chore(release): publish [skip ci]

- @ohif/extension-vtk@0.51.2
 - @ohif/core@1.0.2
 - @ohif/viewer@1.3.3

.circleci/config.yml

@@ -9,9 +9,11 @@ version: 2.1
 # create pull request previews and to update `https://docs.ohif.org`
 ###
 
+## https://github.com/cypress-io/circleci-orb
+##
 orbs:
   codecov: codecov/codecov@1.0.5
-  cypress: cypress-io/cypress@1.8.0
+  cypress: cypress-io/cypress@1.10.0
 
 defaults: &defaults
   docker:
@@ -21,13 +23,11 @@ defaults: &defaults
   working_directory: ~/repo
 
 jobs:
-  PR_UNIT_TESTS:
+  CHECKOUT:
     <<: *defaults
-
     steps:
       # Enable yarn workspaces
       - run: yarn config set workspaces-experimental true
-
       # Checkout code and ALL Git Tags
       - checkout:
           post:
@@ -47,6 +47,16 @@ jobs:
           paths:
             - ~/.cache ## Cache yarn and Cypress
           key: yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
+      # Persist :+1:
+      - persist_to_workspace:
+          root: ~/repo
+          paths: .
+
+  UNIT_TESTS:
+    <<: *defaults
+    steps:
+      - attach_workspace:
+          at: ~/repo
 
       # RUN TESTS
       - run:
@@ -86,72 +96,7 @@ jobs:
           root: ~/repo
           paths: .
 
-  MERGE_UNIT_TESTS:
-    <<: *defaults
-
-    steps:
-      # Enable yarn workspaces
-      - run: yarn config set workspaces-experimental true
-
-      # Checkout code and ALL Git Tags
-      - checkout:
-          post:
-            - git fetch --all
-      - restore_cache:
-          name: Restore Yarn and Cypress Package Cache
-          keys:
-            # when lock file changes, use increasingly general patterns to restore cache
-            - yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
-            - yarn-packages-v1-{{ .Branch }}-
-            - yarn-packages-v1-
-      - run:
-          name: Install Dependencies
-          command: yarn install --frozen-lockfile
-      - save_cache:
-          name: Save Yarn Package Cache
-          paths:
-            - ~/.cache ## Cache yarn and Cypress
-          key: yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}
-
-      # RUN TESTS
-      - run:
-          name: 'JavaScript Test Suite'
-          command: yarn run test:unit:ci
-
-      # PLATFORM/VIEWER
-      - run:
-          name: 'VIEWER: Combine report output'
-          command: |
-            viewerCov="/home/circleci/repo/platform/viewer/coverage"
-            touch "${viewerCov}/reports"
-            cat "${viewerCov}/clover.xml" >> "${viewerCov}/reports"
-            echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
-            cat "${viewerCov}/lcov.info" >>"${viewerCov}/reports"
-            echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
-      - codecov/upload:
-          file: '/home/circleci/repo/platform/viewer/coverage/reports'
-          flags: 'viewer'
-
-      # PLATFORM/CORE
-      - run:
-          name: 'CORE: Combine report output'
-          command: |
-            coreCov="/home/circleci/repo/platform/core/coverage"
-            touch "${coreCov}/reports"
-            cat "${coreCov}/clover.xml" >> "${coreCov}/reports"
-            echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
-            cat "${coreCov}/lcov.info" >> "${coreCov}/reports"
-            echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
-      - codecov/upload:
-          file: '/home/circleci/repo/platform/core/coverage/reports'
-          flags: 'core'
-
-      # Persist :+1:
-      - persist_to_workspace:
-          root: ~/repo
-          paths: .
-
-  npm_publish:
+  NPM_PUBLISH:
     <<: *defaults
     steps:
       - attach_workspace:
@@ -175,7 +120,7 @@ jobs:
           root: ~/repo
           paths: .
 
-  docs_publish:
+  DOCS_PUBLISH:
     <<: *defaults
     steps:
       - attach_workspace:
@@ -192,7 +137,7 @@ jobs:
       - run: chmod +x ~/repo/.circleci/build-and-publish-docs.sh
       - run: ~/repo/.circleci/build-and-publish-docs.sh
 
-  docker_publish:
+  DOCKER_PUBLISH:
     <<: *defaults
     steps:
       - attach_workspace:
@@ -204,13 +149,13 @@ jobs:
           command: |
             # This file will exist if a new version was published by
             # our `semantic-release` command in the previous job
-            if [[ ! -e tmp/updated-version.txt ]]; then
+            if [[ ! -e platform/viewer/success_version.txt ]]; then
               exit 0
             else
               # Remove npm config
               rm -f ./.npmrc
               # Set our version number using vars
-              export IMAGE_VERSION=$(cat tmp/updated-version.txt)
+              export IMAGE_VERSION=$(cat platform/viewer/success_version.txt)
               export IMAGE_VERSION_FULL=v$IMAGE_VERSION.${CIRCLE_BUILD_NUM}
               echo $IMAGE_VERSION
               echo $IMAGE_VERSION_FULL
@@ -221,16 +166,19 @@ jobs:
               docker push ohif/$IMAGE_NAME:latest
             fi
 
-  viewer_demo_build:
+  VIEWER_DEMO_BUILD:
     <<: *defaults
     steps:
       - attach_workspace:
           at: ~/repo
       # Build & Test
       - run:
-          name: 'Build Demo Site, Upload SourceMaps, Send Deploy Notification'
+          name: 'Build Demo Site'
+          command: yarn run build:demo
+          no_output_timeout: 45m
+      - run:
+          name: 'Upload SourceMaps, Send Deploy Notification'
           command: |
-            npx lerna run build:viewer:demo --stream
             # export FILE_1=$(find ./build/static/js -type f -name "2.*.js" -exec basename {} \;)
             # export FILE_MAIN=$(find ./build/static/js -type f -name "main.*.js" -exec basename {} \;)
             # export FILE_RUNTIME_MAIN=$(find ./build/static/js -type f -name "runtime~main.*.js" -exec basename {} \;)
@@ -243,7 +191,7 @@ jobs:
           root: ~/repo
           paths: .
 
-  viewer_demo_publish:
+  VIEWER_DEMO_PUBLISH:
     working_directory: ~/repo
     docker:
       - image: google/cloud-sdk
@@ -269,71 +217,127 @@ workflows:
   # PULL REQUESTS
   PR_CHECKS:
     jobs:
-      - PR_UNIT_TESTS:
+      - CHECKOUT:
           filters:
             branches:
               ignore:
                 - master
                 - feature/*
                 - hotfix/*
-      # Cypress job added by `cypress-io` orb
+      - UNIT_TESTS:
+          requires:
+            - CHECKOUT
+      # E2E: PWA
       - cypress/run:
+          name: 'E2E: PWA'
           pre-steps:
             - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
                 add wait-on' # Use yarn latest
           yarn: true
-          store_artifacts: true
-          start: yarn run dev
-          wait-on: 'http://localhost:3000'
-          no-workspace: true # Don't persist workspace
+          store_artifacts: false
           working_directory: platform/viewer
+          build: yarn run build:e2e
+          start: yarn run test:e2e:dist
+          wait-on: 'http://localhost:3000'
           cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
+          no-workspace: true # Don't persist workspace
           post-steps:
-            - store_test_results:
-                path: cypress/results
+            - store_artifacts:
+                path: platform/viewer/cypress/screenshots
           requires:
-            - PR_UNIT_TESTS
+            - UNIT_TESTS
+      # E2E: script-tag
+      - cypress/run:
+          name: 'E2E: Script Tag'
+          pre-steps:
+            - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
+                add wait-on' # Use yarn latest
+          yarn: true
+          store_artifacts: false
+          working_directory: platform/viewer
+          build: yarn run build:package
+          start: yarn run test:e2e:dist
+          wait-on: 'http://localhost:3000'
+          cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
+          no-workspace: true # Don't persist workspace
+          post-steps:
+            - store_artifacts:
+                path: platform/viewer/cypress/screenshots
+          requires:
+            - UNIT_TESTS
 
   # MERGE TO MASTER
   RELEASE:
     jobs:
-      - MERGE_UNIT_TESTS:
+      - CHECKOUT:
           filters:
             branches:
               only: master
-      # Cypress job added by `cypress-io` orb
+      - UNIT_TESTS:
+          requires:
+            - CHECKOUT
+      # E2E: PWA + Persist
       - cypress/run:
+          name: 'E2E: PWA'
           pre-steps:
             - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
                 add wait-on' # Use yarn latest
           yarn: true
           record: true
           store_artifacts: true
-          start: yarn run dev
-          wait-on: 'http://localhost:3000'
           working_directory: platform/viewer
+          build: yarn run build:e2e
+          start: yarn run test:e2e:dist
+          wait-on: 'http://localhost:3000'
           cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
+          no-workspace: true # Don't persist workspace
           post-steps:
+            - store_artifacts:
+                path: platform/viewer/cypress/screenshots
             - store_test_results:
                 path: cypress/results
           requires:
-            - MERGE_UNIT_TESTS
+            - UNIT_TESTS
+      # E2E: script-tag
+      - cypress/run:
+          name: 'E2E: Script Tag'
+          pre-steps:
+            - run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
+                add wait-on' # Use yarn latest
+          yarn: true
+          store_artifacts: false
+          working_directory: platform/viewer
+          build: yarn run build:package
+          start: yarn run test:e2e:dist
+          wait-on: 'http://localhost:3000'
+          cache-key: 'yarn-packages-v1-{{ .Branch }}-{{ checksum "yarn.lock" }}'
+          no-workspace: true # Don't persist workspace
+          post-steps:
+            - store_artifacts:
+                path: platform/viewer/cypress/screenshots
+            - store_test_results:
+                path: cypress/results
+          requires:
+            - UNIT_TESTS
       # Update NPM
-      - npm_publish:
+      - NPM_PUBLISH:
           requires:
-            - cypress/run
+            - 'E2E: Script Tag'
+            - 'E2E: PWA'
       # Update docs.ohif.org
-      - docs_publish:
+      - DOCS_PUBLISH:
           requires:
-            - cypress/run
-      # Update hub.docker.org
-      # - docker_publish:
-      #     requires:
-      #       - npm_publish
+            - 'E2E: Script Tag'
+            - 'E2E: PWA'
+      - VIEWER_DEMO_BUILD:
+          requires:
+            - 'E2E: Script Tag'
+            - 'E2E: PWA'
       # Update viewer.ohif.org
-      - viewer_demo_build:
+      - VIEWER_DEMO_PUBLISH:
           requires:
-            - cypress/run
-      - viewer_demo_publish:
+            - VIEWER_DEMO_BUILD
+      # Update hub.docker.org
+      - DOCKER_PUBLISH:
           requires:
-            - viewer_demo_build
+            - NPM_PUBLISH

.codecov.yml

@@ -8,11 +8,13 @@ coverage:
   status:
     project:
       default:
-        threshold: 0.10%
+        threshold: 0.5%
       core:
         flags: core
+        threshold: 0.5%
       viewer:
         flags: viewer
+        threshold: 0.5%
     patch: off
 flags:
   core:

.docker/Viewer-v2.x/default.conf

@@ -0,0 +1,12 @@
+server {
+  listen 80;
+  location / {
+    root   /usr/share/nginx/html;
+    index  index.html index.htm;
+    try_files $uri $uri/ /index.html;
+  }
+  error_page   500 502 503 504  /50x.html;
+  location = /50x.html {
+    root   /usr/share/nginx/html;
+  }
+}

.docker/Viewer-v2.x/entrypoint.sh

@@ -0,0 +1,19 @@
+#!/bin/bash
+
+# If CLIENT_ID is specified, use the google.js configuration with the modified ID
+if [ ! -z "$CLIENT_ID" ]
+  then
+  	echo "Google Cloud Healthcare $CLIENT_ID has been provided: "
+  	echo $CLIENT_ID
+  	echo "Updating config..."
+
+  	# - Use SED to replace the CLIENT_ID that is currently in google.js
+	sed -i -e "s/YOURCLIENTID.apps.googleusercontent.com/$CLIENT_ID/g" /usr/share/nginx/html/google.js
+
+	# - Copy google.js to overwrite app-config.js
+	cp /usr/share/nginx/html/google.js /usr/share/nginx/html/app-config.js
+fi
+
+echo "Starting Nginx to serve the OHIF Viewer..."
+
+exec "$@"

.dockerignore

@@ -0,0 +1,30 @@
+# Reduces size of context and hides
+# files from Docker (can't COPY or ADD these)
+
+# Output
+dist/
+build/
+
+# Dependencies
+node_modules/
+
+# Root
+README.md
+Dockerfile
+dockerfile
+
+# Misc. Config
+.git
+.DS_Store
+.gitignore
+.vscode
+.circleci
+
+# Unnecessary things to pull into container
+.circleci/
+.github/
+.netlify/
+.scripts/
+.vscode/
+coverage/
+docs/

.github/stale.yml

@@ -7,13 +7,13 @@ daysUntilStale: 21
 daysUntilClose: 7
 # Issues with these labels will never be considered stale
 exemptLabels:
-  - 'Story 🙌'
-  - 'Bug: Verified 🐛'
+  - 'Story :raised_hands:'
+  - 'Bug: Verified :bug:'
   - 'Task: CI/Tooling 🤖'
   - 'Task: Docs 📖'
   - 'Task: Docs :book:'
   - 'Task: Refactor 🛠'
-  - 'Task: Tests 🔬'
+  - 'Task: Tests :microscope:'
   - 'PR: Awaiting Review 👀'
   - 'Triage 🏳️'
   - 'Announcement 🎉'

.gitignore

@@ -28,7 +28,7 @@ example/deps/
 docker/dcm4che/dcm4che-arc
 
 # Cypress test results
-cypress/videos/
+videos/
 
 # Locize settings
-.locize
+.locize

.netlify/www/_redirects

@@ -0,0 +1,6 @@
+# Specific to our deploy-preview
+# Our docs are published using CircleCI + GitBook
+# Confgure redirects using netlify.toml
+
+# PWA Demo
+/pwa/* /pwa/index.html 200

.webpack/webpack.commonjs.js

@@ -1,3 +1,4 @@
+const merge = require('webpack-merge');
 const webpackBase = require('./webpack.base.js');
 const cssToJavaScriptRule = require('./rules/cssToJavaScript.js');
 const stylusToJavaScriptRule = require('./rules/stylusToJavaScript.js');

Dockerfile

@@ -0,0 +1,64 @@
+# This dockerfile is used to publish the `ohif/viewer` image on dockerhub.
+#
+# It's a good example of how to build our static application and package it
+# with a web server capable of hosting it as static content.
+#
+# docker build
+# --------------
+# If you would like to use this dockerfile to build and tag an image, make sure
+# you set the context to the project's root directory:
+# https://docs.docker.com/engine/reference/commandline/build/
+#
+#
+# SUMMARY
+# --------------
+# This dockerfile has two stages:
+#
+# 1. Building the React application for production
+# 2. Setting up our Nginx (Alpine Linux) image w/ step one's output
+#
+
+
+# Stage 1: Build the application
+# docker build -t ohif/viewer:latest .
+FROM node:10.16.3-slim as builder
+
+RUN mkdir /usr/src/app
+WORKDIR /usr/src/app
+
+# Copy Files
+COPY .docker /usr/src/app/.docker
+COPY .webpack /usr/src/app/.webpack
+COPY extensions /usr/src/app/extensions
+COPY platform /usr/src/app/platform
+COPY .browserslistrc /usr/src/app/.browserslistrc
+COPY aliases.config.js /usr/src/app/aliases.config.js
+COPY babel.config.js /usr/src/app/babel.config.js
+COPY lerna.json /usr/src/app/lerna.json
+COPY package.json /usr/src/app/package.json
+COPY postcss.config.js /usr/src/app/postcss.config.js
+COPY yarn.lock /usr/src/app/yarn.lock
+
+# Run the install before copying the rest of the files
+RUN yarn config set workspaces-experimental true
+RUN yarn install
+
+ENV PATH /usr/src/app/node_modules/.bin:$PATH
+# ENV GENERATE_SOURCEMAP=false
+# ENV REACT_APP_CONFIG=config/default.js
+
+RUN yarn run build
+
+# Stage 2: Bundle the built application into a Docker container
+# which runs Nginx using Alpine Linux
+FROM nginx:1.15.5-alpine
+RUN apk add --no-cache bash
+RUN rm -rf /etc/nginx/conf.d
+COPY .docker/Viewer-v2.x /etc/nginx/conf.d
+COPY .docker/Viewer-v2.x/entrypoint.sh /usr/src/
+RUN chmod 777 /usr/src/entrypoint.sh
+COPY --from=builder /usr/src/app/platform/viewer/dist /usr/share/nginx/html
+EXPOSE 80
+EXPOSE 443
+ENTRYPOINT ["/usr/src/entrypoint.sh"]
+CMD ["nginx", "-g", "daemon off;"]

README.md

@@ -27,69 +27,112 @@
 [![CircleCI][circleci-image]][circleci-url]
 [![codecov][codecov-image]][codecov-url]
 [![All Contributors](https://img.shields.io/badge/all_contributors-10-orange.svg?style=flat-square)](#contributors)
+<!-- prettier-ignore-end -->
 
-## What?
+## About
 
-The OHIF Medical Imaging Viewer is for viewing medical images. It can retrieve and load images from most sources and formats; render sets in 2D, 3D, and reconstructed representations; allows for the manipulation, annotation, and serialization of observations; supports internationalization, OpenID Connect, offline use, hotkeys, and many more features.
+The OHIF Medical Imaging Viewer is for viewing medical images. It can retrieve
+and load images from most sources and formats; render sets in 2D, 3D, and
+reconstructed representations; allows for the manipulation, annotation, and
+serialization of observations; supports internationalization, OpenID Connect,
+offline use, hotkeys, and many more features.
 
-Almost everything offers some degree of customization and configuration. If it doesn't support something you need, we accept pull requests and have an ever improving Extension System.
+Almost everything offers some degree of customization and configuration. If it
+doesn't support something you need, we accept pull requests and have an ever
+improving Extension System.
 
 ## Why Choose Us
 
 ### Community & Experience
 
-The OHIF Viewer is a collaborative effort that has served as the basis for many active, production, and FDA Cleared medical imaging viewers. It benefits from our extensive community's collective experience, and from the sponsored contributions of individuals, research groups, and commercial organizations.
+The OHIF Viewer is a collaborative effort that has served as the basis for many
+active, production, and FDA Cleared medical imaging viewers. It benefits from
+our extensive community's collective experience, and from the sponsored
+contributions of individuals, research groups, and commercial organizations.
 
 ### Built to Adapt
 
-...
+After more than 5-years of integrating with many companies and organizations,
+The OHIF Viewer has been rebuilt from the ground up to better address the
+varying workflow and configuration needs of its many users. All of the Viewer's
+core features are built using it's own extension system. The same extensibility
+that allows us to offer:
 
+- 2D and 3D medical image viewing
+- Multiplanar Reconstruction (MPR)
+- Maximum Intensity Project (MIP)
+- Whole slide microscopy viewing
+- PDF and Dicom Structured Report rendering
+- User Access Control (UAC)
+- Context specific toolbar and side panel content
+- and many others
+
+Can be leveraged by you to customize the viewer for your workflow, and to add
+any new functionality you may need (and wish to maintain privately without
+forking).
 
 ### Support
 
-...
+We offer support through
+[GitHub Issues](https://github.com/OHIF/Viewers/issues/new/choose). You can:
+
+- [Report a Bug 🐛](https://github.com/OHIF/Viewers/issues/new?assignees=&labels=Community%3A+Report+%3Abug%3A&template=---bug-report.md)
+- [Request a Feature 🚀](https://github.com/OHIF/Viewers/issues/new?assignees=&labels=Community%3A+Request+%3Ahand%3A&template=---feature-request.md)
+- [Ask a Question 🤗](https://github.com/OHIF/Viewers/issues/new?assignees=&labels=Community%3A+Question+%3Aquestion%3A&template=---support-question.md)
+
+For commercial support, academic collaberations, and answers to common
+questions; please read our
+[documented FAQ](https://docs.ohif.org/frequently-asked-questions.html#does-ohif-offer-commercial-support).
 
 ## Quick Start Deployment
 
-> This is only one of many ways to configure and deploy the OHIF Viewer. To learn more about your options, and how to choose the best one for your requirements, check out [our deployment recipes and documentation](https://docs.ohif.org/deployment/).
+> This is only one of many ways to configure and deploy the OHIF Viewer. To
+> learn more about your options, and how to choose the best one for your
+> requirements, check out
+> [our deployment recipes and documentation](https://docs.ohif.org/deployment/).
 
-The fastest and easiest way to get started is to include the OHIF Viewer with a script tag. In practice, this is as simple as:
+The fastest and easiest way to get started is to include the OHIF Viewer with a
+script tag. In practice, this is as simple as:
 
 - Including the following dependencies with script tags:
-   - [React](https://unpkg.com/react@16/umd/react.production.min.js)
-   - [React Dom](https://unpkg.com/react-dom@16/umd/react-dom.production.min.js)
-   - The [OHIF Viewer](https://unpkg.com/@ohif/viewer)
+  - [React](https://unpkg.com/react@16/umd/react.production.min.js)
+  - [React Dom](https://unpkg.com/react-dom@16/umd/react-dom.production.min.js)
+  - The [OHIF Viewer](https://unpkg.com/@ohif/viewer)
 - Have an element with an ID of `root` on the page
 - Configure the OHIF Viewer at `window.config`:
 
 ```js
 window.config = {
-  routerBasename: "/",
+  routerBasename: '/',
   servers: {
     dicomWeb: [
       {
-        name: "DCM4CHEE",
-        qidoRoot: "https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs",
-        wadoRoot: "https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs",
+        name: 'DCM4CHEE',
+        qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
+        wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
         qidoSupportsIncludeField: true,
-        imageRendering: "wadors",
-        thumbnailRendering: "wadors"
-      }
-    ]
-  }
+        imageRendering: 'wadors',
+        thumbnailRendering: 'wadors',
+      },
+    ],
+  },
 };
 ```
 
-- Install the viewer: `window.OHIFStandaloneViewer.installViewer(window.config);`
+- Install the viewer:
+  `window.OHIFStandaloneViewer.installViewer(window.config);`
 
-This exact setup is demonstrated in this [CodeSandbox](https://codesandbox.io/s/ohif-viewer-script-tag-usage-c4u4t) and in our [Embedding The Viewer](https://docs.ohif.org/deployment/recipes/embedded-viewer.html) deployment recipe.
+This exact setup is demonstrated in this
+[CodeSandbox](https://codesandbox.io/s/viewer-script-tag-tprch) and in our
+[Embedding The Viewer](https://docs.ohif.org/deployment/recipes/embedded-viewer.html)
+deployment recipe.
 
