chore(release): publish [skip ci]

- @ohif/extension-vtk@1.12.23
 - @ohif/core@2.16.18
 - @ohif/viewer@4.12.26

extensions/cornerstone/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [2.12.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.9...@ohif/extension-cornerstone@2.12.10) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
 ## [2.12.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.8...@ohif/extension-cornerstone@2.12.9) (2022-03-25)
 
 **Note:** Version bump only for package @ohif/extension-cornerstone

extensions/cornerstone/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-cornerstone",
-  "version": "2.12.9",
+  "version": "2.12.10",
   "description": "OHIF extension for Cornerstone",
   "author": "OHIF",
   "license": "MIT",
@@ -36,7 +36,7 @@
     "cornerstone-math": "^0.1.9",
     "cornerstone-tools": "^6.0.6",
     "cornerstone-wado-image-loader": "^4.1.0",
-    "dcmjs": "0.19.8",
+    "dcmjs": "0.19.9",
     "dicom-parser": "^1.8.11",
     "hammerjs": "^2.0.8",
     "prop-types": "^15.6.2",

extensions/dicom-html/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.3.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.20...@ohif/extension-dicom-html@1.3.21) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/extension-dicom-html
+
+
+
+
+
 ## [1.3.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.19...@ohif/extension-dicom-html@1.3.20) (2022-03-25)
 
 **Note:** Version bump only for package @ohif/extension-dicom-html

extensions/dicom-html/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-html",
-  "version": "1.3.20",
+  "version": "1.3.21",
   "description": "OHIF extension for rendering structured reports to HTML",
   "author": "OHIF",
   "license": "MIT",
@@ -29,7 +29,7 @@
   },
   "peerDependencies": {
     "@ohif/core": "^0.50.0",
-    "dcmjs": "0.19.8",
+    "dcmjs": "0.19.9",
     "prop-types": "^15.6.2",
     "react": "^16.8.6",
     "react-dom": "^16.8.6"

extensions/dicom-rt/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.7.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.10...@ohif/extension-dicom-rt@0.7.11) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/extension-dicom-rt
+
+
+
+
+
 ## [0.7.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.9...@ohif/extension-dicom-rt@0.7.10) (2022-03-25)
 
 **Note:** Version bump only for package @ohif/extension-dicom-rt

extensions/dicom-rt/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-rt",
-  "version": "0.7.10",
+  "version": "0.7.11",
   "description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
   "author": "OHIF",
   "license": "MIT",
@@ -31,7 +31,7 @@
     "@ohif/core": "^0.50.0",
     "cornerstone-core": "^2.6.1",
     "cornerstone-tools": "^6.0.6",
-    "dcmjs": "0.19.8",
+    "dcmjs": "0.19.9",
     "gl-matrix": "^3.3.0",
     "prop-types": "^15.6.2",
     "react": "^16.8.6",

extensions/dicom-segmentation/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.7.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.10...@ohif/extension-dicom-segmentation@0.7.11) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
 ## [0.7.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.9...@ohif/extension-dicom-segmentation@0.7.10) (2022-03-25)
 
 **Note:** Version bump only for package @ohif/extension-dicom-segmentation

extensions/dicom-segmentation/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-segmentation",
-  "version": "0.7.10",
+  "version": "0.7.11",
   "description": "OHIF extension for viewing segmentations in the 2D MPR view",
   "author": "OHIF",
   "license": "MIT",
@@ -31,7 +31,7 @@
     "@ohif/core": "^0.50.0",
     "cornerstone-core": "^2.6.1",
     "cornerstone-tools": "^6.0.6",
-    "dcmjs": "0.19.8",
+    "dcmjs": "0.19.9",
     "prop-types": "^15.6.2",
     "react": "^16.8.6",
     "react-dom": "^16.8.6"

extensions/dicom-segmentation/src/components/SegmentationPanel/SegmentationPanel.js

@@ -226,7 +226,6 @@ const SegmentationPanel = ({
     };
   }, [
     activeIndex,
-    updateSegmentationComboBox,
     viewports,
   ]);
 
@@ -234,23 +233,9 @@ const SegmentationPanel = ({
     const index = e.detail.activatedLabelmapIndex;
     if (index !== -1) {
       setState(state => ({ ...state, selectedSegmentation: index }));
-    } else {
-      cleanSegmentationComboBox();
     }
   };
 
-  const cleanSegmentationComboBox = () => {
-    setState(state => ({
-      ...state,
-      segmentsHidden: [],
-      segmentNumbers: [],
-      labelMapList: [],
-      segmentList: [],
-      isDisabled: true,
-      selectedSegmentation: -1,
-    }));
-  };
-
   const refreshSegmentations = () => {
     const activeViewport = getActiveViewport();
     const isDisabled = !activeViewport || !activeViewport.StudyInstanceUID;
@@ -709,7 +694,7 @@ const SegmentationPanel = ({
           count={state.segmentList.length}
           isVisible={
             state.segmentsHidden.filter(isHidden => isHidden === true).length <
-            state.segmentNumbers.length
+            state.segmentNumbers.length && state.segmentNumbers.length > 0
           }
           onVisibilityChange={onVisibilityChangeHandler}
         >

extensions/dicom-segmentation/src/utils/setActiveLabelMap.js

@@ -47,14 +47,23 @@ export default async function setActiveLabelmap(
     return labelmapIndex;
   }
 
