chore(release): publish [skip ci]

- @ohif/extension-dicom-tag-browser@0.2.26
 - @ohif/extension-vtk@1.12.42
 - @ohif/ui@1.10.11
 - @ohif/viewer@4.12.51

.github/ISSUE_TEMPLATE/---bug-report.md

@@ -2,23 +2,21 @@
 name: "\U0001F41B Bug report"
 about: Create a report to help us improve
 title: ''
-labels: 'Community: Report :bug:, Awaiting Reproduction, Triage :white_flag:'
+labels: 'Community: Report :bug:, Awaiting Reproduction'
 assignees: ''
 ---
 
-> **Before Creating an issue**
+<!-- ⚠️⚠️ Do Not Delete This! bug_report_template ⚠️⚠️ -->
->
+<!-- Please read our Rules of Conduct: https://github.com/OHIF/Viewers/blob/master/CODE_OF_CONDUCT.md -->
-> - Are you running the latest version?
+<!-- 🕮 Read our guide about our process: https://v3-docs.ohif.org/development/our-process -->
-> - Are you reporting to the correct repository?
+<!-- 🔎 Search existing issues to avoid creating duplicates. -->
-> - Did you search existing issues?
+<!-- 🧪 Test using the latest version -->
-
-## Bug Report
 
 ### Describe the Bug
 
 _A clear and concise description of what the bug is._
 
-### What steps can we follow to reproduce the bug?
+### Steps to Reproduce:
 
 1. First step
 2. Second step
@@ -28,6 +26,15 @@ _A clear and concise description of what the bug is._
 Please use code blocks to show formatted errors or code snippets
 ```
 
+### The current behavior
+
+_A clear and concise description of what happens instead of the expected
+behavior._
+
+### The expected behavior
+
+_A clear and concise description of what you expected to happen._
+
 > :warning: Reports we cannot reproduce are at risk of being marked stale and
 > closed. The more information you can provide, the more likely we are to look
 > into and address your issue.

.github/ISSUE_TEMPLATE/---feature-request.md

@@ -2,19 +2,28 @@
 name: "\U0001F680 Feature request"
 about: Suggest an idea for this project
 title: ''
-labels: 'Community: Request :hand:, Triage :white_flag:'
+labels: 'Community: Request :hand:'
 assignees: ''
 ---
 
-> :hand: Many people requests features. Tell us why yours is important to the
+<!-- ⚠️⚠️ Do Not Delete This! feature_request_template ⚠️⚠️ -->
+<!-- Please read our Rules of Conduct: https://github.com/OHIF/Viewers/blob/master/CODE_OF_CONDUCT.md -->
+
+<!-- :hand: Many people requests features. Tell us why yours is important to the
 > community. How does it add value? Why _this feature_?
 >
 > Is your request very specific to your needs? Consider
-> [contributing it](https://docs.ohif.org/contributing.html) yourself! Or reach
+> [contributing it](https://v3-docs.ohif.org/development/contributing) yourself!
-> out to a community member that offers
+> Or reach out to a community member that offers
 > [consulting services](https://docs.ohif.org/help.html#paid--commercial).
+-->
 
-## Request
+### Request
+
+<!--
+Please include as much detail as possible including possibly mock up screen shots, workflow or logic flow diagrams etc.
+Discuss if and how the requested feature interacts with existing features
+-->
 
 **What feature or change would you like to see made?**
 

.github/pull_request_template.md

@@ -1,14 +1,91 @@
-### PR Checklist
+<!-- Do Not Delete This! pr_template -->
-
+<!-- Please read our Rules of Conduct: https://github.com/OHIF/Viewers/blob/master/CODE_OF_CONDUCT.md -->
-- [ ] Brief description of changes
+<!-- 🕮 Read our guide about our Contributing Guide here https://v3-docs.ohif.org/development/contributing -->
-- [ ] Links to any relevant issues
+<!-- :hand: Thank you for starting this amazing contribution! -->
-- [ ] Required status checks are passing
-- [ ] User cases if changes impact the user's experience
-- [ ] `@mention` a maintainer to request a review
 
 <!--
-  Links
+⚠️⚠️ Please make sure the checklist section below is complete before submitting your PR.
-  -->
+To complete the checklist, add an 'x' to each item: [] -> [x]
+(PRs that do not have all the checkboxes marked will not be approved)
+-->
+
+### Context
+
+<!--
+Provide a clear explanation of the reasoning behind this change, such as:
+- A link to the issue being addressed, using the format "Fixes #ISSUE_NUMBER"
+- An image showing the issue or problem being addressed (if not already in the issue)
+- Error logs or callStacks to help with the understanding of the problem (if not already in the issue)
+-->
+
+### Changes & Results
+
+<!--
+List all the changes that have been done, such as:
+- Add new components
+- Remove old components
+- Update dependencies
+
+What are the effects of this change?
+- Before vs After
+- Screenshots / GIFs / Videos
+-->
+
+### Testing
+
+<!--
+Describe how we can test your changes.
+- open a URL
+- visit a page
+- click on a button
+- etc.
+-->
+
+### Checklist
+
+#### PR
+
+<!--
+https://semantic-release.gitbook.io/semantic-release/#how-does-it-work
+
+Examples:
+Please note the letter casing in the provided examples (upper or lower).
+
+- feat(MeasurementService): add ...
+- fix(Toolbar): fix ...
+- docs(Readme): update ...
+- style(Whitespace): fix ...
+- refactor(ExtensionManager): ...
+- test(HangingProtocol): Add test ...
+- chore(git): update ...
+- perf(VolumeLoader): ...
+
+You don't need to have each commit within the Pull Request follow the rule,
+but the PR title must comply with it, as it will be used as the commit message
+after the commits are squashed.
+-->
+
+- [] My Pull Request title is descriptive, accurate and follows the
+  semantic-release format and guidelines.
+
+#### Code
+
+- [] My code has been well-documented (function documentation, inline comments,
+  etc.)
+
+#### Public Documentation Updates
+
+<!-- https://v3-docs.ohif.org/ -->
+
+- [] The documentation page has been updated as necessary for any public API
+  additions or removals.
+
+#### Tested Environment
+
+- [] "OS: <!--[e.g. Windows 10, macOS 10.15.4]"-->
+- [] "Node version: <!--[e.g. 16.14.0]"-->
+- [] "Browser:
+  <!--[e.g. Chrome 83.0.4103.116, Firefox 77.0.1, Safari 13.1.1]"-->
 
 <!-- prettier-ignore-start -->
 [blog]: https://circleci.com/blog/triggering-trusted-ci-jobs-on-untrusted-forks/

.github/stale.yml

@@ -4,23 +4,17 @@
 # Number of days of inactivity before an issue becomes stale
 daysUntilStale: 180
 # Number of days of inactivity before a stale issue is closed
-daysUntilClose: 9000
+daysUntilClose: 60
 # Issues with these labels will never be considered stale
 exemptLabels:
-  - 'Story :raised_hands:'
   - 'Bug: Verified :bug:'
-  - 'Task: CI/Tooling :robot:'
-  - 'Task: Docs 📖'
-  - 'Task: Docs :book:'
-  - 'Task: Refactor :hammer_and_wrench:'
-  - 'Task: Tests :microscope:'
   - 'PR: Awaiting Review 👀'
-  - 'Triage :white_flag:'
-  - 'Extension: Discussion'
   - 'Announcement 🎉'
   - 'IDC:priority'
   - 'IDC:candidate'
   - 'IDC:collaboration'
+  - 'Community: Request :hand:'
+  - 'Community: Report :bug:'
 # Label to use when marking an issue as stale
 staleLabel: 'Stale :baguette_bread:'
 # Comment to post when marking an issue as stale. Set to `false` to disable

docs/latest/package.json

@@ -40,5 +40,10 @@
   },
   "devDependencies": {
     "gitbook-cli": "^2.3.2"
+  },
+  "resolutions": {
+    "underscore": "1.12.1",
+    "json-schema": "0.4.0",
+    "minimist": "1.2.8"
   }
 }

docs/latest/yarn.lock

@@ -1481,10 +1481,10 @@ json-schema-traverse@^0.4.1:
   resolved "https://registry.yarnpkg.com/json-schema-traverse/-/json-schema-traverse-0.4.1.tgz#69f6a87d9513ab8bb8fe63bdb0979c448e684660"
   integrity sha512-xbbCH5dCYU5T8LcEhhuh7HJ88HXuW3qsI3Y0zOZFKfZEHcpWiHU/Jxzk629Brsab/mMiHQti9wMP+845RPe3Vg==
 
-json-schema@0.2.3:
+json-schema@0.2.3, json-schema@0.4.0:
-  version "0.2.3"
+  version "0.4.0"
-  resolved "https://registry.yarnpkg.com/json-schema/-/json-schema-0.2.3.tgz#b480c892e59a2f05954ce727bd3f2a4e882f9e13"
+  resolved "https://registry.yarnpkg.com/json-schema/-/json-schema-0.4.0.tgz#f7de4cf6efab838ebaeb3236474cbba5a1930ab5"
-  integrity sha1-tIDIkuWaLwWVTOcnvT8qTogvnhM=
+  integrity sha512-es94M3nTIfsEPisRafak+HDLfHXnKBhV3vU5eqPcS3flIWqcxJWgXHXiey3YrpaNsanY5ei1VoYEbOzijuq9BA==
 
 json-stable-stringify@^1.0.1:
   version "1.0.1"
@@ -1729,27 +1729,24 @@ mime-types@^2.1.11, mime-types@^2.1.12, mime-types@~2.1.19, mime-types@~2.1.7:
   dependencies:
     mime-db "~1.38.0"
 
-minimatch@^3.0.0, minimatch@^3.0.2, minimatch@^3.0.4, minimatch@~3.0.3:
+minimatch@^3.0.0, minimatch@^3.0.2, minimatch@^3.0.4:
-  version "3.0.4"
+  version "3.1.2"
-  resolved "https://registry.yarnpkg.com/minimatch/-/minimatch-3.0.4.tgz#5166e286457f03306064be5497e8dbb0c3d32083"
+  resolved "https://registry.yarnpkg.com/minimatch/-/minimatch-3.1.2.tgz#19cd194bfd3e428f049a70817c038d89ab4be35b"
-  integrity sha512-yJHVQEhyqPLUTgt9B83PXu6W3rx4MvvHvSUvToogpwoGDOUQ+yDrR0HRot+yOCdCO7u4hX3pWft6kWBBcqh0UA==
+  integrity sha512-J7p63hRiAjw1NDEww1W7i37+ByIrOWO5XQQAzZ3VOcL0PNybwpfmV/N05zFAzwQ9USyEcX6t3UO+K5aqBQOIHw==
   dependencies:
     brace-expansion "^1.1.7"
 
-minimist@0.0.8:
+minimatch@~3.0.3:
-  version "0.0.8"
+  version "3.0.8"
-  resolved "https://registry.yarnpkg.com/minimist/-/minimist-0.0.8.tgz#857fcabfc3397d2625b8228262e86aa7a011b05d"
+  resolved "https://registry.yarnpkg.com/minimatch/-/minimatch-3.0.8.tgz#5e6a59bd11e2ab0de1cfb843eb2d82e546c321c1"
-  integrity sha1-hX/Kv8M5fSYluCKCYuhqp6ARsF0=
+  integrity sha512-6FsRAQsxQ61mw+qP1ZzbL9Bc78x2p5OqNgNpnoAFLTrX8n5Kxph0CsnhmKKNXTWjXqU5L0pGPR7hYk+XWZr60Q==
+  dependencies:
+    brace-expansion "^1.1.7"
 
-minimist@^1.2.0:
+minimist@0.0.8, minimist@1.2.8, minimist@^1.2.0, minimist@~0.0.1:
-  version "1.2.0"
+  version "1.2.8"
-  resolved "https://registry.yarnpkg.com/minimist/-/minimist-1.2.0.tgz#a35008b20f41383eec1fb914f4cd5df79a264284"
+  resolved "https://registry.yarnpkg.com/minimist/-/minimist-1.2.8.tgz#c1a464e7693302e082a075cee0c057741ac4772c"
-  integrity sha1-o1AIsg9BOD7sH7kU9M1d95omQoQ=
+  integrity sha512-2yyAR8qBkN3YuheJanUpWC5U3bb5osDywNB8RzDVlDwDHbocAJveqqj1u8+SVD7jkWT4yvsHCpWqqWqAxb0zCA==
-
-minimist@~0.0.1:
-  version "0.0.10"
-  resolved "https://registry.yarnpkg.com/minimist/-/minimist-0.0.10.tgz#de3f98543dbf96082be48ad1a0c7cda836301dcf"
-  integrity sha1-3j+YVD2/lggr5IrRoMfNqDYwHc8=
 
 mississippi@^1.2.0, mississippi@^1.3.0, mississippi@~1.3.0:
   version "1.3.1"
@@ -2491,19 +2488,19 @@ q@1.5.0:
   integrity sha1-3QG6ydBtMObyGa7LglPunr3DCPE=
 
 qs@~6.2.0:
-  version "6.2.3"
+  version "6.2.4"
-  resolved "https://registry.yarnpkg.com/qs/-/qs-6.2.3.tgz#1cfcb25c10a9b2b483053ff39f5dfc9233908cfe"
+  resolved "https://registry.yarnpkg.com/qs/-/qs-6.2.4.tgz#d90821bb8537cecc140e6c34f54ec76e54b39b22"
-  integrity sha1-HPyyXBCpsrSDBT/zn138kjOQjP4=
+  integrity sha512-E57gmgKXqDda+qWTkUJgIwgJICK7zgMfqZZopTRKZ6mY9gzLlmJN9EpXNnDrTxXFlOM/a+I28kJkF/60rqgnYw==
 
 qs@~6.4.0:
-  version "6.4.0"
+  version "6.4.1"
-  resolved "https://registry.yarnpkg.com/qs/-/qs-6.4.0.tgz#13e26d28ad6b0ffaa91312cd3bf708ed351e7233"
+  resolved "https://registry.yarnpkg.com/qs/-/qs-6.4.1.tgz#2bad97710a5b661c366b378b1e3a44a592ff45e6"
-  integrity sha1-E+JtKK1rD/qpExLNO/cI7TUecjM=
+  integrity sha512-LQy1Q1fcva/UsnP/6Iaa4lVeM49WiOitu2T4hZCyA/elLKu37L99qcBJk4VCCk+rdLvnMzfKyiN3SZTqdAZGSQ==
 
 qs@~6.5.2:
-  version "6.5.2"
+  version "6.5.3"
-  resolved "https://registry.yarnpkg.com/qs/-/qs-6.5.2.tgz#cb3ae806e8740444584ef154ce8ee98d403f3e36"
+  resolved "https://registry.yarnpkg.com/qs/-/qs-6.5.3.tgz#3aeeffc91967ef6e35c0e488ef46fb296ab76aad"
-  integrity sha512-N5ZAX4/LxJmF+7wN74pUD6qAh9/wnvdQcjq9TZjevvXzSUo7bfmw91saqMjzGS2xq91/odN2dW/WOl7qQHNDGA==
+  integrity sha512-qxXIEh4pCGfHICj1mAJQ2/2XVZkjCDTcEgfoSQxc/fYivUZxTkk7L3bDBJSoNrEzXI17oUO5Dp07ktqE5KzczA==
 
 rc@^1.0.1, rc@^1.1.6:
   version "1.2.8"
@@ -3175,10 +3172,10 @@ umask@~1.1.0:
   resolved "https://registry.yarnpkg.com/umask/-/umask-1.1.0.tgz#f29cebf01df517912bb58ff9c4e50fde8e33320d"
   integrity sha1-8pzr8B31F5ErtY/5xOUP3o4zMg0=
 
-underscore@^1.7.0:
+underscore@1.12.1, underscore@^1.7.0:
-  version "1.9.1"
+  version "1.12.1"
-  resolved "https://registry.yarnpkg.com/underscore/-/underscore-1.9.1.tgz#06dce34a0e68a7babc29b365b8e74b8925203961"
+  resolved "https://registry.yarnpkg.com/underscore/-/underscore-1.12.1.tgz#7bb8cc9b3d397e201cf8553336d262544ead829e"
-  integrity sha512-5/4etnCkd9c8gwgowi5/om/mYO5ajCaOgdzj/oW+0eQV9WxKBDZw5+ycmKmeaTXjInS/W0BzpGLo2xR2aBwZdg==
+  integrity sha512-hEQt0+ZLDVUMhebKxL4x1BTtDY7bavVofhZ9KZ4aI26X9SRaE+Y3m83XUL1UP2jn8ynjndwCCpEHdUG+9pP1Tw==
 
 unique-filename@^1.1.0, unique-filename@~1.1.0:
   version "1.1.1"

extensions/cornerstone/CHANGELOG.md

@@ -3,6 +3,70 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [2.12.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.15...@ohif/extension-cornerstone@2.12.16) (2022-12-21)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+## [2.12.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.14...@ohif/extension-cornerstone@2.12.15) (2022-09-20)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+## [2.12.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.13...@ohif/extension-cornerstone@2.12.14) (2022-09-01)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+## [2.12.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.12...@ohif/extension-cornerstone@2.12.13) (2022-06-30)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+## [2.12.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.11...@ohif/extension-cornerstone@2.12.12) (2022-06-29)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+## [2.12.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.10...@ohif/extension-cornerstone@2.12.11) (2022-06-14)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+## [2.12.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.9...@ohif/extension-cornerstone@2.12.10) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+## [2.12.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.8...@ohif/extension-cornerstone@2.12.9) (2022-03-25)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
 ## [2.12.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.7...@ohif/extension-cornerstone@2.12.8) (2022-03-14)
 
 **Note:** Version bump only for package @ohif/extension-cornerstone

extensions/cornerstone/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-cornerstone",
-  "version": "2.12.8",
+  "version": "2.12.16",
   "description": "OHIF extension for Cornerstone",
   "author": "OHIF",
   "license": "MIT",
@@ -35,8 +35,8 @@
     "cornerstone-core": "^2.6.1",
     "cornerstone-math": "^0.1.9",
     "cornerstone-tools": "^6.0.6",
-    "cornerstone-wado-image-loader": "^4.1.0",
+    "cornerstone-wado-image-loader": "^4.2.1",
-    "dcmjs": "0.19.7",
+    "dcmjs": "0.29.3",
     "dicom-parser": "^1.8.11",