 ## Developing
 
 ### Requirements
 
 - [Yarn 1.17.3+](https://yarnpkg.com/en/docs/install)
-- [Node 8+](https://nodejs.org/en/)
+- [Node 10+](https://nodejs.org/en/)
 - Yarn Workspaces should be enabled on your machine:
   - `yarn config set workspaces-experimental true`
 
@@ -117,21 +160,23 @@ yarn install
 
 ## Commands
 
-These commands are available from the root directory. Each project directory also supports a number of commands that can be found in their respective `README.md` and `project.json` files.
+These commands are available from the root directory. Each project directory
+also supports a number of commands that can be found in their respective
+`README.md` and `project.json` files.
 
-| Yarn Commands        | Description                                                   |
-| -------------------- | ------------------------------------------------------------- |
-| **Develop**          |                                                               |
-| `dev` or `start`     | Default development experience for Viewer                     |
+| Yarn Commands                | Description                                                   |
+| ---------------------------- | ------------------------------------------------------------- |
+| **Develop**                  |                                                               |
+| `dev` or `start`             | Default development experience for Viewer                     |
 | `dev:project <package-name>` | Replace with `core`, `ui`, `i18n`, `cornerstone`, `vtk`, etc. |
-| `test:unit`          | Jest multi-project test runner; overall coverage              |
-| **Deploy**           |                                                               |
-| `build`*             | Builds production output for our PWA Viewer                   |
-| `build:package`*             | Builds production `commonjs` output for our Viewer                 |
-| `build:package-all`*     | Builds commonjs bundles for all projects                      |
+| `test:unit`                  | Jest multi-project test runner; overall coverage              |
+| **Deploy**                   |                                                               |
+| `build`\*                    | Builds production output for our PWA Viewer                   |
+| `build:package`\*            | Builds production `commonjs` output for our Viewer            |
+| `build:package-all`\*        | Builds commonjs bundles for all projects                      |
 
-
-\* - For more information on our different builds, check out our [Deploy Docs][deployment-docs]
+\* - For more information on our different builds, check out our [Deploy
+Docs][deployment-docs]
 
 ## Projects
 
@@ -169,24 +214,26 @@ more about it in our [Architecture Documentation][ohif-architecture].
 
 These projects comprise the
 
-| Name                            | Description | Links |
-| ------------------------------- | ----------- | ----- |
-| [@ohif/core][platform-core]     |             | NPM   |
-| [@ohif/i18n][platform-i18n]     |             | NPM   |
-| [@ohif/viewer][platform-viewer] |             | NPM   |
-| [@ohif/ui][platform-ui]         |             | NPM   |
+| Name                            | Description                                                                                          | Links             |
+| ------------------------------- | ---------------------------------------------------------------------------------------------------- | ----------------- |
+| [@ohif/core][platform-core]     | Business logic and classes that model the data, services, and extensions that are framework agnostic | [NPM][core-npm]   |
+| [@ohif/i18n][platform-i18n]     | Language files and small API for wrapping component/ui text for translations                         | [NPM][i18n-npm]   |
+| [@ohif/viewer][platform-viewer] | The OHIF Viewer. Where we consume and configure all platform library's and extensions                | [NPM][viewer-npm] |
+| [@ohif/ui][platform-ui]         | Reusable React components we consume and compose to build our Viewer's UI                            | [NPM][ui-npm]     |
 
 ### Extensions
 
-This is a list of Extensions maintained by the OHIF Core team. It's possible to customize and configure these extensions, and you can even create your own. You can [read more about extensions here][ohif-extensions].
+This is a list of Extensions maintained by the OHIF Core team. It's possible to
+customize and configure these extensions, and you can even create your own. You
+can [read more about extensions here][ohif-extensions].
 
-| Name                                                           | Description | Links |
-| -------------------------------------------------------------- | ----------- | ----- |
-| [@ohif/extension-cornestone][extension-cornerstone]            |             | NPM   |
-| [@ohif/extension-dicom-html][extension-dicom-html]             |             | NPM   |
-| [@ohif/extension-dicom-microscopy][extension-dicom-microscopy] |             | NPM   |
-| [@ohif/extension-dicom-pdf][extension-dicom-pdf]               |             | NPM   |
-| [@ohif/extension-vtk][extension-vtk]                           |             | NPM   |
+| Name                                                           | Description                                             | Links                  |
+| -------------------------------------------------------------- | ------------------------------------------------------- | ---------------------- |
+| [@ohif/extension-cornestone][extension-cornerstone]            | 2D image viewing, annotation, and segementation tools   | [NPM][cornerstone-npm] |
+| [@ohif/extension-dicom-html][extension-dicom-html]             | Support for viewing DICOM SR as rendered HTML           | [NPM][html-npm]        |
+| [@ohif/extension-dicom-microscopy][extension-dicom-microscopy] | Whole slide microscopy viewing                          | [NPM][microscopy-npm]  |
+| [@ohif/extension-dicom-pdf][extension-dicom-pdf]               | View DICOM wrapped PDFs in a viewport                   | [NPM][pdf-npm]         |
+| [@ohif/extension-vtk][extension-vtk]                           | Volume rendering, reconstruction, and 3D visualizations | [NPM][vtk-npm]         |
 
 ## Acknowledgments
 
@@ -225,11 +272,10 @@ MIT © [OHIF](https://github.com/OHIF)
 [netlify-image]: https://api.netlify.com/api/v1/badges/a5d369ab-18a6-41c3-bcde-83805205ac7f/deploy-status
 [netlify-url]: https://app.netlify.com/sites/ohif/deploys
 [all-contributors-image]: https://img.shields.io/badge/all_contributors-0-orange.svg?style=flat-square
-[contributing-url]: https://github.com/OHIF/Viewers/blob/react/CONTRIBUTING.md
 [circleci-image]: https://circleci.com/gh/OHIF/Viewers.svg?style=svg
 [circleci-url]: https://circleci.com/gh/OHIF/Viewers
-[codecov-image]: https://codecov.io/gh/OHIF/Viewers/branch/react/graph/badge.svg
-[codecov-url]: https://codecov.io/gh/OHIF/Viewers/branch/react
+[codecov-image]: https://codecov.io/gh/OHIF/Viewers/branch/master/graph/badge.svg
+[codecov-url]: https://codecov.io/gh/OHIF/Viewers/branch/master
 [prettier-image]: https://img.shields.io/badge/code_style-prettier-ff69b4.svg?style=flat-square
 [prettier-url]: https://github.com/prettier/prettier
 [semantic-image]: https://img.shields.io/badge/%20%20%F0%9F%93%A6%F0%9F%9A%80-semantic--release-e10079.svg
@@ -256,13 +302,22 @@ MIT © [OHIF](https://github.com/OHIF)
 [extensions-url]: https://docs.ohif.org/advanced/extensions.html
 <!-- Platform -->
 [platform-core]: platform/core/README.md
+[core-npm]: https://www.npmjs.com/package/@ohif/core
 [platform-i18n]: platform/i18n/README.md
+[i18n-npm]: https://www.npmjs.com/package/@ohif/i18n
 [platform-ui]: platform/ui/README.md
+[ui-npm]: https://www.npmjs.com/package/@ohif/ui
 [platform-viewer]: platform/viewer/README.md
+[viewer-npm]: https://www.npmjs.com/package/@ohif/viewer
 <!-- Extensions -->
 [extension-cornerstone]: extensions/cornerstone/README.md
+[cornerstone-npm]: https://www.npmjs.com/package/@ohif/extension-cornerstone
 [extension-dicom-html]: extensions/dicom-html/README.md
+[html-npm]: https://www.npmjs.com/package/@ohif/extension-dicom-html
 [extension-dicom-microscopy]: extensions/dicom-microscopy/README.md
+[microscopy-npm]: https://www.npmjs.com/package/@ohif/extension-dicom-microscopy
 [extension-dicom-pdf]: extensions/dicom-pdf/README.md
+[pdf-npm]: https://www.npmjs.com/package/@ohif/extension-dicom-pdf
 [extension-vtk]: extensions/vtk/README.md
+[vtk-npm]: https://www.npmjs.com/package/@ohif/extension-vtk
 <!-- prettier-ignore-end -->

docs/_redirects

@@ -0,0 +1,3 @@
+# Netlify redirects
+# SPA rules for our docs
+/*    /index.html   200

docs/latest/README.md

@@ -1,7 +1,7 @@
 <div class='row'>
 	<div class='column' style='text-align: right; padding: 0 20px'>
-		<strong>Looking for a Deploy Preview?</strong>
-		<a onclick="function redirect() { window.location.href='/demo/'; } redirect();">Deploy Preview for Viewer</a>
+		<strong>Looking for a Live Demo?</strong>
+		<a href="http://viewer.ohif.org/">Preview The OHIF Viewer</a>
 	</div>
 	<div class='column' style='text-align: left; padding: 0 20px'>
 		<a href="https://www.netlify.com">
@@ -33,14 +33,14 @@ yourself unable to extend the viewer for your purposes, please reach out via our
 [GitHub issues][gh-issues]. We are actively seeking feedback on ways to improve
 our integration and extension points.
 
-## Where to Next?
+## Where to next?
 
 Check out these helpful links:
 
 - Ready to dive into some code? Check out our
   [Getting Started Guide](./essentials/getting-started.md).
 - We're an active, vibrant community.
-  [Learn how you can be more involved.](./contributing.md)
+  [Learn how you can be more involved.](./contributing/index.md)
 - Feeling lost? Read our [help page](./help.md).
 
 <!--

docs/latest/SUMMARY.md

@@ -46,6 +46,6 @@
 ---
 
 - [FAQ](frequently-asked-questions.md)
-- [Contributing](contributing.md)
+- [Contributing](contributing/index.md)
 - [Browser Support](browser-support.md)
 - [Help](help.md)

docs/latest/advanced/architecture.md

@@ -12,28 +12,48 @@ architected, and the role each of it's dependent libraries plays.
 
 ## Overview
 
-The [`OHIF/Viewers`][viewers-project] project contains the source code for the
-OHIF Medical Imaging Viewer. It is effectively a React [progressive web
-app][pwa] (PWA) that combines the business logic housed in
-[`OHIF/ohif-core`][core] and the components in our React Component library
-[`OHIF/react-viewerbase`][component-library]. It provides customization for
-common use cases through [configuration][configuration] and for adding
-functionality via [extensions][extensions].
+The [OHIF Medical Image Viewing Platform][viewers-project] is maintained as a
+[`monorepo`][monorepo]. This means that this repository, instead of containing a
+single project, contains many projects. If you explore our project structure,
+you'll see the following:
+
+```bash
+.
+├── extensions
+│   ├── _example            # Skeleton of example extension
+│   ├── cornerstone         # 2D images w/ Cornerstone.js
+│   ├── dicom-html          # Structured Reports as HTML in viewport
+│   ├── dicom-microscopy    # Whole slide microscopy viewing
+│   ├── dicom-pdf           # View DICOM wrapped PDFs in viewport
+│   └── vtk                 # MPR and Volume support w/ VTK.js
+│
+├── platform
+│   ├── core                # Business Logic
+│   ├── i18n                # Internationalization Support
+│   ├── ui                  # React component library
+│   └── viewer              # Connects platform and extension projects
+│
+├── ...                     # misc. shared configuration
+├── lerna.json              # MonoRepo (Lerna) settings
+├── package.json            # Shared devDependencies and commands
+└── README.md
+```
+
+Continue reading to see how these libraries work together to create the OHIF
+Viewer.
 
 ### Business Logic
 
-Our goal is to maintain the majority of our business logic in
-[`OHIF/ohif-core`](https://github.com/OHIF/ohif-core). `ohif-core` offers
-pre-packaged solutions for features common to Web-based medical imaging viewers.
-For example:
+The [`@ohif/core`][core-github] project offers pre-packaged solutions for
+features common to Web-based medical imaging viewers. For example:
 
 - Hotkeys
-- DICOM Web
+- DICOM Web requests
 - Hanging Protocols
 - Managing a study's measurements
 - Managing a study's DICOM metadata
 - A flexible pattern for extensions
-- [And many others](https://github.com/OHIF/ohif-core/blob/master/src/index.js#L49-L69)
+- And many others
 
 It does this while remaining decoupled from any particular view library or
 rendering logic. While we use it to power our React Viewer, it can be used with
@@ -41,20 +61,42 @@ Vue, React, Vanilla JS, or any number of other frameworks.
 
 ### React Component Library
 
-[`OHIF/react-viewerbase`](https://github.com/OHIF/react-viewerbase) is a React
-Component library that contains the reusable components that power the OHIF
-Viewer. It allows us to build, compose, and test components in isolation; easing
-the development process by reducing the need to stand-up a local PACS with test
-case data.
+[`@ohif/ui`][ui-github] is a React Component library that contains the reusable
+components that power the OHIF Viewer. It allows us to build, compose, and test
+components in isolation; easing the development process by reducing the need to
+stand-up a local PACS with test case data.
+
+Extension authors can also use these same components when building their
+extension's UI; allowing for a consistent look and feel with the rest of the
+application.
 
 [Check out our component library!](https://react.ohif.org/)
 
-### Misc. Extensions
+### Internationalization (i18n)
 
-Want to add custom logic or UI Components to the OHIF Viewer, but don't want to
-maintain a fork? We expose common integration points via
-[extensions](./extensions.md) to make that possible. For a list of extensions
-maintained by OHIF,
+...
+
+### The Viewer
+
+...
+
+### Extensions & Configuration
+
+While OHIF maintains several high value and commonly requested features in its
+own extensions, there are many instances where one may wish to further extend
+the viewer. Some common use cases include:
+
+- Adding AI/ML tools and insights
+- Custom workflows for guided diagnosis
+- Collecting specific annotations for training data or reports
+- Authentication and granular permissions
+- Teleconsultation workflow, image comments, and tracking
+- Adding surgical templating tools and reports
+- and many others
+
+We expose common integration points via [extensions](./extensions.md) to make
+this possible. The viewer and many of our own extensions also offer
+[configuration][configuration]. For a list of extensions maintained by OHIF,
 [check out this helpful table](./extensions.html#ohif-maintained-extensions).
 
 If you find yourself thinking "I wish the Viewer could do X", and you can't
@@ -67,15 +109,14 @@ looking for ways to improve our extensibility ^\_^
 
 This diagram is a conceptual illustration of how the Viewer is architected.
 
-1. (optional) `extensions` can be registered with `ohif-core`'s extension
+1. (optional) `extensions` can be registered with `@ohif/core`'s extension
    manager
-2. `ohif-core` provides bussiness logic and a way for `viewer` to access
+2. `@ohif/core` provides bussiness logic and a way for `@ohif/viewer` to access
    registered extensions
-3. The `viewer` composes and provides data to components from our component
-   library (`react-viewerbase`)
-4. The `viewer` can be built and served as a stand-alone PWA, or as an
-   embeddable package
-   ([`ohif-viewer`](https://www.npmjs.com/package/ohif-viewer))
+3. The `@ohif/viewer` composes and provides data to components from our
+   component library (`@ohif/ui`)
+4. The `@ohif/viewer` can be built and served as a stand-alone PWA, or as an
+   embeddable package ([`@ohif/viewer`][viewer-npm])
 
 ![Architecture Diagram](../assets/img/architecture-diagram.png)
 
@@ -83,17 +124,17 @@ This diagram is a conceptual illustration of how the Viewer is architected.
 
 ## Common Questions
 
-> When should I use the packaged source `ohif-viewer` versus building a PWA from
-> the source?
+> When should I use the packaged source `@ohif/viewer` versus building a PWA
+> from the source?
 
 ...
 
 > Can I create my own Viewer using Vue.js or Angular.js?
 
 You can, but you will not be able to leverage as much of the existing code and
-components. `ohif-core` could still be used for business logic, and to provide a
-model for extensions. `react-viewerbase` would then become a guide for the
-components you would need to recreate.
+components. `@ohif/core` could still be used for business logic, and to provide
+a model for extensions. `@ohif/ui` would then become a guide for the components
+you would need to recreate.
 
 <!--
   Links
@@ -101,9 +142,10 @@ components you would need to recreate.
 
 <!-- prettier-ignore-start -->
 [viewers-project]: https://github.com/OHIF/Viewers
+[viewer-npm]: https://www.npmjs.com/package/@ohif/viewer
 [pwa]: https://developers.google.com/web/progressive-web-apps/
-[core]: https://github.com/OHIF/ohif-core
-[component-library]: https://github.com/OHIF/react-viewerbase
 [configuration]: ../essentials/configuration.md
-[extensions]: ./extensions.m
+[extensions]: ./extensions.md
+[core-github]: https://github.com/OHIF/viewers/platform/core
+[ui-github]: https://github.com/OHIF/Viewers/platform/ui
 <!-- prettier-ignore-end -->

docs/latest/advanced/extensions.md

@@ -160,6 +160,7 @@ An extension can register a Toolbar Module by providing a `getToolbarModule()`
 method that returns a React Component. The component does not receive any props.
 If you want to modify or react to state, you will need to connect to the redux
 store.
+The given toolbar must determine its set of elements and the context of them. The set of elements will be listed on toolbar `definitions`.
 
 ![Toolbar Extension](../assets/img/extensions-toolbar.gif)
 
@@ -170,6 +171,31 @@ Toolbar components are rendered in the `ToolbarRow` component.
 For a complete example implementation,
 [check out the OHIFCornerstoneViewport's Toolbar Module](https://github.com/OHIF/Viewers/blob/master/extensions/cornerstone/src/toolbarModule.js).
 
+##### Toolbar Custom Component
+
+Toolbar elements can define its own custom react component to be consumed when rendering it. So far, it accepts `Functional` and `Class` Components. For that, you just need to expose your `CustomToolbarComponent` as the value of key `CustomComponent`. In case the property `CustomComponent` is not present, a default toolbar component will be used to render it. See bellow
+
+```js
+definitions: [
+...
+    {
+        id: 'Custom',
+        label: 'Custom',
+        icon: 'custom-icon',
+        CustomComponent: CustomToolbarComponent,
+    }
+...
+]
+
+```
+`CustomComponent` components will receive the following props:
+- parentContext: parent context. (In most of the cases it will be a ToolbarRow instance)
+- toolbarClickCallback: callback method when clicking on toolbar
+- button: its own definition object
+- key: react key prop
+- activeButtons: list of active elements
+- isActive: if current
+
 #### SopClassHandler
 
 ...

docs/latest/contributing.md

@@ -1,103 +0,0 @@
-# Contributing
-
-## I would like to contribute code - how do I do this?
-
-Fork the repository, make your change and submit a pull request.
-
-- The OHIF Viewer consists of code from three different repositories. Make sure
-  your change is modifying the appropriate one:
-  - `ohif-core`: Business Logic
-  - `react-viewerbase`: Reusable React Component Library
-  - `Viewers`: The glue, PWA, and primary extension point
-- At a minimum, you may want to read the following documentation:
-  - [Essentials: Getting Started](./essentials/getting-started.md)
-  - [Advanced: Architecture](./advanced/architecture.md)
-
-### When changes impact multiple repositories
-
-This is a particularly tricky scenario. We don't want to publish code in one
-repository, just so we can test and complete the other half of its requirements
-in another. Thankfully, there are a couple of ways you can test unpublished
-dependent changes locally before publishing:
-
-- [Use `yarn link`](https://yarnpkg.com/en/docs/cli/link)
-
-For example if you are working on `ohif-core` and would like to use your local
-version to debug a problem in `Viewers`, simply run yarn link inside of the
-`ohif-core` project.
-
-- If you're experiencing issues with `yarn link`,
-  [try `yalc`](https://github.com/whitecolor/yalc)
-
-Yalc provides an improved workflow as we add more and more dependent packages
-that are "in-progress". This comes into play as we begin working on extensions
-and their dependencies.
-
-```js
-// Install yalc for the first time
-yarn global add yalc
-
-// EXAMPLE: using an in-development version of ohif-core w/ Viewers locally
-// 1. Navigate to ohif-core's project root
-yarn install
-yalc publish
-
-// 2. Run the following after each change to ohif-core
-yarn build
-yalc push .
-
-// 3. Use the local package in our Viewers project. Navigate to the Viewers
-//    Project root.
-yarn install
-yalc add ohif-core
-yarn run dev
-```
-
-## Any guidance on submitting changes?
-
-While we do appreciate code contributions, triaging and integrating contributed
-code changes can be very time consuming. Please consider the following tips when
-working on your pull requests:
-
-- Functionality is appropriate for the repository. Consider creating a GitHub
-  issue to discuss your suggested changes.
-- The scope of the pull request is not too large. Please consider separate pull
-  requests for each feature as big pull requests are very time consuming to
-  understand.
-
-We will provide feedback on your pull requests as soon as possible. Following
-the tips above will help ensure your changes are reviewed.
-
-## Testing contribution pull requests
-
-OHIF uses [netlify](netlify.com) so that pull requests are autogenerated and
-available for testing.
-
-For example, [this url][example-url] allows you to test [pull request 237, the
-request that created this FAQ entry,][pr-237] using data pulled from Amazon S3.
-
-Replacing the number 237 in the link below with your pull request number should
-let you test it as well and you can use this link for discussions on github
-without requiring reviewers to download and build your branch.
-
-```bash
-https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json
-```
-
-If you have made a documentation change, a link like this will let you preview
-the gitbook generated by the pull request:
-
-```bash
-https://deploy-preview-237--ohif.netlify.com/contributing.html
-```
-
-<!--
-  Links
-  -->
-
-<!-- prettier-ignore-start -->
-
-[example-url]: https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json
-[pr-237]: https://github.com/OHIF/Viewers/pull/237
-
-<!-- prettier-ignore-end -->