-  if (!displaySet.isLoaded) {
+  if (!displaySet.isLoaded && !displaySet.loadError) {
     try {
       await displaySet.load(referencedDisplaySet, studies);
     } catch (error) {
       displaySet.isLoaded = false;
       displaySet.loadError = true;
+      displaySet.segLoadErrorMessagge = error.message;
       onDisplaySetLoadFailure(error);
 
+      /*
+       * TODO: Improve the way we notify parts of the app
+       * that depends on derived display sets to be loaded.
+       * (Implement pubsub for better tracking of derived display sets)
+       */
+      const event = new CustomEvent('segmentationLoadingError');
+      document.dispatchEvent(event);
+
       return -1;
     }
   }

extensions/dicom-tag-browser/CHANGELOG.md

@@ -3,6 +3,22 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.2.23](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.22...@ohif/extension-dicom-tag-browser@0.2.23) (2022-04-06)
+
+**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
+
+
+
+
+
+## [0.2.22](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.21...@ohif/extension-dicom-tag-browser@0.2.22) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
+
+
+
+
+
 ## [0.2.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.20...@ohif/extension-dicom-tag-browser@0.2.21) (2022-03-25)
 
 **Note:** Version bump only for package @ohif/extension-dicom-tag-browser

extensions/dicom-tag-browser/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-tag-browser",
-  "version": "0.2.21",
+  "version": "0.2.23",
   "description": "OHIF extension for checking DICOM headers.",
   "author": "OHIF",
   "license": "MIT",
@@ -28,7 +28,7 @@
   },
   "peerDependencies": {
     "@ohif/core": "^2.6.0",
-    "dcmjs": "0.19.8",
+    "dcmjs": "0.19.9",
     "react": "^16.8.6"
   },
   "dependencies": {

extensions/dicom-tag-browser/src/components/DicomTagBrowser.js

@@ -59,7 +59,7 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
     let metadata;
     const isImageStack =
       activeDisplaySet instanceof ImageSet &&
-      activeDisplaySet.isModalitySupported === true;
+      activeDisplaySet.isSOPClassUIDSupported === true;
 
     let instanceList;
 

extensions/vtk/CHANGELOG.md

@@ -3,6 +3,30 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.12.23](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.22...@ohif/extension-vtk@1.12.23) (2022-04-22)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.22](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.21...@ohif/extension-vtk@1.12.22) (2022-04-06)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.20...@ohif/extension-vtk@1.12.21) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
 ## [1.12.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.19...@ohif/extension-vtk@1.12.20) (2022-03-25)
 
 **Note:** Version bump only for package @ohif/extension-vtk

extensions/vtk/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-vtk",
-  "version": "1.12.20",
+  "version": "1.12.23",
   "description": "OHIF extension for VTK.js",
   "author": "OHIF",
   "license": "MIT",
@@ -35,7 +35,7 @@
     "cornerstone-core": "^2.6.1",
     "cornerstone-tools": "^6.0.6",
     "cornerstone-wado-image-loader": "^4.1.0",
-    "dcmjs": "0.19.8",
+    "dcmjs": "0.19.9",
     "dicom-parser": "^1.8.11",
     "i18next": "^17.0.3",
     "i18next-browser-languagedetector": "^3.0.1",
@@ -53,8 +53,8 @@
     "react-vtkjs-viewport": "^0.14.4"
   },
   "devDependencies": {
-    "@ohif/core": "^2.16.15",
+    "@ohif/core": "^2.16.18",
-    "@ohif/ui": "^1.10.7",
+    "@ohif/ui": "^1.10.8",
     "cornerstone-tools": "^6.0.6",
     "cornerstone-wado-image-loader": "^4.1.0",
     "dicom-parser": "^1.8.11",

platform/core/CHANGELOG.md

@@ -3,6 +3,30 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [2.16.18](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.17...@ohif/core@2.16.18) (2022-04-22)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.17](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.16...@ohif/core@2.16.17) (2022-04-06)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.16](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.15...@ohif/core@2.16.16) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
 ## [2.16.15](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.14...@ohif/core@2.16.15) (2022-03-25)
 
 **Note:** Version bump only for package @ohif/core

platform/core/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/core",
-  "version": "2.16.15",
+  "version": "2.16.18",
   "description": "Generic business logic for web-based medical imaging applications",
   "author": "OHIF Core Team",
   "license": "MIT",
@@ -39,7 +39,7 @@
   "dependencies": {
     "@babel/runtime": "^7.5.5",
     "ajv": "^6.10.0",
-    "dcmjs": "0.19.8",
+    "dcmjs": "0.19.9",
     "dicomweb-client": "^0.8.3",
     "immer": "9.0.12",
     "isomorphic-base64": "^1.0.2",

platform/core/src/classes/StudyLoadingListener.js

@@ -401,7 +401,7 @@ class StackLoadingListener extends BaseLoadingListener {
     const totalFramesCount = this.stack.imageIds.length;
     const loadedFramesCount = this.loadedCount;
     const loadingFramesCount = totalFramesCount - loadedFramesCount;
-    const percentComplete = Math.round(
+    const percentComplete = Math.ceil(
       (loadedFramesCount / totalFramesCount) * 100
     );
     const progressId = this._getProgressId();