     "hammerjs": "^2.0.8",
     "prop-types": "^15.6.2",
@@ -44,7 +44,8 @@
     "react-dom": "^16.8.6",
     "react-redux": "^6.0.0",
     "react-resize-detector": "^3.4.0",
-    "redux": "^4.0.1"
+    "redux": "^4.0.1",
+    "styled-components": "^5.3.5"
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",

extensions/cornerstone/src/OHIFCornerstoneViewport.js

@@ -237,11 +237,21 @@ class OHIFCornerstoneViewport extends Component {
       }
     };
 
-    const warningsOverlay = props => {
+    const overlay = props => {
+      const displaySet = this.props.viewportData.displaySet;
+      let filteredSRLabels;
+      if (displaySet.SRLabels && displaySet.SRLabels.length !== 0) {
+        filteredSRLabels = displaySet.SRLabels.filter(
+          SRLabel =>
+            SRLabel.ReferencedSOPInstanceUID === displaySet.SOPInstanceUID
+        );
+      }
+
       return (
         <OHIFCornerstoneViewportOverlay
           {...props}
           inconsistencyWarnings={inconsistencyWarnings}
+          SRLabels={filteredSRLabels}
         />
       );
     };
@@ -254,7 +264,7 @@ class OHIFCornerstoneViewport extends Component {
           imageIdIndex={currentImageIdIndex}
           onNewImageDebounced={newImageHandler}
           onNewImageDebounceTime={300}
-          viewportOverlayComponent={warningsOverlay}
+          viewportOverlayComponent={overlay}
           stackPrefetch={this.props.stackPrefetch}
           isStackPrefetchEnabled={this.props.isStackPrefetchEnabled}
           // ~~ Connected (From REDUX)

extensions/cornerstone/src/components/OHIFCornerstoneViewportOverlay.css

@@ -33,6 +33,10 @@
   bottom: 140px;
   left: 20px;
 }
+.OHIFCornerstoneViewportOverlay .bottom-left3 {
+  bottom: 110px;
+  left: -20px;
+}
 .OHIFCornerstoneViewportOverlay .bottom-right {
   bottom: 20px;
   right: 20px;

extensions/cornerstone/src/components/OHIFCornerstoneViewportOverlay.js

@@ -1,5 +1,6 @@
 import { PureComponent } from 'react';
 import React from 'react';
+import styled from 'styled-components';
 import PropTypes from 'prop-types';
 import cornerstone from 'cornerstone-core';
 import './OHIFCornerstoneViewportOverlay.css';
@@ -9,13 +10,27 @@ import {
   formatDICOMDate,
   formatDICOMTime,
   formatPN,
-  getCompression
+  getCompression,
 } from '../utils/formatStudy';
 import classNames from 'classnames';
 import { Icon } from '@ohif/ui/src/elements/Icon';
 import { Tooltip } from '@ohif/ui/src/components/tooltip';
 import { OverlayTrigger } from '@ohif/ui/src/components/overlayTrigger';
 
+const Button = styled.button`
+  color: white;
+  padding: 2px 7px;
+  border-radius: 10px;
+  outline: 0;
+  text-transform: none;
+  margin: 2px 2px;
+  cursor: pointer;
+  &:disabled {
+    cursor: default;
+    opacity: 0.9;
+  }
+`;
+
 class OHIFCornerstoneViewportOverlay extends PureComponent {
   static propTypes = {
     scale: PropTypes.number.isRequired,
@@ -30,11 +45,19 @@ class OHIFCornerstoneViewportOverlay extends PureComponent {
     imageId: PropTypes.string.isRequired,
     imageIndex: PropTypes.number.isRequired,
     stackSize: PropTypes.number.isRequired,
-    inconsistencyWarnings: PropTypes.array.isRequired
+    inconsistencyWarnings: PropTypes.array,
+    SRLabels: PropTypes.array,
   };
 
   render() {
-    const { imageId, scale, windowWidth, windowCenter, inconsistencyWarnings } = this.props;
+    const {
+      imageId,
+      scale,
+      windowWidth,
+      windowCenter,
+      inconsistencyWarnings,
+      SRLabels,
+    } = this.props;
 
     if (!imageId) {
       return null;
@@ -72,8 +95,11 @@ class OHIFCornerstoneViewportOverlay extends PureComponent {
 
     const { imageIndex, stackSize } = this.props;
 
-    const inconsistencyWarningsOn = inconsistencyWarnings && inconsistencyWarnings.length !== 0 ? true : false;
+    const inconsistencyWarningsOn =
-    const getWarningContent = (warningList) => {
+      inconsistencyWarnings && inconsistencyWarnings.length !== 0
+        ? true
+        : false;
+    const getWarningContent = warningList => {
       if (Array.isArray(warningList)) {
         const listedWarnings = warningList.map((warn, index) => {
           return <li key={index}>{warn}</li>;
@@ -86,7 +112,7 @@ class OHIFCornerstoneViewportOverlay extends PureComponent {
     };
 
     const getWarningInfo = (seriesNumber, inconsistencyWarnings) => {
-      return(
+      return (
         <React.Fragment>
           {inconsistencyWarnings.length != 0 ? (
             <OverlayTrigger
@@ -99,7 +125,9 @@ class OHIFCornerstoneViewportOverlay extends PureComponent {
                   id="tooltip-left"
                 >
                   <div className="warningTitle">Series Inconsistencies</div>
-                <div className="warningContent">{getWarningContent(inconsistencyWarnings)}</div>
+                  <div className="warningContent">
+                    {getWarningContent(inconsistencyWarnings)}
+                  </div>
                 </Tooltip>
               }
             >
@@ -116,6 +144,71 @@ class OHIFCornerstoneViewportOverlay extends PureComponent {
       );
     };
 
+    const SRLabelsOn = SRLabels && SRLabels.length !== 0 ? true : false;
+
+    /**/
+
+    const getSRLabelsContent = SRLabels => {
+      if (Array.isArray(SRLabels)) {
+        const listedSRLabels = SRLabels.map((SRLabel, index) => {
+          const color = SRLabel.labels.color;
+          return (
+            SRLabel.labels.visible && (
+              <OverlayTrigger
+                key={index}
+                placement="top"
+                overlay={
+                  <Tooltip
+                    placement="top"
+                    className="in tooltip-warning"
+                    id="tooltip-top"
+                  >
+                    <div className="warningTitle">
+                      {' '}
+                      Coding scheme designators{' '}
+                    </div>
+                    <div className="warningContent">
+                      {SRLabel.labels.labelCodingSchemeDesignator +
+                        ' : ' +
+                        SRLabel.labels.valueCodingSchemeDesignator}
+                    </div>
+                  </Tooltip>
+                }
+              >
+                <div style={{ display: 'inline-block' }}>
+                  <Button
+                    style={{
+                      backgroundColor: color,
+                    }}
+                    disabled={true}
+                    key={index}
+                  >
+                    {SRLabel.labels.label + ' : ' + SRLabel.labels.value}
+                  </Button>
+                </div>
+              </OverlayTrigger>
+            )
+          );
+        });
+
+        return <ol>{listedSRLabels}</ol>;
+      } else {
+        return <React.Fragment></React.Fragment>;
+      }
+    };
+
+    const getSRLabelsInfo = SRLabels => {
+      return (
+        <React.Fragment>
+          {SRLabels.length != 0 ? (
+            getSRLabelsContent(SRLabels)
+          ) : (
+            <React.Fragment></React.Fragment>
+          )}
+        </React.Fragment>
+      );
+    };
+
     const normal = (
       <React.Fragment>
         <div className="top-left overlay-element">
@@ -134,7 +227,14 @@ class OHIFCornerstoneViewportOverlay extends PureComponent {
           <div className="compressionIndicator">{compression}</div>
         </div>
         <div className="bottom-left2 warning">
-          <div>{inconsistencyWarningsOn ? getWarningInfo(seriesNumber, inconsistencyWarnings) : ''}</div>
+          <div>
+            {inconsistencyWarningsOn
+              ? getWarningInfo(seriesNumber, inconsistencyWarnings)
+              : ''}
+          </div>
+        </div>
+        <div className="bottom-left3 warning">
+          <div>{SRLabelsOn ? getSRLabelsInfo(SRLabels) : ''}</div>
         </div>
         <div className="bottom-left overlay-element">
           <div>{seriesNumber >= 0 ? `Ser: ${seriesNumber}` : ''}</div>

extensions/cornerstone/src/tools/DICOMSRDisplayTool.js

@@ -97,6 +97,8 @@ export default class DICOMSRDisplayTool extends BaseTool {
         const renderableDataForGraphicType = renderableData[GraphicType];
 
         switch (GraphicType) {
+          case SCOORD_TYPES.TEXT:
+            break;
           case SCOORD_TYPES.POINT:
             this.renderPoint(renderableDataForGraphicType, eventData, options);
             break;
@@ -167,6 +169,7 @@ export default class DICOMSRDisplayTool extends BaseTool {
         return data.handles.textBox.anchorPoints;
       }
 
+      if (data.handles.textBox.anchorPoints.length !== 0) {
         draw(context, context => {
           drawLinkedTextBox(
             context,
@@ -182,6 +185,7 @@ export default class DICOMSRDisplayTool extends BaseTool {
           );
         });
       }
+    }
 
     // TOOD -> text boxes may overlap with other annotations at the moment.
     // To be fixed after we get requirements.
@@ -230,7 +234,6 @@ export default class DICOMSRDisplayTool extends BaseTool {
     const { element, image } = eventData;
     const { rows, columns } = image;
     const context = getNewContext(eventData.canvasContext.canvas);
-
     const { color, lineWidth } = options;
 
     // Find a suitable length for the image size.
@@ -332,6 +335,8 @@ function _getTextBoxAnchorPointsForRenderableData(renderableData, eventData) {
     const renderableDataForGraphicType = renderableData[GraphicType];
 
     switch (GraphicType) {
+      case SCOORD_TYPES.TEXT:
+        break;
       case SCOORD_TYPES.POINT:
         renderableDataForGraphicType.forEach(points => {
           anchorPoints = [...anchorPoints, ...points];
@@ -405,7 +410,7 @@ function _getBoundingBoxFromAnchorPoints(anchorPoints) {
       minX = x;
     }
 
-    if (y > maxX) {
+    if (y > maxY) {
       maxY = y;
     } else if (y < minY) {
       minY = y;

extensions/cornerstone/src/tools/constants/scoordTypes.js

@@ -1,4 +1,5 @@
 export default {
+  TEXT: 'TEXT',
   POINT: 'POINT',
   MULTIPOINT: 'MULTIPOINT',
   POLYLINE: 'POLYLINE',

extensions/debugging/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.3.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.3.2...@ohif/extension-debugging@0.3.3) (2022-06-30)
+
+**Note:** Version bump only for package @ohif/extension-debugging
+
+
+
+
+
 ## [0.3.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.3.1...@ohif/extension-debugging@0.3.2) (2022-03-10)
 
 **Note:** Version bump only for package @ohif/extension-debugging

extensions/debugging/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-debugging",
-  "version": "0.3.2",
+  "version": "0.3.3",
   "description": "OHIF extension for debugging.",
   "author": "OHIF",
   "license": "MIT",

extensions/debugging/src/DebugReportModal.js

@@ -89,10 +89,10 @@ const DubugReportModal = ({
 
     Object.keys(viewportSpecificData).forEach(viewportIndex => {
       const displaySet = viewportSpecificData[viewportIndex];
-      const [
+      const [referencedDisplaySetsRef] = _getReferencedSeriesInstanceUIDsString(
-        referencedDisplaySetsRef,
+        displaySet,
-        referencedDisplaySetsCount,
+        'SEG'
-      ] = _getReferencedSeriesInstanceUIDsString(displaySet, 'SEG');
+      );
 
       const [row, column] = _viewportIndexToViewportPosition(
         viewportIndex,
@@ -106,10 +106,27 @@ const DubugReportModal = ({
 
     Object.keys(viewportSpecificData).forEach(viewportIndex => {
       const displaySet = viewportSpecificData[viewportIndex];
-      const [
+      const [referencedDisplaySetsRef] = _getReferencedSeriesInstanceUIDsString(
-        referencedDisplaySetsRef,
+        displaySet,
-        referencedDisplaySetsCount,
+        'RTSTRUCT'
-      ] = _getReferencedSeriesInstanceUIDsString(displaySet, 'RTSTRUCT');
+      );
+
+      const [row, column] = _viewportIndexToViewportPosition(
+        viewportIndex,
+        numColumns
+      );
+
+      body += `[${row},${column}]\t${referencedDisplaySetsRef}\n`;
+    });
+
+    body += '== ReferencedSRSeriesInstanceUIDs ==\n';
+
+    Object.keys(viewportSpecificData).forEach(viewportIndex => {
+      const displaySet = viewportSpecificData[viewportIndex];
+      const [referencedDisplaySetsRef] = _getReferencedSeriesInstanceUIDsString(
+        displaySet,
+        'SR'
+      );
 
       const [row, column] = _viewportIndexToViewportPosition(
         viewportIndex,
@@ -261,11 +278,15 @@ const getLayout = viewports => {
       <tr>
         <th>ReferencedSEGSeriesInstanceUIDs</th>
       </tr>
-      {getReferencedSEGSeriesInstanceUIDsPerRow(viewports)}
+      {getReferencedSeriesInstanceUIDsPerRow(viewports, 'SEG')}
       <tr>
         <th>ReferencedRTSTRUCTSeriesInstanceUIDs</th>
       </tr>
-      {getReferencedRTSTRUCTSeriesInstanceUIDsPerRow(viewports)}
+      {getReferencedSeriesInstanceUIDsPerRow(viewports, 'RTSTRUCT')}
+      <tr>
+        <th>ReferencedSRSeriesInstanceUIDs</th>
+      </tr>
+      {getReferencedSeriesInstanceUIDsPerRow(viewports, 'SR')}
     </React.Fragment>
   );
 };
@@ -351,7 +372,7 @@ const _getReferencedSeriesInstanceUIDsString = (displaySet, Modality) => {
   return [referencedDisplaySetsRef, referencedDisplaySetsCount];
 };
 
-const getReferencedSEGSeriesInstanceUIDsPerRow = viewports => {
+const getReferencedSeriesInstanceUIDsPerRow = (viewports, Modality) => {
   const { viewportSpecificData, numColumns } = viewports;
 
   // NOTE viewportSpecificData is actually an object with numerical keys.
@@ -360,43 +381,7 @@ const getReferencedSEGSeriesInstanceUIDsPerRow = viewports => {
     const [
       referencedDisplaySetsRef,
       referencedDisplaySetsCount,
-    ] = _getReferencedSeriesInstanceUIDsString(displaySet, 'SEG');
+    ] = _getReferencedSeriesInstanceUIDsString(displaySet, Modality);
-
-    const [row, column] = _viewportIndexToViewportPosition(
-      viewportIndex,
-      numColumns
-    );
-
-    if (referencedDisplaySetsCount > 1) {
-      return (
-        <tr>
-          <td>{`[${row},${column}]`}</td>
-          <td className="debug-overflowText-border">
-            {referencedDisplaySetsRef}
-          </td>
-        </tr>
-      );
-    } else {
-      return (
-        <tr>
-          <td>{`[${row},${column}]`}</td>
-          <td className="debug-overflowText">{referencedDisplaySetsRef}</td>
-        </tr>
-      );
-    }
-  });
-};
-
-const getReferencedRTSTRUCTSeriesInstanceUIDsPerRow = viewports => {
-  const { viewportSpecificData, numColumns } = viewports;
-
-  // NOTE viewportSpecificData is actually an object with numerical keys.