docs/latest/contributing/index.md

@@ -0,0 +1,146 @@
+# Contributing
+
+## How can I help?
+
+Fork the repository, make your change and submit a pull request. If you would
+like to discuss the changes you intend to make to clarify where or how they
+should be implemented, please don't hesitate to create a new issue. At a
+minimum, you may want to read the following documentation:
+
+- [Essentials: Getting Started](./essentials/getting-started.md)
+- [Advanced: Architecture](./advanced/architecture.md)
+
+Pull requests that are:
+
+- Small
+- [Well tested](./testing.md)
+- Decoupled
+
+Are much more likely to get reviewed and merged in a timely manner.
+
+## When changes impact multiple repositories
+
+While this can be tricky, we've tried to reduce how often this situation crops
+up this with our [recent switch to a monorepo][monorepo]. Our maintained
+extensions, ui components, internationalization library, and business logic can
+all be developed by simply running `yarn run dev` from the repository root.
+
+Testing the viewer with locally developed, unpublished package changes from a
+package outside of the monorepo is most common with extension development. Let's
+demonstrate how to accomplish this with two commonly forked extension
+dependencies:
+
+### `cornerstone-tools`
+
+On your local file system:
+
+```bash
+# code/my-projects/
+.
+├── cornerstonejs/cornerstone-tools
+└── ohif/viewers
+```
+
+- Open a terminal/shell
+- Navigate to `cornerstonejs/cornerstone-tools`
+  - `npm install`
+  - [`yarn link`](https://yarnpkg.com/en/docs/cli/link)
+  - `npm run dev`
+- Open a new terminal/shell
+- Navigate to `ohif/viewers`.
+  - `yarn install`
+  - [`yarn link cornerstone-tools`](https://yarnpkg.com/en/docs/cli/link)
+  - `yarn run dev`
+
+As you make changed to `cornerstone-tools`, and it's output is rebuilt, you
+should see the following behavior:
+
+<div style="text-align: center;">
+  <a href="/assets/img/cornerstone-tools-link.gif">
+    <img src="/assets/img/cornerstone-tools-link.gif" alt="Example of linked cornerstone-tools package" style="margin: 0 auto; max-width: 500px;" />
+  </a>
+  <div><i>example of linked cornerstone-tools package</i></div>
+</div>
+
+If you wish to stop using your local package, run the following commands in the
+`ohif/viewers` repository root:
+
+- `yarn unlink cornerstone-tools`
+- `yarn install --force`
+
+### `react-vtkjs-viewport`
+
+On your local file system:
+
+```bash
+# code/my-projects/
+.
+├── ohif/react-vtkjs-viewport
+└── ohif/viewers
+```
+
+- Open a terminal/shell
+- Navigate to `ohif/react-vtkjs-viewport`
+  - `yarn install`
+  - [`yarn link`](https://yarnpkg.com/en/docs/cli/link)
+  - `yarn run start`
+- Open a new terminal/shell
+- Navigate to `ohif/viewers`.
+  - `yarn install`
+  - [`yarn link react-vtkjs-viewport`](https://yarnpkg.com/en/docs/cli/link)
+  - `yarn run dev`
+
+#### Other linkage notes
+
+We're still working out some of the kinks with local package development as
+there are a lot of factors that can influence the behavior of our development
+server and bundler. If you encounter issues not addressed here, please don't
+hesitate to reach out on GitHub.
+
+## Any guidance on submitting changes?
+
+While we do appreciate code contributions, triaging and integrating contributed
+code changes can be very time consuming. Please consider the following tips when
+working on your pull requests:
+
+- Functionality is appropriate for the repository. Consider creating a GitHub
+  issue to discuss your suggested changes.
+- The scope of the pull request is not too large. Please consider separate pull
+  requests for each feature as big pull requests are very time consuming to
+  understand.
+
+We will provide feedback on your pull requests as soon as possible. Following
+the tips above will help ensure your changes are reviewed.
+
+## Testing contribution pull requests
+
+OHIF uses [netlify](netlify.com) so that pull requests are autogenerated and
+available for testing.
+
+For example, [this url][example-url] allows you to test [pull request 237, the
+request that created this FAQ entry,][pr-237] using data pulled from Amazon S3.
+
+Replacing the number 237 in the link below with your pull request number should
+let you test it as well and you can use this link for discussions on github
+without requiring reviewers to download and build your branch.
+
+```bash
+https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json
+```
+
+If you have made a documentation change, a link like this will let you preview
+the gitbook generated by the pull request:
+
+```bash
+https://deploy-preview-237--ohif.netlify.com/contributing.html
+```
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[example-url]: https://deploy-preview-237--ohif.netlify.com/viewer/?url=https://s3.eu-central-1.amazonaws.com/ohif-viewer/sampleDICOM.json
+[pr-237]: https://github.com/OHIF/Viewers/pull/237
+[monorepo]: https://github.com/OHIF/Viewers/issues/768
+<!-- prettier-ignore-end -->

docs/latest/deployment/index.md

@@ -1,11 +1,11 @@
 # Deployment
 
 The OHIF Viewer can be embedded in other web applications via it's [packaged
-script source][ohif-viewer-npm], or served up as a stand-alone PWA ([progressive
-web application][pwa-url]) by building and hosting a collection of static
-assets. In either case, you will need to configure your instance of the Viewer
-so that it can connect to your data source (the database or PACS that provides
-the data your Viewer will display).
+script source][viewer-npm], or served up as a stand-alone PWA ([progressive web
+application][pwa-url]) by building and hosting a collection of static assets. In
+either case, you will need to configure your instance of the Viewer so that it
+can connect to your data source (the database or PACS that provides the data
+your Viewer will display).
 
 ## Overview
 
@@ -196,8 +196,7 @@ Please feel free to suggest or contribute your own recipes.
   -->
 
 <!-- prettier-ignore-start -->
-
-[ohif-viewer-npm]: https://www.npmjs.com/package/ohif-viewer
+[viewer-npm]: https://www.npmjs.com/package/@ohif/viewer
 [pwa-url]: https://developers.google.com/web/progressive-web-apps/
 [static-assets-url]: https://www.maxcdn.com/one/visual-glossary/static-content/
 [app-store]: https://medium.freecodecamp.org/i-built-a-pwa-and-published-it-in-3-app-stores-heres-what-i-learned-7cb3f56daf9b
@@ -206,5 +205,5 @@ Please feel free to suggest or contribute your own recipes.
 [host-static-assets]: https://www.netlify.com/blog/2016/05/18/9-reasons-your-site-should-be-static/
 [cors]: https://developer.mozilla.org/en-US/docs/Web/HTTP/CORS
 [code-flows]: https://medium.com/@darutk/diagrams-of-all-the-openid-connect-flows-6968e3990660
-[code-sandbox]: https://codesandbox.io/s/ohif-viewer-script-tag-usage-b3st9
+[code-sandbox]: https://codesandbox.io/s/viewer-script-tag-tprch
 <!-- prettier-ignore-end -->

docs/latest/deployment/recipes/build-for-production.md

@@ -19,9 +19,6 @@ _With Git:_
 ```bash
 # Clone the remote repository to your local machine
 git clone https://github.com/OHIF/Viewers.git
-
-# Make sure the local code reflects the `react` version of the OHIF Viewer
-git checkout react
 ```
 
 More on: _[`git clone`](https://git-scm.com/docs/git-clone),
@@ -29,7 +26,7 @@ More on: _[`git clone`](https://git-scm.com/docs/git-clone),
 
 _From .zip:_
 
-[OHIF/Viewers: react.zip](https://github.com/OHIF/Viewers/archive/react.zip)
+[OHIF/Viewers: react.zip](https://github.com/OHIF/Viewers/archive/master.zip)
 
 ### Restore Dependencies & Build
 
@@ -37,20 +34,24 @@ Open your terminal, and navigate to the directory containing the source files.
 Next run these commands:
 
 ```js
+// If you haven't already, enable yarn workspaces
+yarn config set workspaces-experimental true
+
 // Restore dependencies
 yarn install
 
 // Build source code for production
-yarn run build:web
+yarn run build
 ```
 
-If everything worked as expected, you should have a new `build/` directory in
-the project's folder. It should roughly resemble the following:
+If everything worked as expected, you should have a new `dist/` directory in the
+project's folder. It should roughly resemble the following:
 
 ```bash
-build
-├── config/
-├── static/
+dist/
+├── app-config.js
+├── app.bundle.js
+├── app.css
 ├── index.html
 ├── manifest.json
 ├── service-worker.js
@@ -64,60 +65,15 @@ how to configure the project for your own imaging archive below.
 
 ### Configuration
 
-> This step assumes you have an imaging archive. If you need assistance setting
-> one up, check out the [`Data Source` Guide](./../../essentials/data-source.md)
-> or a deployment recipe that contains an open source Image Archive
+The configuration for our viewer is in the `<root>platform/viewer/public/config`
+directory. Our build process knows which configuration file to use based on the
+`APP_CONFIG` environment variable. By default, its value is
+[`config/default.js`][default-config]. The majority of the viewer's features,
+and registered extension's features, are configured using this file.
 
-#### How it Works
-
-The configuration for our project is in the `/public/config` directory. Our
-build process knows which configuration file to use based on the `APP_CONFIG`
-environment variable. By default, its value is
-[`default.js`](https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/config/default.js).
-When we build, the `%APP_CONFIG%` value in
-our[`/public/index.html`](https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/index.html)
-file is substituted for the correct configuration file's name. This sets
-the`window.config` equal to our configuration file's value.
-
-#### How do I configure my project?
-
-The simplest way is to update the existing default config:
-
-_/public/config/default.js_
-
-```js
-window.config = {
-  routerBasename: '/',
-  servers: {
-    dicomWeb: [
-      {
-        name: 'DCM4CHEE',
-        wadoUriRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado',
-        qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
-        wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
-        qidoSupportsIncludeField: true,
-        imageRendering: 'wadors',
-        thumbnailRendering: 'wadors',
-        requestOptions: {
-          requestFromBrowser: true,
-        },
-      },
-    ],
-  },
-};
-```
-
-You can also create a new config file and specify its path relative to the build
-output's root by setting the `APP_CONFIG` environment variable. You can set the
-value of this environment variable a few different ways:
-
-- [Add a temporary environment variable in your shell](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-temporary-environment-variables-in-your-shell)
-- [Add environment specific variables in `.env` file(s)](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-development-environment-variables-in-env)
-- Using the `cross-env` package in an npm script:
-  - `"build": "cross-env APP_CONFIG=config/my-config.js react-scripts build"`
-
-After updating the configuration, `yarn run build:web` to generate updated build
-output.
+The easiest way to apply your own configuration is to modify the `default.js`
+file. For more advanced cofiguration options, check out our
+[configuration essentials guide](/essentials/configuration.md).
 
 ## Next Steps
 
@@ -141,7 +97,7 @@ _Advanced_
 ### Testing Build Output Locally
 
 A quick way to test your build output locally is to spin up a small webserver.
-You can do this by running the following commands in the `build/` output
+You can do this by running the following commands in the `dist/` output
 directory:
 
 ```js
@@ -162,8 +118,7 @@ web application. For a starting point, check out this repository's own use of:
 
 - [CircleCI][circleci]: [config.yaml][circleci-config]
 - [Netlify][netlify]: [netlify.toml][netlify.toml] |
-  [generateStaticSite.sh][generatestaticsite.sh]
-- [Semantic-Release][semantic-release]: [.releaserc][releaserc]
+  [build-deploy-preview.sh][build-deploy-preview.sh]
 
 ## Troubleshooting
 
@@ -173,10 +128,8 @@ web application. For a starting point, check out this repository's own use of:
 
 <!-- prettier-ignore-start -->
 [circleci]: https://circleci.com/gh/OHIF/Viewers
-[circleci-config]: https://github.com/OHIF/Viewers/blob/react/.circleci/config.yml
+[circleci-config]: https://github.com/OHIF/Viewers/blob/master/.circleci/config.yml
 [netlify]: https://app.netlify.com/sites/ohif/deploys
-[netlify.toml]: https://github.com/OHIF/Viewers/blob/react/netlify.toml
-[generateStaticSite.sh]: https://github.com/OHIF/Viewers/blob/react/generateStaticSite.sh
-[semantic-release]: https://semantic-release.gitbook.io/semantic-release/
-[releaserc]: https://github.com/OHIF/Viewers/blob/react/.releaserc
+[netlify.toml]: https://github.com/OHIF/Viewers/blob/master/netlify.toml
+[build-deploy-preview.sh]: https://github.com/OHIF/Viewers/blob/master/.netlify/build-deploy-preview.sh
 <!-- prettier-ignore-end -->

docs/latest/deployment/recipes/embedded-viewer.md

@@ -12,35 +12,18 @@ include tags. Here's how it works:
 
 <ul>
   <li>
-    <a href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css">
-      <code>bootstrap@3.3.7</code>
+    <a href="https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700&display=swap">
+      <code>Google Font: Roboto</code>
     </a>
   </li>
   <li>
-    <a href="https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700|Sanchez&display=swap">
-      <code>Google Fonts, Sanchez & Roboto</code>
-    </a>
-  </li>
-  <li>
-    <a href="https://unpkg.com/react@16/umd/react.production.min.js">
-      <code>react@16.8.6</code>
-    </a>
-  </li>
-  <li>
-    <a href="https://unpkg.com/react-dom@16/umd/react-dom.production.min.js">
-      <code>react-dom@16.8.6</code>
-    </a>
-  </li>
-  <li>
-    <a href="https://unpkg.com/ohif-viewer/dist/index.umd.js">
-      <code>ohif-viewer@latest</code>
+    <a href="https://unpkg.com/@ohif/viewer">
+      <code>@ohif/viewer@latest</code>
     </a>
   </li>
 </ul>
 
 <ol start="2">
-  <li>The <a href="">WADO Image Loader Codecs and Web Worker source code</a>
-  should be accessible from your server's root</li>
   <li>Create a JS Object to hold the OHIF Viewer's configuration. Here are some
    example values that would allow the viewer to hit our public PACS:</li>
 </ol>
@@ -60,28 +43,64 @@ window.config = {
         qidoSupportsIncludeField: true,
         imageRendering: 'wadors',
         thumbnailRendering: 'wadors',
-        requestOptions: {
-          requestFromBrowser: true,
-        },
       },
     ],
   },
 };
 ```
 
-<ol start="5"><li>
+<ol start="3"><li>
   Render the viewer in the web page's target <code>div</code>
 </li></ol>
 
 ```js
-// Made available by the `ohif-viewer` script included in step 1
-var Viewer = window.OHIFStandaloneViewer.App;
-var app = React.createElement(Viewer, window.config, null);
-
-ReactDOM.render(app, document.getElementById('ohif-viewer-target'));
+// Made available by the `@ohif/viewer` script included in step 1
+var containerId = 'id-of-div-to-render-component-to';
+var componentRenderedOrUpdatedCallback = function() {
+  console.log('OHIF Viewer rendered/updated');
+};
+window.OHIFViewer.installViewer(
+  window.config,
+  containerId,
+  componentRenderedOrUpdatedCallback
+);
 ```
 
-#### Tips & Tricks
+You can see a live example of this recipe in [this CodeSandbox][code-sandbox].
+
+## Add Extensions
+
+The UMD build of the OHIF Viewer is a "light weight" build that only contains
+the core extensions required for basic 2D image viewing. It's possible to add
+other extensions at runtime.
+
+This only requires us to include a single script tag, and add it using the
+`extensions` key to our config. In this practical example, we register our
+popular whole slide microscopy extension:
+
+```html
+<script
+  src="https://unpkg.com/@ohif/extension-dicom-microscopy@0.50.5/dist/index.umd.js"
+  crossorigin
+></script>
+
+<!-- --->
+<script>
+  window.config = {
+    // ...
+    extensions: [OHIFExtDicomMicroscopy],
+  };
+</script>
+```
+
+You can see an example of a slide microscopy study in the viewer [with the
+extension enabled here][whole-slide-ext-demo] ([source code][ext-code-sandbox])
+and [without it here][whole-slide-base-demo] ([source code][code-sandbox]).
+
+You can read more about extensions and how to create your own in our
+[extensions guide](/advanced/extensions.md).
+
+#### FAQ
 
 > I'm having trouble getting this to work. Where can I go for help?
 
@@ -89,16 +108,34 @@ First, check out this fully functional [CodeSandbox][code-sandbox] example. If
 you're still having trouble, feel free to search or GitHub issues. Can't find
 anything related your problem? Create a new one.
 
-> When I include bootstrap, other styles on my page no longer work correctly.
-> What can I do?
+> My application's styles are impacting the OHIF Viewer's look and feel. What
+> can I do?
 
-When we include `bootsrap` (and the other dependencies), they are added
-globally. This has the potential of causing conflicts with other scripts and
-styles on the page. To prevent this, `embed` the viewer in a new/empty web page.
-Have that working? Good. Now `embed` that new page using an
+When you include stylesheets and scripts, they are added globally. This has the
+potential of causing conflicts with other scripts and styles on the page. To
+prevent this, `embed` the viewer in a new/empty web page. Have that working?
+Good. Now `embed` that new page using an
 [`<iframe>` element](https://developer.mozilla.org/en-US/docs/Web/HTML/Element/iframe).
 
 This should produce the expected result while also protecting your page from any
 globally defined styles/scripts.
 
-[code-sandbox]: https://codesandbox.io/s/ohif-viewer-script-tag-usage-b3st9
+> We're trying to embed the OHIF Viewer into an existing React App, but seeing
+> react-dom and react conflicts. What can we do?
+
+`installViewer` is a convenience method that pulls in some dependencies that may
+not be compatible with existing `react` apps. `@ohif/viewer` also exports `App`
+which is a react component that takes the `configuration` outlined above as
+props. You can use it as a reusable component, and to avoid `react` version
+conflict issues.
+
+<!--
+  LINKS
+  -->
+
+<!-- prettier-ignore-start -->
+[code-sandbox]: https://codesandbox.io/s/viewer-script-tag-tprch
+[whole-slide-base-demo]: https://tprch.csb.app/viewer/1.2.392.200140.2.1.1.1.2.799008771.2020.1519719354.757
+[ext-code-sandbox]: https://codesandbox.io/s/viewer-script-tag-microscopy-extension-44unk
+[whole-slide-ext-demo]: https://44unk.csb.app/viewer/1.2.392.200140.2.1.1.1.2.799008771.2448.1519719572.518
+<!-- prettier-ignore-end -->

docs/latest/deployment/recipes/nginx--image-archive.md

@@ -121,11 +121,7 @@ likely want to update:
 
 #### OHIF Viewer
 
-The OHIF Viewer's configuration is imported from a static `.js` file and made
-available globally at `window.config`. The configuration we use is set to a
-specific file when we build the viewer, and determined by the env variable:
-`APP_CONFIG`. You can see where we set its value in the `dockerfile` for this
-solution:
+The OHIF Viewer's configuration is imported from a static `.js` file. The configuration we use is set to a specific file when we build the viewer, and determined by the env variable: `APP_CONFIG`. You can see where we set its value in the `dockerfile` for this solution:
 
 `ENV APP_CONFIG=config/docker_openresty-orthanc.js`
 

docs/latest/deployment/recipes/user-account-control.md

@@ -122,11 +122,7 @@ likely want to update:
 
 #### OHIF Viewer
 
-The OHIF Viewer's configuration is imported from a static `.js` file and made
-available globally at `window.config`. The configuration we use is set to a
-specific file when we build the viewer, and determined by the env variable:
-`APP_CONFIG`. You can see where we set its value in the `dockerfile` for this
-solution:
+The OHIF Viewer's configuration is imported from a static `.js` file. The configuration we use is set to a specific file when we build the viewer, and determined by the env variable: `APP_CONFIG`. You can see where we set its value in the `dockerfile` for this solution:
 
 `ENV APP_CONFIG=config/docker_openresty-orthanc-keycloak.js`
 

docs/latest/essentials/configuration.md

@@ -4,22 +4,47 @@
 > one up, check out the [`Data Source` Guide](./data-source.md) or a deployment
 > recipe that contains an open source Image Archive
 
-## How it Works
+## Overview
 
-The configuration for our project is in the `/public/config` directory. Our
-build process knows which configuration file to use based on the `APP_CONFIG`
-environment variable. By default, its value is
-[`default.js`](https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/config/default.js).
-When we build, the `%APP_CONFIG%` value in
-our[`/public/index.html`](https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/index.html)
-file is substituted for the correct configuration file's name. This sets the
-`window.config` equal to our configuration file's value.
+### Configuration Files
+
+The configuration for our viewer is in the `<root>platform/viewer/public/config`
+directory. Our build process knows which configuration file to use based on the
+`APP_CONFIG` environment variable. By default, its value is
+[`config/default.js`][default-config]. The majority of the viewer's features,
+and registered extension's features, are configured using this file.
+
+**Embedded Use Note:**
+
+Alternatively, when using the `commonjs` bundle for embedded use cases, these
+same values are what you'll pass to `installViewer` method:
+
+`OHIFStandaloneViewer.installViewer(window.config)`
+
+### Environment Variables
+
+We use environment variables at build and dev time to change the Viewer's
+behavior. We can update the `HTML_TEMPLATE` to easily change which extensions
+are registered, and specify a different `APP_CONFIG` to connect to an
+alternative data source (or even specify different default hotkeys).
+
+| Environment Variable | Description                                                                                        | Default             |
+| -------------------- | -------------------------------------------------------------------------------------------------- | ------------------- |
+| `HTML_TEMPLATE`      | Which [HTML template][html-templates] to use as our web app's entry point. Specific to PWA builds. | `index.html`        |
+| `PUBLIC_URL`         | The route relative to the host that the app will be served from. Specific to PWA builds.           | `/`                 |
+| `APP_CONFIG`         | Which [configuration file][config-file] to copy to output as `app-config.js`                       | `config/default.js` |
+| `PROXY_TARGET`       | When developing, proxy requests that match this pattern to `PROXY_DOMAIN`                          | `undefined`         |
+| `PROXY_DOMAIN`       | When developing, proxy requests from `PROXY_TARGET` to `PROXY_DOMAIN`                              | `undefined`         |
+
+### Registering Extensions
+
+> :warn: Instructions coming soon
 
 ## How do I configure my project?
 
 The simplest way is to update the existing default config:
 
-_/public/config/default.js_
+_/platform/viewer/public/config/default.js_
 
 ```js
 window.config = {
@@ -34,9 +59,6 @@ window.config = {
         qidoSupportsIncludeField: true,
         imageRendering: 'wadors',
         thumbnailRendering: 'wadors',
-        requestOptions: {
-          requestFromBrowser: true,
-        },
       },
     ],
   },
@@ -47,10 +69,24 @@ You can also create a new config file and specify its path relative to the build
 output's root by setting the `APP_CONFIG` environment variable. You can set the
 value of this environment variable a few different ways:
 
-- [Add a temporary environment variable in your shell](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-temporary-environment-variables-in-your-shell)
-- [Add environment specific variables in `.env` file(s)](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-development-environment-variables-in-env)
+- ~[Add a temporary environment variable in your shell](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-temporary-environment-variables-in-your-shell)~
+  - Previous `react-scripts` functionality that we need to duplicate with
+    `dotenv-webpack`
+- ~[Add environment specific variables in `.env` file(s)](https://facebook.github.io/create-react-app/docs/adding-custom-environment-variables#adding-development-environment-variables-in-env)~
+  - Previous `react-scripts` functionality that we need to duplicate with
+    `dotenv-webpack`
 - Using the `cross-env` package in an npm script:
   - `"build": "cross-env APP_CONFIG=config/my-config.js react-scripts build"`
 
-After updating the configuration, `yarn run build:web` to generate updated build
+After updating the configuration, `yarn run build` to generate updated build
 output.
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[default-config]: https://github.com/OHIF/Viewers/blob/master/platform/viewer/public/config/default.js
+[html-templates]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/public/html-templates
+[config-files]: https://github.com/OHIF/Viewers/tree/master/platform/viewer/public/config
+<!-- prettier-ignore-end -->

docs/latest/essentials/data-source.md

@@ -35,10 +35,10 @@ For our purposes, we will be using `Orthanc`, but you can see a list of
 _Not sure if you have `docker` installed already? Try running `docker --version`
 in command prompt or terminal_
 
-> If you are using `Docker Toolbox` you need to change the _proxy_ parameter in
-> _package.json_ to http://192.168.99.100:8042 or the ip docker-machine ip
-> throws. This is the value [`react-scripts`][react-proxy] uses to proxy
-> requests
+> If you are using `Docker Toolbox` you need to change the _PROXY_DOMAIN_
+> parameter in _platform/viewer/package.json_ to http://192.168.99.100:8042 or
+> the ip docker-machine ip throws. This is the value [`WebPack`][webpack-proxy]
+> uses to proxy requests
 
 ### Running Orthanc
 
@@ -51,8 +51,9 @@ yarn run orthanc:up
 
 _Upload your first Study:_
 
-1. Navigate to [Orthanc's web interface](http://localhost:8899) at
-   `http://localhost:8899` in a web browser.
+1. Navigate to
+   [Orthanc's web interface](http://localhost:8042/app/explorer.html) at
+   `http://localhost:8042/app/explorer.html` in a web browser.
 2. In the top right corner, click "Upload"
 3. Click "Select files to upload..." and select one or more DICOM files
 4. Click "Start the upload"
@@ -60,17 +61,20 @@ _Upload your first Study:_
 #### Orthanc: Learn More
 
 You can see the `docker-compose.yml` file this command runs at
-[`<project-root>/platform/viewer/.recipes/Nginx-Orthanc/`](https://github.com/OHIF/Viewers/tree/master/platform/viewer/.recipes/Nginx-Orthanc),
-and more on Orthanc for Docker in [Orthanc's documentation][orthanc-docker].
+[`<project-root>/.docker/Nginx-Orthanc/`][orthanc-docker-compose], and more on
+Orthanc for Docker in [Orthanc's documentation][orthanc-docker].
 