platform/core/src/classes/metadata/StudyMetadata.js

@@ -3,12 +3,12 @@ import DICOMWeb from './../../DICOMWeb';
 import ImageSet from './../ImageSet';
 import { InstanceMetadata } from './InstanceMetadata';
 import { Metadata } from './Metadata';
-import OHIFError from '../OHIFError';
 import { SeriesMetadata } from './SeriesMetadata';
 // - createStacks
 import { api } from 'dicomweb-client';
 // - createStacks
 import { isImage } from '../../utils/isImage';
+import { naturalizeSOPClassUID } from '../../utils/naturalizeSOPClassUID';
 import {
   isDisplaySetReconstructable,
   isSpacingUniform,
@@ -169,8 +169,12 @@ class StudyMetadata extends Metadata {
         !isImage(instance.getTagValue('SOPClassUID')) &&
         !instance.getTagValue('Rows')
       ) {
-        // we set an empty display and we add a isModalitySupported variable to
+        // we set an empty display and we add a isSOPClassUIDSupported variable to
-        // print a warning that the modality is not supported in the thumbnail.
+        // print a warning that the series is not supported in the thumbnail.
+        // SOPClassUIDNaturalized is human readable name, since for non image series,
+        // we could have a mismatch between the SOPClassUID and the Modality.
+        // For example, in the Parametric map IOD Modality is expected to match
+        // the value for the series used to generate Parametric map, and there is no "PM" modality.
         const displaySet = new ImageSet([]);
         const seriesData = series.getData();
         displaySet.setAttributes({
@@ -188,7 +192,10 @@ class StudyMetadata extends Metadata {
           InstanceNumber: instance.getTagValue('InstanceNumber'), // Include the instance number
           AcquisitionDatetime: instance.getTagValue('AcquisitionDateTime'), // Include the acquisition datetime
           isReconstructable: false,
-          isModalitySupported: false,
+          isSOPClassUIDSupported: false,
+          SOPClassUIDNaturalized: naturalizeSOPClassUID(
+            instance.getTagValue('SOPClassUID')
+          ),
           metadata: instance.getData().metadata,
         });
 
@@ -333,10 +340,18 @@ class StudyMetadata extends Metadata {
     if (referencedSeriesInstanceUID) {
       filteredDerivedDisplaySets = filteredDerivedDisplaySets.filter(
         displaySet => {
-          return (
+          const referencedDisplaySet = StudyMetadata.getReferencedDisplaySet(
-            StudyMetadata.getReferencedDisplaySet(displaySet, [this])
+            displaySet,
-              .SeriesInstanceUID === referencedSeriesInstanceUID
+            [this]
           );
+          if (referencedDisplaySet) {
+            return (
+              referencedDisplaySet.SeriesInstanceUID ===
+              referencedSeriesInstanceUID
+            );
+          } else {
+            return false;
+          }
         }
       );
     }
@@ -923,7 +938,7 @@ const makeDisplaySet = (series, instances) => {
       : displayReconstructableInfo.reconstructionIssues;
   }
 
-  imageSet.isModalitySupported = true;
+  imageSet.isSOPClassUIDSupported = true;
 
   return imageSet;
 };

platform/core/src/utils/loadAndCacheDerivedDisplaySets.js

@@ -49,7 +49,12 @@ import studyMetadataManager from './studyMetadataManager';
  * @param {object} snackbar
  * @returns void
  */
-async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, logger, snackbar) {
+async function loadAndCacheDerivedDisplaySets(
+  referencedDisplaySet,
+  studies,
+  logger,
+  snackbar
+) {
   const { StudyInstanceUID, SeriesInstanceUID } = referencedDisplaySet;
   const promises = [];
   const studyMetadata = studyMetadataManager.get(StudyInstanceUID);
@@ -80,7 +85,8 @@ async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, log
   });
 
   // For each type, see if any are loaded, if not load the most recent.
-  await Promise.all(Object.keys(displaySetsPerModality).map(async (key) => {
+  await Promise.all(
+    Object.keys(displaySetsPerModality).map(async key => {
       const displaySets = displaySetsPerModality[key];
 
       const isLoaded = displaySets.some(displaySet => displaySet.isLoaded);
@@ -107,9 +113,58 @@ async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, log
       });
 
       try {
-      if (recentDisplaySet.hasOwnProperty('getSourceDisplaySet') &&
+        if (
-        typeof recentDisplaySet.getSourceDisplaySet === 'function') {
+          recentDisplaySet.hasOwnProperty('getSourceDisplaySet') &&
+          typeof recentDisplaySet.getSourceDisplaySet === 'function'
+        ) {
+          if (recentDisplaySet.Modality === 'SEG' && logger) {
+            const onDisplaySetLoadFailureHandler = error => {
+              logger.error({ error, message: error.message });
+              snackbar.show({
+                title: 'DICOM Segmentation Loader',
+                message: error.message,
+                type: 'error',
+                autoClose: true,
+              });
+            };
+
+            let activatedLabelmapIndex = -1;
+            while (activatedLabelmapIndex == -1) {
+              const {
+                referencedDisplaySet,
+                activatedLabelmapPromise,
+              } = await recentDisplaySet.getSourceDisplaySet(
+                studies,
+                true,
+                onDisplaySetLoadFailureHandler
+              );
+
+              activatedLabelmapIndex = await activatedLabelmapPromise;
+              const selectionFired = new CustomEvent(
+                'extensiondicomsegmentationsegselected',
+                {
+                  detail: { activatedLabelmapIndex: activatedLabelmapIndex },
+                }
+              );
+              document.dispatchEvent(selectionFired);
+
+              const lastDateTime = Number(
+                `${recentDisplaySet.SeriesDate}${recentDisplaySet.SeriesTime}`
+              );
+              recentDateTime = 0;
+              displaySets.forEach(displaySet => {
+                const dateTime = Number(
+                  `${displaySet.SeriesDate}${displaySet.SeriesTime}`
+                );
+                if (dateTime > recentDateTime && dateTime < lastDateTime) {
+                  recentDateTime = dateTime;
+                  recentDisplaySet = displaySet;
+                }
+              });
+            }
+          } else {
             await recentDisplaySet.getSourceDisplaySet(studies);
+          }
         } else {
           await recentDisplaySet.load(referencedDisplaySet, studies);
         }
@@ -125,7 +180,8 @@ async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, log
           autoClose: false,
         });
       }
-  }));
+    })
+  );
 
