+import UserManagerContext from './context/UserManagerContext';
+import AppContext from './context/AppContext';
 
 // ~~~~ APP SETUP
 initCornerstoneTools({
@@ -74,10 +77,66 @@ class App extends Component {
     extensions: [],
   };
 
+  _appConfig;
+  _userManager;
+
   constructor(props) {
     super(props);
 
-    if (this.props.oidc.length) {
+    this.appConfig = props;
+    const { servers, extensions, hotkeys, oidc } = props;
+
+    this.initUserManager(oidc);
+    _initExtensions(extensions, hotkeys);
+    _initServers(servers);
+    initWebWorkers();
+  }
+
+  render() {
+    const userManager = this._userManager;
+    const config = {
+      appConfig: this._appConfig,
+    };
+
+    if (userManager) {
+      return (
+        <AppContext.Provider value={config}>
+          <Provider store={store}>
+            <I18nextProvider i18n={i18n}>
+              <OidcProvider store={store} userManager={userManager}>
+                <UserManagerContext.Provider value={userManager}>
+                  <Router basename={this.props.routerBasename}>
+                    <WhiteLabellingContext.Provider
+                      value={this.props.whiteLabelling}
+                    >
+                      <OHIFStandaloneViewer userManager={userManager} />
+                    </WhiteLabellingContext.Provider>
+                  </Router>
+                </UserManagerContext.Provider>
+              </OidcProvider>
+            </I18nextProvider>
+          </Provider>
+        </AppContext.Provider>
+      );
+    }
+
+    return (
+      <AppContext.Provider value={config}>
+        <Provider store={store}>
+          <I18nextProvider i18n={i18n}>
+            <Router basename={this.props.routerBasename}>
+              <WhiteLabellingContext.Provider value={this.props.whiteLabelling}>
+                <OHIFStandaloneViewer />
+              </WhiteLabellingContext.Provider>
+            </Router>
+          </I18nextProvider>
+        </Provider>
+      </AppContext.Provider>
+    );
+  }
+
+  initUserManager(oidc) {
+    if (oidc && !!oidc.length) {
       const firstOpenIdClient = this.props.oidc[0];
 
       const { protocol, host } = window.location;
@@ -102,58 +161,18 @@ class App extends Component {
         ),
       });
 
-      this.userManager = getUserManagerForOpenIdConnectClient(
+      this._userManager = getUserManagerForOpenIdConnectClient(
         store,
         openIdConnectConfiguration
       );
     }
-
-    _initExtensions(this.props.extensions);
-    _initServers(this.props.servers);
-    initWebWorkers();
-  }
-
-  render() {
-    const userManager = this.userManager;
-
-    if (userManager) {
-      return (
-        <Provider store={store}>
-          <I18nextProvider i18n={i18n}>
-            <OidcProvider store={store} userManager={userManager}>
-              <UserManagerContext.Provider value={userManager}>
-                <Router basename={this.props.routerBasename}>
-                  <WhiteLabellingContext.Provider
-                    value={this.props.whiteLabelling}
-                  >
-                    <OHIFStandaloneViewer userManager={userManager} />
-                  </WhiteLabellingContext.Provider>
-                </Router>
-              </UserManagerContext.Provider>
-            </OidcProvider>
-          </I18nextProvider>
-        </Provider>
-      );
-    }
-
-    return (
-      <Provider store={store}>
-        <I18nextProvider i18n={i18n}>
-          <Router basename={this.props.routerBasename}>
-            <WhiteLabellingContext.Provider value={this.props.whiteLabelling}>
-              <OHIFStandaloneViewer />
-            </WhiteLabellingContext.Provider>
-          </Router>
-        </I18nextProvider>
-      </Provider>
-    );
   }
 }
 
 /**
  * @param
  */
-function _initExtensions(extensions) {
+function _initExtensions(extensions, hotkeys) {
   const defaultExtensions = [
     GenericViewerCommands,
     MeasurementsPanel,
@@ -163,8 +182,8 @@ function _initExtensions(extensions) {
   extensionManager.registerExtensions(mergedExtensions);
 