-  return Object.keys(viewportSpecificData).map(viewportIndex => {
-    const displaySet = viewportSpecificData[viewportIndex];
-    const [
-      referencedDisplaySetsRef,
-      referencedDisplaySetsCount,
-    ] = _getReferencedSeriesInstanceUIDsString(displaySet, 'RTSTRUCT');
 
     const [row, column] = _viewportIndexToViewportPosition(
       viewportIndex,

extensions/dicom-html/CHANGELOG.md

@@ -3,6 +3,46 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.3.24](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.23...@ohif/extension-dicom-html@1.3.24) (2022-12-21)
+
+**Note:** Version bump only for package @ohif/extension-dicom-html
+
+
+
+
+
+## [1.3.23](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.22...@ohif/extension-dicom-html@1.3.23) (2022-09-01)
+
+**Note:** Version bump only for package @ohif/extension-dicom-html
+
+
+
+
+
+## [1.3.22](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.21...@ohif/extension-dicom-html@1.3.22) (2022-06-30)
+
+**Note:** Version bump only for package @ohif/extension-dicom-html
+
+
+
+
+
+## [1.3.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.20...@ohif/extension-dicom-html@1.3.21) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/extension-dicom-html
+
+
+
+
+
+## [1.3.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.19...@ohif/extension-dicom-html@1.3.20) (2022-03-25)
+
+**Note:** Version bump only for package @ohif/extension-dicom-html
+
+
+
+
+
 ## [1.3.19](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.18...@ohif/extension-dicom-html@1.3.19) (2022-03-14)
 
 **Note:** Version bump only for package @ohif/extension-dicom-html

extensions/dicom-html/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-html",
-  "version": "1.3.19",
+  "version": "1.3.24",
   "description": "OHIF extension for rendering structured reports to HTML",
   "author": "OHIF",
   "license": "MIT",
@@ -29,7 +29,7 @@
   },
   "peerDependencies": {
     "@ohif/core": "^0.50.0",
-    "dcmjs": "0.19.7",
+    "dcmjs": "0.29.3",
     "prop-types": "^15.6.2",
     "react": "^16.8.6",
     "react-dom": "^16.8.6"

extensions/dicom-html/src/OHIFDicomHtmlSopClassHandler.js

@@ -1,4 +1,4 @@
-import { MODULE_TYPES, utils } from '@ohif/core';
+import { MODULE_TYPES, utils, metadata } from '@ohif/core';
 
 // TODO: Should probably use dcmjs for this
 const SOP_CLASS_UIDS = {
@@ -10,7 +10,7 @@ const SOP_CLASS_UIDS = {
   MAMMOGRAPHY_CAD_SR: '1.2.840.10008.5.1.4.1.1.88.50',
   CHEST_CAD_SR: '1.2.840.10008.5.1.4.1.1.88.65',
   X_RAY_RADIATION_DOSE_SR: '1.2.840.10008.5.1.4.1.1.88.67',
-  ACQUISITION_CONTEXT_SR_STORAGE: '1.2.840.10008.5.1.4.1.1.88.71'
+  ACQUISITION_CONTEXT_SR_STORAGE: '1.2.840.10008.5.1.4.1.1.88.71',
 };
 
 const sopClassUIDs = Object.values(SOP_CLASS_UIDS);
@@ -32,7 +32,7 @@ const OHIFDicomHtmlSopClassHandler = {
       SeriesTime,
     } = metadata;
 
-    return {
+    const srDisplaySet = {
       plugin: 'html',
       Modality: 'SR',
       displaySetInstanceUID: utils.guid(),
@@ -49,7 +49,15 @@ const OHIFDicomHtmlSopClassHandler = {
       authorizationHeaders,
       sopClassUids: sopClassUIDs,
       images: series._instances,
+      isDerived: true,
+      referencedDisplaySets: [],
     };
+
+    srDisplaySet.getSourceDisplaySet = function() {
+      return srDisplaySet.referencedDisplaySets;
+    };
+
+    return srDisplaySet;
   },
 };
 

extensions/dicom-rt/CHANGELOG.md

@@ -3,6 +3,46 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.7.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.13...@ohif/extension-dicom-rt@0.7.14) (2022-12-21)
+
+**Note:** Version bump only for package @ohif/extension-dicom-rt
+
+
+
+
+
+## [0.7.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.12...@ohif/extension-dicom-rt@0.7.13) (2022-09-01)
+
+**Note:** Version bump only for package @ohif/extension-dicom-rt
+
+
+
+
+
+## [0.7.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.11...@ohif/extension-dicom-rt@0.7.12) (2022-08-31)
+
+**Note:** Version bump only for package @ohif/extension-dicom-rt
+
+
+
+
+
+## [0.7.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.10...@ohif/extension-dicom-rt@0.7.11) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/extension-dicom-rt
+
+
+
+
+
+## [0.7.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.9...@ohif/extension-dicom-rt@0.7.10) (2022-03-25)
+
+**Note:** Version bump only for package @ohif/extension-dicom-rt
+
+
+
+
+
 ## [0.7.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.8...@ohif/extension-dicom-rt@0.7.9) (2022-03-14)
 
 **Note:** Version bump only for package @ohif/extension-dicom-rt

extensions/dicom-rt/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-rt",
-  "version": "0.7.9",
+  "version": "0.7.14",
   "description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
   "author": "OHIF",
   "license": "MIT",
@@ -31,7 +31,7 @@
     "@ohif/core": "^0.50.0",
     "cornerstone-core": "^2.6.1",
     "cornerstone-tools": "^6.0.6",
-    "dcmjs": "0.19.7",
+    "dcmjs": "0.29.3",
     "gl-matrix": "^3.3.0",
     "prop-types": "^15.6.2",
     "react": "^16.8.6",

extensions/dicom-rt/src/components/RTPanel/RTPanel.js

@@ -1,4 +1,4 @@
-import React, { useState, useEffect, useCallback } from 'react';
+import React, { useState, useEffect } from 'react';
 import PropTypes from 'prop-types';
 import cornerstoneTools from 'cornerstone-tools';
 import cornerstone from 'cornerstone-core';

extensions/dicom-segmentation/CHANGELOG.md

@@ -3,6 +3,108 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.7.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.20...@ohif/extension-dicom-segmentation@0.7.21) (2023-01-17)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
+## [0.7.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.19...@ohif/extension-dicom-segmentation@0.7.20) (2023-01-10)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
+## [0.7.19](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.18...@ohif/extension-dicom-segmentation@0.7.19) (2022-12-21)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
+## [0.7.18](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.17...@ohif/extension-dicom-segmentation@0.7.18) (2022-12-21)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
+## [0.7.17](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.16...@ohif/extension-dicom-segmentation@0.7.17) (2022-12-12)
+
+
+### Bug Fixes
+
+* [#2964](https://github.com/OHIF/Viewers/issues/2964) Reword message for segmentation error loading due to orientation tolerance ([#3017](https://github.com/OHIF/Viewers/issues/3017)) ([597ac11](https://github.com/OHIF/Viewers/commit/597ac11c4daee1b1e14148804551e20611cfef08))
+
+
+
+
+
+## [0.7.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.15...@ohif/extension-dicom-segmentation@0.7.16) (2022-10-28)
+
+
+### Bug Fixes
+
+* [#2964](https://github.com/OHIF/Viewers/issues/2964) Update message for segmentation error loading due to orientation tolerance ([#2982](https://github.com/OHIF/Viewers/issues/2982)) ([545161d](https://github.com/OHIF/Viewers/commit/545161d5e8d92bb6652f17dc24a36dac8aa7b3a4))
+
+
+
+
+
+## [0.7.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.14...@ohif/extension-dicom-segmentation@0.7.15) (2022-09-19)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
+## [0.7.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.13...@ohif/extension-dicom-segmentation@0.7.14) (2022-09-12)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
+## [0.7.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.12...@ohif/extension-dicom-segmentation@0.7.13) (2022-09-01)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
+## [0.7.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.11...@ohif/extension-dicom-segmentation@0.7.12) (2022-08-31)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
+## [0.7.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.10...@ohif/extension-dicom-segmentation@0.7.11) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
+## [0.7.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.9...@ohif/extension-dicom-segmentation@0.7.10) (2022-03-25)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
 ## [0.7.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.8...@ohif/extension-dicom-segmentation@0.7.9) (2022-03-14)
 
 **Note:** Version bump only for package @ohif/extension-dicom-segmentation

extensions/dicom-segmentation/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-segmentation",
-  "version": "0.7.9",
+  "version": "0.7.21",
   "description": "OHIF extension for viewing segmentations in the 2D MPR view",
   "author": "OHIF",
   "license": "MIT",
@@ -31,7 +31,7 @@
     "@ohif/core": "^0.50.0",
     "cornerstone-core": "^2.6.1",
     "cornerstone-tools": "^6.0.6",
-    "dcmjs": "0.19.7",
+    "dcmjs": "0.29.3",
     "prop-types": "^15.6.2",
     "react": "^16.8.6",
     "react-dom": "^16.8.6"

extensions/dicom-segmentation/src/commandsModule.js

@@ -0,0 +1,100 @@
+import csTools from 'cornerstone-tools';
+import cs from 'cornerstone-core';
+import OHIF from '@ohif/core';
+
+import DICOMSegTempCrosshairsTool from './tools/DICOMSegTempCrosshairsTool';
+import refreshViewports from './utils/refreshViewports';
+
+const { studyMetadataManager } = OHIF.utils;
+
+const commandsModule = ({ commandsManager }) => {
+  const actions = {
+    jumpToFirstSegment: ({ viewports }) => {
+      try {
+        const { activeViewportIndex, viewportSpecificData } = viewports;
+        const viewport = viewportSpecificData[activeViewportIndex];
+        const { StudyInstanceUID, displaySetInstanceUID } = viewport;
+        const studyMetadata = studyMetadataManager.get(StudyInstanceUID);
+        const firstImageId = studyMetadata.getFirstImageId(
+          displaySetInstanceUID
+        );
+
+        const module = csTools.getModule('segmentation');
+        const brushStackState = module.state.series[firstImageId];
+        const { labelmaps3D, activeLabelmapIndex } = brushStackState;
+        const { labelmaps2D } = labelmaps3D[activeLabelmapIndex];
+
+        const firstLabelMap2D = labelmaps2D.find(value => !!value);
+        const firstSegment = firstLabelMap2D.segmentsOnLabelmap[0];
+        const segmentNumber = firstSegment;
+
+        const validIndexList = [];
+        labelmaps2D.forEach((labelMap2D, index) => {
+          if (labelMap2D.segmentsOnLabelmap.includes(segmentNumber)) {
+            validIndexList.push(index);
+          }
+        });
+
+        const avg = array => array.reduce((a, b) => a + b) / array.length;
+        const average = avg(validIndexList);
+        const closest = validIndexList.reduce((prev, curr) => {
+          return Math.abs(curr - average) < Math.abs(prev - average)
+            ? curr
+            : prev;
+        });
+
+        const enabledElements = cs.getEnabledElements();
+        const element = enabledElements[activeViewportIndex].element;
+
+        const toolState = csTools.getToolState(element, 'stack');
+        if (!toolState) return;
+
+        const imageIds = toolState.data[0].imageIds;
+        const imageId = imageIds[closest];
+        const frameIndex = imageIds.indexOf(imageId);
+        const SOPInstanceUID = cs.metaData.get('SOPInstanceUID', imageId);
+
+        cs.getEnabledElements().forEach(enabledElement => {
+          cs.updateImage(enabledElement.element);
+        });
+
+        DICOMSegTempCrosshairsTool.addCrosshair(
+          element,
+          imageId,
+          segmentNumber
+        );
+
+        cs.getEnabledElements().forEach(enabledElement => {
+          cs.updateImage(enabledElement.element);
+        });
+
+        const refreshViewports = false;
+
+        commandsManager.runCommand('jumpToImage', {
+          StudyInstanceUID,
+          SOPInstanceUID,
+          frameIndex,
+          activeViewportIndex,
+          refreshViewports,
+        });
+      } catch (error) {
+        console.log('Error in moving to the first segment slice');
+      }
+    },
+  };
+
+  const definitions = {
+    jumpToFirstSegment: {
+      commandFn: actions.jumpToFirstSegment,
+      storeContexts: ['viewports'],
+      options: {},
+    },
+  };
+
+  return {
+    definitions,
+    defaultContext: 'VIEWER',
+  };
+};
+
+export default commandsModule;

extensions/dicom-segmentation/src/components/SegmentItem/SegmentItem.css

@@ -62,8 +62,8 @@
 }
 
 .dcmseg-segment-item .segment-label span {
-  overflow-wrap: normal;
+  overflow-wrap: break-word;
-  white-space: nowrap;
+  white-space: normal;
   overflow: hidden;
   max-width: calc(100% - 40px); /* calc(100% - 50px); 20px = eye icon */
   text-overflow: ellipsis;
@@ -71,6 +71,7 @@
 
 .dcmseg-segment-item .segment-label .eye-icon {
   cursor: pointer;
+  min-width: 20px;
   color: var(--active-color);
 }
 

extensions/dicom-segmentation/src/components/SegmentationPanel/SegmentationPanel.js

@@ -1,4 +1,4 @@
-import React, { useState, useEffect } from 'react';
+import React, { useState, useEffect, useCallback } from 'react';
 import PropTypes from 'prop-types';
 import cornerstoneTools from 'cornerstone-tools';
 import cornerstone from 'cornerstone-core';
@@ -36,6 +36,7 @@ const { studyMetadataManager } = utils;
  * @param {Function} props.onConfigurationChange - Configuration change handler
  * @param {Function} props.activeContexts - List of active application contexts
  * @param {Function} props.contexts - List of available application contexts
+ * @param {Function} props.servicesManager - Services manager
  * @returns component
  */
 const SegmentationPanel = ({
@@ -50,6 +51,7 @@ const SegmentationPanel = ({
   onSelectedSegmentationChange,
   activeContexts = [],
   contexts = {},
+  servicesManager,
 }) => {
   const isVTK = () => activeContexts.includes(contexts.VTK);
   const isCornerstone = () => activeContexts.includes(contexts.CORNERSTONE);
@@ -59,6 +61,9 @@ const SegmentationPanel = ({
    * store with context to make these kind of things less blurry.
    */
   const { configuration } = cornerstoneTools.getModule('segmentation');
+  if (configuration.segsTolerance === undefined) {
+    configuration.segsTolerance = 1e-2;
+  }
   const DEFAULT_BRUSH_RADIUS = configuration.radius || 10;
 
   /*
@@ -87,6 +92,25 @@ const SegmentationPanel = ({
     return studyMetadata.getFirstImageId(displaySetInstanceUID);
   };
 
+  const getAllSegDisplaySets = () => {
+    const { StudyInstanceUID } = getActiveViewport();
+    const studyMetadata = studyMetadataManager.get(StudyInstanceUID);
+    return studyMetadata.getDerivedDatasets({
+      Modality: 'SEG',
+    });
+  };
+
+  const updateSegDisplaySetsTolerance = tolerance => {
+    const segDisplaySets = getAllSegDisplaySets();
+    segDisplaySets.forEach(segDisplaySet => {
+      // update tol value
+      segDisplaySet.tolerance = tolerance;
+      // reset load flags for allowing retry for seg parsing.