   /*
    * TODO: Improve the way we notify parts of the app
@@ -134,6 +190,6 @@ async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, log
    */
   const event = new CustomEvent('deriveddisplaysetsloadedandcached');
   document.dispatchEvent(event);
-};
+}
 
 export default loadAndCacheDerivedDisplaySets;

platform/core/src/utils/naturalizeSOPClassUID.js

@@ -0,0 +1,200 @@
+import { sopClassDictionary } from './sopClassDictionary';
+import { isImage } from './isImage';
+
+/**
+ * Naturalize SOP Class UID which do not have image data
+ * @param {string} SOPClassUID - SOP Class UID to be converted
+ * @returns {string} - human readable name
+ */
+export const naturalizeSOPClassUID = SOPClassUID => {
+  let naturalizedName = '';
+  if (!SOPClassUID) return naturalizedName;
+  if (!isImage) return naturalizedName;
+
+  if (sopClassDictionary.MRSpectroscopyStorage === SOPClassUID) {
+    naturalizedName = 'MRSpectroscopy';
+  } else if (sopClassDictionary.EnhancedUSVolumeStorage === SOPClassUID) {
+    naturalizedName = 'EnhancedUSVolume';
+  } else if (sopClassDictionary.Sop12LeadECGWaveformStorage === SOPClassUID) {
+    naturalizedName = 'Sop12LeadECGWaveform';
+  } else if (sopClassDictionary.GeneralECGWaveformStorage === SOPClassUID) {
+    naturalizedName = 'GeneralECGWaveform';
+  } else if (sopClassDictionary.AmbulatoryECGWaveformStorage === SOPClassUID) {
+    naturalizedName = 'AECAmbulatoryECGWaveformGW';
+  } else if (sopClassDictionary.HemodynamicWaveformStorage === SOPClassUID) {
+    naturalizedName = 'HemodynamicWaveform';
+  } else if (
+    sopClassDictionary.CardiacElectrophysiologyWaveformStorage === SOPClassUID
+  ) {
+    naturalizedName = 'CardiacElectrophysiologyWaveform';
+  } else if (
+    sopClassDictionary.BasicVoiceAudioWaveformStorage === SOPClassUID
+  ) {
+    naturalizedName = 'BasicVoiceAudioWaveform';
+  } else if (sopClassDictionary.GeneralAudioWaveformStorage === SOPClassUID) {
+    naturalizedName = 'GGeneralAudioWaveformAW';
+  } else if (sopClassDictionary.ArterialPulseWaveformStorage === SOPClassUID) {
+    naturalizedName = 'APArterialPulseWaveformW';
+  } else if (sopClassDictionary.RespiratoryWaveformStorage === SOPClassUID) {
+    naturalizedName = 'RespiratoryWaveform';
+  } else if (
+    sopClassDictionary.GrayscaleSoftcopyPresentationStateStorage === SOPClassUID
+  ) {
+    naturalizedName = 'GrayscaleSoftcopyPresentationState';
+  } else if (
+    sopClassDictionary.ColorSoftcopyPresentationStateStorage === SOPClassUID
+  ) {
+    naturalizedName = 'ColorSoftcopyPresentationState';
+  } else if (
+    sopClassDictionary.PseudoColorSoftcopyPresentationStateStorage ===
+    SOPClassUID
+  ) {
+    naturalizedName = 'PseudoColorSoftcopyPresentationState';
+  } else if (
+    sopClassDictionary.BlendingSoftcopyPresentationStateStorage === SOPClassUID
+  ) {
+    naturalizedName = 'BlendingSoftcopyPresentationState';
+  } else if (
+    sopClassDictionary.XAXRFGrayscaleSoftcopyPresentationStateStorage ===
+    SOPClassUID
+  ) {
+    naturalizedName = 'XAXRFGrayscaleSoftcopyPresentationState';
+  } else if (sopClassDictionary.RawDataStorage === SOPClassUID) {
+    naturalizedName = 'RawData';
+  } else if (sopClassDictionary.SpatialRegistrationStorage === SOPClassUID) {
+    naturalizedName = 'SpatialRegistration';
+  } else if (sopClassDictionary.SpatialFiducialsStorage === SOPClassUID) {
+    naturalizedName = 'SpatialFiducials';
+  } else if (
+    sopClassDictionary.DeformableSpatialRegistrationStorage === SOPClassUID
+  ) {
+    naturalizedName = 'DeformableSpatialRegistration';
+  } else if (sopClassDictionary.SegmentationStorage === SOPClassUID) {
+    naturalizedName = 'SEG';
+  } else if (sopClassDictionary.SurfaceSegmentationStorage === SOPClassUID) {
+    naturalizedName = 'SurfaceSEG';
+  } else if (sopClassDictionary.RealWorldValueMappingStorage === SOPClassUID) {
+    naturalizedName = 'RealWorldValueMapping';
+  } else if (sopClassDictionary.SurfaceScanMeshStorage === SOPClassUID) {
+    naturalizedName = 'SurfaceScanMesh';
+  } else if (sopClassDictionary.SurfaceScanPointCloudStorage === SOPClassUID) {
+    naturalizedName = 'SurfaceScanPointCloud';
+  } else if (
+    sopClassDictionary.StereometricRelationshipStorage === SOPClassUID
+  ) {
+    naturalizedName = 'StereometricRelationship';
+  } else if (sopClassDictionary.LensometryMeasurementsStorage === SOPClassUID) {
+    naturalizedName = 'LensometryMeasurements';
+  } else if (
+    sopClassDictionary.AutorefractionMeasurementsStorage === SOPClassUID
+  ) {
+    naturalizedName = 'AutorefractionMeasurements';
+  } else if (
+    sopClassDictionary.KeratometryMeasurementsStorage === SOPClassUID
+  ) {