   // Must run after extension commands are registered
-  if (window.config.hotkeys) {
-    hotkeysManager.setHotkeys(window.config.hotkeys, true);
+  if (hotkeys) {
+    hotkeysManager.setHotkeys(hotkeys, true);
   }
 }
 

platform/viewer/src/OHIFStandaloneViewer.js

@@ -20,6 +20,9 @@ import './OHIFStandaloneViewer.css';
 import './variables.css';
 import './theme-tide.css';
 
+// Contexts
+import AppContext from './context/AppContext';
+
 // Dynamic Import Routes (CodeSplitting)
 // const IHEInvokeImageDisplay = asyncComponent(() =>
 //   import('./routes/IHEInvokeImageDisplay.js')
@@ -37,6 +40,7 @@ import './theme-tide.css';
 const reload = () => window.location.reload();
 
 class OHIFStandaloneViewer extends Component {
+  static contextType = AppContext;
   state = {
     isLoading: false,
   };
@@ -63,7 +67,7 @@ class OHIFStandaloneViewer extends Component {
 
   render() {
     const { user, userManager } = this.props;
-
+    const { appConfig = {} } = this.context;
     const userNotLoggedIn = userManager && (!user || user.expired);
     if (userNotLoggedIn) {
       const pathname = this.props.location.pathname;
@@ -140,9 +144,7 @@ class OHIFStandaloneViewer extends Component {
     ];
 
     const showStudyList =
-      window.config && window.config.showStudyList !== undefined
-        ? window.config.showStudyList
-        : true;
+      appConfig.showStudyList !== undefined ? appConfig.showStudyList : true;
     if (showStudyList) {
       routes.push({
         path: '/studylist',

platform/viewer/src/components/Header/Header.js

@@ -11,13 +11,17 @@ import { AboutModal } from '@ohif/ui';
 import { hotkeysManager } from './../../App.js';
 import { withTranslation } from 'react-i18next';
 
+// Context
+import AppContext from './../../context/AppContext';
+
 class Header extends Component {
+  static contextType = AppContext;
   static propTypes = {
     home: PropTypes.bool.isRequired,
     location: PropTypes.object.isRequired,
     children: PropTypes.node,
     t: PropTypes.func.isRequired,
-    userManager: PropTypes.object
+    userManager: PropTypes.object,
   };
 
   static defaultProps = {
@@ -63,10 +67,10 @@ class Header extends Component {
     if (this.props.user && this.props.userManager) {
       this.options.push({
         title: t('Logout'),
-          icon: { name: 'power-off' },
-          onClick: () => {
-            this.props.userManager.signoutRedirect();
-          },
+        icon: { name: 'power-off' },
+        onClick: () => {
+          this.props.userManager.signoutRedirect();
+        },
       });
     }
 
@@ -82,10 +86,9 @@ class Header extends Component {
 
   render() {
     const { t } = this.props;
+    const { appConfig = {} } = this.context;
     const showStudyList =
-      window.config.showStudyList !== undefined
-        ? window.config.showStudyList
-        : true;
+      appConfig.showStudyList !== undefined ? appConfig.showStudyList : true;
     return (
       <div className={`entry-header ${this.props.home ? 'header-big' : ''}`}>
         <div className="header-left-box">

platform/viewer/src/connectedComponents/Viewer.js

@@ -5,7 +5,6 @@ import classNames from 'classnames';
 import { MODULE_TYPES } from '@ohif/core';
 import OHIF from '@ohif/core';
 import moment from 'moment';
-import WhiteLabellingContext from '../WhiteLabellingContext.js';
 import ConnectedHeader from './ConnectedHeader.js';
 import ConnectedToolbarRow from './ConnectedToolbarRow.js';
 import ConnectedLabellingOverlay from './ConnectedLabellingOverlay';
@@ -13,7 +12,11 @@ import ConnectedStudyBrowser from './ConnectedStudyBrowser.js';
 import ConnectedViewerMain from './ConnectedViewerMain.js';
 import SidePanel from './../components/SidePanel.js';
 import { extensionManager } from './../App.js';
-import UserManagerContext from '../UserManagerContext';
+
+// Contexts
+import WhiteLabellingContext from '../context/WhiteLabellingContext.js';
+import UserManagerContext from '../context/UserManagerContext';
+
 import './Viewer.css';
 /**
  * Inits OHIF Hanging Protocol's onReady.