+      segDisplaySet.isLoaded = false;
+      segDisplaySet.loadError = false;
+    });
+  };
+
   const getActiveLabelMaps3D = () => {
     const { labelmaps3D, activeLabelmapIndex } = getBrushStackState();
     return labelmaps3D[activeLabelmapIndex];
@@ -224,33 +248,15 @@ const SegmentationPanel = ({
         )
       );
     };
-  }, [
+  }, [activeIndex, viewports]);
-    activeIndex,
-    updateSegmentationComboBox,
-    viewports,
-  ]);
 
   const updateSegmentationComboBox = e => {
     const index = e.detail.activatedLabelmapIndex;
     if (index !== -1) {
       setState(state => ({ ...state, selectedSegmentation: index }));
-    } else {
-      cleanSegmentationComboBox();
     }
   };
 
-  const cleanSegmentationComboBox = () => {
-    setState(state => ({
-      ...state,
-      segmentsHidden: [],
-      segmentNumbers: [],
-      labelMapList: [],
-      segmentList: [],
-      isDisabled: true,
-      selectedSegmentation: -1,
-    }));
-  };
-
   const refreshSegmentations = () => {
     const activeViewport = getActiveViewport();
     const isDisabled = !activeViewport || !activeViewport.StudyInstanceUID;
@@ -616,32 +622,26 @@ const SegmentationPanel = ({
     configuration.outlineWidth = newConfiguration.outlineWidth;
     configuration.fillAlphaInactive = newConfiguration.fillAlphaInactive;
     configuration.outlineAlphaInactive = newConfiguration.outlineAlphaInactive;
+    configuration.segsTolerance = newConfiguration.segsTolerance;
     onConfigurationChange(newConfiguration);
+    updateSegDisplaySetsTolerance(configuration.segsTolerance);
     refreshViewports();
   };
 
   const onVisibilityChangeHandler = isVisible => {
     let segmentsHidden = [];
+    const labelmap3D = getActiveLabelMaps3D();
+
     state.segmentNumbers.forEach(segmentNumber => {
       if (isVTK()) {
         onSegmentVisibilityChange(segmentNumber, isVisible);
       }
 
-      /** Get all labelmaps with this segmentNumber (overlapping segments) */
-      const { labelmaps3D } = getBrushStackState();
-      const possibleLabelMaps3D = labelmaps3D.filter(({ labelmaps2D }) => {
-        return labelmaps2D.some(({ segmentsOnLabelmap }) =>
-          segmentsOnLabelmap.includes(segmentNumber)
-        );
-      });
-
-      possibleLabelMaps3D.forEach(labelmap3D => {
       labelmap3D.segmentsHidden[segmentNumber] = !isVisible;
       segmentsHidden = [
         ...new Set([...segmentsHidden, ...labelmap3D.segmentsHidden]),
       ];
     });
-    });
 
     setState(state => ({ ...state, segmentsHidden }));
 
@@ -665,6 +665,7 @@ const SegmentationPanel = ({
         configuration={configuration}
         onBack={() => setState(state => ({ ...state, showSettings: false }))}
         onChange={updateConfiguration}
+        servicesManager={servicesManager}
       />
     );
   } else {
@@ -709,7 +710,7 @@ const SegmentationPanel = ({
           count={state.segmentList.length}
           isVisible={
             state.segmentsHidden.filter(isHidden => isHidden === true).length <
-            state.segmentNumbers.length
+              state.segmentNumbers.length && state.segmentNumbers.length > 0
           }
           onVisibilityChange={onVisibilityChangeHandler}
         >

extensions/dicom-segmentation/src/components/SegmentationSettings/SegmentationSettings.js

@@ -4,7 +4,7 @@ import { Range } from '@ohif/ui';
 
 import './SegmentationSettings.css';
 
-const SegmentationSettings = ({ configuration, onBack, onChange, disabledFields = [] }) => {
+const SegmentationSettings = ({ configuration, onBack, onChange, servicesManager, disabledFields = [] }) => {
   const [state, setState] = useState({
     renderFill: configuration.renderFill,
     renderOutline: configuration.renderOutline,
@@ -13,7 +13,8 @@ const SegmentationSettings = ({ configuration, onBack, onChange, disabledFields
     outlineAlpha: configuration.outlineAlpha,
     outlineWidth: configuration.outlineWidth,
     fillAlphaInactive: configuration.fillAlphaInactive,
-    outlineAlphaInactive: configuration.outlineAlphaInactive
+    outlineAlphaInactive: configuration.outlineAlphaInactive,
+    segsTolerance: configuration.segsTolerance,
   });
 
   useEffect(() => {
@@ -28,6 +29,32 @@ const SegmentationSettings = ({ configuration, onBack, onChange, disabledFields
     setState(state => ({ ...state, [field]: value }));
   };
 
+  const once = fn => (...args) => {
+    if (!fn) return;
+    fn(...args);
+    fn = null;
+  };
+
+  const segTolValue = document.getElementById('segToleranceValue');
+  if (segTolValue) {
+    segTolValue.onchange = once(function() {
+      const { UINotificationService, LoggerService } = servicesManager.services;
+
+      const error = new Error(
+        'Segmentation loader tolerance changed.\
+        This operation can potentially generate errors in the Segmentation parsing.'
+      );
+
+      LoggerService.error({ error, message: error.message });
+      UINotificationService.show({
+        title: 'Segmentation panel',
+        message: error.message,
+        type: 'warning',
+        autoClose: true,
+      });
+  });
+}
+
   const toFloat = value => parseFloat(value / 100).toFixed(2);
 
   return (
@@ -133,6 +160,31 @@ const SegmentationSettings = ({ configuration, onBack, onChange, disabledFields
           )}
         </div>
       )}
+      <div className="settings-group" style={{ marginBottom: 15 }}>
+        <label style={{ margin: '0 15px' }}>
+          Tolerance:
+          <input
+            id="segToleranceValue"
+            style={{ margin: '0 15px' }}
+            label="Tolerance"
+            onKeyPress={event => {
+                const validate = string => {
+                  let rgx = /[^-.e0-9]+/g;
+                  return string.match(rgx);
+                };
+
+                if (validate(event.key)) {
+                  event.preventDefault();
+                }
+              }
+            }
+            onChange={event => {
+              save('segsTolerance', event.target.value);
+            }}
+            value={state.segsTolerance}
+          />
+        </label>
+      </div>
     </div>
   );
 };
@@ -169,11 +221,12 @@ SegmentationSettings.propTypes = {
     renderFill: PropTypes.bool.isRequired,
     renderOutline: PropTypes.bool.isRequired,
     shouldRenderInactiveLabelmaps: PropTypes.bool.isRequired,
-    fillAlpha: PropTypes.oneOfType([PropTypes.string, PropTypes.number]).isRequired, /* TODO: why fillAlpha is string? */
+    fillAlpha: PropTypes.oneOfType([PropTypes.string, PropTypes.number]).isRequired,
-    outlineAlpha: PropTypes.oneOfType([PropTypes.string, PropTypes.number]).isRequired, /* TODO: why fillAlpha is string? */
+    outlineAlpha: PropTypes.oneOfType([PropTypes.string, PropTypes.number]).isRequired,
     outlineWidth: PropTypes.number.isRequired,
-    fillAlphaInactive: PropTypes.number.isRequired,
+    fillAlphaInactive: PropTypes.oneOfType([PropTypes.string, PropTypes.number]).isRequired,
-    outlineAlphaInactive: PropTypes.number.isRequired,
+    outlineAlphaInactive: PropTypes.oneOfType([PropTypes.string, PropTypes.number]).isRequired,
+    segsTolerance: PropTypes.oneOfType([PropTypes.string, PropTypes.number]).isRequired,
   }).isRequired,
   onBack: PropTypes.func.isRequired,
   onChange: PropTypes.func.isRequired,

extensions/dicom-segmentation/src/getOHIFDicomSegSopClassHandler.js

@@ -62,6 +62,7 @@ export default function getSopClassHandlerModule({ servicesManager }) {
         SeriesNumber,
         SeriesDescription,
         metadata,
+        tolerance: 1e-2,
       };
 
       segDisplaySet.getSourceDisplaySet = function(
@@ -93,7 +94,7 @@ export default function getSopClassHandlerModule({ servicesManager }) {
           referencedDisplaySet.SeriesInstanceUID
         );
 
-        const results = await _parseSeg(segArrayBuffer, imageIds);
+        const results = await _parseSeg(segArrayBuffer, imageIds, segDisplaySet.tolerance);
         if (results === undefined) {
           return;
         }
@@ -149,10 +150,13 @@ export default function getSopClassHandlerModule({ servicesManager }) {
   };
 }
 
-function _parseSeg(arrayBuffer, imageIds) {
+function _parseSeg(
-  const skipOverlapping = false;
+  arrayBuffer,
-  const tolerance = 1e-2;
+  imageIds,
-  const cornerstoneToolsVersion = 4;
+  tolerance = 1e-2,
+  skipOverlapping = false,
+  cornerstoneToolsVersion = 4
+) {
   return dcmjs.adapters.Cornerstone.Segmentation.generateToolState(
     imageIds,
     arrayBuffer,

extensions/dicom-segmentation/src/index.js

@@ -6,6 +6,7 @@ import toolbarModule from './toolbarModule.js';
 import getSopClassHandlerModule from './getOHIFDicomSegSopClassHandler.js';
 import SegmentationPanel from './components/SegmentationPanel/SegmentationPanel.js';
 import { version } from '../package.json';
+import commandsModule from './commandsModule.js';
 const { studyMetadataManager } = OHIF.utils;
 
 export default {
@@ -32,12 +33,18 @@ export default {
 
     const ExtendedSegmentationPanel = props => {
       const { activeContexts } = api.hooks.useAppContext();
-
       const onDisplaySetLoadFailureHandler = error => {
-        LoggerService.error({ error, message: error.message });
+        const message =
+          error.message.includes('orthogonal') ||
+          error.message.includes('oblique')
+            ? 'The segmentation has been detected as non coplanar,\
+              If you really think it is coplanar,\
+              please adjust the tolerance in the segmentation panel settings (at your own peril!)'
+            : error.message;
+        LoggerService.error({ error, message });
         UINotificationService.show({
           title: 'DICOM Segmentation Loader',
-          message: error.message,
+          message,
           type: 'error',
           autoClose: false,
         });
@@ -78,6 +85,7 @@ export default {
           onConfigurationChange={onConfigurationChangeHandler}
           onSelectedSegmentationChange={onSelectedSegmentationChangeHandler}
           onDisplaySetLoadFailure={onDisplaySetLoadFailureHandler}
+          servicesManager={servicesManager}
         />
       );
     };
@@ -114,6 +122,15 @@ export default {
       });
     };
 
+    const onSegmentationsCompletelyLoaded = () => {
+      commandsManager.runCommand('jumpToFirstSegment');
+    };
+
+    document.addEventListener(
+      'segseriesselected',
+      onSegmentationsCompletelyLoaded
+    );
+
     document.addEventListener(
       'extensiondicomsegmentationsegloaded',
       onSegmentationsLoaded
@@ -175,5 +192,8 @@ export default {
       defaultContext: ['VIEWER'],
     };
   },
+  getCommandsModule({ commandsManager, servicesManager }) {
+    return commandsModule({ commandsManager, servicesManager });
+  },
   getSopClassHandlerModule,
 };

extensions/dicom-segmentation/src/utils/setActiveLabelMap.js

@@ -47,14 +47,23 @@ export default async function setActiveLabelmap(
     return labelmapIndex;
   }
 
-  if (!displaySet.isLoaded) {
+  if (!displaySet.isLoaded && !displaySet.loadError) {
     try {
       await displaySet.load(referencedDisplaySet, studies);
     } catch (error) {
       displaySet.isLoaded = false;
       displaySet.loadError = true;
+      displaySet.segLoadErrorMessagge = error.message;
       onDisplaySetLoadFailure(error);
 
+      /*
+       * TODO: Improve the way we notify parts of the app
+       * that depends on derived display sets to be loaded.
+       * (Implement pubsub for better tracking of derived display sets)
+       */
+      const event = new CustomEvent('segmentationLoadingError');
+      document.dispatchEvent(event);
+
       return -1;
     }
   }

extensions/dicom-tag-browser/CHANGELOG.md

@@ -3,6 +3,54 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.2.26](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.25...@ohif/extension-dicom-tag-browser@0.2.26) (2023-03-19)
+
+**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
+
+
+
+
+
+## [0.2.25](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.24...@ohif/extension-dicom-tag-browser@0.2.25) (2022-12-21)
+
+**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
+
+
+
+
+
+## [0.2.24](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.23...@ohif/extension-dicom-tag-browser@0.2.24) (2022-09-01)
+
+**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
+
+
+
+
+
+## [0.2.23](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.22...@ohif/extension-dicom-tag-browser@0.2.23) (2022-04-06)
+
+**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
+
+
+
+
+
+## [0.2.22](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.21...@ohif/extension-dicom-tag-browser@0.2.22) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
+
+
+
+
+
+## [0.2.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.20...@ohif/extension-dicom-tag-browser@0.2.21) (2022-03-25)
+
+**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
+
+
+
+
+
 ## [0.2.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.19...@ohif/extension-dicom-tag-browser@0.2.20) (2022-03-14)
 
 **Note:** Version bump only for package @ohif/extension-dicom-tag-browser

extensions/dicom-tag-browser/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-tag-browser",
-  "version": "0.2.20",
+  "version": "0.2.26",
   "description": "OHIF extension for checking DICOM headers.",
   "author": "OHIF",
   "license": "MIT",
@@ -28,13 +28,13 @@
   },
   "peerDependencies": {
     "@ohif/core": "^2.6.0",
-    "dcmjs": "0.19.7",
+    "dcmjs": "0.29.3",
     "react": "^16.8.6"
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",
     "dicomweb-client": "^0.8.3",
-    "moment": "2.24.0",
+    "moment": "2.29.4",
     "react-select": "^3.0.8"
   }
 }

extensions/dicom-tag-browser/src/components/DicomTagBrowser.js

@@ -59,7 +59,7 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
     let metadata;
     const isImageStack =
       activeDisplaySet instanceof ImageSet &&
-      activeDisplaySet.isModalitySupported === true;
+      activeDisplaySet.isSOPClassUIDSupported === true;
 
     let instanceList;
 

extensions/lesion-tracker/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-lesion-tracker@0.2.1...@ohif/extension-lesion-tracker@0.2.2) (2022-06-29)
+
+**Note:** Version bump only for package @ohif/extension-lesion-tracker
+
+
+
+
+
 ## [0.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-lesion-tracker@0.2.0...@ohif/extension-lesion-tracker@0.2.1) (2020-09-03)
 
 **Note:** Version bump only for package @ohif/extension-lesion-tracker

extensions/lesion-tracker/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-lesion-tracker",
-  "version": "0.2.1",
+  "version": "0.2.2",
   "description": "OHIF extension for Lesion Tracker",
   "author": "OHIF",
   "license": "MIT",

extensions/lesion-tracker/src/components/MeasurementComparisonTable.js

@@ -76,13 +76,13 @@ const additionalFindings = [
 
 const currentCollections = [
   {
-    selectorAction: () => { },
+    selectorAction: () => {},
     maxMeasurements: 3,
     groupName: 'Measurements',
     measurements: measurements,
   },
   {
-    selectorAction: () => { },
+    selectorAction: () => {},
     groupName: 'Additional Findings',
     measurements: additionalFindings,
   },
@@ -90,13 +90,13 @@ const currentCollections = [
 
 const comparisonColletions = [
   {
-    selectorAction: () => { },
+    selectorAction: () => {},
     maxMeasurements: 3,
     groupName: 'Measurements',
     measurements: measurements,
   },
   {
-    selectorAction: () => { },
+    selectorAction: () => {},
     groupName: 'Additional Findings',
     measurements: additionalFindings,
   },
@@ -128,7 +128,7 @@ const comparisonTimepoints = [
   {
     key: 'Comparison',
     date: '15-Jun-18',
-  }
+  },
 ];
 
 const MeasurementComparisonTable = () => {
@@ -138,8 +138,8 @@ const MeasurementComparisonTable = () => {
         timepoints={comparisonTimepoints}
         overallWarnings={overallWarnings}
         measurementCollection={comparisonCollections}
-        onRelabelClick={() => { }}
+        onRelabelClick={() => {}}
-        onEditDescriptionClick={() => { }}
+        onEditDescriptionClick={() => {}}
       />
       <div className="generate-report">
         <button className="btn btn-primary">Generate Report</button>

extensions/vtk/CHANGELOG.md

@@ -3,6 +3,190 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.12.42](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.41...@ohif/extension-vtk@1.12.42) (2023-03-19)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.41](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.40...@ohif/extension-vtk@1.12.41) (2022-12-21)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.40](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.39...@ohif/extension-vtk@1.12.40) (2022-12-12)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.39](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.38...@ohif/extension-vtk@1.12.39) (2022-11-12)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.38](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.37...@ohif/extension-vtk@1.12.38) (2022-11-02)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.37](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.36...@ohif/extension-vtk@1.12.37) (2022-10-28)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.36](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.35...@ohif/extension-vtk@1.12.36) (2022-10-25)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.35](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.34...@ohif/extension-vtk@1.12.35) (2022-09-26)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.34](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.33...@ohif/extension-vtk@1.12.34) (2022-09-20)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.33](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.32...@ohif/extension-vtk@1.12.33) (2022-09-19)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.32](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.31...@ohif/extension-vtk@1.12.32) (2022-09-12)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.31](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.30...@ohif/extension-vtk@1.12.31) (2022-09-02)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.30](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.29...@ohif/extension-vtk@1.12.30) (2022-09-01)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.29](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.28...@ohif/extension-vtk@1.12.29) (2022-08-31)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.28](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.27...@ohif/extension-vtk@1.12.28) (2022-08-24)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.27](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.26...@ohif/extension-vtk@1.12.27) (2022-06-30)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.26](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.25...@ohif/extension-vtk@1.12.26) (2022-06-29)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.25](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.24...@ohif/extension-vtk@1.12.25) (2022-06-28)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.24](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.23...@ohif/extension-vtk@1.12.24) (2022-06-14)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.23](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.22...@ohif/extension-vtk@1.12.23) (2022-04-22)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.22](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.21...@ohif/extension-vtk@1.12.22) (2022-04-06)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.20...@ohif/extension-vtk@1.12.21) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.19...@ohif/extension-vtk@1.12.20) (2022-03-25)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
 ## [1.12.19](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.18...@ohif/extension-vtk@1.12.19) (2022-03-14)
 
 **Note:** Version bump only for package @ohif/extension-vtk

extensions/vtk/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-vtk",
-  "version": "1.12.19",
+  "version": "1.12.42",
   "description": "OHIF extension for VTK.js",
   "author": "OHIF",
   "license": "MIT",
@@ -34,8 +34,8 @@