 ### Connecting to Orthanc
 
 Now that we have a local Orthanc instance up and running, we need to configure
 our web application to connect to it. Open a new terminal window, navigate to
-this project's root directory, and run:
+this repository's root directory, and run:
 
 ```bash
-# If you haven't already, restore dependencies
+# If you haven't already, enable yarn workspaces
+yarn config set workspaces-experimental true
+
+# Restore dependencies
 yarn install
 
 # Run our dev command, but with the local orthanc config
@@ -87,18 +91,24 @@ is running the `dev:orthanc` script in our project's `package.json`. That script
 is:
 
 ```js
-cross-env PORT=5000 APP_CONFIG=config/docker_nginx-orthanc.js react-scripts start
+cross-env NODE_ENV=development PROXY_TARGET=/dicom-web PROXY_DOMAIN=http://localhost:8042 APP_CONFIG=config/docker_nginx-orthanc.js webpack-dev-server --config .webpack/webpack.pwa.js -w
 ```
 
-- `cross-env` sets two environment variables
-  - PORT: 5000
+- `cross-env` sets three environment variables
+  - PROXY_TARGET: `/dicom-web`
+  - PROXY_DOMAIN: `http://localhost:8042`
   - APP_CONFIG: `config/docker_nginx-orthanc.js`
-- `react-scripts` runs it's `start` script. This is [the de-facto
-  way][cra-start] to run a "Create React App" in development mode.
+- `webpack-dev-server` runs using the `.webpack/webpack.pwa.js` configuration
+  file. It will watch for changes and update as we develop.
+
+`PROXY_TARGET` and `PROXY_DOMAIN` tell our development server to proxy requests
+to `Orthanc`. This allows us to bypass CORS issues that normally occur when
+requesting resources that live at a different domain.
 
 The `APP_CONFIG` value tells our app which file to load on to `window.config`.
-By default, our app uses the file at `<project-root>/public/config/default.js`.
-Here is what that configuration looks like:
+By default, our app uses the file at
+`<project-root>/platform/viewer/public/config/default.js`. Here is what that
+configuration looks like:
 
 ```js
 window.config = {
@@ -145,8 +155,8 @@ _Feel free to make a Pull Request if you want to add to this list._
 [dcmjs-org]: https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/wado
 [dicom-web]: https://en.wikipedia.org/wiki/DICOMweb
 [storescu]: http://support.dcmtk.org/docs/storescu.html
-[cra-start]: https://github.com/facebook/create-react-app#npm-start-or-yarn-start
-[react-proxy]: https://facebook.github.io/create-react-app/docs/proxying-api-requests-in-development#configuring-the-proxy-manually
+[webpack-proxy]: https://webpack.js.org/configuration/dev-server/#devserverproxy
+[orthanc-docker-compose]: https://github.com/OHIF/Viewers/tree/master/.docker/Nginx-Orthanc
 <!-- Archives -->
 [dcm4chee]: https://github.com/dcm4che/dcm4chee-arc-light
 [dcm4chee-docker]: https://github.com/dcm4che/dcm4chee-arc-light/wiki/Running-on-Docker

docs/latest/essentials/getting-started.md

@@ -24,8 +24,7 @@ graphic that illustrates this setup][triangular-workflow].
 Alternatively, if you intend to use the OHIF Viewer as a starting point, and you
 aren't as concerned with syncing updates, then follow these steps:
 
-1. Navigate to the [OHIF/Viewers/tree/react][ohif-viewers-react-repo] repository
-   and branch
+1. Navigate to the [OHIF/Viewers][ohif-viewers] repository
 2. Click `Clone or download`, and then `Download ZIP`
 3. Use the contents of the `.zip` file as a starting point for your viewer
 
@@ -39,6 +38,8 @@ aren't as concerned with syncing updates, then follow these steps:
 
 - [Node.js & NPM](https://nodejs.org/en/)
 - [Yarn](https://yarnpkg.com/en/)
+- Yarn workspaces should be enabled:
+  - `yarn config set workspaces-experimental true`
 
 ### Kick the tires
 
@@ -50,21 +51,18 @@ following commands:
 yarn install
 
 # Start local development server
-yarn start
+yarn run dev
 ```
 
 You should see the following output:
 
 ```bash
-Compiled successfully!
+@ohif/viewer: i ｢wds｣: Project is running at http://localhost:3000/
+@ohif/viewer: i ｢wds｣: webpack output is served from /
+@ohif/viewer: i ｢wds｣: Content not from webpack is served from D:\code\ohif\Viewers\platform\viewer
+@ohif/viewer: i ｢wds｣: 404s will fallback to /index.html
 
-You can now view ohif-viewer in the browser.
-
-  Local:            http://localhost:3000/
-  On Your Network:  http://10.74.20.83:3000/
-
-Note that the development build is not optimized.
-To create a production build, use yarn build.
+# And a list of all generated files
 ```
 
 ### 🎉 Celebrate 🎉
@@ -81,15 +79,17 @@ To create a production build, use yarn build.
 
 ```bash
 # Build static assets to host a PWA
-yarn run build:web
+yarn run build
 
-# Build packaged output
+# Build packaged output (script-tag use)
 yarn run build:package
 ```
 
 ## Next Steps
 
-...
+Take a look at the sidebar. Depending on how you intend to use The OHIF Viewer,
+different topics may be more pertinent than others. At a minimum, reading "The
+Essentials" and the deployment recipes should be a good starting point.
 
 ## Troubleshooting
 
@@ -111,5 +111,5 @@ yarn run build:package
 [sync-changes]: https://help.github.com/en/articles/syncing-a-fork
 [triangular-workflow]: https://github.blog/2015-07-29-git-2-5-including-multiple-worktrees-and-triangular-workflows/#improved-support-for-triangular-workflows
 [ohif-viewers-repo]: https://github.com/OHIF/Viewers
-[ohif-viewers-react-repo]: https://github.com/OHIF/Viewers/tree/react
+[ohif-viewers]: https://github.com/OHIF/Viewers
 <!-- prettier-ignore-end -->

docs/latest/essentials/installation.md

@@ -5,38 +5,52 @@ processes:
 
 ```bash
 # Static Asset output: For deploying PWAs
-yarn run build:web
+yarn run build
 
 # Single `.js` script, for embedding viewer into existing apps
 yarn run build:package
 ```
 
-## create-react-app (PWA)
+## Progressive Web Application (PWA)
 
-> [create-react-app](https://github.com/facebook/create-react-app) provides
-> pre-configured build process for developing front-end applications with
-> [React](https://reactjs.org/).
+> [Progressive Web Apps][pwa] are a new breed of web applications that meet the
+> [following requirements][pwa-checklist]. Notably, targeting a PWA allows us
+> provide a reliable, fast, and engaging experience across different devices and
+> network conditions.
 
-The ohif-viewer package can be run as a create-react-app application. This is
-useful for development, debugging, or evolving the OHIF Viewer into your own
-custom imaging application.
+The OHIF Viewer is maintained as a [monorepo][monorepo]. We use WebPack to build
+the many small static assets that comprise our application. Also generated is an
+`index.html` that will serve as an entry point for loading configuration and the
+application, as well as a `service-worker` that can intelligently cache files so
+that subsequent requests are from the local file system instead of over the
+network.
 
 You can read more about this particular strategy in our
 [Build for Production Deployment Guide](./../deployment/recipes/build-for-production.md)
 
-## Rollup (Packaged Script)
+## Commonjs Bundle (Packaged Script)
 
-> [Rollup](https://rollupjs.org/guide/en) is a module bundler for JavaScript. It
-> uses the new standardized format for code modules included in the ES6 revision
-> of JavaScript.
+The [@ohif/viewer][viewer-npm] package is built with WebPack to provide a React
+component that can be dropped into a larger application. The `OHIFViewer`
+component is the entire viewer, configurable via React `props`. This is useful
+for including the OHIF Viewer in a larger web application, as the entire
+application can be provided via a `<script>` tag with no build process required.
 
-The [ohif-viewer](https://www.npmjs.com/package/ohif-viewer) package can be
-built with Rollup to provide a set of React components which can be dropped into
-a larger application. Specifically, the ohif-viewer package provides a React
-component named `OHIFViewer` which is the entire viewer, configurable via React
-`props`. This is useful for including the OHIF Viewer in a larger web
-application, as the entire application can be provided via a `<script>` tag with
-no build process required.
+The bundle is not as performant or as optimized as the PWA build. It includes
+fonts, styles, and the core extensions. If you find yourself facing performance
+issues, you may wish to tweak what's included in this bundle or switch to the
+PWA build.
 
 You can read more about this particular strategy in our
 [Embedded Viewer Deployment Guide](./../deployment/recipes/embedded-viewer.md)
+
+<!--
+  Links
+  -->
+
+<!-- prettier-ignore-start -->
+[pwa]: https://developers.google.com/web/progressive-web-apps/
+[pwa-checklist]: https://developers.google.com/web/progressive-web-apps/checklist
+[monorepo]: https://github.com/OHIF/Viewers/issues/768
+[viewer-npm]: https://www.npmjs.com/package/@ohif/viewer
+<!-- prettier-ignore-end -->

docs/latest/essentials/themeing.md

@@ -4,7 +4,7 @@ Themeing is currently accomplished with color variables that are defined within
 the [`:root`](https://css-tricks.com/almanac/selectors/r/root/) selector
 (allowing them to cascade across all elements). This repository's components,
 and the ones we consume from our
-[React Viewerbase component library](https://react.ohif.org/styling-and-theming)
+[`@ohif/ui` component library](https://react.ohif.org/styling-and-theming)
 utilize them. We are interested in pursuing more robust themeing options, and
 open to pull requests and discussion issues.
 
@@ -80,12 +80,12 @@ function RadicalImagingLogo() {
       href: 'http://radicalimaging.com',
     },
     React.createElement('h5', {}, 'RADICAL IMAGING')
-  )
+  );
 }
 
 props.whiteLabelling = {
   logoComponent: RadicalImagingLogo(),
-}
+};
 ```
 
 <!--

docs/latest/essentials/translating.md

@@ -145,8 +145,8 @@ becomes a new namespace automatically.
 - CineDialog: Translations for the toll tips inside the Cine Player Dialog
 - Common: all common jargons that can be reused like `t('$t(common:image)')`
 - Header: translations related to OHIF's Header Top Bar
-- MeasurementTable - Translations for the react-viewerbase Measurement Table
-- UserPreferencesModal - Translations for the react-viewerbase Preferences Modal
+- MeasurementTable - Translations for the `@ohif/ui` Measurement Table
+- UserPreferencesModal - Translations for the `@ohif/ui` Preferences Modal
 
 ### How to use another NameSpace inside the current NameSpace?
 

docs/latest/frequently-asked-questions.md

@@ -19,8 +19,8 @@ Follow the steps outlined in the [Bug Report Template][bug-report-template].
 At the moment we are in the process of defining our roadmap and will do our best
 to communicate this to the community. If your requested feature is on the
 roadmap, then it will most likely be built at some point. If it is not, you are
-welcome to build it yourself and [contribute it](contributing.md). If you have
-resources and would like to fund the development of a feature, please
+welcome to build it yourself and [contribute it](contributing/index.md). If you
+have resources and would like to fund the development of a feature, please
 [contact us](http://www.ohif.org) or work with community members that offer
 [consulting services][commercial-support].
 
@@ -54,7 +54,7 @@ for a product built using the platform.
 If you have gone this route (or are going there), please let us know because we
 would be interested to hear about your experience.
 
-### Is The OHIF Viewer [HIPAA][hipaa] Compliant?
+### Is The OHIF Viewer [HIPAA][hipaa-def] Compliant?
 
 **NO.** The OHIF Viewer **DOES NOT** fulfill all of the criteria to become HIPAA
 Compliant. It is the users responsibility to ensure compliance with applicable
@@ -75,7 +75,7 @@ rules and regulations.
 <!-- OTHER -->
 [501k-clearance]: https://www.fda.gov/MedicalDevices/DeviceRegulationandGuidance/HowtoMarketYourDevice/PremarketSubmissions/PremarketNotification510k/
 [ce-marking]: https://ec.europa.eu/growth/single-market/ce-marking_en
-[hipaa]: https://en.wikipedia.org/wiki/Health_Insurance_Portability_and_Accountability_Act
+[hipaa-def]: https://en.wikipedia.org/wiki/Health_Insurance_Portability_and_Accountability_Act
 [new-issue]: https://github.com/OHIF/Viewers/issues/new/choose
 [bug-report-template]: https://github.com/OHIF/Viewers/issues/new?assignees=&labels=Bug+Report+%3Abug%3A&template=---bug-report.md&title=
 <!-- prettier-ignore-end -->

docs/latest/help.md

@@ -3,7 +3,7 @@
 We all need a little help sometimes. Don't let a few roadblocks stand in the way
 of you building something awesome.
 
-## Free
+## Community Support
 
 If you're a developer looking to contribute code, documentation, or discussion;
 we are more than happy to help provide clarification and answer questions via
@@ -21,7 +21,7 @@ resources and must be judicious with how we allocate them. If you find yourself
 in this situation and in need of assistance, it may be in your best interest to
 persue paid support.
 
-## Paid / Commercial
+## Commercial Support
 
 The Open Health Imaging Foundation does not offer commercial support, however,
 some community members do offer consulting services:

extensions/cornerstone/.webpack/webpack.prod.js

@@ -1,3 +1,4 @@
+const webpack = require('webpack');
 const merge = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
@@ -29,9 +30,15 @@ module.exports = (env, argv) => {
     },
     output: {
       path: ROOT_DIR,
-      library: 'ohifExtensionCornerstone',
+      library: 'OHIFExtCornerstone',
       libraryTarget: 'umd',
+      libraryExport: 'default',
       filename: pkg.main,
     },
+    plugins: [
+      new webpack.optimize.LimitChunkCountPlugin({
+        maxChunks: 1,
+      }),
+    ],
   });
 };

extensions/cornerstone/CHANGELOG.md

@@ -3,6 +3,154 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.2.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.2.4...@ohif/extension-cornerstone@1.2.5) (2019-09-27)
+
+
+### Bug Fixes
+
+* version bump issue ([#963](https://github.com/OHIF/Viewers/issues/963)) ([e607ed2](https://github.com/OHIF/Viewers/commit/e607ed2)), closes [#962](https://github.com/OHIF/Viewers/issues/962)
+
+
+
+
+
+# [2.0.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.2.2...@ohif/extension-cornerstone@2.0.0) (2019-09-27)
+
+
+### Bug Fixes
+
+* 🐛 Add DicomLoaderService & FileLoaderService to fix SR, PDF, and SEG support in local file and WADO-RS-only use cases ([#862](https://github.com/OHIF/Viewers/issues/862)) ([e7e1a8a](https://github.com/OHIF/Viewers/commit/e7e1a8a)), closes [#838](https://github.com/OHIF/Viewers/issues/838)
+* version bump issue ([#962](https://github.com/OHIF/Viewers/issues/962)) ([c80ea17](https://github.com/OHIF/Viewers/commit/c80ea17))
+
+
+### BREAKING CHANGES
+
+* DICOM Seg
+
+
+
+
+
+# [2.0.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.2.2...@ohif/extension-cornerstone@2.0.0) (2019-09-27)
+
+
+### Bug Fixes
+
+* 🐛 Add DicomLoaderService & FileLoaderService to fix SR, PDF, and SEG support in local file and WADO-RS-only use cases ([#862](https://github.com/OHIF/Viewers/issues/862)) ([e7e1a8a](https://github.com/OHIF/Viewers/commit/e7e1a8a)), closes [#838](https://github.com/OHIF/Viewers/issues/838)
+
+
+### BREAKING CHANGES
+
+* DICOM Seg
+
+
+
+
+
+## [1.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.2.1...@ohif/extension-cornerstone@1.2.2) (2019-09-26)
+
+
+### Bug Fixes
+
+* Add some code splitting for PWA build ([#937](https://github.com/OHIF/Viewers/issues/937)) ([8938035](https://github.com/OHIF/Viewers/commit/8938035))
+
+
+
+
+
+## [1.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.2.0...@ohif/extension-cornerstone@1.2.1) (2019-09-17)
+
+
+### Bug Fixes
+
+* bump cornerstone-tools version in peerDeps ([4afc88c](https://github.com/OHIF/Viewers/commit/4afc88c))
+
+
+
+
+
+# [1.2.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.1.1...@ohif/extension-cornerstone@1.2.0) (2019-09-12)
+
+
+### Features
+
+* **Annotate:** Add annotate tool back to toolbar ([26be967](https://github.com/OHIF/Viewers/commit/26be967))
+
+
+
+
+
+## [1.1.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.1.0...@ohif/extension-cornerstone@1.1.1) (2019-09-12)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+# [1.1.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.0.1...@ohif/extension-cornerstone@1.1.0) (2019-09-12)
+
+
+### Features
+
+* **BidirectionalTool:** Add BidrectionalTool to "more" menu ([#911](https://github.com/OHIF/Viewers/issues/911)) ([e40cbae](https://github.com/OHIF/Viewers/commit/e40cbae))
+* **EraserTool:** add eraserTool to @ohif/extension-cornerstone ([#912](https://github.com/OHIF/Viewers/issues/912)) ([698d274](https://github.com/OHIF/Viewers/commit/698d274))
+
+
+
+
+
+## [1.0.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.0.0...@ohif/extension-cornerstone@1.0.1) (2019-09-10)
+
+
+### Bug Fixes
+
+* simplify runtime-extension usage ([ac5dbda](https://github.com/OHIF/Viewers/commit/ac5dbda))
+
+
+
+
+
+# [1.0.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@0.50.5...@ohif/extension-cornerstone@1.0.0) (2019-09-09)
+
+
+### Features
+
+* 🎸 Upgraded to cornerstoneTools 4.0 ([86adb51](https://github.com/OHIF/Viewers/commit/86adb51))
+
+
+### BREAKING CHANGES
+
+* n
+
+
+
+
+
+## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@0.50.4...@ohif/extension-cornerstone@0.50.5) (2019-09-06)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@0.50.3...@ohif/extension-cornerstone@0.50.4) (2019-09-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+## [0.50.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@0.50.2...@ohif/extension-cornerstone@0.50.3) (2019-09-04)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
 ## [0.50.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@0.50.1...@ohif/extension-cornerstone@0.50.2) (2019-09-04)
 
 

extensions/cornerstone/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-cornerstone",
-  "version": "0.50.2",
+  "version": "1.2.5",
   "description": "OHIF extension for Cornerstone",
   "author": "OHIF",
   "license": "MIT",
@@ -20,9 +20,9 @@
     "access": "public"
   },
   "scripts": {
-    "dev": "webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
+    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
     "dev:cornerstone": "yarn run dev",
-    "build": "webpack --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
     "build:package": "yarn run build",
     "prepublishOnly": "yarn run build",
     "start": "yarn run dev"
@@ -32,14 +32,14 @@
     "@ohif/ui": "^0.50.0",
     "cornerstone-core": "^2.2.8",
     "cornerstone-math": "^0.1.8",
-    "cornerstone-tools": "^3.1.0",
+    "cornerstone-tools": "^4.0.9",
     "cornerstone-wado-image-loader": "^3.0.0",
-    "dcmjs": "^0.3.8",
+    "dcmjs": "^0.6.1",
     "dicom-parser": "^1.8.3",
     "hammerjs": "^2.0.8",
     "prop-types": "^15.6.2",
-    "react": "^15.0.0 || ^16.0.0",
-    "react-dom": "^15.0.0 || ^16.0.0",
+    "react": "^16.8.6",
+    "react-dom": "^16.8.6",
     "react-redux": "^6.0.0",
     "react-resize-detector": "^3.4.0",
     "redux": "^4.0.1"

extensions/cornerstone/src/asyncComponent.js

@@ -0,0 +1,37 @@
+/**
+ * We use this component to leverage "Code Splitting"
+ *
+ * Link: https://serverless-stack.com/chapters/code-splitting-in-create-react-app.html
+ */
+
+import React, { Component } from 'react';
+
+export default function asyncComponent(importComponent) {
+  class AsyncComponent extends Component {
+    constructor(props) {
+      super(props);
+
+      this.state = {
+        component: null,
+      };
+    }
+
+    async componentDidMount() {
+      // Add dynamically loaded component to state
+      const { default: component } = await importComponent();
+
+      this.setState({
+        component: component,
+      });
+    }
+
+    render() {
+      const C = this.state.component;
+
+      // Render the loaded component, or null
+      return C ? <C {...this.props} /> : null;
+    }
+  }
+
+  return AsyncComponent;
+}

extensions/cornerstone/src/handleSegmentationStorage.js

@@ -1,10 +1,10 @@
-import * as dcmjs from "dcmjs";
+import * as dcmjs from 'dcmjs';
 
-import OHIF from "@ohif/core";
-import cornerstone from "cornerstone-core";
-import cornerstoneTools from "cornerstone-tools";
+import OHIF from '@ohif/core';
+import cornerstone from 'cornerstone-core';
+import cornerstoneTools from 'cornerstone-tools';
 