+    naturalizedName = 'KeratometryMeasurements';
+  } else if (
+    sopClassDictionary.SubjectiveRefractionMeasurementsStorage === SOPClassUID
+  ) {
+    naturalizedName = 'SubjectiveRefractionMeasurements';
+  } else if (
+    sopClassDictionary.VisualAcuityMeasurementsStorage === SOPClassUID
+  ) {
+    naturalizedName = 'VisualAcuityMeasurements';
+  } else if (
+    sopClassDictionary.SpectaclePrescriptionReportStorage === SOPClassUID
+  ) {
+    naturalizedName = 'SpectaclePrescriptionReport';
+  } else if (
+    sopClassDictionary.OphthalmicAxialMeasurementsStorage === SOPClassUID
+  ) {
+    naturalizedName = 'OphthalmicAxialMeasurements';
+  } else if (
+    sopClassDictionary.IntraocularLensCalculationsStorage === SOPClassUID
+  ) {
+    naturalizedName = 'IntraocularLensCalculations';
+  } else if (
+    sopClassDictionary.MacularGridThicknessandVolumeReport === SOPClassUID
+  ) {
+    naturalizedName = 'MacularGridThicknessandVolume';
+  } else if (
+    sopClassDictionary.OphthalmicVisualFieldStaticPerimetryMeasurementsStorage ===
+    SOPClassUID
+  ) {
+    naturalizedName = 'OphthalmicVisualFieldStaticPerimetryMeasurements';
+  } else if (sopClassDictionary.OphthalmicThicknessMapStorage === SOPClassUID) {
+    naturalizedName = 'OphthalmicThicknessMap';
+  } else if (sopClassDictionary.CornealTopographyMapStorage === SOPClassUID) {
+    naturalizedName = 'CornealTopographyMap';
+  } else if (sopClassDictionary.BasicTextSR === SOPClassUID) {
+    naturalizedName = 'BasicTextSR';
+  } else if (sopClassDictionary.EnhancedSR === SOPClassUID) {
+    naturalizedName = 'EnhancedSR';
+  } else if (sopClassDictionary.ComprehensiveSR === SOPClassUID) {
+    naturalizedName = 'ComprehensiveSR';
+  } else if (sopClassDictionary.Comprehensive3DSR === SOPClassUID) {
+    naturalizedName = 'Comprehensive3DSR';
+  } else if (sopClassDictionary.ProcedureLog === SOPClassUID) {
+    naturalizedName = 'ProcedureLog';
+  } else if (sopClassDictionary.MammographyCADSR === SOPClassUID) {
+    naturalizedName = 'MammographyCADSR';
+  } else if (sopClassDictionary.KeyObjectSelection === SOPClassUID) {
+    naturalizedName = 'KeyObject';
+  } else if (sopClassDictionary.ChestCADSR === SOPClassUID) {
+    naturalizedName = 'ChestCADSR';
+  } else if (sopClassDictionary.XRayRadiationDoseSR === SOPClassUID) {
+    naturalizedName = 'XRayRadiationDoseSR';
+  } else if (
+    sopClassDictionary.RadiopharmaceuticalRadiationDoseSR === SOPClassUID
+  ) {
+    naturalizedName = 'RadiopharmaceuticalRadiationDoseSR';
+  } else if (sopClassDictionary.ColonCADSR === SOPClassUID) {
+    naturalizedName = 'ColonCADSR';
+  } else if (
+    sopClassDictionary.ImplantationPlanSRDocumentStorage === SOPClassUID
+  ) {
+    naturalizedName = 'ImplantationPlanSRDocument';
+  } else if (sopClassDictionary.EncapsulatedPDFStorage === SOPClassUID) {
+    naturalizedName = 'EncapsulatedPDF';
+  } else if (sopClassDictionary.EncapsulatedCDAStorage === SOPClassUID) {
+    naturalizedName = 'EncapsulatedCDA';
+  } else if (sopClassDictionary.BasicStructuredDisplayStorage === SOPClassUID) {
+    naturalizedName = 'BasicStructuredDisplay';
+  } else if (sopClassDictionary.RTDoseStorage === SOPClassUID) {
+    naturalizedName = 'RTDose';
+  } else if (sopClassDictionary.RTStructureSetStorage === SOPClassUID) {
+    naturalizedName = 'RTStructureSet';
+  } else if (sopClassDictionary.RTBeamsTreatmentRecordStorage === SOPClassUID) {
+    naturalizedName = 'RTBeamsTreatmentRecord';
+  } else if (sopClassDictionary.RTPlanStorage === SOPClassUID) {
+    naturalizedName = 'RTPlan';
+  } else if (
+    sopClassDictionary.RTBrachyTreatmentRecordStorage === SOPClassUID
+  ) {
+    naturalizedName = 'RTBrachyTreatmentRecord';
+  } else if (
+    sopClassDictionary.RTTreatmentSummaryRecordStorage === SOPClassUID
+  ) {
+    naturalizedName = 'RTTreatmentSummaryRecord';
+  } else if (sopClassDictionary.RTIonPlanStorage === SOPClassUID) {
+    naturalizedName = 'RTIonPlan';
+  } else if (
+    sopClassDictionary.RTIonBeamsTreatmentRecordStorage === SOPClassUID
+  ) {
+    naturalizedName = 'RTIonBeamsTreatmentRecord';
+  } else if (
+    sopClassDictionary.RTBeamsDeliveryInstructionStorage === SOPClassUID
+  ) {
+    naturalizedName = 'RTBeamsDeliveryInstruction';
+  } else if (sopClassDictionary.GenericImplantTemplateStorage === SOPClassUID) {
+    naturalizedName = 'GenericImplantTemplate';
+  } else if (
+    sopClassDictionary.ImplantAssemblyTemplateStorage === SOPClassUID
+  ) {
+    naturalizedName = 'ImplantAssemblyTemplate';
+  } else if (sopClassDictionary.ImplantTemplateGroupStorage === SOPClassUID) {
+    naturalizedName = 'ImplantTemplateGroup';
+  }
+
+  return naturalizedName;
+};