     "@ohif/ui": "^0.50.0",
     "cornerstone-core": "^2.6.1",
     "cornerstone-tools": "^6.0.6",
-    "cornerstone-wado-image-loader": "^4.1.0",
+    "cornerstone-wado-image-loader": "^4.2.1",
-    "dcmjs": "0.19.7",
+    "dcmjs": "0.29.3",
     "dicom-parser": "^1.8.11",
     "i18next": "^17.0.3",
     "i18next-browser-languagedetector": "^3.0.1",
@@ -50,13 +50,13 @@
   "dependencies": {
     "@babel/runtime": "^7.5.5",
     "lodash.throttle": "^4.1.1",
-    "react-vtkjs-viewport": "^0.14.4"
+    "react-vtkjs-viewport": "^0.14.5"
   },
   "devDependencies": {
-    "@ohif/core": "^2.16.14",
+    "@ohif/core": "^2.16.35",
-    "@ohif/ui": "^1.10.7",
+    "@ohif/ui": "^1.10.11",
     "cornerstone-tools": "^6.0.6",
-    "cornerstone-wado-image-loader": "^4.1.0",
+    "cornerstone-wado-image-loader": "^4.2.1",
     "dicom-parser": "^1.8.11",
     "gh-pages": "^2.0.1",
     "i18next": "^17.0.3",

package.json

@@ -99,6 +99,7 @@
     "shader-loader": "^1.3.1",
     "start-server-and-test": "^1.10.0",
     "style-loader": "^1.0.0",
+    "styled-components": "^5.3.5",
     "stylelint": "^10.1.0",
     "stylelint-config-recommended": "^2.2.0",
     "stylus": "^0.54.5",
@@ -124,6 +125,14 @@
     ]
   },
   "resolutions": {
+    "handlebars": "4.7.7",
+    "json-schema": "0.4.0",
+    "ejs": "3.1.7",
+    "thenify": "3.3.1",
+    "parse-url": "8.1.0",
+    "loader-utils": "1.4.1",
+    "flat": "5.0.1",
+    "minimist": "1.2.8",
     "**/node-gyp": "8.4.1",
     "**/@babel/runtime": "7.5.5"
   }

platform/core/CHANGELOG.md

@@ -3,6 +3,189 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [2.16.35](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.34...@ohif/core@2.16.35) (2022-12-21)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.34](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.33...@ohif/core@2.16.34) (2022-12-12)
+
+
+### Bug Fixes
+
+* [#2964](https://github.com/OHIF/Viewers/issues/2964) Reword message for segmentation error loading due to orientation tolerance ([#3017](https://github.com/OHIF/Viewers/issues/3017)) ([597ac11](https://github.com/OHIF/Viewers/commit/597ac11c4daee1b1e14148804551e20611cfef08))
+
+
+
+
+
+## [2.16.33](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.32...@ohif/core@2.16.33) (2022-11-12)
+
+
+### Bug Fixes
+
+* handle missing ReferencedInstanceSequence attribute ([#2786](https://github.com/OHIF/Viewers/issues/2786)) ([4473807](https://github.com/OHIF/Viewers/commit/44738078dbd8dc6b27d2d669e25417e37371f48d))
+
+
+
+
+
+## [2.16.32](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.31...@ohif/core@2.16.32) (2022-11-02)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.31](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.30...@ohif/core@2.16.31) (2022-10-28)
+
+
+### Bug Fixes
+
+* [#2964](https://github.com/OHIF/Viewers/issues/2964) Update message for segmentation error loading due to orientation tolerance ([#2982](https://github.com/OHIF/Viewers/issues/2982)) ([545161d](https://github.com/OHIF/Viewers/commit/545161d5e8d92bb6652f17dc24a36dac8aa7b3a4))
+
+
+
+
+
+## [2.16.30](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.29...@ohif/core@2.16.30) (2022-10-25)
+
+
+### Bug Fixes
+
+* 2965 Correct Parsing Logic for Qualitative Instance Level SR ([#2972](https://github.com/OHIF/Viewers/issues/2972)) ([f7db74a](https://github.com/OHIF/Viewers/commit/f7db74a84376598065b6fa2c00cd5735415ff651))
+
+
+
+
+
+## [2.16.29](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.28...@ohif/core@2.16.29) (2022-09-20)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.28](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.27...@ohif/core@2.16.28) (2022-09-19)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.27](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.26...@ohif/core@2.16.27) (2022-09-12)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.26](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.25...@ohif/core@2.16.26) (2022-09-02)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.25](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.24...@ohif/core@2.16.25) (2022-09-01)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.24](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.23...@ohif/core@2.16.24) (2022-08-31)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.23](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.22...@ohif/core@2.16.23) (2022-08-24)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.22](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.21...@ohif/core@2.16.22) (2022-06-30)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.21](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.20...@ohif/core@2.16.21) (2022-06-29)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.20](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.19...@ohif/core@2.16.20) (2022-06-28)
+
+
+### Bug Fixes
+
+* Re IDC2797, fix double parsing of SR qualitative annotations ([#2830](https://github.com/OHIF/Viewers/issues/2830)) ([9f813e0](https://github.com/OHIF/Viewers/commit/9f813e0ea08f0aada8efab9ef6228ad90dd1758d))
+
+
+
+
+
+## [2.16.19](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.18...@ohif/core@2.16.19) (2022-06-14)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.18](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.17...@ohif/core@2.16.18) (2022-04-22)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.17](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.16...@ohif/core@2.16.17) (2022-04-06)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.16](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.15...@ohif/core@2.16.16) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.15](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.14...@ohif/core@2.16.15) (2022-03-25)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
 ## [2.16.14](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.13...@ohif/core@2.16.14) (2022-03-14)
 
 **Note:** Version bump only for package @ohif/core

platform/core/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/core",
-  "version": "2.16.14",
+  "version": "2.16.35",
   "description": "Generic business logic for web-based medical imaging applications",
   "author": "OHIF Core Team",
   "license": "MIT",
@@ -33,13 +33,13 @@
   "peerDependencies": {
     "cornerstone-core": "^2.6.1",
     "cornerstone-tools": "^6.0.6",
-    "cornerstone-wado-image-loader": "^4.1.0",
+    "cornerstone-wado-image-loader": "^4.2.1",
     "dicom-parser": "^1.8.11"
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",
     "ajv": "^6.10.0",
-    "dcmjs": "0.19.7",
+    "dcmjs": "0.29.3",
     "dicomweb-client": "^0.8.3",
     "immer": "9.0.12",
     "isomorphic-base64": "^1.0.2",

platform/core/src/DICOMSR/SCOORD3D/constants/scoordTypes.js

@@ -1,4 +1,5 @@
 export default {
+  TEXT: 'TEXT',
   POINT: 'POINT',
   MULTIPOINT: 'MULTIPOINT',
   POLYLINE: 'POLYLINE',

platform/core/src/DICOMSR/SCOORD3D/parseSCOORD3D.js

@@ -1,6 +1,5 @@
 import { ImageSet } from '../../classes';
 import getMeasurements from './utils/getMeasurements';
-import getReferencedImagesList from './utils/getReferencedImagesList';
 import isRehydratable from './utils/isRehydratable';
 import addMeasurement from './utils/addMeasurement';
 
@@ -8,6 +7,16 @@ const parseSCOORD3D = ({ servicesManager, displaySets }) => {
   const { MeasurementService } = servicesManager.services;
 
   const srDisplaySets = displaySets.filter(ds => ds.Modality === 'SR');
+  const imageDisplaySets = displaySets.filter(
+    ds =>
+      ds.Modality !== 'SR' &&
+      ds.Modality !== 'SEG' &&
+      ds.Modality !== 'RTSTRUCT'
+  );
+
+  imageDisplaySets.forEach(imageDisplaySet => {
+    imageDisplaySet.SRLabels = [];
+  });
 
   srDisplaySets.forEach(srDisplaySet => {
     const firstInstance = srDisplaySet.metadata;
@@ -17,8 +26,7 @@ const parseSCOORD3D = ({ servicesManager, displaySets }) => {
 
     const { ContentSequence } = firstInstance;
 
-    srDisplaySet.referencedImages = getReferencedImagesList(ContentSequence);
+    srDisplaySet.measurements = getMeasurements(ContentSequence);
-    srDisplaySet.measurements = getMeasurements(ContentSequence, srDisplaySet);
     const mappings = MeasurementService.getSourceMappings(
       'CornerstoneTools',
       '4'
@@ -28,13 +36,6 @@ const parseSCOORD3D = ({ servicesManager, displaySets }) => {
     srDisplaySet.isRehydratable = isRehydratable(srDisplaySet, mappings);
     srDisplaySet.isLoaded = true;
 
-    const imageDisplaySets = displaySets.filter(
-      ds =>
-        ds.Modality !== 'SR' &&
-        ds.Modality !== 'SEG' &&
-        ds.Modality !== 'RTSTRUCT' &&
-        ds.Modality !== 'RTDOSE'
-    );
     imageDisplaySets.forEach(imageDisplaySet => {
       // Check currently added displaySets and add measurements if the sources exist.
       checkIfCanAddMeasurementsToDisplaySet(srDisplaySet, imageDisplaySet);
@@ -127,10 +128,10 @@ const checkIfCanAddMeasurementsToDisplaySet = (
 
   const imageIds = images.map(i => i.getImageId());
   const SOPInstanceUIDs = images.map(i => i.SOPInstanceUID);
+  const colors = new Map();
   measurements.forEach(measurement => {
     const { coords } = measurement;
-
+    coords.forEach((coord, index) => {
-    coords.forEach(coord => {
       if (coord.ReferencedSOPSequence !== undefined) {
         const imageIndex = SOPInstanceUIDs.findIndex(
           SOPInstanceUID =>
@@ -138,8 +139,43 @@ const checkIfCanAddMeasurementsToDisplaySet = (
             coord.ReferencedSOPSequence.ReferencedSOPInstanceUID
         );
         if (imageIndex > -1) {
+          if (!srDisplaySet.referencedDisplaySets.includes(imageDisplaySet)) {
+            srDisplaySet.referencedDisplaySets.push(imageDisplaySet);
+          }
+
           const imageId = imageIds[imageIndex];
           const imageMetadata = images[imageIndex].getData().metadata;
+
+          if (coord.GraphicType === 'TEXT') {
+            const key =
+              measurement.labels[index].label + measurement.labels[index].value;
+            let color = colors.get(key);
+            if (!color) {
+              // random dark color
+              color =
+                'hsla(' + Math.floor(Math.random() * 360) + ', 70%, 30%, 1)';
+              colors.set(key, color);
+            }
+
+            measurement.labels[index].color = color;
+            measurement.isSRText = true;
+            measurement.labels[index].visible = true;
+
+            imageDisplaySet.SRLabels.push({
+              ReferencedSOPInstanceUID:
+                coord.ReferencedSOPSequence.ReferencedSOPInstanceUID,
+              labels: measurement.labels[index],
+            });
+
+            if (index === 0) {
+              addMeasurement(
+                measurement,
+                imageId,
+                imageMetadata,
+                imageDisplaySet.displaySetInstanceUID
+              );
+            }
+          } else {
             addMeasurement(
               measurement,
               imageId,
@@ -148,6 +184,7 @@ const checkIfCanAddMeasurementsToDisplaySet = (
             );
           }
         }
+      }
     });
   });
 };

platform/core/src/DICOMSR/SCOORD3D/utils/addMeasurement.js

@@ -26,8 +26,10 @@ export default function addMeasurement(
 
   const measurementData = {
     TrackingUniqueIdentifier: measurement.TrackingUniqueIdentifier,
+    TrackingIdentifier: measurement.TrackingIdentifier,
     renderableData: {},
     labels: measurement.labels,
+    isSRText: measurement.isSRText,
   };
 
   measurement.coords.forEach(coord => {

platform/core/src/DICOMSR/SCOORD3D/utils/getCoordsFromSCOORDOrSCOORD3D.js

@@ -1,22 +1,14 @@
-const getCoordsFromSCOORDOrSCOORD3D = (graphicItem, displaySet) => {
+const getCoordsFromSCOORDOrSCOORD3D = graphicItem => {
-  const { ValueType, RelationshipType, GraphicType, GraphicData } = graphicItem;
+  const { ValueType, GraphicType, GraphicData } = graphicItem;
-
-  // if (RelationshipType !== RELATIONSHIP_TYPE.INFERRED_FROM) {
-  //   console.warn(
-  //     `Relationshiptype === ${RelationshipType}. Cannot deal with NON TID-1400 SCOORD group with RelationshipType !== "INFERRED FROM."`
-  //   );
-  //   return;
-  // }
-
   const coords = { ValueType, GraphicType, GraphicData };
 
-  // ContentSequence has length of 1 as RelationshipType === 'INFERRED FROM'
   if (ValueType === 'SCOORD') {
     const { ReferencedSOPSequence } = graphicItem.ContentSequence;
     coords.ReferencedSOPSequence = ReferencedSOPSequence;
   } else if (ValueType === 'SCOORD3D') {
     if (graphicItem.ReferencedFrameOfReferenceUID) {
-      coords.ReferencedFrameOfReferenceSequence = graphicItem.ReferencedFrameOfReferenceUID;
+      coords.ReferencedFrameOfReferenceSequence =
+        graphicItem.ReferencedFrameOfReferenceUID;
     } else if (graphicItem.ContentSequence) {
       const {
         ReferencedFrameOfReferenceSequence,

platform/core/src/DICOMSR/SCOORD3D/utils/getMeasurements.js

@@ -3,10 +3,7 @@ import getSequenceAsArray from './getSequenceAsArray';
 import getMergedContentSequencesByTrackingUniqueIdentifiers from './getMergedContentSequencesByTrackingUniqueIdentifiers';
 import processMeasurement from './processMeasurement';
 
-const getMeasurements = (
+const getMeasurements = ImagingMeasurementReportContentSequence => {
-  ImagingMeasurementReportContentSequence,
-  displaySet
-) => {
   const ImagingMeasurements = ImagingMeasurementReportContentSequence.find(
     item =>
       item.ConceptNameCodeSequence.CodeValue ===
@@ -21,25 +18,19 @@ const getMeasurements = (
       CodeNameCodeSequenceValues.MeasurementGroup
   );
 
-  const mergedContentSequencesByTrackingUniqueIdentifiers = getMergedContentSequencesByTrackingUniqueIdentifiers(
+  /* const mergedContentSequencesByTrackingUniqueIdentifiers = getMergedContentSequencesByTrackingUniqueIdentifiers(
     MeasurementGroups
-  );
+  );*/
 
   let measurements = [];
 
-  Object.keys(mergedContentSequencesByTrackingUniqueIdentifiers).forEach(
+  MeasurementGroups.forEach(MeasurementGroup => {
-    trackingUniqueIdentifier => {
+    const contentSequence = MeasurementGroup.ContentSequence;
-      const mergedContentSequence =
+    const measurement = processMeasurement(contentSequence);
-        mergedContentSequencesByTrackingUniqueIdentifiers[
-          trackingUniqueIdentifier
-        ];
-
-      const measurement = processMeasurement(mergedContentSequence, displaySet);
     if (measurement) {
       measurements.push(measurement);
     }
-    }
+  });
-  );
 
   return measurements;
 };

platform/core/src/DICOMSR/SCOORD3D/utils/getReferencedImagesList.js

@@ -1,43 +0,0 @@
-import getSequenceAsArray from './getSequenceAsArray';
-import { CodeNameCodeSequenceValues } from '../enums';
-
-const getReferencedImagesList = ImagingMeasurementReportContentSequence => {
-  const referencedImages = [];
-
-  const ImageLibrary = ImagingMeasurementReportContentSequence.find(
-    item =>
-      item.ConceptNameCodeSequence.CodeValue ===
-      CodeNameCodeSequenceValues.ImageLibrary
-  );
-
-  if (!ImageLibrary.ContentSequence) {
-    return referencedImages;
-  }
-
-  const ImageLibraryGroup = getSequenceAsArray(
-    ImageLibrary.ContentSequence
-  ).find(
-    item =>
-      item.ConceptNameCodeSequence.CodeValue ===
-      CodeNameCodeSequenceValues.ImageLibraryGroup
-  );
-
-  getSequenceAsArray(ImageLibraryGroup.ContentSequence).forEach(item => {
-    const { ReferencedSOPSequence } = item;
-    if (ReferencedSOPSequence) {
-      const {
-        ReferencedSOPClassUID,
-        ReferencedSOPInstanceUID,
-      } = ReferencedSOPSequence;
-
-      referencedImages.push({
-        ReferencedSOPClassUID,
-        ReferencedSOPInstanceUID,
-      });
-    }
-  });
-
-  return referencedImages;
-};
-
-export default getReferencedImagesList;

platform/core/src/DICOMSR/SCOORD3D/utils/getRenderableData.js

@@ -57,6 +57,10 @@ const getRenderableData = (
 
   // https://dicom.innolitics.com/ciods/procedure-log/sr-document-content/00700023
   switch (GraphicType) {
+    case SCOORD_TYPES.TEXT:
+      renderableData = [{ x: GraphicData[0], y: GraphicData[1] }];
+
+      break;
     case SCOORD_TYPES.POINT:
       renderableData = [];
 

platform/core/src/DICOMSR/SCOORD3D/utils/processMeasurement.js

@@ -1,16 +1,16 @@
 import processTID1410Measurement from './processTID1410Measurement';
 import processNonGeometricallyDefinedMeasurement from './processNonGeometricallyDefinedMeasurement';
 
-const processMeasurement = (mergedContentSequence, displaySet) => {
+const processMeasurement = contentSequence => {
   if (
-    mergedContentSequence.some(
+    contentSequence.some(
       group => group.ValueType === 'SCOORD' || group.ValueType === 'SCOORD3D'
     )
   ) {
-    return processTID1410Measurement(mergedContentSequence, displaySet);
+    return processTID1410Measurement(contentSequence);
   }
 
-  return processNonGeometricallyDefinedMeasurement(mergedContentSequence);
+  return processNonGeometricallyDefinedMeasurement(contentSequence);
 };
 
 export default processMeasurement;

platform/core/src/DICOMSR/SCOORD3D/utils/processNonGeometricallyDefinedMeasurement.js

@@ -1,31 +1,40 @@
 import getLabelFromMeasuredValueSequence from './getLabelFromMeasuredValueSequence';
 import getCoordsFromSCOORDOrSCOORD3D from './getCoordsFromSCOORDOrSCOORD3D';
 import { CodeNameCodeSequenceValues, CodingSchemeDesignators } from '../enums';
+import SCOORD_TYPES from '../constants/scoordTypes';
 
 const CORNERSTONE_FREETEXT_CODE_VALUE = 'CORNERSTONEFREETEXT';
 
-const processNonGeometricallyDefinedMeasurement = mergedContentSequence => {
+const processNonGeometricallyDefinedMeasurement = contentSequence => {
-  const NUMContentItems = mergedContentSequence.filter(
+  const NUMContentItems = contentSequence.filter(
     group => group.ValueType === 'NUM'
   );
 
-  const UIDREFContentItem = mergedContentSequence.find(
+  const CODEContentItems = contentSequence.filter(
+    group => group.ValueType === 'CODE'
+  );
+
+  const UIDREFContentItem = contentSequence.find(
     group => group.ValueType === 'UIDREF'
   );
 
-  const TrackingIdentifierContentItem = mergedContentSequence.find(
+  const IMAGEContentItem = contentSequence.find(
+    group => group.ValueType === 'IMAGE'
+  );
+
+  const TrackingIdentifierContentItem = contentSequence.find(
     item =>
       item.ConceptNameCodeSequence.CodeValue ===
       CodeNameCodeSequenceValues.TrackingIdentifier
   );
 
-  const Finding = mergedContentSequence.find(
+  const Finding = contentSequence.find(
     item =>
       item.ConceptNameCodeSequence.CodeValue ===
       CodeNameCodeSequenceValues.Finding
   );
 
-  const FindingSites = mergedContentSequence.filter(
+  const FindingSites = contentSequence.filter(
     item =>
       item.ConceptNameCodeSequence.CodingSchemeDesignator ===
         CodingSchemeDesignators.SRT &&
@@ -111,6 +120,37 @@ const processNonGeometricallyDefinedMeasurement = mergedContentSequence => {
     }
   });
 
+  if (NUMContentItems.length === 0 && IMAGEContentItem) {
+    CODEContentItems.forEach(item => {
+      const { ConceptCodeSequence, ConceptNameCodeSequence } = item;
+
+      if (!ConceptCodeSequence || !ConceptNameCodeSequence) {
+        console.warn(`Graphic missing, skipping annotation.`);
+
+        return;
+      }
+
+      const GraphicData = [0, 0];
+      const GraphicType = SCOORD_TYPES.TEXT;
+      const { ValueType } = item;
+      const ReferencedSOPSequence = IMAGEContentItem.ReferencedSOPSequence;
+      const coord = {
+        ValueType,
+        GraphicType,
+        GraphicData,
+        ReferencedSOPSequence,
+      };
+      measurement.coords.push(coord);
+      measurement.labels.push({
+        label: ConceptNameCodeSequence.CodeMeaning,
+        labelCodingSchemeDesignator:
+          ConceptNameCodeSequence.CodingSchemeDesignator,
+        value: ConceptCodeSequence.CodeMeaning,
+        valueCodingSchemeDesignator: ConceptCodeSequence.CodingSchemeDesignator,
+      });
+    });
+  }
+
   return measurement;
 };
 

platform/core/src/DICOMSR/SCOORD3D/utils/processTID1410Measurement.js

@@ -5,14 +5,14 @@ import { RELATIONSHIP_TYPE, CodeNameCodeSequenceValues } from '../enums';
 /**
  * TID 1410 Planar ROI Measurements and Qualitative Evaluations.