-const { StackManager } = OHIF.utils;
+const { StackManager, DicomLoaderService } = OHIF.utils;
 
 function getDisplaySet(studies, studyInstanceUid, displaySetInstanceUid) {
   const study = studies.find(
@@ -52,14 +52,6 @@ function addSegMetadataToCornerstoneToolState(
   }
 }
 
-function retrieveDicomData(wadoUri) {
-  // TODO: Authorization header depends on the server. If we ever have multiple servers
-  // we will need to figure out how / when to pass this information in.
-  return fetch(wadoUri, {
-    headers: OHIF.DICOMWeb.getAuthorizationHeader()
-  }).then(response => response.arrayBuffer());
-}
-
 async function handleSegmentationStorage(
   studies,
   studyInstanceUid,
@@ -73,8 +65,11 @@ async function handleSegmentationStorage(
     studyInstanceUid,
     displaySetInstanceUid
   );
-  const segWadoUri = displaySet.images[0].getData().wadouri;
-  const arrayBuffer = await retrieveDicomData(segWadoUri);
+
+  const arrayBuffer = await DicomLoaderService.findDicomDataPromise(
+    displaySet,
+    studies
+  );
   const dicomData = dcmjs.data.DicomMessage.readFile(arrayBuffer);
   const dataset = dcmjs.data.DicomMetaDictionary.naturalizeDataset(
     dicomData.dict
@@ -91,7 +86,7 @@ async function handleSegmentationStorage(
 
   if (displaySets.length > 1) {
     console.warn(
-      "More than one display set with the same seriesInstanceUid. This is not supported yet..."
+      'More than one display set with the same seriesInstanceUid. This is not supported yet...'
     );
   }
 
@@ -100,17 +95,19 @@ async function handleSegmentationStorage(
   const results = parseSeg(arrayBuffer, imageIds);
 
   if (!results) {
-    throw new Error("Fractional segmentations are not supported");
+    throw new Error('Fractional segmentations are not supported');
   }
 
-  const { segMetadata, toolState } = results;
+  const { labelmapBuffer, segMetadata, segmentsOnFrame } = results;
+  const { setters } = cornerstoneTools.getModule('segmentation');
 
-  segMetadata.seriesInstanceUid = seriesInstanceUid;
-
-  addSegMetadataToCornerstoneToolState(
+  setters.labelmap3DByFirstImageId(
+    imageIds[0],
+    labelmapBuffer,
+    0, // TODO -> Can define a color LUT based on colors in the SEG later.
     segMetadata,
-    toolState,
-    displaySetInstanceUid
+    imageIds.length,
+    segmentsOnFrame
   );
 
   const cachedStack = StackManager.findOrCreateStack(
@@ -118,12 +115,13 @@ async function handleSegmentationStorage(
     referenceDisplaySet
   );
   const stack = Object.assign({}, cachedStack);
+
   stack.currentImageIdIndex = 0;
 
   return {
     studyInstanceUid,
     displaySetInstanceUid,
-    stack
+    stack,
   };
 }
 

extensions/cornerstone/src/index.js

@@ -1,7 +1,9 @@
-import OHIFCornerstoneViewport from './OHIFCornerstoneViewport.js';
+import asyncComponent from './asyncComponent.js';
 import commandsModule from './commandsModule.js';
 import toolbarModule from './toolbarModule.js';
 
+const OHIFCornerstoneViewport = asyncComponent(() => import( /* webpackChunkName: "OHIFCornerstoneViewport" */ './OHIFCornerstoneViewport.js'));
+
 /**
  *
  */

extensions/cornerstone/src/toolbarModule.js

@@ -3,8 +3,6 @@
 // - Include SVG Source/Inline?
 // - By URL, or own component?
 
-// TODO: `ohif-core` toolbar builder?
-
 // What KINDS of toolbar buttons do we have...
 // - One's that dispatch commands
 // - One's that set tool's active
@@ -71,6 +69,15 @@ const definitions = [
     commandName: 'setToolActive',
     commandOptions: { toolName: 'Length' },
   },
+  {
+    id: 'ArrowAnnotate',
+    label: 'Annotate',
+    icon: 'measure-non-target',
+    //
+    type: TOOLBAR_BUTTON_TYPES.COMMAND,
+    commandName: 'setToolActive',
+    commandOptions: { toolName: 'ArrowAnnotate' },
+  },
   {
     id: 'Angle',
     label: 'Angle',
@@ -188,6 +195,24 @@ const definitions = [
         type: TOOLBAR_BUTTON_TYPES.COMMAND,
         commandName: 'clearAnnotations',
       },
+      {
+        id: 'Bidirectional',
+        label: 'Bidirectional',
+        icon: 'measure-target',
+        //
+        type: TOOLBAR_BUTTON_TYPES.COMMAND,
+        commandName: 'setToolActive',
+        commandOptions: { toolName: 'Bidirectional' },
+      },
+      {
+        id: 'Eraser',
+        label: 'Eraser',
+        icon: 'eraser',
+        //
+        type: TOOLBAR_BUTTON_TYPES.COMMAND,
+        commandName: 'setToolActive',
+        commandOptions: { toolName: 'Eraser' },
+      },
     ],
   },
 ];

extensions/dicom-html/.webpack/webpack.prod.js

@@ -1,3 +1,4 @@
+const webpack = require('webpack');
 const merge = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
@@ -29,9 +30,15 @@ module.exports = (env, argv) => {
     },
     output: {
       path: ROOT_DIR,
-      library: 'ohifExtensionDicomHtml',
+      library: 'OHIFExtDicomHtml',
       libraryTarget: 'umd',
+      libraryExport: 'default',
       filename: pkg.main,
     },
+    plugins: [
+      new webpack.optimize.LimitChunkCountPlugin({
+        maxChunks: 1,
+      }),
+    ],
   });
 };

extensions/dicom-html/CHANGELOG.md

@@ -3,6 +3,79 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [1.0.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.8...@ohif/extension-dicom-html@1.0.0) (2019-09-27)
+
+
+### Bug Fixes
+
+* 🐛 Add DicomLoaderService & FileLoaderService to fix SR, PDF, and SEG support in local file and WADO-RS-only use cases ([#862](https://github.com/OHIF/Viewers/issues/862)) ([e7e1a8a](https://github.com/OHIF/Viewers/commit/e7e1a8a)), closes [#838](https://github.com/OHIF/Viewers/issues/838)
+
+
+### BREAKING CHANGES
+
+* DICOM Seg
+
+
+
+
+
+## [0.50.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.7...@ohif/extension-dicom-html@0.50.8) (2019-09-26)
+
+
+### Bug Fixes
+
+* Add some code splitting for PWA build ([#937](https://github.com/OHIF/Viewers/issues/937)) ([8938035](https://github.com/OHIF/Viewers/commit/8938035))
+
+
+
+
+
+## [0.50.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.6...@ohif/extension-dicom-html@0.50.7) (2019-09-12)
+
+**Note:** Version bump only for package @ohif/extension-dicom-html
+
+
+
+
+
+## [0.50.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.5...@ohif/extension-dicom-html@0.50.6) (2019-09-10)
+
+
+### Bug Fixes
+
+* simplify runtime-extension usage ([ac5dbda](https://github.com/OHIF/Viewers/commit/ac5dbda))
+
+
+
+
+
+## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.4...@ohif/extension-dicom-html@0.50.5) (2019-09-09)
+
+**Note:** Version bump only for package @ohif/extension-dicom-html
+
+
+
+
+
+## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.3...@ohif/extension-dicom-html@0.50.4) (2019-09-06)
+
+
+### Bug Fixes
+
+* set NODE_ENV for production build ([9120db4](https://github.com/OHIF/Viewers/commit/9120db4))
+
+
+
+
+
+## [0.50.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.2...@ohif/extension-dicom-html@0.50.3) (2019-09-04)
+
+**Note:** Version bump only for package @ohif/extension-dicom-html
+
+
+
+
+
 ## [0.50.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.1...@ohif/extension-dicom-html@0.50.2) (2019-09-04)
 
 

extensions/dicom-html/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-html",
-  "version": "0.50.2",
+  "version": "1.0.0",
   "description": "OHIF extension for rendering structured reports to HTML",
   "author": "OHIF",
   "license": "MIT",
@@ -20,19 +20,19 @@
     "access": "public"
   },
   "scripts": {
-    "dev": "webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
+    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
     "dev:dicom-html": "yarn run dev",
-    "build": "webpack --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
     "build:package": "yarn run build",
     "prepublishOnly": "yarn run build",
     "start": "yarn run dev"
   },
   "peerDependencies": {
     "@ohif/core": "^0.50.0",
-    "dcmjs": "^0.3.3",
+    "dcmjs": "^0.6.1",
     "prop-types": "^15.6.2",
-    "react": "^15.0.0 || ^16.0.0",
-    "react-dom": "^15.0.0 || ^16.0.0"
+    "react": "^16.8.6",
+    "react-dom": "^16.8.6"
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5"

extensions/dicom-html/src/OHIFDicomHtmlViewport.js

@@ -1,46 +1,34 @@
 import React, { Component } from 'react';
 import PropTypes from 'prop-types';
 import DicomHtmlViewport from './DicomHtmlViewport';
+import OHIF from '@ohif/core';
+const { DicomLoaderService } = OHIF.utils;
 
 class OHIFDicomHtmlViewport extends Component {
   static propTypes = {
     studies: PropTypes.object,
     displaySet: PropTypes.object,
-    viewportIndex: PropTypes.number
+    viewportIndex: PropTypes.number,
   };
 
   state = {
     byteArray: null,
-    error: null
+    error: null,
   };
 
   componentDidMount() {
-    const { displaySet } = this.props.viewportData;
-    const {
-      studyInstanceUid,
-      seriesInstanceUid,
-      sopInstanceUid,
-      wadoRoot,
-      wadoUri,
-      authorizationHeaders
-    } = displaySet;
+    const { displaySet, studies } = this.props.viewportData;
 
-    this.retrieveDicomData(
-      studyInstanceUid,
-      seriesInstanceUid,
-      sopInstanceUid,
-      wadoRoot,
-      wadoUri,
-      authorizationHeaders
-    ).then(
-      byteArray => {
+    DicomLoaderService.findDicomDataPromise(displaySet, studies).then(
+      data => {
+        const byteArray = new Uint8Array(data);
         this.setState({
-          byteArray
+          byteArray: byteArray,
         });
       },
       error => {
         this.setState({
-          error
+          error,
         });
 
         throw new Error(error);
@@ -48,27 +36,6 @@ class OHIFDicomHtmlViewport extends Component {
     );
   }
 
-  retrieveDicomData(
-    studyInstanceUid,
-    seriesInstanceUid,
-    sopInstanceUid,
-    wadoRoot,
-    wadoUri,
-    authorizationHeaders
-  ) {
-    // TODO: Passing in a lot of data we aren't using
-
-    // TODO: Authorization header depends on the server. If we ever have multiple servers
-    // we will need to figure out how / when to pass this information in.
-    return fetch(wadoUri, {
-      headers: authorizationHeaders
-    })
-      .then(response => response.arrayBuffer())
-      .then(arraybuffer => {
-        return new Uint8Array(arraybuffer);
-      });
-  }
-
   render() {
     return (
       <>

extensions/dicom-html/src/asyncComponent.js

@@ -0,0 +1,37 @@
+/**
+ * We use this component to leverage "Code Splitting"
+ *
+ * Link: https://serverless-stack.com/chapters/code-splitting-in-create-react-app.html
+ */
+
+import React, { Component } from 'react';
+
+export default function asyncComponent(importComponent) {
+  class AsyncComponent extends Component {
+    constructor(props) {
+      super(props);
+
+      this.state = {
+        component: null,
+      };
+    }
+
+    async componentDidMount() {
+      // Add dynamically loaded component to state
+      const { default: component } = await importComponent();
+
+      this.setState({
+        component: component,
+      });
+    }
+
+    render() {
+      const C = this.state.component;
+
+      // Render the loaded component, or null
+      return C ? <C {...this.props} /> : null;
+    }
+  }
+
+  return AsyncComponent;
+}

extensions/dicom-html/src/index.js

@@ -1,5 +1,11 @@
+import asyncComponent from './asyncComponent.js';
 import OHIFDicomHtmlSopClassHandler from './OHIFDicomHtmlSopClassHandler.js';
-import OHIFDicomHtmlViewport from './OHIFDicomHtmlViewport.js';
+
+const OHIFDicomHtmlViewport = asyncComponent(() =>
+  import(
+    /* webpackChunkName: "OHIFDicomHtmlViewport" */ './OHIFDicomHtmlViewport.js'
+  )
+);
 
 export default {
   /**
@@ -12,5 +18,5 @@ export default {
   },
   getSopClassHandlerModule() {
     return OHIFDicomHtmlSopClassHandler;
-  }
+  },
 };

extensions/dicom-microscopy/.webpack/webpack.prod.js

@@ -1,3 +1,4 @@
+const webpack = require('webpack');
 const merge = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
@@ -29,9 +30,15 @@ module.exports = (env, argv) => {
     },
     output: {
       path: ROOT_DIR,
-      library: 'ohifExtensionDicomMicroscopy',
+      library: 'OHIFExtDicomMicroscopy',
       libraryTarget: 'umd',
+      libraryExport: 'default',
       filename: pkg.main,
     },
+    plugins: [
+      new webpack.optimize.LimitChunkCountPlugin({
+           maxChunks: 1
+       })
+    ]
   });
 };

extensions/dicom-microscopy/CHANGELOG.md

@@ -3,6 +3,36 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.50.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.5...@ohif/extension-dicom-microscopy@0.50.6) (2019-09-26)
+
+
+### Bug Fixes
+
+* Add some code splitting for PWA build ([#937](https://github.com/OHIF/Viewers/issues/937)) ([8938035](https://github.com/OHIF/Viewers/commit/8938035))
+
+
+
+
+
+## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.4...@ohif/extension-dicom-microscopy@0.50.5) (2019-09-10)
+
+
+### Bug Fixes
+
+* simplify runtime-extension usage ([ac5dbda](https://github.com/OHIF/Viewers/commit/ac5dbda))
+
+
+
+
+
+## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.3...@ohif/extension-dicom-microscopy@0.50.4) (2019-09-04)
+
+**Note:** Version bump only for package @ohif/extension-dicom-microscopy
+
+
+
+
+
 ## [0.50.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.50.2...@ohif/extension-dicom-microscopy@0.50.3) (2019-09-04)
 
 

extensions/dicom-microscopy/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-microscopy",
-  "version": "0.50.3",
+  "version": "0.50.6",
   "description": "OHIF extension for Dicom Microscopy",
   "author": "OHIF",
   "license": "MIT",
@@ -20,17 +20,17 @@
     "yarn": ">=1.16.0"
   },
   "scripts": {
-    "dev": "webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
+    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
     "dev:dicom-microscopy": "yarn run dev",
-    "build": "webpack --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
     "build:package": "yarn run build",
     "prepublishOnly": "yarn run build",
     "start": "yarn run dev"
   },
   "peerDependencies": {
     "@ohif/core": "^0.50.0",
-    "react": "^15.0.0 || ^16.0.0",
-    "react-dom": "^15.0.0 || ^16.0.0"
+    "react": "^16.8.6",
+    "react-dom": "^16.8.6"
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",

extensions/dicom-microscopy/src/DicomMicroscopyViewport.js

@@ -1,10 +1,7 @@
 import React, { Component } from 'react';
 import ReactResizeDetector from 'react-resize-detector';
-import { api } from 'dicom-microscopy-viewer';
 import debounce from 'lodash.debounce';
 
-const microscopyViewer = api.VLWholeSlideMicroscopyImageViewer;
-
 class DicomMicroscopyViewport extends Component {
   state = {
     error: null,
@@ -56,9 +53,12 @@ class DicomMicroscopyViewport extends Component {
         }
         return Promise.all(promises);
       })
-      .then(metadata => {
+      .then(async metadata => {
         metadata = metadata.filter(m => m);
 
+        const { api } = await import(/* webpackChunkName: "dicom-microscopy-viewer" */ 'dicom-microscopy-viewer');
+        const microscopyViewer = api.VLWholeSlideMicroscopyImageViewer;
+
         this.viewer = new microscopyViewer({
           client: dicomWebClient,
           metadata,

extensions/dicom-microscopy/src/asyncComponent.js

@@ -0,0 +1,37 @@
+/**
+ * We use this component to leverage "Code Splitting"
+ *
+ * Link: https://serverless-stack.com/chapters/code-splitting-in-create-react-app.html
+ */
+
+import React, { Component } from 'react';
+
+export default function asyncComponent(importComponent) {
+  class AsyncComponent extends Component {
+    constructor(props) {
+      super(props);
+
+      this.state = {
+        component: null,
+      };
+    }
+
+    async componentDidMount() {
+      // Add dynamically loaded component to state
+      const { default: component } = await importComponent();
+
+      this.setState({
+        component: component,
+      });
+    }
+
+    render() {
+      const C = this.state.component;
+
+      // Render the loaded component, or null
+      return C ? <C {...this.props} /> : null;
+    }
+  }
+
+  return AsyncComponent;
+}

extensions/dicom-microscopy/src/index.js

@@ -1,5 +1,11 @@
+import asyncComponent from './asyncComponent.js';
 import DicomMicroscopySopClassHandler from './DicomMicroscopySopClassHandler.js';
-import DicomMicroscopyViewport from './DicomMicroscopyViewport.js';
+
+const DicomMicroscopyViewport = asyncComponent(() =>
+  import(
+    /* webpackChunkName: "DicomMicroscopyViewport" */ './DicomMicroscopyViewport.js'
+  )
+);
 
 export default {
   /**

extensions/dicom-pdf/.webpack/webpack.prod.js

@@ -29,8 +29,9 @@ module.exports = (env, argv) => {
     },
     output: {
       path: ROOT_DIR,
-      library: 'ohifExtensionDicomPdf',
+      library: 'OHIFExtDicomPdf',
       libraryTarget: 'umd',
+      libraryExport: 'default',
       filename: pkg.main,
     },
   });

extensions/dicom-pdf/CHANGELOG.md

@@ -3,6 +3,41 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [1.0.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.50.4...@ohif/extension-dicom-pdf@1.0.0) (2019-09-27)
+
+
+### Bug Fixes
+
+* 🐛 Add DicomLoaderService & FileLoaderService to fix SR, PDF, and SEG support in local file and WADO-RS-only use cases ([#862](https://github.com/OHIF/Viewers/issues/862)) ([e7e1a8a](https://github.com/OHIF/Viewers/commit/e7e1a8a)), closes [#838](https://github.com/OHIF/Viewers/issues/838)
+
+
+### BREAKING CHANGES
+
+* DICOM Seg
+
+
+
+
+
+## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.50.3...@ohif/extension-dicom-pdf@0.50.4) (2019-09-10)
+
+
+### Bug Fixes
+
+* simplify runtime-extension usage ([ac5dbda](https://github.com/OHIF/Viewers/commit/ac5dbda))
+
+
+
+
+
+## [0.50.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.50.2...@ohif/extension-dicom-pdf@0.50.3) (2019-09-04)
+
+**Note:** Version bump only for package @ohif/extension-dicom-pdf
+
+
+
+
+
 ## [0.50.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@0.50.1...@ohif/extension-dicom-pdf@0.50.2) (2019-09-04)
 
 

extensions/dicom-pdf/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-pdf",
-  "version": "0.50.2",
+  "version": "1.0.0",
   "description": "OHIF extension for Dicom PDF",
   "author": "OHIF",
   "license": "MIT",
@@ -20,9 +20,9 @@
     "README.md"
   ],
   "scripts": {
-    "dev": "webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
+    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
     "dev:dicom-pdf": "yarn run dev",
-    "build": "webpack --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
     "build:package": "yarn run build",
     "prepublishOnly": "yarn run build",
     "start": "yarn run dev"
@@ -31,8 +31,8 @@
     "@ohif/core": "^0.50.0",
     "dicom-parser": "^1.8.3",
     "prop-types": "^15.6.2",
-    "react": "^15.0.0 || ^16.0.0",
-    "react-dom": "^15.0.0 || ^16.0.0"
+    "react": "^16.8.6",
+    "react-dom": "^16.8.6"
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",

extensions/dicom-pdf/src/DicomPDFViewport.js

@@ -4,41 +4,46 @@ import TypedArrayProp from './TypedArrayProp';
 
 // TODO: Should probably use dcmjs for this
 const SOP_CLASS_UIDS = {
-  ENCAPSULATED_PDF: '1.2.840.10008.5.1.4.1.1.104.1'
+  ENCAPSULATED_PDF: '1.2.840.10008.5.1.4.1.1.104.1',
 };
 
 class DicomPDFViewport extends Component {
   state = {
     fileURL: null,
-    error: null
+    error: null,
   };
 
   static propTypes = {
-    byteArray: TypedArrayProp.uint8
+    byteArray: TypedArrayProp.uint8,
   };
 
-  renderPDF = dataSet => {
-    const sopClassUid = dataSet.string('x00080016');
+  renderPDF = (dataSet, byteArray) => {
+    let pdfByteArray = byteArray;
 
-    if (sopClassUid !== SOP_CLASS_UIDS.ENCAPSULATED_PDF) {
-      throw new Error('This is not a DICOM-encapsulated PDF');
+    if (dataSet) {
+      const sopClassUid = dataSet.string('x00080016');
+
+      if (sopClassUid !== SOP_CLASS_UIDS.ENCAPSULATED_PDF) {
+        throw new Error('This is not a DICOM-encapsulated PDF');
+      }
+
+      const fileTag = dataSet.elements.x00420011;
+      const offset = fileTag.dataOffset;
+      const remainder = offset + fileTag.length;
+      pdfByteArray = dataSet.byteArray.slice(offset, remainder);
     }
 
-    const fileTag = dataSet.elements.x00420011;
-    const offset = fileTag.dataOffset;
-    const remainder = offset + fileTag.length;
-    const pdfByteArray = dataSet.byteArray.slice(offset, remainder);
     const PDF = new Blob([pdfByteArray], { type: 'application/pdf' });
     const fileURL = URL.createObjectURL(PDF);
 
     this.setState({
-      fileURL
+      fileURL,
     });
   };
 
   parseByteArray = byteArray => {
     const options = {
-      untilTag: ''
+      untilTag: '',
     };
 
     let dataSet;
@@ -47,7 +52,7 @@ class DicomPDFViewport extends Component {
       dataSet = dicomParser.parseDicom(byteArray, options);
     } catch (error) {
       this.setState({
-        error
+        error,
       });
     }
 
@@ -57,7 +62,7 @@ class DicomPDFViewport extends Component {
   componentDidMount() {
     const dataSet = this.parseByteArray(this.props.byteArray);
 