platform/ui/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.10.8](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.7...@ohif/ui@1.10.8) (2022-04-06)
+
+**Note:** Version bump only for package @ohif/ui
+
+
+
+
+
 ## [1.10.7](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.6...@ohif/ui@1.10.7) (2022-03-14)
 
 

platform/ui/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/ui",
-  "version": "1.10.7",
+  "version": "1.10.8",
   "description": "A set of React components for Medical Imaging Viewers",
   "author": "OHIF Contributors",
   "license": "MIT",

platform/ui/src/components/studyBrowser/Thumbnail.js

@@ -177,8 +177,10 @@ function Thumbnail(props) {
       const { progressId, progressData } = detail;
       if (`StackProgress:${displaySetInstanceUID}` === progressId) {
         const percent = progressData ? progressData.percentComplete : 0;
+        if (percent > stackPercentComplete) {
           setStackPercentComplete(percent);
         }
+      }
     }, 100);
 
     document.addEventListener(

platform/ui/src/components/studyBrowser/Thumbnail.styl

@@ -25,7 +25,8 @@
     box-shadow: inset 0 0 0 1px var(--ui-border-color-dark);
     border: 2px solid transparent;
     border-radius: 12px;
-    height: 135px;
+    min-height: 135px;
+    max-height: 250px;
     margin: 0 auto;
     padding: 5px;
     position: relative;
@@ -36,6 +37,11 @@
     h1
       text-align: center
       color: var(--text-primary-color);
+      max-width: 200px;
+      max-height: 250px;
+      overflow-wrap: break-word;
+      word-wrap: break-word;
+      hyphens: auto;
 
   .series-details
     display: flex;

platform/viewer/CHANGELOG.md

@@ -3,6 +3,30 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [4.12.26](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.25...@ohif/viewer@4.12.26) (2022-04-22)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.25](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.24...@ohif/viewer@4.12.25) (2022-04-06)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.24](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.23...@ohif/viewer@4.12.24) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
 ## [4.12.23](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.22...@ohif/viewer@4.12.23) (2022-03-25)
 
 **Note:** Version bump only for package @ohif/viewer

platform/viewer/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/viewer",
-  "version": "4.12.23",
+  "version": "4.12.26",
   "description": "OHIF Viewer",
   "author": "OHIF Contributors",
   "license": "MIT",
@@ -47,18 +47,18 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",
-    "@ohif/core": "^2.16.15",
+    "@ohif/core": "^2.16.18",
-    "@ohif/extension-cornerstone": "^2.12.9",
+    "@ohif/extension-cornerstone": "^2.12.10",
     "@ohif/extension-debugging": "^0.3.2",
-    "@ohif/extension-dicom-html": "^1.3.20",
+    "@ohif/extension-dicom-html": "^1.3.21",
     "@ohif/extension-dicom-microscopy": "^0.52.0",
     "@ohif/extension-dicom-pdf": "^1.1.2",
-    "@ohif/extension-dicom-rt": "^0.7.10",
+    "@ohif/extension-dicom-rt": "^0.7.11",
-    "@ohif/extension-dicom-segmentation": "^0.7.10",
+    "@ohif/extension-dicom-segmentation": "^0.7.11",
     "@ohif/extension-lesion-tracker": "^0.2.1",
-    "@ohif/extension-vtk": "^1.12.20",
+    "@ohif/extension-vtk": "^1.12.23",
     "@ohif/i18n": "^0.53.0",
-    "@ohif/ui": "^1.10.7",
+    "@ohif/ui": "^1.10.8",
     "@tanem/react-nprogress": "^1.1.25",
     "classnames": "^2.2.6",
     "core-js": "^3.2.1",
@@ -66,7 +66,7 @@
     "cornerstone-math": "^0.1.9",
     "cornerstone-tools": "^6.0.6",
     "cornerstone-wado-image-loader": "^4.1.0",
-    "dcmjs": "0.19.8",
+    "dcmjs": "0.19.9",
     "dicom-parser": "^1.8.11",
     "dicomweb-client": "^0.8.3",
     "hammerjs": "^2.0.8",