  *
- * @param {*} mergedContentSequence
+ * @param {*} contentSequence
  * @returns
  */
-const processTID1410Measurement = (mergedContentSequence, displaySet) => {
+const processTID1410Measurement = contentSequence => {
   // Need to deal with TID 1410 style measurements, which will have a SCOORD or SCOORD3D at the top level,
   // And non-geometric representations where each NUM has "INFERRED FROM" SCOORD/SCOORD3D
 
-  const graphicItem = mergedContentSequence.find(
+  const graphicItem = contentSequence.find(
     group => group.ValueType === 'SCOORD' || group.ValueType === 'SCOORD3D'
   );
 
@@ -23,24 +23,24 @@ const processTID1410Measurement = (mergedContentSequence, displaySet) => {
     return;
   }
 
-  const UIDREFContentItem = mergedContentSequence.find(
+  const UIDREFContentItem = contentSequence.find(
     group => group.ValueType === 'UIDREF'
   );
 
-  const TrackingIdentifierContentItem = mergedContentSequence.find(
+  const TrackingIdentifierContentItem = contentSequence.find(
     item =>
       item.ConceptNameCodeSequence.CodeValue ===
       CodeNameCodeSequenceValues.TrackingIdentifier
   );
 
-  const NUMContentItems = mergedContentSequence.filter(
+  const NUMContentItems = contentSequence.filter(
     group => group.ValueType === 'NUM'
   );
 
   const measurement = {
     loaded: false,
     labels: [],
-    coords: [getCoordsFromSCOORDOrSCOORD3D(graphicItem, displaySet)],
+    coords: [getCoordsFromSCOORDOrSCOORD3D(graphicItem)],
     TrackingUniqueIdentifier: UIDREFContentItem.UID,
     TrackingIdentifier: TrackingIdentifierContentItem.TextValue,
   };

platform/core/src/DICOMSR/parseDicomStructuredReport.js

@@ -21,16 +21,32 @@ const parseDicomStructuredReport = (
   displaySets,
   external
 ) => {
-  if (external && external.servicesManager) {
-    parseSCOORD3D({ servicesManager: external.servicesManager, displaySets });
-  }
-
   // Get the dicom data as an Object
   const dicomData = dcmjs.data.DicomMessage.readFile(part10SRArrayBuffer);
   const dataset = dcmjs.data.DicomMetaDictionary.naturalizeDataset(
     dicomData.dict
   );
 
+  const {
+    LoggerService,
+    UINotificationService,
+  } = external.servicesManager.services;
+  if (external && external.servicesManager) {
+    try {
+      parseSCOORD3D({ servicesManager: external.servicesManager, displaySets });
+    } catch (error) {
+      const seriesDescription = dataset.SeriesDescription || '';
+      LoggerService.error({ error, message: error.message });
+      UINotificationService.show({
+        title: `Failed to parse ${seriesDescription} SR display set`,
+        message: error.message,
+        type: 'error',
+        autoClose: false,
+      });
+      return;
+    }
+  }
+
   const { MeasurementReport } = dcmjs.adapters.Cornerstone;
 
   let storedMeasurementByToolType;
@@ -38,11 +54,12 @@ const parseDicomStructuredReport = (
     storedMeasurementByToolType = MeasurementReport.generateToolState(dataset);
   } catch (error) {
     const seriesDescription = dataset.SeriesDescription || '';
-    LogManager.publish(LogManager.EVENTS.OnLog, {
+    LoggerService.error({ error, message: error.message });
+    UINotificationService.show({
       title: `Failed to parse ${seriesDescription} measurement report`,
-      type: 'warning',
+      message: error.message,
-      message: error.message || '',
+      type: 'error',
-      notify: true,
+      autoClose: false,
     });
     return;
   }

platform/core/src/classes/HotkeysManager.js

@@ -67,12 +67,13 @@ export class HotkeysManager {
         UINotificationService,
         LoggerService,
       } = this._servicesManager.services;
-      const message = 'Erro while setting hotkeys';
+      const message = 'Error while setting hotkeys';
       LoggerService.error({ error, message });
       UINotificationService.show({
         title: 'Hotkeys Manager',
         message,
         type: 'error',
+        autoClose: false,
       });
     }
   }

platform/core/src/classes/StudyLoadingListener.js

@@ -401,7 +401,7 @@ class StackLoadingListener extends BaseLoadingListener {
     const totalFramesCount = this.stack.imageIds.length;
     const loadedFramesCount = this.loadedCount;
     const loadingFramesCount = totalFramesCount - loadedFramesCount;
-    const percentComplete = Math.round(
+    const percentComplete = Math.ceil(
       (loadedFramesCount / totalFramesCount) * 100
     );
     const progressId = this._getProgressId();
@@ -469,8 +469,8 @@ class StudyLoadingListener {
 
       // TODO: Make this work for plugins
       if (!stack) {
-        console.warn('Skipping adding displaySet to StudyLoadingListener');
+        //console.warn('Skipping adding displaySet to StudyLoadingListener');
-        console.warn(displaySet);
+        //console.warn(displaySet);
         return;
       }
 

platform/core/src/classes/metadata/StudyMetadata.js

@@ -3,12 +3,12 @@ import DICOMWeb from './../../DICOMWeb';
 import ImageSet from './../ImageSet';
 import { InstanceMetadata } from './InstanceMetadata';
 import { Metadata } from './Metadata';
-import OHIFError from '../OHIFError';
 import { SeriesMetadata } from './SeriesMetadata';
 // - createStacks
 import { api } from 'dicomweb-client';
 // - createStacks
 import { isImage } from '../../utils/isImage';
+import { naturalizeSOPClassUID } from '../../utils/naturalizeSOPClassUID';
 import {
   isDisplaySetReconstructable,
   isSpacingUniform,
@@ -169,8 +169,12 @@ class StudyMetadata extends Metadata {
         !isImage(instance.getTagValue('SOPClassUID')) &&
         !instance.getTagValue('Rows')
       ) {
-        // we set an empty display and we add a isModalitySupported variable to
+        // we set an empty display and we add a isSOPClassUIDSupported variable to
-        // print a warning that the modality is not supported in the thumbnail.
+        // print a warning that the series is not supported in the thumbnail.
+        // SOPClassUIDNaturalized is human readable name, since for non image series,
+        // we could have a mismatch between the SOPClassUID and the Modality.
+        // For example, in the Parametric map IOD Modality is expected to match
+        // the value for the series used to generate Parametric map, and there is no "PM" modality.
         const displaySet = new ImageSet([]);
         const seriesData = series.getData();
         displaySet.setAttributes({
@@ -188,7 +192,10 @@ class StudyMetadata extends Metadata {
           InstanceNumber: instance.getTagValue('InstanceNumber'), // Include the instance number
           AcquisitionDatetime: instance.getTagValue('AcquisitionDateTime'), // Include the acquisition datetime
           isReconstructable: false,
-          isModalitySupported: false,
+          isSOPClassUIDSupported: false,
+          SOPClassUIDNaturalized: naturalizeSOPClassUID(
+            instance.getTagValue('SOPClassUID')
+          ),
           metadata: instance.getData().metadata,
         });
 
@@ -268,6 +275,8 @@ class StudyMetadata extends Metadata {
 
     const otherDisplaySets = allDisplaySets.filter(
       ds =>
+        ds &&
+        derivatedDisplaySet &&
         ds.displaySetInstanceUID !== derivatedDisplaySet.displaySetInstanceUID
     );
 
@@ -333,10 +342,38 @@ class StudyMetadata extends Metadata {
     if (referencedSeriesInstanceUID) {
       filteredDerivedDisplaySets = filteredDerivedDisplaySets.filter(
         displaySet => {
-          return (
+          const referencedDisplaySet = StudyMetadata.getReferencedDisplaySet(
-            StudyMetadata.getReferencedDisplaySet(displaySet, [this])
+            displaySet,
-              .SeriesInstanceUID === referencedSeriesInstanceUID
+            [this]
           );
+          if (referencedDisplaySet) {
+            return (
+              referencedDisplaySet.SeriesInstanceUID ===
+              referencedSeriesInstanceUID
+            );
+          } else {
+            if (
+              !displaySet.referencedDisplaySets ||
+              displaySet.referencedDisplaySets.length === 0
+            ) {
+              return false;
+            }
+
+            const filteredReferencedDisplaySets = displaySet.referencedDisplaySets.filter(
+              referencedDisplaySet =>
+                referencedDisplaySet.SeriesInstanceUID ===
+                referencedSeriesInstanceUID
+            );
+
+            if (
+              filteredReferencedDisplaySets &&
+              filteredReferencedDisplaySets.length !== 0
+            ) {
+              return true;
+            }
+
+            return false;
+          }
         }
       );
     }
@@ -923,7 +960,7 @@ const makeDisplaySet = (series, instances) => {
       : displayReconstructableInfo.reconstructionIssues;
   }
 
-  imageSet.isModalitySupported = true;
+  imageSet.isSOPClassUIDSupported = true;
 
   return imageSet;
 };

platform/core/src/measurements/tools/dicomSRDisplayTool.js

@@ -6,7 +6,8 @@ export const dicomSRDisplayTool = {
   options: {
     measurementTable: {
       displayFunction: data => {
-        return `(SR) ${data.lesionNamingNumber ||
+        return `(SR) ${data.TrackingIdentifier ||
+          data.lesionNamingNumber ||
           data.measurementNumber ||
           data.text ||
           ''}`;

platform/core/src/services/MeasurementService/MeasurementService.js

@@ -420,6 +420,10 @@ class MeasurementService {
       throw new Error('No source definition provided.');
     }
 
+    if (definition == 'stack' || definition == 'stackPrefetch') {
+      return;
+    }
+
     const sourceInfo = this._getSourceInfo(source);
 
     if (!this._sourceHasMappings(source)) {

platform/core/src/studies/retrieveStudyMetadata.test.js

@@ -19,17 +19,4 @@ describe('retrieveStudyMetadata.js', () => {
 
     expect(callWithNoStudyInstanceUID).toThrow(Error);
   });
-
-  it('caches and returns the same promise for identical studyInstanceUIDs', () => {
-    const firstPromise = retrieveStudyMetadata(
-      fakeDicomWebServer,
-      'fake-study-instance-uid'
-    );
-    const secondPromise = retrieveStudyMetadata(
-      fakeDicomWebServer,
-      'fake-study-instance-uid'
-    );
-
-    expect(firstPromise).toBe(secondPromise);
-  });
 });

platform/core/src/studies/services/wado/getReferencedSeriesSequence.js

@@ -21,6 +21,7 @@ const getReferencedSeriesSequence = instance => {
       const referencedInstanceSequenceRaw = referencedSeries['0008114A'];
       const referencedInstanceSequence = [];
 
+      if (referencedInstanceSequenceRaw) {
         referencedInstanceSequenceRaw.Value.forEach(referencedInstance => {
           referencedInstanceSequence.push({
             referencedSOPClassUID: DICOMWeb.getString(
@@ -31,6 +32,7 @@ const getReferencedSeriesSequence = instance => {
             ),
           });
         });
+      }
 
       referencedSeriesSequence.push({
         referencedSeriesInstanceUID,

platform/core/src/studies/services/wado/studyInstanceHelpers.js

@@ -102,6 +102,35 @@ async function makeSOPInstance(server, study, instance) {
     SOPInstanceUID,
   } = naturalizedInstance;
 
+  const validate = string => {
+    let rgx = /[^.0-9]+/g;
+    return string.match(rgx);
+  };
+
+  if (StudyInstanceUID === undefined || validate(StudyInstanceUID)) {
+    const error =
+      'makeSOPInstance: StudyInstanceUID is not conforming with the UID (DICOM UI VR) character repertoire, skipping SOPInstance.';
+    console.error(error);
+
+    return;
+  }
+
+  if (SeriesInstanceUID === undefined || validate(SeriesInstanceUID)) {
+    const error =
+      'makeSOPInstance: SeriesInstanceUID is not conforming with the UID (DICOM UI VR) character repertoire, skipping SOPInstance.';
+    console.error(error);
+
+    return;
+  }
+
+  if (SOPInstanceUID === undefined || validate(SOPInstanceUID)) {
+    const error =
+      'makeSOPInstance: SOPInstanceUID is not conforming with the UID (DICOM UI VR) character repertoire, skipping SOPInstance.';
+    console.error(error);
+
+    return;
+  }
+
   let series = study.seriesMap[SeriesInstanceUID];
 
   if (!series) {

platform/core/src/utils/StackManager.js

@@ -25,7 +25,7 @@ function createAndAddStack(stackMap, study, displaySet, stackUpdatedCallbacks) {
   const imageIds = [];
   let imageId;
 
-  displaySet.images.forEach((instance, imageIndex) => {
+  images.forEach((instance, imageIndex) => {
     const image = instance.getData();
     const metaData = {
       instance: image, // in this context, instance will be the data of the InstanceMetadata object...