-    this.renderPDF(dataSet);
+    this.renderPDF(dataSet, this.props.byteArray);
   }
 
   render() {

extensions/dicom-pdf/src/OHIFDicomPDFViewport.js

@@ -1,60 +1,54 @@
-import React, { Component } from "react";
-import PropTypes from "prop-types";
-import OHIF from "@ohif/core";
-import OHIFComponentPlugin from "./OHIFComponentPlugin.js";
-import DicomPDFViewport from "./DicomPDFViewport";
+import React, { Component } from 'react';
+import PropTypes from 'prop-types';
+import OHIF from '@ohif/core';
+import OHIFComponentPlugin from './OHIFComponentPlugin.js';
+import DicomPDFViewport from './DicomPDFViewport';
 
-const { DICOMWeb } = OHIF;
+const { DicomLoaderService } = OHIF.utils;
 
 class OHIFDicomPDFViewport extends Component {
   static propTypes = {
     studies: PropTypes.object,
     displaySet: PropTypes.object,
-    viewportIndex: PropTypes.number
+    viewportIndex: PropTypes.number,
   };
 
   state = {
     byteArray: null,
-    error: null
+    error: null,
   };
 
-  static id = "DicomPDFViewportPDF";
+  static id = 'DicomPDFViewportPDF';
 
   static init() {
-    console.log("DicomPDFViewport init()");
+    console.log('DicomPDFViewport init()');
   }
 
   static destroy() {
-    console.log("DicomPDFViewport destroy()");
+    console.log('DicomPDFViewport destroy()');
   }
 
   componentDidMount() {
-    const { displaySet } = this.props.viewportData;
+    const { displaySet, studies } = this.props.viewportData;
     const {
       studyInstanceUid,
       seriesInstanceUid,
       sopInstanceUid,
       wadoRoot,
       wadoUri,
-      authorizationHeaders
+      authorizationHeaders,
     } = displaySet;
 
-    this.retrieveDicomData(
-      studyInstanceUid,
-      seriesInstanceUid,
-      sopInstanceUid,
-      wadoRoot,
-      wadoUri,
-      authorizationHeaders
-    ).then(
-      byteArray => {
+    DicomLoaderService.findDicomDataPromise(displaySet, studies).then(
+      data => {
+        const byteArray = new Uint8Array(data);
         this.setState({
-          byteArray
+          byteArray: byteArray,
         });
       },
       error => {
         this.setState({
-          error
+          error,
         });
 
         throw new Error(error);
@@ -62,27 +56,6 @@ class OHIFDicomPDFViewport extends Component {
     );
   }
 
-  retrieveDicomData(
-    studyInstanceUid,
-    seriesInstanceUid,
-    sopInstanceUid,
-    wadoRoot,
-    wadoUri,
-    authorizationHeaders
-  ) {
-    // TODO: Passing in a lot of data we aren't using
-
-    // TODO: Authorization header depends on the server. If we ever have multiple servers
-    // we will need to figure out how / when to pass this information in.
-    return fetch(wadoUri, {
-      headers: authorizationHeaders
-    })
-      .then(response => response.arrayBuffer())
-      .then(arraybuffer => {
-        return new Uint8Array(arraybuffer);
-      });
-  }
-
   render() {
     const { id, init, destroy } = OHIFDicomPDFViewport;
     const pluginProps = { id, init, destroy };

extensions/vtk/.webpack/webpack.prod.js

@@ -1,3 +1,4 @@
+const webpack = require('webpack');
 const merge = require('webpack-merge');
 const path = require('path');
 const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
@@ -29,9 +30,15 @@ module.exports = (env, argv) => {
     },
     output: {
       path: ROOT_DIR,
-      library: 'ohifExtensionVtk',
+      library: 'OHIFExtVtk',
       libraryTarget: 'umd',
+      libraryExport: 'default',
       filename: pkg.main,
     },
+    plugins: [
+      new webpack.optimize.LimitChunkCountPlugin({
+        maxChunks: 1,
+      }),
+    ],
   });
 };

extensions/vtk/CHANGELOG.md

@@ -3,6 +3,196 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.51.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.1...@ohif/extension-vtk@0.51.2) (2019-10-02)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.51.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.51.0...@ohif/extension-vtk@0.51.1) (2019-10-01)
+
+
+### Bug Fixes
+
+* **rotate:** Use new MPR rotate in react-vtkjs-viewport 0.1.2 ([#964](https://github.com/OHIF/Viewers/issues/964)) ([8503cbc](https://github.com/OHIF/Viewers/commit/8503cbc))
+
+
+
+
+
+# [0.51.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.23...@ohif/extension-vtk@0.51.0) (2019-10-01)
+
+
+### Features
+
+* 🎸 MPR UI improvements. Added MinIP, AvgIP, slab thickness slider and mode toggle ([#947](https://github.com/OHIF/Viewers/issues/947)) ([c79c0c3](https://github.com/OHIF/Viewers/commit/c79c0c3))
+
+
+
+
+
+## [0.50.23](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.22...@ohif/extension-vtk@0.50.23) (2019-10-01)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.22](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.21...@ohif/extension-vtk@0.50.22) (2019-09-27)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.20...@ohif/extension-vtk@0.50.21) (2019-09-27)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.19...@ohif/extension-vtk@0.50.20) (2019-09-26)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.19](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.18...@ohif/extension-vtk@0.50.19) (2019-09-26)
+
+
+### Bug Fixes
+
+* Add some code splitting for PWA build ([#937](https://github.com/OHIF/Viewers/issues/937)) ([8938035](https://github.com/OHIF/Viewers/commit/8938035))
+
+
+
+
+
+## [0.50.18](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.17...@ohif/extension-vtk@0.50.18) (2019-09-23)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.17](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.16...@ohif/extension-vtk@0.50.17) (2019-09-19)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.15...@ohif/extension-vtk@0.50.16) (2019-09-19)
+
+
+### Bug Fixes
+
+* Set transfer function range to data range when loading volumes in VTK ([#930](https://github.com/OHIF/Viewers/issues/930)) ([2341b32](https://github.com/OHIF/Viewers/commit/2341b32))
+
+
+
+
+
+## [0.50.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.14...@ohif/extension-vtk@0.50.15) (2019-09-19)
+
+
+### Bug Fixes
+
+* Bump VTK viewport dependency ([#929](https://github.com/OHIF/Viewers/issues/929)) ([66a0aad](https://github.com/OHIF/Viewers/commit/66a0aad))
+* Stop adding empty labelmap to VTK Viewports for now. Wait until paint tools are implemented ([#926](https://github.com/OHIF/Viewers/issues/926)) ([7f642a0](https://github.com/OHIF/Viewers/commit/7f642a0))
+
+
+
+
+
+## [0.50.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.13...@ohif/extension-vtk@0.50.14) (2019-09-17)
+
+
+### Bug Fixes
+
+* bump cornerstone-tools version in peerDeps ([4afc88c](https://github.com/OHIF/Viewers/commit/4afc88c))
+
+
+
+
+
+## [0.50.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.12...@ohif/extension-vtk@0.50.13) (2019-09-12)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.11...@ohif/extension-vtk@0.50.12) (2019-09-12)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.10...@ohif/extension-vtk@0.50.11) (2019-09-10)
+
+
+### Bug Fixes
+
+* simplify runtime-extension usage ([ac5dbda](https://github.com/OHIF/Viewers/commit/ac5dbda))
+
+
+
+
+
+## [0.50.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.9...@ohif/extension-vtk@0.50.10) (2019-09-10)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.8...@ohif/extension-vtk@0.50.9) (2019-09-10)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.7...@ohif/extension-vtk@0.50.8) (2019-09-09)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.6...@ohif/extension-vtk@0.50.7) (2019-09-06)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [0.50.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.5...@ohif/extension-vtk@0.50.6) (2019-09-04)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
 ## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.50.4...@ohif/extension-vtk@0.50.5) (2019-09-04)
 
 

extensions/vtk/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-vtk",
-  "version": "0.50.5",
+  "version": "0.51.2",
   "description": "OHIF extension for VTK.js",
   "author": "OHIF",
   "license": "MIT",
@@ -21,9 +21,9 @@
     "yarn": ">=1.16.0"
   },
   "scripts": {
-    "dev": "webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
+    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
     "dev:dicom-vtk": "yarn run dev",
-    "build": "webpack --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
     "build:package": "yarn run build",
     "prepublishOnly": "yarn run build",
     "start": "yarn run dev"
@@ -34,7 +34,7 @@
     "@ohif/ui": "^0.50.0",
     "cornerstone-core": "^2.2.8",
     "cornerstone-wado-image-loader": "^3.0.0",
-    "dcmjs": "^0.4.7",
+    "dcmjs": "^0.6.1",
     "dicom-parser": "^1.8.3",
     "i18next": "^17.0.3",
     "i18next-browser-languagedetector": "^3.0.1",
@@ -48,14 +48,14 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",
-    "react-vtkjs-viewport": "0.0.11"
+    "react-vtkjs-viewport": "0.1.2"
   },
   "devDependencies": {
-    "@ohif/core": "^0.50.4",
-    "@ohif/ui": "^0.50.2",
-    "cornerstone-tools": "^3.13.0",
+    "@ohif/core": "^1.0.2",
+    "@ohif/ui": "^0.52.0",
+    "cornerstone-tools": "^4.0.9",
     "cornerstone-wado-image-loader": "^3.0.0",
-    "dcmjs": "^0.5.1",
+    "dcmjs": "^0.6.1",
     "dicom-parser": "^1.8.3",
     "gh-pages": "^2.0.1",
     "i18next": "^17.0.3",

extensions/vtk/src/OHIFVTKViewport.js

@@ -189,6 +189,11 @@ class OHIFVTKViewport extends Component {
     volumeActor.setMapper(volumeMapper);
     volumeMapper.setInputData(data);
 
+    const range = data.getPointData().getScalars().getRange();
+
+    // TODO: For PET we might want to just set this to 0-5 SUV
+    volumeActor.getProperty().getRGBTransferFunction(0).setRange(range[0], range[1]);
+
     // TODO: Should look into implementing autoAdjustSampleDistance in vtk
     const sampleDistance =
       1.2 *
@@ -233,9 +238,11 @@ class OHIFVTKViewport extends Component {
       frameIndex
     );
 
-    if (!labelmap) {
+    // TODO: Temporarily disabling this since it is not yet
+    // being used and hurts performance significantly.
+    /*if (!labelmap) {
       labelmap = createLabelMapImageData(data);
-    }
+    }*/
 
     const volumeActor = this.getOrCreateVolume(data, displaySetInstanceUid);
 

extensions/vtk/src/asyncComponent.js

@@ -0,0 +1,37 @@
+/**
+ * We use this component to leverage "Code Splitting"
+ *
+ * Link: https://serverless-stack.com/chapters/code-splitting-in-create-react-app.html
+ */
+
+import React, { Component } from 'react';
+
+export default function asyncComponent(importComponent) {
+  class AsyncComponent extends Component {
+    constructor(props) {
+      super(props);
+
+      this.state = {
+        component: null,
+      };
+    }
+
+    async componentDidMount() {
+      // Add dynamically loaded component to state
+      const { default: component } = await importComponent();
+
+      this.setState({
+        component: component,
+      });
+    }
+
+    render() {
+      const C = this.state.component;
+
+      // Render the loaded component, or null
+      return C ? <C {...this.props} /> : null;
+    }
+  }
+
+  return AsyncComponent;
+}

extensions/vtk/src/commandsModule.js

@@ -2,6 +2,7 @@ import {
   vtkInteractorStyleMPRCrosshairs,
   vtkInteractorStyleMPRWindowLevel,
   vtkInteractorStyleMPRSlice,
+  vtkInteractorStyleMPRRotate,
   vtkSVGCrosshairsWidget,
   vtkSVGWidgetManager,
 } from 'react-vtkjs-viewport';
@@ -18,6 +19,7 @@ const { BlendMode } = Constants;
 // TODO: Put this somewhere else
 let apis = {};
 let currentSlabThickness = 0.1;
+let defaultSlabThickness = 0.1;
 
 function getCrosshairCallbackForIndex(index) {
   return ({ worldPos }) => {
@@ -98,7 +100,7 @@ function _setView(api, sliceNormal, viewUp) {
   const camera = renderer.getActiveCamera();
   const istyle = renderWindow.getInteractor().getInteractorStyle();
   istyle.setSliceNormal(...sliceNormal);
-  camera.setViewUp(...viewUp);
+  istyle.setViewUp(...viewUp);
 
   renderWindow.render();
 }
@@ -109,14 +111,15 @@ function switchMPRInteractors(api, istyle) {
   const camera = renderer.getActiveCamera();
   const currentIStyle = renderWindow.getInteractor().getInteractorStyle();
 
-  let currentNormal;
-  if (currentIStyle.getSliceNormal && istyle.getSliceNormal) {
-    currentNormal = currentIStyle.getSliceNormal();
+  let currentViewport;
+  if (currentIStyle.getViewport && istyle.getViewport) {
+    currentViewport = currentIStyle.getViewport();
   }
 
   let currentSlabThickness;
   if (currentIStyle.getSlabThickness && istyle.getSlabThickness) {
     currentSlabThickness = currentIStyle.getSlabThickness();
+    defaultSlabThickness = currentSlabThickness;
   }
 
   renderWindow.getInteractor().setInteractorStyle(istyle);
@@ -124,11 +127,11 @@ function switchMPRInteractors(api, istyle) {
   // TODO: Not sure why this is required the second time this function is called
   istyle.setInteractor(renderWindow.getInteractor());
 
-  if (istyle.getVolumeMapper() !== api.volumes[0]) {
-    if (currentNormal) {
-      istyle.setSliceNormal(currentNormal);
-    }
+  if (currentViewport) {
+    istyle.setViewport(currentViewport);
+  }
 
+  if (istyle.getVolumeMapper() !== api.volumes[0]) {
     if (currentSlabThickness) {
       istyle.setSlabThickness(currentSlabThickness);
     }
@@ -161,7 +164,7 @@ const actions = {
   },
   enableRotateTool: () => {
     apis.forEach(api => {
-      const istyle = vtkInteractorStyleMPRSlice.newInstance();
+      const istyle = vtkInteractorStyleMPRRotate.newInstance();
 
       switchMPRInteractors(api, istyle);
     });
@@ -182,7 +185,7 @@ const actions = {
       switchMPRInteractors(api, istyle);
     });
   },
-  setSlabThickness: slabThickness => {
+  setSlabThickness: ({ slabThickness }) => {
     currentSlabThickness = slabThickness;
 
     apis.forEach(api => {
@@ -191,15 +194,6 @@ const actions = {
 
       if (istyle.setSlabThickness) {
         istyle.setSlabThickness(currentSlabThickness);
-
-        // TODO: Do this inside the interactors in a setSlabThickness function instead
-        const renderer = api.genericRenderWindow.getRenderer();
-        const camera = renderer.getActiveCamera();
-        const dist = camera.getDistance();
-        const near = dist - currentSlabThickness / 2;
-        const far = dist + currentSlabThickness / 2;
-
-        camera.setClippingRange(near, far);
       }
 
       renderWindow.render();
@@ -220,6 +214,32 @@ const actions = {
       renderWindow.render();
     });
   },
+  setBlendModeToComposite: () => {
+    apis.forEach(api => {
+      const renderWindow = api.genericRenderWindow.getRenderWindow();
+      const istyle = renderWindow.getInteractor().getInteractorStyle();
+
+      const mapper = api.volumes[0].getMapper();
+      if (mapper.setBlendModeToComposite) {
+        mapper.setBlendModeToComposite();
+      }
+
+      if (istyle.setSlabThickness) {
+        istyle.setSlabThickness(defaultSlabThickness);
+      }
+      renderWindow.render();
+    });
+  },
+  setBlendModeToMaximumIntensity: () => {
+    apis.forEach(api => {
+      const renderWindow = api.genericRenderWindow.getRenderWindow();
+      const mapper = api.volumes[0].getMapper();
+      if (mapper.setBlendModeToMaximumIntensity) {
+        mapper.setBlendModeToMaximumIntensity();
+      }
+      renderWindow.render();
+    });
+  },
   setBlendMode: ({ blendMode }) => {
     apis.forEach(api => {
       const renderWindow = api.genericRenderWindow.getRenderWindow();
@@ -284,18 +304,18 @@ const actions = {
         case 0:
           //Axial
           istyle.setSliceNormal(0, 0, 1);
-          camera.setViewUp(0, -1, 0);
+          istyle.setViewUp(0, -1, 0);
 
           break;
         case 1:
           // sagittal
           istyle.setSliceNormal(1, 0, 0);
-          camera.setViewUp(0, 0, 1);
+          istyle.setViewUp(0, 0, 1);
           break;
         case 2:
           // Coronal
           istyle.setSliceNormal(0, 1, 0);
-          camera.setViewUp(0, 0, 1);
+          istyle.setViewUp(0, 0, 1);
           break;
       }
 
@@ -338,12 +358,12 @@ const definitions = {
     options: {},
   },
   setBlendModeToComposite: {
-    commandFn: actions.setBlendMode,
+    commandFn: actions.setBlendModeToComposite,
     storeContexts: [],
     options: { blendMode: BlendMode.COMPOSITE_BLEND },
   },
   setBlendModeToMaximumIntensity: {
-    commandFn: actions.setBlendMode,
+    commandFn: actions.setBlendModeToMaximumIntensity,
     storeContexts: [],
     options: { blendMode: BlendMode.MAXIMUM_INTENSITY_BLEND },
   },

extensions/vtk/src/index.js

@@ -1,9 +1,13 @@
-import OHIFVTKViewport from './OHIFVTKViewport.js';
+import asyncComponent from './asyncComponent.js';
 import commandsModule from './commandsModule.js';
 import toolbarModule from './toolbarModule.js';
 // This feels weird
 // import loadLocales from './loadLocales';
 
+const OHIFVTKViewport = asyncComponent(() =>
+  import(/* webpackChunkName: "OHIFVTKViewport" */ './OHIFVTKViewport.js')
+);
+
 const vtkExtension = {
   /**
    * Only required property. Should be a unique value across all extensions.

extensions/vtk/src/toolbarComponents/SlabThicknessToolbarComponent.js

@@ -0,0 +1,207 @@
+import React, { useState, useEffect } from 'react';
+import PropTypes from 'prop-types';
+import classnames from 'classnames';
+import { Range, Checkbox, Select } from '@ohif/ui';
+
+import './slab-thickness-toolbar-button.styl';
+
+const SLIDER = {
+  MIN: 0.1,
+  MAX: 1000,
+  STEP: 0.1,
+};
+
+const ToolbarLabel = props => {
+  const { label } = props;
+  return <div className="toolbar-button-label">{label}</div>;
+};
+
+const ToolbarSlider = props => {
+  const { value, min, max, onChange } = props;
+  return (
+    <div className="toolbar-slider-container">
+      <label htmlFor="toolbar-slider">{value}mm</label>
+      <Range
+        value={value}
+        min={min}
+        max={max}
+        step={SLIDER.STEP}
+        onChange={onChange}
+        id="toolbar-slider"
+      />
+    </div>
+  );
+};
+
+const _getSelectOptions = button => {
+  return button.operationButtons.map(button => {
+    return {
+      key: button.label,
+      value: button.id,
+    };
+  });
+};
+
+const _getClassNames = (isActive, className) => {
+  return classnames('toolbar-button', 'slab-thickness', className, {
+    active: isActive,
+  });
+};
+
+const _applySlabThickness = (
+  value,
+  modeChecked,
+  toolbarClickCallback,
+  button
+) => {
+  if (!modeChecked || !toolbarClickCallback) {
+    return;
+  }
+
+  const { actionButton } = button;
+
+  const generateOperation = (operation, value) => {
+    // Combine slider value into slider operation
+    const generatedOperation = { ...operation };
+    generatedOperation.commandOptions = {
+      ...operation.commandOptions,
+      slabThickness: value,
+    };
+
+    return generatedOperation;
+  };
+
+  const operation = generateOperation(actionButton, value);
+  toolbarClickCallback(operation, event);
+};
+
+const _applyModeOperation = (
+  operation,
+  modeChecked,
+  toolbarClickCallback,
+  button
+) => {
+  // in case modeChecked has not being triggered by user yet
+  if (typeof modeChecked !== 'boolean') {
+    return;
+  }
+
+  const { deactivateButton } = button;
+
+  const _operation = modeChecked ? operation : deactivateButton;
+  if (toolbarClickCallback && _operation) {
+    toolbarClickCallback(_operation);
+  }
+};
+
+const _getInitialState = currentSelectedOption => {
+  return {
+    value: SLIDER.MIN,
+    sliderMin: SLIDER.MIN,
+    sliderMax: SLIDER.MAX,
+    modeChecked: undefined,
+    operation: currentSelectedOption,
+  };
+};
+
+const INITIAL_OPTION_INDEX = 0;
+const _getInitialtSelectedOption = (button = {}) => {
+  return (
+    button.operationButtons && button.operationButtons[INITIAL_OPTION_INDEX]
+  );
+};
+
+function SlabThicknessToolbarComponent({
+  parentContext,
+  toolbarClickCallback,
+  button,
+  activeButtons,
+  isActive,
+  className,
+}) {
+  const currentSelectedOption = _getInitialtSelectedOption(button);
+  const [state, setState] = useState(_getInitialState(currentSelectedOption));
+  const { label, operationButtons } = button;
+  const _className = _getClassNames(isActive, className);
+  const selectOptions = _getSelectOptions(button);
+  function onChangeSelect(selectedValue) {
+    // find select value
+    const operation = operationButtons.find(
+      button => button.id === selectedValue
+    );
+
+    if (operation === state.operation) {
+      return;
+    }
+
+    setState({ ...state, operation });
+  }
+
+  function onChangeCheckbox(checked) {
+    setState({ ...state, modeChecked: checked });
+  }
+
+  function onChangeSlider(event) {
+    const value = Number(event.target.value);
+
+    if (value !== state.value) {
+      setState({ ...state, value, modeChecked: true });
+    }
+  }
+
+  useEffect(() => {
+    _applyModeOperation(
+      state.operation,
+      state.modeChecked,
+      toolbarClickCallback,
+      button
+    );
+  }, [state.modeChecked, state.operation]);
+
+  useEffect(() => {
+    _applySlabThickness(
+      state.value,
+      state.modeChecked,
+      toolbarClickCallback,
+      button
+    );
+  }, [state.operation, state.modeChecked, state.value]);
+
+  return (
+    <div className={_className}>
+      <div className="container">
+        <ToolbarSlider
+          value={state.value}
+          min={state.sliderMin}
+          max={state.sliderMax}
+          onChange={onChangeSlider}
+        />
+        <ToolbarLabel key="toolbar-label" label={label} />
+      </div>
+      <div className="controller">
+        <Checkbox
+          label="mode"
+          checked={state.modeChecked}
+          onChange={onChangeCheckbox}
+        ></Checkbox>
+        <Select
+          key="toolbar-select"
+          options={selectOptions}
+          value={selectOptions[INITIAL_OPTION_INDEX].value}
+          onChange={onChangeSelect}
+        ></Select>
+      </div>
+    </div>
+  );
+}
+
+SlabThicknessToolbarComponent.propTypes = {
+  parentContext: PropTypes.object.isRequired,
+  toolbarClickCallback: PropTypes.func.isRequired,
+  button: PropTypes.object.isRequired,
+  activeButtons: PropTypes.array.isRequired,
+  isActive: PropTypes.bool,
+  className: PropTypes.string,
+};
+
+export default SlabThicknessToolbarComponent;