platform/viewer/public/config/default.js

@@ -30,6 +30,7 @@ window.config = {
       },
     ],
   },
+
   // Extensions should be able to suggest default values for these?
   // Or we can require that these be explicitly set
   hotkeys: [

platform/viewer/src/connectedComponents/ConnectedStudyBrowser.js

@@ -79,7 +79,7 @@ const mapDispatchToProps = (dispatch, ownProps) => {
         });
       }
 
-      if (displaySet.isModalitySupported === false) {
+      if (displaySet.isSOPClassUIDSupported === false) {
         const error = new Error('Modality not supported');
         const message = 'Modality not supported';
         LoggerService.error({ error, message });

platform/viewer/src/connectedComponents/Viewer.js

@@ -105,6 +105,11 @@ class Viewer extends Component {
     if (this.props.dialog) {
       this.props.dialog.dismissAll();
     }
+
+    document.removeEventListener(
+      'segmentationLoadingError',
+      this._updateThumbnails
+    );
   }
 
   retrieveTimepoints = filter => {
@@ -212,6 +217,12 @@ class Viewer extends Component {
         ),
       });
     }
+
+    document.addEventListener(
+      'segmentationLoadingError',
+      this._updateThumbnails.bind(this),
+      false
+    );
   }
 
   componentDidUpdate(prevProps) {
@@ -255,6 +266,20 @@ class Viewer extends Component {
     }
   }
 
+  _updateThumbnails() {
+    const { studies, activeViewportIndex, viewports } = this.props;
+
+    const activeViewport = viewports[activeViewportIndex];
+    const activeDisplaySetInstanceUID = activeViewport
+      ? activeViewport.displaySetInstanceUID
+      : undefined;
+
+    this.setState({
+      thumbnails: _mapStudiesToThumbnails(studies, activeDisplaySetInstanceUID),
+      activeDisplaySetInstanceUID,
+    });
+  }
+
   _getActiveViewport() {
     return this.props.viewports[this.props.activeViewportIndex];
   }
@@ -461,9 +486,7 @@ const _checkForDerivedDisplaySets = async function(displaySet, study) {
 /**
  * Async function to check if there are any inconsistences in the series.
  *
- * For segmentation checks that the geometry is consistent with the source images:
+ * For segmentation returns any error during loading.
- * 1) no frames out of plane;
- * 2) have the same width and height.
  *
  * For reconstructable 3D volume:
  * 1) Is series multiframe?
@@ -477,10 +500,7 @@ const _checkForDerivedDisplaySets = async function(displaySet, study) {
  * @param {*object} displaySet
  * @returns {[string]} an array of strings containing the warnings
  */
-const _checkForSeriesInconsistencesWarnings = async function(
+const _checkForSeriesInconsistencesWarnings = async function(displaySet) {
-  displaySet,
-  studies
-) {
   if (displaySet.inconsistencyWarnings) {
     // warnings already checked and cached in displaySet
     return displaySet.inconsistencyWarnings;
@@ -543,101 +563,17 @@ const _checkForSeriesInconsistencesWarnings = async function(
       );
     }
 
-    if (displaySet.isModalitySupported === false) {
+    if (displaySet.isSOPClassUIDSupported === false) {
-      inconsistencyWarnings.push('The datasets modality is not supported.');
+      inconsistencyWarnings.push('The datasets is not supported.');
     }
-  } else {
-    const segMetadata = displaySet.metadata;
-    if (!segMetadata) {
-      return inconsistencyWarnings;
-    }
-
-    const { referencedDisplaySet } = displaySet.getSourceDisplaySet(
-      studies,
-      false
-    );
-    if (!referencedDisplaySet) {
-      return inconsistencyWarnings;
-    }
-
-    const imageIds = referencedDisplaySet.images.map(image =>
-      image.getImageId()
-    );
-    if (!imageIds || imageIds.length === 0) {
-      return inconsistencyWarnings;
-    }
-
-    for (
-      let i = 0,
-        groupsLen = segMetadata.PerFrameFunctionalGroupsSequence.length;
-      i < groupsLen;
-      ++i
-    ) {
-      const PerFrameFunctionalGroups =
-        segMetadata.PerFrameFunctionalGroupsSequence[i];
-      if (!PerFrameFunctionalGroups) {
-        continue;
-      }
-
-      let SourceImageSequence = undefined;
-      if (segMetadata.SourceImageSequence) {
-        SourceImageSequence = segMetadata.SourceImageSequence[i];
-      } else if (PerFrameFunctionalGroups.DerivationImageSequence) {
-        SourceImageSequence =
-          PerFrameFunctionalGroups.DerivationImageSequence.SourceImageSequence;
-      }
-      if (!SourceImageSequence) {
-        if (inconsistencyWarnings.length === 0) {
-          const warningMessage =
-            'The segmentation ' +
-            'has frames out of plane respect to the source images.';
-          inconsistencyWarnings.push(warningMessage);
-        }
-        continue;
-      }
-
-      const { ReferencedSOPInstanceUID } = SourceImageSequence;
-
-      const imageId = imageIds.find(imageId => {
-        const sopCommonModule = cornerstone.metaData.get(
-          'sopCommonModule',
-          imageId
-        );
-        if (!sopCommonModule) {
-          return;
-        }
-
-        return sopCommonModule.sopInstanceUID === ReferencedSOPInstanceUID;
-      });
-
-      if (!imageId) {
-        continue;
-      }
-
-      const sourceImageMetadata = cornerstone.metaData.get('instance', imageId);
-      if (
-        segMetadata.Rows !== sourceImageMetadata.Rows ||
-        segMetadata.Columns !== sourceImageMetadata.Columns
-      ) {
-        const warningMessage =
-          'The segmentation ' +
-          'has frames with different geometry ' +
-          'dimensions (Rows and Columns) respect to the source images.';
-        inconsistencyWarnings.push(warningMessage);
-        break;
-      }
-    }
-
-    if (inconsistencyWarnings.length !== 0) {
-      const warningMessage =
-        'The segmentation format is not supported yet. ' +
-        'The segmentation data (segments) could not be loaded.';
-      inconsistencyWarnings.push(warningMessage);
-    }
-  }
-
-  // cache the warnings
     displaySet.inconsistencyWarnings = inconsistencyWarnings;
+  } else {
+    if (displaySet.loadError) {
+      inconsistencyWarnings.push(displaySet.segLoadErrorMessagge);
+      displaySet.inconsistencyWarnings = inconsistencyWarnings;
+    }
+  }
+
   return inconsistencyWarnings;
 };
 