@@ -35,7 +35,7 @@ function createAndAddStack(stackMap, study, displaySet, stackUpdatedCallbacks) {
       imageIndex: imageIndex + 1,
     };
 
-    const naturalizedInstance = instance.getData().metadata;
+    const naturalizedInstance = image.metadata;
     const NumberOfFrames = naturalizedInstance.NumberOfFrames;
 
     if (NumberOfFrames > 1) {

platform/core/src/utils/loadAndCacheDerivedDisplaySets.js

@@ -49,7 +49,12 @@ import studyMetadataManager from './studyMetadataManager';
  * @param {object} snackbar
  * @returns void
  */
-async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, logger, snackbar) {
+async function loadAndCacheDerivedDisplaySets(
+  referencedDisplaySet,
+  studies,
+  logger,
+  snackbar
+) {
   const { StudyInstanceUID, SeriesInstanceUID } = referencedDisplaySet;
   const promises = [];
   const studyMetadata = studyMetadataManager.get(StudyInstanceUID);
@@ -80,7 +85,8 @@ async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, log
   });
 
   // For each type, see if any are loaded, if not load the most recent.
-  await Promise.all(Object.keys(displaySetsPerModality).map(async (key) => {
+  await Promise.all(
+    Object.keys(displaySetsPerModality).map(async key => {
       const displaySets = displaySetsPerModality[key];
 
       const isLoaded = displaySets.some(displaySet => displaySet.isLoaded);
@@ -107,9 +113,66 @@ async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, log
       });
 
       try {
-      if (recentDisplaySet.hasOwnProperty('getSourceDisplaySet') &&
+        if (
-        typeof recentDisplaySet.getSourceDisplaySet === 'function') {
+          recentDisplaySet.hasOwnProperty('getSourceDisplaySet') &&
+          typeof recentDisplaySet.getSourceDisplaySet === 'function'
+        ) {
+          if (recentDisplaySet.Modality === 'SEG' && logger) {
+            const onDisplaySetLoadFailureHandler = error => {
+              const message =
+                error.message.includes('orthogonal') ||
+                error.message.includes('oblique')
+                  ? 'The segmentation has been detected as non coplanar,\
+                    If you really think it is coplanar,\
+                    please adjust the tolerance in the segmentation panel settings (at your own peril!)'
+                  : error.message;
+
+              logger.error({ error, message });
+              snackbar.show({
+                title: 'DICOM Segmentation Loader',
+                message,
+                type: 'error',
+                autoClose: false,
+              });
+            };
+
+            let activatedLabelmapIndex = -1;
+            while (activatedLabelmapIndex == -1) {
+              const {
+                referencedDisplaySet,
+                activatedLabelmapPromise,
+              } = await recentDisplaySet.getSourceDisplaySet(
+                studies,
+                true,
+                onDisplaySetLoadFailureHandler
+              );
+
+              activatedLabelmapIndex = await activatedLabelmapPromise;
+              const selectionFired = new CustomEvent(
+                'extensiondicomsegmentationsegselected',
+                {
+                  detail: { activatedLabelmapIndex: activatedLabelmapIndex },
+                }
+              );
+              document.dispatchEvent(selectionFired);
+
+              const lastDateTime = Number(
+                `${recentDisplaySet.SeriesDate}${recentDisplaySet.SeriesTime}`
+              );
+              recentDateTime = 0;
+              displaySets.forEach(displaySet => {
+                const dateTime = Number(
+                  `${displaySet.SeriesDate}${displaySet.SeriesTime}`
+                );
+                if (dateTime > recentDateTime && dateTime < lastDateTime) {
+                  recentDateTime = dateTime;
+                  recentDisplaySet = displaySet;
+                }
+              });
+            }
+          } else {
             await recentDisplaySet.getSourceDisplaySet(studies);
+          }
         } else {
           await recentDisplaySet.load(referencedDisplaySet, studies);
         }
@@ -125,7 +188,8 @@ async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, log
           autoClose: false,
         });
       }
-  }));
+    })
+  );
 
   /*
    * TODO: Improve the way we notify parts of the app
@@ -134,6 +198,6 @@ async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, log
    */
   const event = new CustomEvent('deriveddisplaysetsloadedandcached');
   document.dispatchEvent(event);
-};
+}
 
 export default loadAndCacheDerivedDisplaySets;

platform/core/src/utils/naturalizeSOPClassUID.js

@@ -0,0 +1,200 @@
+import { sopClassDictionary } from './sopClassDictionary';
+import { isImage } from './isImage';
+
+/**
+ * Naturalize SOP Class UID which do not have image data
+ * @param {string} SOPClassUID - SOP Class UID to be converted
+ * @returns {string} - human readable name
+ */
+export const naturalizeSOPClassUID = SOPClassUID => {
+  let naturalizedName = '';
+  if (!SOPClassUID) return naturalizedName;
+  if (!isImage) return naturalizedName;
+
+  if (sopClassDictionary.MRSpectroscopyStorage === SOPClassUID) {
+    naturalizedName = 'MRSpectroscopy';
+  } else if (sopClassDictionary.EnhancedUSVolumeStorage === SOPClassUID) {
+    naturalizedName = 'EnhancedUSVolume';
+  } else if (sopClassDictionary.Sop12LeadECGWaveformStorage === SOPClassUID) {
+    naturalizedName = 'Sop12LeadECGWaveform';
+  } else if (sopClassDictionary.GeneralECGWaveformStorage === SOPClassUID) {
+    naturalizedName = 'GeneralECGWaveform';
+  } else if (sopClassDictionary.AmbulatoryECGWaveformStorage === SOPClassUID) {
+    naturalizedName = 'AECAmbulatoryECGWaveformGW';
+  } else if (sopClassDictionary.HemodynamicWaveformStorage === SOPClassUID) {
+    naturalizedName = 'HemodynamicWaveform';
+  } else if (
+    sopClassDictionary.CardiacElectrophysiologyWaveformStorage === SOPClassUID
+  ) {
+    naturalizedName = 'CardiacElectrophysiologyWaveform';
+  } else if (
+    sopClassDictionary.BasicVoiceAudioWaveformStorage === SOPClassUID
+  ) {
+    naturalizedName = 'BasicVoiceAudioWaveform';
+  } else if (sopClassDictionary.GeneralAudioWaveformStorage === SOPClassUID) {
+    naturalizedName = 'GGeneralAudioWaveformAW';
+  } else if (sopClassDictionary.ArterialPulseWaveformStorage === SOPClassUID) {
+    naturalizedName = 'APArterialPulseWaveformW';
+  } else if (sopClassDictionary.RespiratoryWaveformStorage === SOPClassUID) {
+    naturalizedName = 'RespiratoryWaveform';
+  } else if (
+    sopClassDictionary.GrayscaleSoftcopyPresentationStateStorage === SOPClassUID
+  ) {
+    naturalizedName = 'GrayscaleSoftcopyPresentationState';
+  } else if (
+    sopClassDictionary.ColorSoftcopyPresentationStateStorage === SOPClassUID
+  ) {
+    naturalizedName = 'ColorSoftcopyPresentationState';
+  } else if (
+    sopClassDictionary.PseudoColorSoftcopyPresentationStateStorage ===
+    SOPClassUID
+  ) {
+    naturalizedName = 'PseudoColorSoftcopyPresentationState';
+  } else if (
+    sopClassDictionary.BlendingSoftcopyPresentationStateStorage === SOPClassUID
+  ) {
+    naturalizedName = 'BlendingSoftcopyPresentationState';
+  } else if (
+    sopClassDictionary.XAXRFGrayscaleSoftcopyPresentationStateStorage ===
+    SOPClassUID
+  ) {
+    naturalizedName = 'XAXRFGrayscaleSoftcopyPresentationState';
+  } else if (sopClassDictionary.RawDataStorage === SOPClassUID) {
+    naturalizedName = 'RawData';
+  } else if (sopClassDictionary.SpatialRegistrationStorage === SOPClassUID) {
+    naturalizedName = 'SpatialRegistration';
+  } else if (sopClassDictionary.SpatialFiducialsStorage === SOPClassUID) {
+    naturalizedName = 'SpatialFiducials';
+  } else if (
+    sopClassDictionary.DeformableSpatialRegistrationStorage === SOPClassUID
+  ) {
+    naturalizedName = 'DeformableSpatialRegistration';
+  } else if (sopClassDictionary.SegmentationStorage === SOPClassUID) {
+    naturalizedName = 'SEG';
+  } else if (sopClassDictionary.SurfaceSegmentationStorage === SOPClassUID) {
+    naturalizedName = 'SurfaceSEG';
+  } else if (sopClassDictionary.RealWorldValueMappingStorage === SOPClassUID) {
+    naturalizedName = 'RealWorldValueMapping';
+  } else if (sopClassDictionary.SurfaceScanMeshStorage === SOPClassUID) {
+    naturalizedName = 'SurfaceScanMesh';
+  } else if (sopClassDictionary.SurfaceScanPointCloudStorage === SOPClassUID) {
+    naturalizedName = 'SurfaceScanPointCloud';
+  } else if (
+    sopClassDictionary.StereometricRelationshipStorage === SOPClassUID
+  ) {
+    naturalizedName = 'StereometricRelationship';
+  } else if (sopClassDictionary.LensometryMeasurementsStorage === SOPClassUID) {
+    naturalizedName = 'LensometryMeasurements';
+  } else if (
+    sopClassDictionary.AutorefractionMeasurementsStorage === SOPClassUID
+  ) {
+    naturalizedName = 'AutorefractionMeasurements';
+  } else if (
+    sopClassDictionary.KeratometryMeasurementsStorage === SOPClassUID
+  ) {
+    naturalizedName = 'KeratometryMeasurements';
+  } else if (
+    sopClassDictionary.SubjectiveRefractionMeasurementsStorage === SOPClassUID
+  ) {
+    naturalizedName = 'SubjectiveRefractionMeasurements';
+  } else if (
+    sopClassDictionary.VisualAcuityMeasurementsStorage === SOPClassUID
+  ) {
+    naturalizedName = 'VisualAcuityMeasurements';
+  } else if (
+    sopClassDictionary.SpectaclePrescriptionReportStorage === SOPClassUID
+  ) {
+    naturalizedName = 'SpectaclePrescriptionReport';
+  } else if (
+    sopClassDictionary.OphthalmicAxialMeasurementsStorage === SOPClassUID
+  ) {
+    naturalizedName = 'OphthalmicAxialMeasurements';
+  } else if (
+    sopClassDictionary.IntraocularLensCalculationsStorage === SOPClassUID
+  ) {
+    naturalizedName = 'IntraocularLensCalculations';
+  } else if (
+    sopClassDictionary.MacularGridThicknessandVolumeReport === SOPClassUID
+  ) {
+    naturalizedName = 'MacularGridThicknessandVolume';
+  } else if (
+    sopClassDictionary.OphthalmicVisualFieldStaticPerimetryMeasurementsStorage ===
+    SOPClassUID
+  ) {
+    naturalizedName = 'OphthalmicVisualFieldStaticPerimetryMeasurements';
+  } else if (sopClassDictionary.OphthalmicThicknessMapStorage === SOPClassUID) {
+    naturalizedName = 'OphthalmicThicknessMap';
+  } else if (sopClassDictionary.CornealTopographyMapStorage === SOPClassUID) {
+    naturalizedName = 'CornealTopographyMap';
+  } else if (sopClassDictionary.BasicTextSR === SOPClassUID) {
+    naturalizedName = 'BasicTextSR';
+  } else if (sopClassDictionary.EnhancedSR === SOPClassUID) {
+    naturalizedName = 'EnhancedSR';
+  } else if (sopClassDictionary.ComprehensiveSR === SOPClassUID) {
+    naturalizedName = 'ComprehensiveSR';
+  } else if (sopClassDictionary.Comprehensive3DSR === SOPClassUID) {
+    naturalizedName = 'Comprehensive3DSR';
+  } else if (sopClassDictionary.ProcedureLog === SOPClassUID) {
+    naturalizedName = 'ProcedureLog';
+  } else if (sopClassDictionary.MammographyCADSR === SOPClassUID) {
+    naturalizedName = 'MammographyCADSR';
+  } else if (sopClassDictionary.KeyObjectSelection === SOPClassUID) {
+    naturalizedName = 'KeyObject';
+  } else if (sopClassDictionary.ChestCADSR === SOPClassUID) {
+    naturalizedName = 'ChestCADSR';
+  } else if (sopClassDictionary.XRayRadiationDoseSR === SOPClassUID) {
+    naturalizedName = 'XRayRadiationDoseSR';
+  } else if (
+    sopClassDictionary.RadiopharmaceuticalRadiationDoseSR === SOPClassUID
+  ) {
+    naturalizedName = 'RadiopharmaceuticalRadiationDoseSR';
+  } else if (sopClassDictionary.ColonCADSR === SOPClassUID) {
+    naturalizedName = 'ColonCADSR';
+  } else if (
+    sopClassDictionary.ImplantationPlanSRDocumentStorage === SOPClassUID
+  ) {
+    naturalizedName = 'ImplantationPlanSRDocument';
+  } else if (sopClassDictionary.EncapsulatedPDFStorage === SOPClassUID) {
+    naturalizedName = 'EncapsulatedPDF';
+  } else if (sopClassDictionary.EncapsulatedCDAStorage === SOPClassUID) {
+    naturalizedName = 'EncapsulatedCDA';
+  } else if (sopClassDictionary.BasicStructuredDisplayStorage === SOPClassUID) {
+    naturalizedName = 'BasicStructuredDisplay';
+  } else if (sopClassDictionary.RTDoseStorage === SOPClassUID) {
+    naturalizedName = 'RTDose';
+  } else if (sopClassDictionary.RTStructureSetStorage === SOPClassUID) {
+    naturalizedName = 'RTStructureSet';
+  } else if (sopClassDictionary.RTBeamsTreatmentRecordStorage === SOPClassUID) {
+    naturalizedName = 'RTBeamsTreatmentRecord';
+  } else if (sopClassDictionary.RTPlanStorage === SOPClassUID) {
+    naturalizedName = 'RTPlan';
+  } else if (
+    sopClassDictionary.RTBrachyTreatmentRecordStorage === SOPClassUID
+  ) {
+    naturalizedName = 'RTBrachyTreatmentRecord';
+  } else if (
+    sopClassDictionary.RTTreatmentSummaryRecordStorage === SOPClassUID
+  ) {
+    naturalizedName = 'RTTreatmentSummaryRecord';
+  } else if (sopClassDictionary.RTIonPlanStorage === SOPClassUID) {
+    naturalizedName = 'RTIonPlan';
+  } else if (
+    sopClassDictionary.RTIonBeamsTreatmentRecordStorage === SOPClassUID
+  ) {
+    naturalizedName = 'RTIonBeamsTreatmentRecord';
+  } else if (
+    sopClassDictionary.RTBeamsDeliveryInstructionStorage === SOPClassUID
+  ) {
+    naturalizedName = 'RTBeamsDeliveryInstruction';
+  } else if (sopClassDictionary.GenericImplantTemplateStorage === SOPClassUID) {
+    naturalizedName = 'GenericImplantTemplate';
+  } else if (
+    sopClassDictionary.ImplantAssemblyTemplateStorage === SOPClassUID
+  ) {
+    naturalizedName = 'ImplantAssemblyTemplate';
+  } else if (sopClassDictionary.ImplantTemplateGroupStorage === SOPClassUID) {
+    naturalizedName = 'ImplantTemplateGroup';
+  }
+
+  return naturalizedName;
+};

platform/ui/CHANGELOG.md

@@ -3,6 +3,38 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.10.11](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.10...@ohif/ui@1.10.11) (2023-03-19)
+
+**Note:** Version bump only for package @ohif/ui
+
+
+
+
+
+## [1.10.10](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.9...@ohif/ui@1.10.10) (2022-08-24)
+
+**Note:** Version bump only for package @ohif/ui
+
+
+
+
+
+## [1.10.9](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.8...@ohif/ui@1.10.9) (2022-06-29)
+
+**Note:** Version bump only for package @ohif/ui
+
+
+
+
+
+## [1.10.8](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.7...@ohif/ui@1.10.8) (2022-04-06)
+
+**Note:** Version bump only for package @ohif/ui
+
+
+
+
+
 ## [1.10.7](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.10.6...@ohif/ui@1.10.7) (2022-03-14)
 
 

platform/ui/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/ui",
-  "version": "1.10.7",
+  "version": "1.10.11",
   "description": "A set of React components for Medical Imaging Viewers",
   "author": "OHIF Contributors",
   "license": "MIT",
@@ -45,7 +45,7 @@
     "i18next-browser-languagedetector": "^3.0.1",
     "lodash.debounce": "^4.0.8",
     "lodash.isequal": "4.5.0",
-    "moment": "2.24.0",
+    "moment": "2.29.4",
     "prop-types": "15.6.2",
     "prop-types-extra": "^1.1.1",
     "react-dates": "21.2.1",

platform/ui/src/components/measurementTable/MeasurementTableItem.js

@@ -9,6 +9,14 @@ import { TableListItem } from './../tableList/TableListItem.js';
 
 import './MeasurementTableItem.styl';
 
+const ColoredCircle = ({ color }) => {
+  return <div className="item-color" style={{ backgroundColor: color }}></div>;
+};
+
+ColoredCircle.propTypes = {
+  color: PropTypes.string.isRequired,
+};
+
 class MeasurementTableItem extends Component {
   static propTypes = {
     measurementData: PropTypes.object.isRequired,
@@ -21,6 +29,14 @@ class MeasurementTableItem extends Component {
     t: PropTypes.func,
   };
 
+  constructor(props) {
+    super(props);
+    this.state = {
+      collapsed: true,
+      visible: true,
+    };
+  }
+
   render() {
     const {
       warningTitle = '',
@@ -93,8 +109,95 @@ class MeasurementTableItem extends Component {
       actionButtons.push(deleteButton);
     }
 
+    if (
+      this.props.measurementData.isSRText === true &&
+      this.props.measurementData.labels &&
+      this.props.measurementData.labels.length > 0
+    ) {
+      return (
+        <React.Fragment>
+          <TableListItem
+            key={this.props.measurementData.measurementNumber}
+            itemKey={this.props.measurementData.measurementNumber}
+            itemClass={`measurementItem ${this.props.itemClass} ${hasWarningClass}`}
+            itemIndex={this.props.itemIndex}
+            onItemClick={this.onItemClick}
+          >
+            <div>
+              <div className="measurementLocation">
+                {this.props.t(this.props.measurementData.label, {
+                  keySeparator: '>',
+                  nsSeparator: '|',
+                })}
+              </div>
+            </div>
+            <div className="icons">
+              <div className="displayTexts">{this.getDataDisplayText()}</div>
+              <Icon
+                className={`eye-icon`}
+                name={this.state.visible ? 'eye' : 'eye-closed'}
+                width="20px"
+                height="20px"
+                onClick={() => {
+                  this.props.measurementData.labels.forEach(label => {
+                    label.visible = !this.state.visible;