extensions/vtk/src/toolbarComponents/slab-thickness-toolbar-button.styl

@@ -0,0 +1,55 @@
+.slab-thickness
+  display: flex;
+  flex-direction: row;
+  align-items: flex-end;
+  height: 60px;
+  margin-top: -12px;
+  &:hover
+    color: var(--default-color);
+  .container
+    padding-right: 10px;
+    height: inherit;
+    display: flex;
+    flex-direction: column;
+    justify-content: space-between;
+    .toolbar-slider-container
+      width: 80px;
+      margin: 0px 2px 2px 2px;
+      font-size: 12px;
+      &:hover
+        color: var(--hover-color);
+      input
+        height: 20px;
+        padding-top: 6px;
+        &::-moz-range-thumb
+          height: 16px;
+          margin-top: -7px;
+        &::-webkit-slider-thumb
+          height: 16px;
+          margin-top: -7px;
+  .controller
+    width: 62px;
+    .ohif-check-container
+      margin-bottom: 5px;
+      padding-left: 18px;
+      .ohif-check-label
+        text-transform: capitalize;
+        &:hover
+          color: var(--hover-color);
+        .ohif-checkbox
+          border-radius: 3px;
+          background-color: white;
+          width: 12px;
+          height: 12px;
+          top: 22%;
+          &.ohif-checked:after
+            background-color: var(--active-color);
+            top: 17%;
+            left: 17%;
+    .select-ohif
+      color: var(--default-color);
+      border-color: var(--default-color);
+      background-color: black;
+      background-image: url('data:image/svg+xml;charset=US-ASCII,%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%22292.4%22%20height%3D%22292.4%22%3E%3Cpath%20fill%3D%22%23007CB2%22%20d%3D%22M287%2069.4a17.6%2017.6%200%200%200-13-5.4H18.4c-5%200-9.3%201.8-12.9%205.4A17.6%2017.6%200%200%200%200%2082.2c0%205%201.8%209.3%205.4%2012.9l128%20127.9c3.6%203.6%207.8%205.4%2012.8%205.4s9.2-1.8%2012.8-5.4L287%2095c3.5-3.5%205.4-7.8%205.4-12.8%200-5-1.9-9.2-5.5-12.8z%22%2F%3E%3C%2Fsvg%3E');
+      &:hover
+        color: var(--hover-color);

extensions/vtk/src/toolbarModule.js

@@ -1,3 +1,5 @@
+import SlabThicknessToolbarComponent from './toolbarComponents/SlabThicknessToolbarComponent';
+
 const TOOLBAR_BUTTON_TYPES = {
   COMMAND: 'command',
   SET_TOOL_ACTIVE: 'setToolActive',
@@ -31,6 +33,7 @@ const definitions = [
     commandName: 'enableRotateTool',
     commandOptions: {},
   },
+  /*
   {
     id: 'setBlendModeToComposite',
     label: 'Disable MIP',
@@ -68,6 +71,50 @@ const definitions = [
     commandName: 'decreaseSlabThickness',
     commandOptions: {},
   },
+  */
+  {
+    id: 'changeSlabThickness',
+    label: 'Slab Thickness',
+    icon: 'soft-tissue',
+    CustomComponent: SlabThicknessToolbarComponent,
+    commandName: 'setSlabThickness',
+    actionButton: {
+      id: 'setSlabThickness',
+      label: 'slider',
+      type: TOOLBAR_BUTTON_TYPES.COMMAND,
+      commandName: 'setSlabThickness',
+      commandOptions: {},
+    },
+    deactivateButton: {
+      id: 'setBlendModeToComposite',
+      type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
+      commandName: 'setBlendModeToComposite',
+      commandOptions: {},
+    },
+    operationButtons: [
+      {
+        id: 'setBlendModeToMaximumIntensity',
+        label: 'MIP',
+        type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
+        commandName: 'setBlendModeToMaximumIntensity',
+        commandOptions: {},
+      },
+      {
+        id: 'setBlendModeToMinimumIntensity',
+        label: 'MinIP',
+        type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
+        commandName: 'setBlendModeToMinimumIntensity',
+        commandOptions: {},
+      },
+      {
+        id: 'setBlendModeToAverageIntensity',
+        label: 'AvgIP',
+        type: TOOLBAR_BUTTON_TYPES.SET_TOOL_ACTIVE,
+        commandName: 'setBlendModeToAverageIntensity',
+        commandOptions: {},
+      },
+    ],
+  },
 ];
 
 export default {

netlify.toml

@@ -3,7 +3,7 @@
 # TOML Reference:
 # https://www.netlify.com/docs/netlify-toml-reference/
 #
-# We use Netlify for deploy previews and deploy previews only.
+# We use Netlify for deploy previews and for publishing docs (gh-pages branch).
 # https://viewer.ohif.org is created using a different process that is
 # managed by CircleCI and deployed to our Google Hosting
 #
@@ -40,25 +40,6 @@
   publish = ".netlify/www/"
   command = "yarn config set workspaces-experimental true && chmod +x .netlify/build-deploy-preview.sh && .netlify/build-deploy-preview.sh"
 
-# Redirects and headers are GLOBAL for all builds – they do not get scoped to
-# contexts no matter where you define them in the file.
-# For context-specific rules, use _headers or _redirects files, which are
-# PER-DEPLOY.
-# The following redirect is intended for use with most SPAs that handle
-# routing internally.
-# By default, redirects won't be applied if there's a file with the same
-# path as the one defined in the `from` property. Setting `force` to `true`
-# will make the redirect rule take precedence over any existing files.
-[[redirects]]
-  from = "/*"
-  to = "/index.html"
-  status = 200
-
-[[redirects]]
-  from = "/pwa/*"
-  to = "/pwa/index.html"
-  status = 200
-
 [[headers]]
   # Define which paths this specific [[headers]] block will cover.
   for = "/*"

package.json

@@ -12,21 +12,28 @@
   },
   "scripts": {
     "cm": "npx git-cz",
-    "dev": "lerna run dev:viewer --stream",
-    "dev:project": ".scripts/dev.sh",
     "build": "lerna run build:viewer --stream",
+    "build:e2e": "lerna run build:viewer:e2e --stream",
     "build:ci": "lerna run build:viewer:ci --stream",
     "build:demo": "lerna run build:viewer:demo --stream",
     "build:package": "lerna run build:viewer:package --stream",
     "build:package-all": "lerna run build:package --parallel --stream",
+    "dev": "lerna run dev:viewer --stream",
+    "dev:project": ".scripts/dev.sh",
+    "dev:orthanc": "lerna run dev:orthanc --stream",
+    "orthanc:up": "docker-compose -f .docker/Nginx-Orthanc/docker-compose.yml up",
+    "start": "yarn run dev",
     "test": "yarn run test:unit",
     "test:unit": "jest --collectCoverage",
     "test:unit:ci": "lerna run test:unit:ci --parallel --stream",
+    "test:e2e": "lerna run test:e2e --stream",
+    "test:e2e:dist": "lerna run test:e2e:dist --stream",
     "see-changed": "lerna changed",
     "docs:publish": "chmod +x ./build-and-publish-docs.sh && ./build-and-publish-docs.sh",
     "release": "yarn run lerna:version && yarn run lerna:publish",
     "lerna:version": "npx lerna version prerelease --force-publish",
-    "lerna:publish": "lerna publish from-package --canary --dist-tag canary"
+    "lerna:publish": "lerna publish from-package --canary --dist-tag canary",
+    "link-list": "npm ls --depth=0 --link=true"
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",
@@ -76,13 +83,15 @@
     "react-dom": "^16.8.6",
     "react-hot-loader": "^4.12.11",
     "redux-testkit": "^1.0.6",
+    "serve": "^11.1.0",
     "shader-loader": "^1.3.1",
+    "start-server-and-test": "^1.10.0",
     "style-loader": "^1.0.0",
     "stylelint": "^10.1.0",
     "stylelint-config-recommended": "^2.2.0",
     "stylus": "^0.54.5",
     "stylus-loader": "^3.0.2",
-    "terser-webpack-plugin": "^1.4.1",
+    "terser-webpack-plugin": "^2.1.0",
     "webpack": "^4.35.2",
     "webpack-cli": "^3.3.5",
     "webpack-dev-server": "^3.7.2",
@@ -91,6 +100,17 @@
     "workbox-webpack-plugin": "^4.3.1",
     "worker-loader": "^2.0.0"
   },
+  "husky": {
+    "hooks": {
+      "pre-commit": "lint-staged"
+    }
+  },
+  "lint-staged": {
+    "src/**/*.{js,json,css}": [
+      "prettier --write",
+      "git add"
+    ]
+  },
   "resolutions": {
     "**/@babel/runtime": "7.5.5"
   }

platform/core/CHANGELOG.md

@@ -3,6 +3,101 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.0.2](https://github.com/OHIF/Viewers/compare/@ohif/core@1.0.1...@ohif/core@1.0.2) (2019-10-02)
+
+
+### Bug Fixes
+
+* Temporarily sort SEG files to the end of the display set list as a workaround for several metadata issues ([#987](https://github.com/OHIF/Viewers/issues/987)) ([b3b4c10](https://github.com/OHIF/Viewers/commit/b3b4c10))
+
+
+
+
+
+## [1.0.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.0.0...@ohif/core@1.0.1) (2019-09-27)
+
+
+### Bug Fixes
+
+* Check for Value in 00081155 sequence (Few patient protocol images doesn't have this value) and removed a duplicate declaration ([#921](https://github.com/OHIF/Viewers/issues/921)) ([d0ec9cf](https://github.com/OHIF/Viewers/commit/d0ec9cf))
+
+
+
+
+
+# [1.0.0](https://github.com/OHIF/Viewers/compare/@ohif/core@0.50.10...@ohif/core@1.0.0) (2019-09-27)
+
+
+### Bug Fixes
+
+* 🐛 Add DicomLoaderService & FileLoaderService to fix SR, PDF, and SEG support in local file and WADO-RS-only use cases ([#862](https://github.com/OHIF/Viewers/issues/862)) ([e7e1a8a](https://github.com/OHIF/Viewers/commit/e7e1a8a)), closes [#838](https://github.com/OHIF/Viewers/issues/838)
+
+
+### BREAKING CHANGES
+
+* DICOM Seg
+
+
+
+
+
+## [0.50.10](https://github.com/OHIF/Viewers/compare/@ohif/core@0.50.9...@ohif/core@0.50.10) (2019-09-23)
+
+
+### Bug Fixes
+
+* Avoid using variable name "module" ([#942](https://github.com/OHIF/Viewers/issues/942)) ([72427fe](https://github.com/OHIF/Viewers/commit/72427fe)), closes [#940](https://github.com/OHIF/Viewers/issues/940)
+
+
+
+
+
+## [0.50.9](https://github.com/OHIF/Viewers/compare/@ohif/core@0.50.8...@ohif/core@0.50.9) (2019-09-17)
+
+
+### Bug Fixes
+
+* bump cornerstone-tools version in peerDeps ([4afc88c](https://github.com/OHIF/Viewers/commit/4afc88c))
+
+
+
+
+
+## [0.50.8](https://github.com/OHIF/Viewers/compare/@ohif/core@0.50.7...@ohif/core@0.50.8) (2019-09-10)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [0.50.7](https://github.com/OHIF/Viewers/compare/@ohif/core@0.50.6...@ohif/core@0.50.7) (2019-09-10)
+
+
+### Bug Fixes
+
+* remove requestOptions when key is not needed ([32bc47d](https://github.com/OHIF/Viewers/commit/32bc47d))
+
+
+
+
+
+## [0.50.6](https://github.com/OHIF/Viewers/compare/@ohif/core@0.50.5...@ohif/core@0.50.6) (2019-09-09)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/core@0.50.4...@ohif/core@0.50.5) (2019-09-04)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
 ## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/core@0.50.3...@ohif/core@0.50.4) (2019-09-04)
 
 

platform/core/README.md

@@ -35,7 +35,7 @@ can be used with Vue, React, Vanilla JS, or any number of other frameworks.
 
 The documentation for this library is sparse. The best way to get started is to
 look at its
-[top level exports](https://github.com/OHIF/ohif-core/blob/master/src/index.js),
+[top level exports](https://github.com/OHIF/Viewers/blob/master/platform/core/src/index.js),
 and explore the source code of features that interest you. If you want to see
 how we use this library, you can check out [our viewer
 implementation][react-viewer].
@@ -57,12 +57,12 @@ yarn add @ohif/core --exact
 ### Usage
 
 Usage is dependent on the feature(s) you want to leverage. The bulk of
-`ohif-core`'s features are "pure" and can be imported and used in place.
+`@ohif/core`'s features are "pure" and can be imported and used in place.
 