@@ -732,14 +668,13 @@ const _mapStudiesToThumbnails = function(studies, activeDisplaySetInstanceUID) {
       } else if (displaySet.images && displaySet.images.length) {
         const imageIndex = Math.floor(displaySet.images.length / 2);
         imageId = displaySet.images[imageIndex].getImageId();
+      } else if (displaySet.isSOPClassUIDSupported === false) {
+        altImageText = displaySet.SOPClassUIDNaturalized;
       } else {
         altImageText = displaySet.Modality ? displaySet.Modality : 'UN';
       }
 
-      const hasWarnings = _checkForSeriesInconsistencesWarnings(
+      const hasWarnings = _checkForSeriesInconsistencesWarnings(displaySet);
-        displaySet,
-        studies
-      );
 
       const hasDerivedDisplaySets = _checkForDerivedDisplaySets(
         displaySet,

platform/viewer/src/connectedComponents/ViewerMain.js

@@ -154,12 +154,25 @@ class ViewerMain extends Component {
           });
         };
 
-        const { referencedDisplaySet } = displaySet.getSourceDisplaySet(
+        const {
+          referencedDisplaySet,
+          activatedLabelmapPromise,
+        } = displaySet.getSourceDisplaySet(
           this.props.studies,
           true,
           onDisplaySetLoadFailureHandler
         );
         displaySet = referencedDisplaySet;
+
+        activatedLabelmapPromise.then(activatedLabelmapIndex => {
+          const selectionFired = new CustomEvent(
+            'extensiondicomsegmentationsegselected',
+            {
+              detail: { activatedLabelmapIndex: activatedLabelmapIndex },
+            }
+          );
+          document.dispatchEvent(selectionFired);
+        });
       } else {
         displaySet = displaySet.getSourceDisplaySet(this.props.studies);
       }
@@ -177,7 +190,7 @@ class ViewerMain extends Component {
       }
     }
 
-    if (displaySet.isModalitySupported === false) {
+    if (displaySet.isSOPClassUIDSupported === false) {
       const error = new Error('Modality not supported');
       const message = 'Modality not supported';
       LoggerService.error({ error, message });

platform/viewer/src/googleCloud/DicomStorePickerModal.js

@@ -36,7 +36,7 @@ function DicomStorePickerModal({
           user,
           url,
         },
-        onClose
+        onClose,
       });
     }
   };

yarn.lock

@@ -5449,10 +5449,10 @@ dateformat@^3.0.0:
   resolved "https://registry.yarnpkg.com/dateformat/-/dateformat-3.0.3.tgz#a6e37499a4d9a9cf85ef5872044d62901c9889ae"
   integrity sha512-jyCETtSl3VMZMWeRo7iY1FL19ges1t55hMo5yaam4Jrsm5EPL89UQkoQRyiI+Yf4k8r2ZpdngkV8hr1lIdjb3Q==
 
-dcmjs@0.19.8:
+dcmjs@0.19.9:
-  version "0.19.8"
+  version "0.19.9"
-  resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.19.8.tgz#9be7471f8f2e20d4e09489b5f0c51dfa56621ec1"
+  resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.19.9.tgz#be500101b1f75a28ea9eb7ef845a8ed197355e76"
-  integrity sha512-po/GWh7pXF+diO/umpqOfpF0Kk7MzAmhFlscOR+KchCIZbN0pmt2npFT3p8jMii/FBre++k+8PIvFa/LKh0P2A==
+  integrity sha512-V+0tND+SPX5e7WFeLzeoooaTsZbiKmEP2i3AyERsojaXXfaDV5E+pta5IqId4Ok1yfRT5qfTFwLGstGT6nLplA==
   dependencies:
     "@babel/polyfill" "^7.8.3"
     "@babel/runtime" "^7.8.4"