platform/viewer/src/context/AppContext.js

@@ -0,0 +1,5 @@
+import React from 'react';
+
+let AppContext = React.createContext({});
+
+export default AppContext;

platform/viewer/src/context/WhiteLabellingContext.js

@@ -1,4 +1,4 @@
-import OHIFLogo from './components/OHIFLogo/OHIFLogo.js';
+import OHIFLogo from '../components/OHIFLogo/OHIFLogo.js';
 import React from 'react';
 
 const defaultContextValues = {

platform/viewer/src/setupTools.js

@@ -177,7 +177,7 @@ export default function setupTools(store) {
     { name: 'StackScroll', mouseButtonMasks: [1] },
     { name: 'Brush', mouseButtonMasks: [1] },
     {
-      name: 'FreehandMouse',
+      name: 'FreehandRoi',
       props: {
         configuration: {
           getMeasurementLocationCallback: toolLabellingFlowCallback,

platform/viewer/src/studylist/StudyListRouting.js

@@ -1,9 +1,12 @@
-import React from 'react';
+import React, { useContext } from 'react';
 import PropTypes from 'prop-types';
 import { withRouter } from 'react-router-dom';
 import queryString from 'query-string';
 import ConnectedStudyList from './ConnectedStudyList';
 
+// Contexts
+import AppContext from '../context/AppContext';
+
 // TODO: Move to @ohif/ui
 
 function toLowerCaseFirstLetter(word) {
@@ -22,16 +25,20 @@ function getFilters({ search }) {
 }
 
 function StudyListRouting({ location }) {
+  const { appConfig = {} } = useContext(AppContext);
+
   const filters = location ? getFilters(location) : undefined;
 
   let studyListFunctionsEnabled = false;
-  if (window.config && window.config.studyListFunctionsEnabled) {
-    studyListFunctionsEnabled = window.config.studyListFunctionsEnabled;
+  if (appConfig.studyListFunctionsEnabled) {
+    studyListFunctionsEnabled = appConfig.studyListFunctionsEnabled;
   }
-  return <ConnectedStudyList
-    filters={filters}
-    studyListFunctionsEnabled={studyListFunctionsEnabled}
-  />;
+  return (
+    <ConnectedStudyList
+      filters={filters}
+      studyListFunctionsEnabled={studyListFunctionsEnabled}
+    />
+  );
 }
 
 StudyListRouting.propTypes = {

platform/viewer/src/studylist/StudyListWithData.js

@@ -10,10 +10,14 @@ import moment from 'moment';
 import ConnectedDicomFilesUploader from '../googleCloud/ConnectedDicomFilesUploader';
 import ConnectedDicomStorePicker from '../googleCloud/ConnectedDicomStorePicker';
 import filesToStudies from '../lib/filesToStudies.js';
-import UserManagerContext from '../UserManagerContext';
-import WhiteLabellingContext from '../WhiteLabellingContext';
+
+// Contexts
+import UserManagerContext from '../context/UserManagerContext';
+import WhiteLabellingContext from '../context/WhiteLabellingContext';
+import AppContext from '../context/AppContext';
 
 class StudyListWithData extends Component {
+  static contextType = AppContext;
   state = {
     searchData: {},
     studies: [],
@@ -51,9 +55,10 @@ class StudyListWithData extends Component {
   };
 
   componentDidMount() {
+    const { appConfig = {} } = this.context;
     // TODO: Avoid using timepoints here
     //const params = { studyInstanceUids, seriesInstanceUids, timepointId, timepointsFilter={} };
-    if (!this.props.server && window.config.enableGoogleCloudAdapter) {
+    if (!this.props.server && appConfig.enableGoogleCloudAdapter) {
       this.setState({
         modalComponentId: 'DicomStorePicker',
       });
@@ -184,6 +189,7 @@ class StudyListWithData extends Component {
   };
 
   render() {
+    const { appConfig = {} } = this.context;
     const onDrop = async acceptedFiles => {
       try {
         const studies = await filesToStudies(acceptedFiles);
@@ -203,8 +209,7 @@ class StudyListWithData extends Component {
     let healthCareApiButtons = null;
     let healthCareApiWindows = null;
 
-    // TODO: This should probably be a prop
-    if (window.config.enableGoogleCloudAdapter) {
+    if (appConfig.enableGoogleCloudAdapter) {
       healthCareApiWindows = (
         <ConnectedDicomStorePicker
           isOpen={this.state.modalComponentId === 'DicomStorePicker'}