 _Example: retrieving study metadata from a server_
 
 ```js
-import { studies } from "@ohif/core";
+import { studies } from '@ohif/core';
 
 const studiesMetadata = await studies.retrieveStudiesMetadata(
   server, // Object
@@ -125,11 +125,10 @@ Links:
 
 <!-- prettier-ignore-start -->
 <!-- ROW -->
-[npm-url]: https://npmjs.org/package/ohif-core
-[npm-downloads-image]: https://img.shields.io/npm/dm/ohif-core.svg?style=flat-square
-[npm-version-image]: https://img.shields.io/npm/v/ohif-core.svg?style=flat-square
+[npm-url]: https://npmjs.org/package/@ohif/core
+[npm-downloads-image]: https://img.shields.io/npm/dm/@ohif/core.svg?style=flat-square
+[npm-version-image]: https://img.shields.io/npm/v/@ohif/core.svg?style=flat-square
 [all-contributors-image]: https://img.shields.io/badge/all_contributors-0-orange.svg?style=flat-square
-[contributing-url]: https://github.com/OHIF/ohif-core/blob/master/CONTRIBUTING.md
 [license-image]: https://img.shields.io/badge/license-MIT-blue.svg?style=flat-square
 [license-url]: LICENSE
 <!-- Misc. -->

platform/core/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/core",
-  "version": "0.50.4",
+  "version": "1.0.2",
   "description": "Generic business logic for web-based medical imaging applications",
   "author": "OHIF Core Team",
   "license": "MIT",
@@ -23,7 +23,7 @@
   "scripts": {
     "dev": "jest --watchAll",
     "dev:core": "yarn run dev",
-    "build": "webpack --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
     "build:package": "yarn run build",
     "prepublishOnly": "yarn run build",
     "start": "yarn run dev",
@@ -32,7 +32,7 @@
   },
   "peerDependencies": {
     "cornerstone-core": "^2.2.8",
-    "cornerstone-tools": "^3.9.0",
+    "cornerstone-tools": "^4.0.9",
     "cornerstone-wado-image-loader": "^3.0.0",
     "dicom-parser": "^1.8.3"
   },

platform/core/src/DICOMWeb/getAuthorizationHeader.js

@@ -6,17 +6,21 @@ import user from '../user';
 /**
  * Returns the Authorization header as part of an Object.
  *
- * @returns {Object}
+ * @export
+ * @param {Object} [server={}]
+ * @param {Object} [server.requestOptions]
+ * @param {string} [server.requestOptions.auth]
+ * @returns {Object} { Authorization }
  */
-export default function getAuthorizationHeader(server) {
+export default function getAuthorizationHeader({ requestOptions } = {}) {
   const headers = {};
 
   // Check for OHIF.user since this can also be run on the server
   const accessToken = user && user.getAccessToken && user.getAccessToken();
 
-  if (server && server.requestOptions && server.requestOptions.auth) {
+  if (requestOptions && requestOptions.auth) {
     // HTTP Basic Auth (user:password)
-    headers.Authorization = `Basic ${btoa(server.requestOptions.auth)}`;
+    headers.Authorization = `Basic ${btoa(requestOptions.auth)}`;
   } else if (accessToken) {
     headers.Authorization = `Bearer ${accessToken}`;
   }

platform/core/src/classes/metadata/StudyMetadata.js

@@ -129,6 +129,7 @@ export class StudyMetadata extends Metadata {
         );
 
         if (displaySet) {
+          displaySet.sopClassModule = true;
           displaySets.push(displaySet);
 
           return;
@@ -196,6 +197,7 @@ export class StudyMetadata extends Metadata {
 
     // TODO
     displaySets.sort(_sortBySeriesNumber);
+    displaySets.sort(_sortSegToEndOfList);
 
     return displaySets;
   }
@@ -214,7 +216,7 @@ export class StudyMetadata extends Metadata {
    * @returns {boolean} True on success, false on failure.
    */
   addDisplaySet(displaySet) {
-    if (displaySet instanceof ImageSet) {
+    if (displaySet instanceof ImageSet || displaySet.sopClassModule) {
       this._displaySets.push(displaySet);
       return true;
     }
@@ -659,3 +661,24 @@ function _sortBySeriesNumber(a, b) {
 
   return seriesNumberAIsGreaterOrUndefined ? 1 : -1;
 }
+
+/**
+ * Move Segmentation modality files to the end of the list of
+ * display sets. This is a workaround to prevent issues when
+ * the referenced dataset's metadata is not yet available.
+ *
+ * It will be removed once proper SEG ingestion is added.
+ *
+ * @param {*} a - DisplaySet
+ * @param {*} b - DisplaySet
+ */
+function _sortSegToEndOfList(a, b) {
+  const displaySetAIsSeg = a.modality === 'SEG';
+  const displaySetBIsSeg = b.modality === 'SEG';
+
+  if (displaySetAIsSeg && displaySetBIsSeg) {
+    return 0;
+  }
+
+  return displaySetAIsSeg ? 1 : -1;
+}

platform/core/src/studies/retrieveStudyMetadata.js

@@ -1,6 +1,6 @@
 import RetrieveMetadata from './services/wado/retrieveMetadata.js';
 
-const module = 'RetrieveStudyMetadata';
+const moduleName = 'RetrieveStudyMetadata';
 // Cache for promises. Prevents unnecessary subsequent calls to the server
 const StudyMetaDataPromises = new Map();
 
@@ -17,11 +17,11 @@ export function retrieveStudyMetadata(server, studyInstanceUid) {
   // corresponding promise from the "StudyMetaDataPromises" map...
 
   if (!server) {
-    throw new Error(`${module}: Required 'server' parameter not provided.`);
+    throw new Error(`${moduleName}: Required 'server' parameter not provided.`);
   }
   if (!studyInstanceUid) {
     throw new Error(
-      `${module}: Required 'studyInstanceUid' parameter not provided.`
+      `${moduleName}: Required 'studyInstanceUid' parameter not provided.`
     );
   }
 

platform/core/src/studies/services/wado/retrieveMetadata.js

@@ -133,7 +133,8 @@ function getSourceImageInstanceUid(instance) {
   if (
     SourceImageSequence &&
     SourceImageSequence.Value &&
-    SourceImageSequence.Value.length
+    SourceImageSequence.Value.length &&
+    SourceImageSequence.Value[0]['00081155'].Value
   ) {
     return SourceImageSequence.Value[0]['00081155'].Value[0];
   }
@@ -293,7 +294,6 @@ async function resultDataToStudyMetadata(server, studyInstanceUid, resultData) {
   // TODO: Pass a reference ID to the server instead of including the URLs here
   const studyData = {
     seriesList: [],
-    studyInstanceUid,
     wadoUriRoot: server.wadoUriRoot,
     wadoRoot: server.wadoRoot,
     qidoRoot: server.qidoRoot,
@@ -402,6 +402,7 @@ async function resultDataToStudyMetadata(server, studyInstanceUid, resultData) {
         baseWadoRsUri: baseWadoRsUri,
         wadouri: WADOProxy.convertURL(wadouri, server),
         wadorsuri: WADOProxy.convertURL(wadorsuri, server),
+        wadoRoot: server.wadoRoot,
         imageRendering: server.imageRendering,
         thumbnailRendering: server.thumbnailRendering,
       };

platform/core/src/utils/addServer.test.js

@@ -11,9 +11,6 @@ describe('addServers', () => {
         qidoSupportsIncludeField: true,
         imageRendering: 'wadors',
         thumbnailRendering: 'wadors',
-        requestOptions: {
-          requestFromBrowser: true,
-        },
       },
     ],
     oidc: [
@@ -52,7 +49,6 @@ describe('addServers', () => {
         name: 'DCM4CHEE',
         qidoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',
         qidoSupportsIncludeField: true,
-        requestOptions: { requestFromBrowser: true },
         thumbnailRendering: 'wadors',
         type: 'dicomWeb',
         wadoRoot: 'https://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs',

platform/core/src/utils/dicomLoaderService.js

@@ -0,0 +1,199 @@
+import cornerstone from 'cornerstone-core';
+import cornerstoneWADOImageLoader from 'cornerstone-wado-image-loader';
+import { api } from 'dicomweb-client';
+import DICOMWeb from '../DICOMWeb';
+
+const getImageId = imageObj => {
+  if (!imageObj) {
+    return;
+  }
+
+  return typeof imageObj.getImageId === 'function'
+    ? imageObj.getImageId()
+    : imageObj.url;
+};
+
+const findImageIdOnStudies = (studies, displaySetInstanceUid) => {
+  const study = studies.find(study => {
+    const displaySet = study.displaySets.some(
+      displaySet => displaySet.displaySetInstanceUid === displaySetInstanceUid
+    );
+    return displaySet;
+  });
+  const { seriesList = [] } = study;
+  const { instances = [] } = seriesList[0] || {};
+  const instance = instances[0];
+
+  return getImageId(instance);
+};
+
+const someInvalidStrings = strings => {
+  const stringsArray = Array.isArray(strings) ? strings : [strings];
+  const emptyString = string => !string;
+  let invalid = stringsArray.some(emptyString);
+  return invalid;
+};
+
+const getImageInstance = dataset => {
+  return dataset && dataset.images && dataset.images[0];
+};
+
+const getImageInstanceId = imageInstance => {
+  return getImageId(imageInstance);
+};
+
+const fetchIt = (url, headers = DICOMWeb.getAuthorizationHeader()) => {
+  return fetch(url, headers).then(response => response.arrayBuffer());
+};
+
+const cornerstoneRetriever = imageId => {
+  return cornerstone.loadAndCacheImage(imageId).then(image => {
+    return image && image.data && image.data.byteArray.buffer;
+  });
+};
+
+const wadorsRetriever = (
+  url,
+  studyInstanceUID,
+  seriesInstanceUID,
+  sopInstanceUID,
+  headers = DICOMWeb.getAuthorizationHeader()
+) => {
+  const config = {
+    url,
+    headers,
+  };
+  const dicomWeb = new api.DICOMwebClient(config);
+
+  return dicomWeb.retrieveInstance({
+    studyInstanceUID,
+    seriesInstanceUID,
+    sopInstanceUID,
+  });
+};
+
+const getImageLoaderType = imageId => {
+  const loaderRegExp = /^\w+\:/;
+  const loaderType = loaderRegExp.exec(imageId);
+
+  return (
+    (loaderRegExp.lastIndex === 0 &&
+      loaderType &&
+      loaderType[0] &&
+      loaderType[0].replace(':', '')) ||
+    ''
+  );
+};
+
+const DicomLoaderService = new (class {
+  getLocalData(dataset, studies) {
+    if (dataset && dataset.localFile) {
+      // Use referenced imageInstance
+      const imageInstance = getImageInstance(dataset);
+      let imageId = getImageInstanceId(imageInstance);
+
+      // or Try to get it from studies
+      if (someInvalidStrings(imageId)) {
+        imageId = findImageIdOnStudies(studies, dataset.displaySetInstanceUid);
+      }
+
+      if (!someInvalidStrings(imageId)) {
+        return cornerstoneWADOImageLoader.wadouri.loadFileRequest(imageId);
+      }
+    }
+  }
+
+  getDataByImageType(dataset) {
+    const imageInstance = getImageInstance(dataset);
+
+    if (imageInstance) {
+      const imageId = getImageInstanceId(imageInstance);
+      let getDicomDataMethod = fetchIt;
+      const loaderType = getImageLoaderType(imageId);
+
+      switch (loaderType) {
+        case 'dicomfile':
+          getDicomDataMethod = cornerstoneRetriever.bind(this, imageId);
+          break;
+        case 'wadors':
+          const url = imageInstance.getData().wadoRoot;
+          const studyInstanceUID = imageInstance.getStudyInstanceUID();
+          const seriesInstanceUID = imageInstance.getSeriesInstanceUID();
+          const sopInstanceUID = imageInstance.getSOPInstanceUID();
+          const invalidParams = someInvalidStrings([
+            url,
+            studyInstanceUID,
+            seriesInstanceUID,
+            sopInstanceUID,
+          ]);
+          if (invalidParams) {
+            return;
+          }
+
+          getDicomDataMethod = wadorsRetriever.bind(
+            this,
+            url,
+            studyInstanceUID,
+            seriesInstanceUID,
+            sopInstanceUID
+          );
+          break;
+        case 'wadouri':
+          // Strip out the image loader specifier
+          imageId = imageId.substring(imageId.indexOf(':') + 1);
+
+          if (someInvalidStrings(imageId)) {
+            return;
+          }
+          getDicomDataMethod = fetchIt.bind(this, imageId);
+          break;
+      }
+
+      return getDicomDataMethod();
+    }
+  }
+
+  getDataByDatasetType(dataset) {
+    const {
+      studyInstanceUid,
+      seriesInstanceUid,
+      sopInstanceUid,
+      authorizationHeaders,
+      wadoRoot,
+      wadoUri,
+    } = dataset;
+    // Retrieve wadors or just try to fetch wadouri
+    if (!someInvalidStrings(wadoRoot)) {
+      return wadorsRetriever(
+        wadoRoot,
+        studyInstanceUid,
+        seriesInstanceUid,
+        sopInstanceUid,
+        authorizationHeaders
+      );
+    } else if (!someInvalidStrings(wadoUri)) {
+      return fetchIt(wadoUri, { headers: authorizationHeaders });
+    }
+  }
+
+  *getLoaderIterator(dataset, studies) {
+    yield this.getLocalData(dataset, studies);
+    yield this.getDataByImageType(dataset);
+    yield this.getDataByDatasetType(dataset);
+  }
+
+  findDicomDataPromise(dataset, studies) {
+    const loaderIterator = this.getLoaderIterator(dataset, studies);
+    // it returns first valid retriever method.
+    for (const loader of loaderIterator) {
+      if (loader) {
+        return loader;
+      }
+    }
+
+    // in case of no valid loader
+    throw new Error('Invalid dicom data loader');
+  }
+})();
+
+export default DicomLoaderService;

platform/core/src/utils/getWADORSImageId.js

@@ -5,11 +5,16 @@ function getWADORSImageUrl(instance, frame) {
     return;
   }
 
-  // We need to sum 1 because WADO-RS frame number is 1-based
-  frame = frame ? parseInt(frame) + 1 : 1;
+  // Use null to obtain an imageId which represents the instance
+  if (frame === null) {
+    wadorsuri = wadorsuri.replace(/frames\/(\d+)/, '');
+  } else {
+    // We need to sum 1 because WADO-RS frame number is 1-based
+    frame = frame ? parseInt(frame) + 1 : 1;
 
-  // Replaces /frame/1 by /frame/{frame}
-  wadorsuri = wadorsuri.replace(/frames\/(\d+)/, `frames/${frame}`);
+    // Replaces /frame/1 by /frame/{frame}
+    wadorsuri = wadorsuri.replace(/frames\/(\d+)/, `frames/${frame}`);
+  }
 
   return wadorsuri;
 }

platform/core/src/utils/index.js

@@ -8,6 +8,7 @@ import sortBy from './sortBy.js';
 import studyMetadataManager from './studyMetadataManager';
 import updateMetaDataManager from './updateMetaDataManager.js';
 import writeScript from './writeScript.js';
+import DicomLoaderService from './dicomLoaderService.js';
 
 const utils = {
   guid,
@@ -21,6 +22,7 @@ const utils = {
   // Updates WADO-RS metaDataManager
   updateMetaDataManager,
   DICOMTagDescriptions,
+  DicomLoaderService,
 };
 
 export {
@@ -35,6 +37,7 @@ export {
   // Updates WADO-RS metaDataManager
   updateMetaDataManager,
   DICOMTagDescriptions,
+  DicomLoaderService,
 };
 
 export default utils;

platform/core/src/utils/index.test.js

@@ -14,6 +14,7 @@ describe('Top level exports', () => {
       // Updates WADO-RS metaDataManager
       'updateMetaDataManager',
       'DICOMTagDescriptions',
+      'DicomLoaderService',
     ].sort();
 
     const exports = Object.keys(utils.default).sort();

platform/i18n/CHANGELOG.md

@@ -3,6 +3,22 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.50.3...@ohif/i18n@0.50.4) (2019-09-10)
+
+**Note:** Version bump only for package @ohif/i18n
+
+
+
+
+
+## [0.50.3](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.50.2...@ohif/i18n@0.50.3) (2019-09-04)
+
+**Note:** Version bump only for package @ohif/i18n
+
+
+
+
+
 ## [0.50.2](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.50.1...@ohif/i18n@0.50.2) (2019-09-04)
 
 

platform/i18n/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/i18n",
-  "version": "0.50.2",
+  "version": "0.50.4",
   "description": "Internationalization library for The OHIF Viewer",
   "author": "OHIF",
   "license": "MIT",
@@ -20,9 +20,9 @@
     "access": "public"
   },
   "scripts": {
-    "dev": "webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
+    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
     "dev:i18n": "yarn run dev",
-    "build": "webpack --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
     "build:package": "yarn run build",
     "prepublishOnly": "yarn run build",
     "pullTranslations": "./pullTranslations.sh",
@@ -32,8 +32,8 @@
   "peerDependencies": {
     "i18next": "^17.0.3",
     "i18next-browser-languagedetector": "^3.0.1",
-    "react": "^16.0.0",
-    "react-dom": "^16.0.0",
+    "react": "^16.8.6",
+    "react-dom": "^16.8.6",
     "react-i18next": "^10.11.0"
   },
   "dependencies": {

platform/ui/CHANGELOG.md

@@ -3,6 +3,77 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+# [0.52.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.51.3...@ohif/ui@0.52.0) (2019-10-01)
+
+
+### Features
+
+* 🎸 MPR UI improvements. Added MinIP, AvgIP, slab thickness slider and mode toggle ([#947](https://github.com/OHIF/Viewers/issues/947)) ([c79c0c3](https://github.com/OHIF/Viewers/commit/c79c0c3))
+
+
+
+
+
+## [0.51.3](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.51.2...@ohif/ui@0.51.3) (2019-10-01)
+
+
+### Bug Fixes
+
+* Address issues with touch devices and drag/drop causing crashes ([#982](https://github.com/OHIF/Viewers/issues/982)) ([cf40a83](https://github.com/OHIF/Viewers/commit/cf40a83))
+
+
+
+
+
+## [0.51.2](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.51.1...@ohif/ui@0.51.2) (2019-09-26)
+
+
+### Bug Fixes
+
+* 🐛 Set series into active viewport by clicking on thumbnail ([#945](https://github.com/OHIF/Viewers/issues/945)) ([5551f81](https://github.com/OHIF/Viewers/commit/5551f81)), closes [#895](https://github.com/OHIF/Viewers/issues/895) [#895](https://github.com/OHIF/Viewers/issues/895)
+
+
+
+
+
+## [0.51.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.51.0...@ohif/ui@0.51.1) (2019-09-19)
+
+
+### Bug Fixes
+
+* Use HTML5Backend for drag-drop if the device does not support touch ([#927](https://github.com/OHIF/Viewers/issues/927)) ([6fdac4d](https://github.com/OHIF/Viewers/commit/6fdac4d))
+
+
+
+
+
+# [0.51.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.50.4...@ohif/ui@0.51.0) (2019-09-12)
+
+
+### Features
+
+* **EraserTool:** add eraserTool to @ohif/extension-cornerstone ([#912](https://github.com/OHIF/Viewers/issues/912)) ([698d274](https://github.com/OHIF/Viewers/commit/698d274))
+
+
+
+
+
+## [0.50.4](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.50.3...@ohif/ui@0.50.4) (2019-09-06)
+
+**Note:** Version bump only for package @ohif/ui
+
+
+
+
+
+## [0.50.3](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.50.2...@ohif/ui@0.50.3) (2019-09-04)
+
+**Note:** Version bump only for package @ohif/ui
+
+
+
+
+
 ## [0.50.2](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.50.1...@ohif/ui@0.50.2) (2019-09-04)
 
 

platform/ui/README.md

@@ -49,8 +49,8 @@ yarn add @ohif/ui --exact
 ## Usage
 
 ```jsx
-import React, { Component } from "react";
-import { LayoutButton } from "@ohif/ui";
+import React, { Component } from 'react';
+import { LayoutButton } from '@ohif/ui';
 
 class Example extends Component {
   constructor(props) {
@@ -58,10 +58,10 @@ class Example extends Component {
 
     this.state = {
       selectedCell: {
-        className: "hover",
+        className: 'hover',
         col: 1,
-        row: 1
-      }
+        row: 1,
+      },
     };
   }
 
@@ -117,10 +117,9 @@ Links:
 
 <!-- prettier-ignore-start -->
 [all-contributors-image]: https://img.shields.io/badge/all_contributors-0-orange.svg?style=flat-square
-[contributing-url]: https://github.com/OHIF/react-viewerbase/blob/master/CONTRIBUTING.md
-[npm-url]: https://npmjs.org/package/react-viewerbase
-[npm-downloads-image]: https://img.shields.io/npm/dm/react-viewerbase.svg?style=flat-square
-[npm-version-image]: https://img.shields.io/npm/v/react-viewerbase.svg?style=flat-square
+[npm-url]: https://npmjs.org/package/@ohif/ui
+[npm-downloads-image]: https://img.shields.io/npm/dm/@ohif/ui.svg?style=flat-square
+[npm-version-image]: https://img.shields.io/npm/v/@ohif/ui.svg?style=flat-square
 [license-image]: https://img.shields.io/badge/license-MIT-blue.svg?style=flat-square
 [license-url]: LICENSE
 <!-- prettier-ignore-end -->

platform/ui/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/ui",
-  "version": "0.50.2",
+  "version": "0.52.0",
   "description": "A set of React components for Medical Imaging Viewers",
   "author": "OHIF Contributors",
   "license": "MIT",
@@ -23,7 +23,7 @@
     "dev": "docz dev",
     "dev:ui": "yarn run dev",
     "docs": "docz build",
-    "build": "webpack --config .webpack/webpack.prod.js",
+    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
     "build:package": "yarn run build",
     "prepublishOnly": "yarn run build",
     "test:unit": "jest --watchAll",
@@ -48,8 +48,9 @@
     "prop-types": "15.6.2",
     "react-bootstrap-modal": "4.2.0",
     "react-dates": "18.4.1",
-    "react-dnd": "8.0.3",
-    "react-dnd-touch-backend": "^0.8.3",
+    "react-dnd": "9.3.4",
+    "react-dnd-html5-backend": "^9.3.4",
+    "react-dnd-touch-backend": "^9.3.4",
     "react-i18next": "^10.11.0",
     "react-with-direction": "1.3.0"
   },

platform/ui/src/__docs__/compatibility.mdx

@@ -7,7 +7,7 @@ route: /compatibility
 
 ## Browser Support
 
-React Viewerbase relies on
+`@ohif/ui` relies on
 [browsers supported by Styled Components](https://www.styled-components.com/docs/faqs#which-browsers-are-supported)
 or browsers supported by emotion.
 

platform/ui/src/__docs__/getting-started.mdx

@@ -11,20 +11,20 @@ route: /getting-started
 > possibility of introducing breaking changes. Please depend on an "exact"
 > version in your projects to prevent issues caused by loose versioning.
 
-Install `react-viewerbase` from npm:
+Install `@ohif/ui` from npm:
 
 ```shell
 // with npm
-npm i react-viewerbase --save-exact
+npm i @ohif/ui --save-exact
 
 // with yarn
-yarn add react-viewerbase --exact
+yarn add @ohif/ui --exact
 ```
 
 ## Usage
 
-There is some setup required for `react-viewerbase`. We are working to eliminate
-these requirements with the goal of providing ready to use components.
+There is some setup required for `@ohif/ui`. We are working to eliminate these
+requirements with the goal of providing ready to use components.
 
 ### External Dependencies
 
@@ -37,8 +37,8 @@ or the font you set for your theme:
 'https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700|Sanchez&display=swap';
 ```
 
-React Viewerbase also looks for theme CSS variabled defined on `:root`. You can
-find a list of variables [on the theming page](/styling-and-theming)
+`@ohif/ui` also looks for theme CSS variabled defined on `:root`. You can find a
+list of variables [on the theming page](/styling-and-theming)
 
 ### Import & Use
 
@@ -46,7 +46,7 @@ You can use components in your React app:
 
 ```js
 import React, { Component } from 'react';
-import { LayoutButton } from 'react-viewerbase';
+import { LayoutButton } from '@ohif/ui';
 
 class Example extends Component {
   constructor(props) {

platform/ui/src/__docs__/introduction.mdx

@@ -3,14 +3,14 @@ name: Introduction
 route: /
 ---
 
-import { Playground, Props } from 'docz'
-import { State } from 'react-powerplug'
-import { TableList, TableListItem } from './../index.js'
+import { Playground, Props } from 'docz';
+import { State } from 'react-powerplug';
+import { TableList, TableListItem } from './../index.js';
 
 # Introduction
 
-**React Viewerbase is a collection of components and utilities** that power
-OHIF's [zero-footprint DICOM viewer](https://github.com/OHIF/Viewers)
+**@ohif/ui is a collection of components and utilities** that power OHIF's
+[zero-footprint DICOM viewer](https://github.com/OHIF/Viewers)
 ([demo][demo-url]). We maintain them as a separate component library to:
 
 - Decouple presentation from business logic
@@ -25,11 +25,11 @@ OHIF's [zero-footprint DICOM viewer](https://github.com/OHIF/Viewers)
 > version in your projects to prevent issues caused by loose versioning.
 
 ```js
-// Add 'react-viewerbase' as a dependency
-yarn add react-viewerbase
+// Add '@ohif/ui' as a dependency
+yarn add @ohif/ui
 
 // Import and use components
-import { TableList } from 'react-viewerbase'
+import { TableList } from '@ohif/ui'
 ```
 
 <Playground>
@@ -56,7 +56,7 @@ import { TableList } from 'react-viewerbase'
             >
               <label>{item.label}</label>
             </TableListItem>
-          )
+          );
         })}
       </TableList>
     )}

platform/ui/src/__docs__/translating.mdx

@@ -36,9 +36,9 @@ export default withTranslation('MyNameSpace')(MyComponent);
 For further information about namespaces and how they work, please visit
 [OHIF Namespaces docs](https://docs.ohif.org/essentials/translating.html#namespaces).
 
-### How to get right the Name Space of a react-viewerbase component?
+### How to get right the Namespace of a `@ohif/ui` component?
 
-Check the component's page in this site, the NameSpace information should be on
+Check the component's page in this site, the Namespace information should be on
 the bottom line.
 
 Also, a nameSpace is defined when exporting a component, this information can be
@@ -50,10 +50,10 @@ E.g.
 export default withTranslation('TheNamespaceYouAreLookingFor')(TheComponentYouWantToUse);
 ```
 
-### How to use another NameSpace inside the current NameSpace?
+### How to use another Namespace inside the current Namespace?
 
 i18next provides a parsing feature able to get translations strings from any
-NameSpace, like this following example getting data from `InnerSpace` NameSpace:
+Namespace, like this following example getting data from `InnerSpace` Namespace:
 
 ```
 $t(InnerSpace:Reset)
@@ -64,8 +64,8 @@ export default withTranslation('OuterSpace')(TheComponent);
 
 ## I18next Provider
 
-**React Viewerbase** pass down the `t` function trough the custom
-[withTranslation HOC](https://github.com/OHIF/react-viewerbase/blob/master/src/utils/LanguageProvider.js).
+**@ohif/ui** pass down the `t` function trough the custom
+[withTranslation HOC](https://github.com/OHIF/Viewers/blob/master/platform/ui/src/utils/LanguageProvider.js).
 
 ---
 

platform/ui/src/components/checkbox/checkbox.js

@@ -6,15 +6,29 @@ export class Checkbox extends Component {
   static propTypes = {
     label: PropTypes.string.isRequired,
     checked: PropTypes.bool,
+    onChange: PropTypes.func,
   };
 
   constructor(props) {
     super(props);
-    this.state = { checked: props.checked, label: props.label };
+    this.state = { checked: !!props.checked, label: props.label };
   }
 
   handleChange(e) {
-    this.setState({ checked: e.target.checked });
+    const checked = e.target.checked;
+    this.setState({ checked });
+    if (this.props.onChange) this.props.onChange(checked);
+  }
+
+  componentDidUpdate(props) {
+    const { checked = false, label } = props;
+
+    if (this.state.checked !== checked || this.state.label !== label) {
+      this.setState({
+        checked,
+        label,
+      });
+    }
   }
 
   render() {
@@ -32,9 +46,7 @@ export class Checkbox extends Component {
             <input
               type="checkbox"
               checked={this.state.checked}
-              onChange={e => {
-                this.handleChange(e);
-              }}
+              onChange={this.handleChange.bind(this)}
             />
             {checkbox}
             {this.state.label}

platform/ui/src/components/cineDialog/CineDialog.js

@@ -121,11 +121,6 @@ class CineDialog extends PureComponent {
     }
   };
 
-  // TODO:
-  // - Add next / previous display set buttons which just call
-  // onClickNextDisplaySet and onClickPreviousDisplaySet which are passed in as props.
-  // See https://github.com/OHIF/Viewers/blob/master/Packages/ohif-viewerbase/client/components/viewer/cineDialog/cineDialog.html#L38
-  // - Add 'isEnabled' prop: https://github.com/OHIF/Viewers/blob/master/Packages/ohif-viewerbase/client/components/viewer/cineDialog/cineDialog.js#L301
   render() {
     const { t } = this.props;
     return (

platform/ui/src/components/index.js

@@ -13,6 +13,7 @@ import {
   UserPreferencesModal,
 } from './userPreferencesModal';
 
+import { Checkbox } from './checkbox';
 import { CineDialog } from './cineDialog';
 import { QuickSwitch } from './quickSwitch';
 import { RoundedButtonGroup } from './roundedButtonGroup';
@@ -23,6 +24,7 @@ import { ToolbarSection } from './toolbarSection';
 import { Tooltip } from './tooltip';
 
 export {
+  Checkbox,
   CineDialog,
   ExampleDropTarget,
   LayoutButton,

platform/ui/src/components/studyBrowser/ThumbnailEntry.js

@@ -99,13 +99,13 @@ class ThumbnailEntry extends Component {
 
   onClick = () => {
     if (this.props.onClick) {
-      this.props.onClick();
+      this.props.onClick(this.props.displaySetInstanceUid);
     }
   };
 
   onDoubleClick = () => {
     if (this.props.onDoubleClick) {
-      this.props.onDoubleClick();
+      this.props.onDoubleClick(this.props.displaySetInstanceUid);
     }
   };
 }

platform/ui/src/elements/Icon/getIcon.js

@@ -30,6 +30,7 @@ import edit from './icons/edit.svg';
 import ellipseCircle from './icons/ellipse-circle.svg';
 import ellipseH from './icons/ellipse-h.svg';
 import ellipseV from './icons/ellipse-v.svg';
+import eraser from './icons/eraser.svg';
 import exclamationCircle from './icons/exclamation-circle.svg';
 import exclamationTriangle from './icons/exclamation-triangle.svg';
 import fastBackward from './icons/fast-backward.svg';
@@ -110,6 +111,7 @@ const ICONS = {
   'create-comment': createComment,
   'create-screen-capture': createScreenCapture,
   edit,
+  eraser,
   'fast-backward': fastBackward,
   'fast-forward': fastForward,
   'object-group': objectGroup,

platform/ui/src/elements/Icon/icons/eraser.svg

@@ -0,0 +1,15 @@
+<svg
+  xmlns="http://www.w3.org/2000/svg"
+  viewBox="0 0 2048 1792"
+  aria-labelledby="eraser"
+  width="1em"
+  height="1em"
+  fill="currentColor"
+>
+  <title id="title">Eraser</title>
+  <path transform="translate(0,1792) scale(1,-1)" fill="ACTIVE_COLOR" d="M960 1408l336-384h-768l-336 384h768zm1013-1077q15
+      34 9.5 71.5t-30.5 65.5l-896 1024q-38 44-96 44h-768q-38
+      0-69.5-20.5t-47.5-54.5q-15-34-9.5-71.5t30.5-65.5l896-1024q38-44 96-44h768q38
+      0 69.5 20.5t47.5 54.5z"
+  />
+</svg>

platform/ui/src/elements/form/Range.css

@@ -2,6 +2,7 @@
   margin: 0;
   width: 100%;
   -webkit-appearance: none;
+  background-color: transparent;
 }
 
 .range:focus {