+                  });
+
+                  this.setState({
+                    visible: !this.state.visible,
+                  });
+                }}
+              />
+              <Icon
+                className={`angle-double-${
+                  this.state.collapsed ? 'down' : 'up'
+                }`}
+                name={`angle-double-${this.state.collapsed ? 'down' : 'up'}`}
+                width="20px"
+                height="20px"
+                onClick={() => {
+                  this.setState({
+                    collapsed: !this.state.collapsed,
+                  });
+                }}
+              />
+            </div>
+          </TableListItem>
+          {this.state.collapsed &&
+            this.props.measurementData.labels.map((SRLabel, index) => {
               return (
                 <TableListItem
+                  key={index}
+                  itemKey={index}
+                  itemMeta={<ColoredCircle color={SRLabel.color} />}
+                  itemMetaClass="item-color-section"
+                  onItemClick={this.onItemClick}
+                >
+                  <div>
+                    <div className="icons">
+                      <span style={{ width: '90px' }}>
+                        {SRLabel.label + ' : ' + SRLabel.value}
+                      </span>
+                      <Icon
+                        className={`eye-icon`}
+                        name={SRLabel.visible ? 'eye' : 'eye-closed'}
+                        width="20px"
+                        height="20px"
+                        onClick={() => {
+                          SRLabel.visible = !SRLabel.visible;
+                        }}
+                      />
+                    </div>
+                  </div>
+                </TableListItem>
+              );
+            })}
+        </React.Fragment>
+      );
+    } else {
+      return (
+        <TableListItem
+          key={this.props.measurementData.measurementNumber}
           itemKey={this.props.measurementData.measurementNumber}
           itemClass={`measurementItem ${this.props.itemClass} ${hasWarningClass}`}
           itemIndex={this.props.itemIndex}
@@ -114,6 +217,7 @@ class MeasurementTableItem extends Component {
           </div>
         </TableListItem>
       );
+    }
   };
 
   onItemClick = event => {

platform/ui/src/components/measurementTable/MeasurementTableItem.styl

@@ -1,4 +1,16 @@
 .measurementItem
+  .item-color-section
+    display: flex;
+    justify-content: center;
+    align-items: center;
+    flex-direction: column;
+
+ .item-color
+    margin-top: 8px;
+    border-radius: 100%;
+    width: 20px;
+    height: 20px;
+
   .rowActions
       margin-left: -1px;
       background-color: var(--ui-gray-darker)
@@ -63,3 +75,16 @@
         width: 22px;
         height: 20px;
         pointer-events: inherit;
+
+.icons
+  display: flex;
+  align-items: center;
+  border-radius: 5px;
+
+.icons .eye-icon
+  margin-left: 100px;
+  margin-right: -5px;
+.icons .angle-double-down
+.icons .angle-double-up
+  margin-left: 15px;
+  margin-right: -5px;

platform/ui/src/components/studyBrowser/Thumbnail.js

@@ -177,8 +177,10 @@ function Thumbnail(props) {
       const { progressId, progressData } = detail;
       if (`StackProgress:${displaySetInstanceUID}` === progressId) {
         const percent = progressData ? progressData.percentComplete : 0;
+        if (percent > stackPercentComplete) {
           setStackPercentComplete(percent);
         }
+      }
     }, 100);
 
     document.addEventListener(

platform/ui/src/components/studyBrowser/Thumbnail.styl

@@ -25,7 +25,8 @@
     box-shadow: inset 0 0 0 1px var(--ui-border-color-dark);
     border: 2px solid transparent;
     border-radius: 12px;
-    height: 135px;
+    min-height: 135px;
+    max-height: 250px;
     margin: 0 auto;
     padding: 5px;
     position: relative;
@@ -36,6 +37,11 @@
     h1
       text-align: center
       color: var(--text-primary-color);
+      max-width: 200px;
+      max-height: 250px;
+      overflow-wrap: break-word;
+      word-wrap: break-word;
+      hyphens: auto;
 
   .series-details
     display: flex;

platform/ui/src/components/tableList/TableList.styl

@@ -18,6 +18,7 @@ $headerRowHeight = 63px
 
     .tableListHeaderTitle
       color: var(--text-secondary-color)
+      max-width: 230px
       font-size: 22px
       font-weight: 300
       line-height: $headerRowHeight

platform/ui/src/components/tableList/TableListItem.js

@@ -12,16 +12,13 @@ export class TableListItem extends Component {
     itemIndex: PropTypes.number,
     itemMeta: PropTypes.node,
     itemMetaClass: PropTypes.string,
-    itemKey: PropTypes.oneOfType([
+    itemKey: PropTypes.oneOfType([PropTypes.string, PropTypes.number]),
-      PropTypes.string,
-      PropTypes.number,
-    ]),
     onItemClick: PropTypes.func.isRequired,
   };
 
   static defaultProps = {
     itemMeta: null,
-    itemMetaClass: ''
+    itemMetaClass: '',
   };
 
   render() {

platform/viewer/CHANGELOG.md

@@ -3,6 +3,247 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [4.12.51](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.50...@ohif/viewer@4.12.51) (2023-03-19)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.50](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.49...@ohif/viewer@4.12.50) (2023-01-17)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.49](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.48...@ohif/viewer@4.12.49) (2023-01-10)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.48](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.47...@ohif/viewer@4.12.48) (2022-12-21)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.47](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.46...@ohif/viewer@4.12.47) (2022-12-21)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.46](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.45...@ohif/viewer@4.12.46) (2022-12-12)
+
+
+### Bug Fixes
+
+* [#2964](https://github.com/OHIF/Viewers/issues/2964) Reword message for segmentation error loading due to orientation tolerance ([#3017](https://github.com/OHIF/Viewers/issues/3017)) ([597ac11](https://github.com/OHIF/Viewers/commit/597ac11c4daee1b1e14148804551e20611cfef08))
+
+
+
+
+
+## [4.12.45](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.44...@ohif/viewer@4.12.45) (2022-11-12)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.44](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.43...@ohif/viewer@4.12.44) (2022-11-02)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.43](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.42...@ohif/viewer@4.12.43) (2022-10-28)
+
+
+### Bug Fixes
+
+* [#2964](https://github.com/OHIF/Viewers/issues/2964) Update message for segmentation error loading due to orientation tolerance ([#2982](https://github.com/OHIF/Viewers/issues/2982)) ([545161d](https://github.com/OHIF/Viewers/commit/545161d5e8d92bb6652f17dc24a36dac8aa7b3a4))
+
+
+
+
+
+## [4.12.42](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.41...@ohif/viewer@4.12.42) (2022-10-25)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.41](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.40...@ohif/viewer@4.12.41) (2022-09-26)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.40](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.39...@ohif/viewer@4.12.40) (2022-09-20)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.39](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.38...@ohif/viewer@4.12.39) (2022-09-19)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.38](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.37...@ohif/viewer@4.12.38) (2022-09-12)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.37](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.36...@ohif/viewer@4.12.37) (2022-09-12)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.36](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.35...@ohif/viewer@4.12.36) (2022-09-08)
+
+
+### Bug Fixes
+
+* hotkey page up/down did not work ([#2910](https://github.com/OHIF/Viewers/issues/2910)) ([d74ad37](https://github.com/OHIF/Viewers/commit/d74ad370e091c8af2d93ec35f688c4ef902bab2b))
+
+
+
+
+
+## [4.12.35](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.34...@ohif/viewer@4.12.35) (2022-09-02)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.34](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.33...@ohif/viewer@4.12.34) (2022-09-01)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.33](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.32...@ohif/viewer@4.12.33) (2022-08-31)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.32](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.31...@ohif/viewer@4.12.32) (2022-08-25)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.31](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.30...@ohif/viewer@4.12.31) (2022-08-24)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.30](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.29...@ohif/viewer@4.12.30) (2022-06-30)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.29](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.28...@ohif/viewer@4.12.29) (2022-06-29)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.28](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.27...@ohif/viewer@4.12.28) (2022-06-28)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.27](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.26...@ohif/viewer@4.12.27) (2022-06-14)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.26](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.25...@ohif/viewer@4.12.26) (2022-04-22)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.25](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.24...@ohif/viewer@4.12.25) (2022-04-06)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.24](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.23...@ohif/viewer@4.12.24) (2022-04-05)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.23](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.22...@ohif/viewer@4.12.23) (2022-03-25)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
 ## [4.12.22](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.21...@ohif/viewer@4.12.22) (2022-03-14)
 
 **Note:** Version bump only for package @ohif/viewer

platform/viewer/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/viewer",
-  "version": "4.12.22",
+  "version": "4.12.51",
   "description": "OHIF Viewer",
   "author": "OHIF Contributors",
   "license": "MIT",
@@ -47,26 +47,26 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",
-    "@ohif/core": "^2.16.14",
+    "@ohif/core": "^2.16.35",
-    "@ohif/extension-cornerstone": "^2.12.8",
+    "@ohif/extension-cornerstone": "^2.12.16",
-    "@ohif/extension-debugging": "^0.3.2",
+    "@ohif/extension-debugging": "^0.3.3",
-    "@ohif/extension-dicom-html": "^1.3.19",
+    "@ohif/extension-dicom-html": "^1.3.24",
     "@ohif/extension-dicom-microscopy": "^0.52.0",
     "@ohif/extension-dicom-pdf": "^1.1.2",
-    "@ohif/extension-dicom-rt": "^0.7.9",
+    "@ohif/extension-dicom-rt": "^0.7.14",
-    "@ohif/extension-dicom-segmentation": "^0.7.9",
+    "@ohif/extension-dicom-segmentation": "^0.7.21",
-    "@ohif/extension-lesion-tracker": "^0.2.1",
+    "@ohif/extension-lesion-tracker": "^0.2.2",
-    "@ohif/extension-vtk": "^1.12.19",
+    "@ohif/extension-vtk": "^1.12.42",
     "@ohif/i18n": "^0.53.0",
-    "@ohif/ui": "^1.10.7",
+    "@ohif/ui": "^1.10.11",
     "@tanem/react-nprogress": "^1.1.25",
     "classnames": "^2.2.6",
     "core-js": "^3.2.1",
     "cornerstone-core": "^2.6.1",
     "cornerstone-math": "^0.1.9",
     "cornerstone-tools": "^6.0.6",
-    "cornerstone-wado-image-loader": "^4.1.0",
+    "cornerstone-wado-image-loader": "^4.2.1",
-    "dcmjs": "0.19.7",
+    "dcmjs": "0.29.3",
     "dicom-parser": "^1.8.11",
     "dicomweb-client": "^0.8.3",
     "hammerjs": "^2.0.8",

platform/viewer/public/config/default.js

@@ -30,6 +30,7 @@ window.config = {
       },
     ],
   },
+
   // Extensions should be able to suggest default values for these?
   // Or we can require that these be explicitly set
   hotkeys: [

platform/viewer/src/appExtensions/GenericViewerCommands/commandsModule.js

@@ -1,4 +1,4 @@
-import { redux } from '@ohif/core';
+import { redux, utils } from '@ohif/core';
 import store from './../../store';
 
 const commandsModule = ({ commandsManager }) => {

platform/viewer/src/appExtensions/MeasurementsPanel/ConnectedMeasurementTable.js

@@ -122,6 +122,7 @@ function convertMeasurementsToTableData(toolCollections, timepoints) {
 
   Object.keys(toolCollections).forEach(toolId => {
     const toolMeasurements = toolCollections[toolId];
+
     const tool = tools.find(tool => tool.id === toolId);
     const { displayFunction } = tool.options.measurementTable;
 
@@ -131,12 +132,13 @@ function convertMeasurementsToTableData(toolCollections, timepoints) {
     Object.keys(groupedMeasurements).forEach(groupedMeasurementsIndex => {
       const measurementNumberList =
         groupedMeasurements[groupedMeasurementsIndex];
+
       const measurementData = measurementNumberList[0];
       const {
         measurementNumber,
         lesionNamingNumber,
         toolType,
-        isReadOnly
+        isReadOnly,
       } = measurementData;
       const measurementId = measurementData._id;
 
@@ -150,6 +152,8 @@ function convertMeasurementsToTableData(toolCollections, timepoints) {
       const tableMeasurement = {
         itemNumber: lesionNamingNumber,
         label: getMeasurementText(measurementData),
+        labels: measurementData.labels,
+        isSRText: measurementData.isSRText,
         measurementId,
         measurementNumber,
         lesionNamingNumber,

platform/viewer/src/appExtensions/MeasurementsPanel/jumpToRowItem.js

@@ -1,5 +1,5 @@
 import { measurements, utils } from '@ohif/core';
-
+import { servicesManager } from './../../App.js';
 const { MeasurementApi } = measurements;
 const { studyMetadataManager } = utils;
 
@@ -19,6 +19,25 @@ export default function jumpToRowItem(
   timepointManagerState,
   options = { invertViewportTimepointsOrder: false, childToolKey: null }
 ) {
+  const viewports = viewportsState.layout.viewports;
+  const activeViewportIndex = viewportsState.activeViewportIndex;
+  const activeViewport = viewports[activeViewportIndex];
+  if (activeViewport.vtk) {
+    const error = new Error('Measurements are not supported by the MPR mode.');
+    const { UINotificationService, LoggerService } = servicesManager.services;
+    LoggerService.error({ error, message: error.message });
+    UINotificationService.show({
+      title: 'Measurements panel',
+      message: error.message,
+      type: 'warning',
+      autoClose: true,
+    });
+    return {
+      viewportSpecificData: [],
+      layout: [], // TODO: if we need to change layout, we should return this here
+    };
+  }
+
   const numViewports = viewportsState.layout.viewports.length;
   const numTimepoints = timepointManagerState.timepoints.length;
   const { measurements, timepoints } = timepointManagerState;

platform/viewer/src/connectedComponents/ConnectedStudyBrowser.js

@@ -20,12 +20,20 @@ const mapDispatchToProps = (dispatch, ownProps) => {
         const { Modality } = displaySet;
         if (Modality === 'SEG' && servicesManager) {
           const onDisplaySetLoadFailureHandler = error => {
-            LoggerService.error({ error, message: error.message });
+            const message =
+              error.message.includes('orthogonal') ||
+              error.message.includes('oblique')
+                ? 'The segmentation has been detected as non coplanar,\
+                If you really think it is coplanar,\
+                please adjust the tolerance in the segmentation panel settings (at your own peril!)'
+                : error.message;
+
+            LoggerService.error({ error, message });
             UINotificationService.show({
               title: 'DICOM Segmentation Loader',
-              message: error.message,
+              message,
               type: 'error',
-              autoClose: true,
+              autoClose: false,
             });
           };
 
@@ -46,9 +54,11 @@ const mapDispatchToProps = (dispatch, ownProps) => {
                 detail: { activatedLabelmapIndex: activatedLabelmapIndex },
               }
             );
+            const segThumbnailSelected = new CustomEvent('segseriesselected');
             document.dispatchEvent(selectionFired);
+            document.dispatchEvent(segThumbnailSelected);
           });
-        } else {
+        } else if (Modality !== 'SR') {
           displaySet = displaySet.getSourceDisplaySet(ownProps.studyMetadata);
         }
 
@@ -79,7 +89,7 @@ const mapDispatchToProps = (dispatch, ownProps) => {
         });
       }
 
-      if (displaySet.isModalitySupported === false) {
+      if (displaySet.isSOPClassUIDSupported === false) {
         const error = new Error('Modality not supported');
         const message = 'Modality not supported';
         LoggerService.error({ error, message });

platform/viewer/src/connectedComponents/Viewer.js

@@ -105,6 +105,11 @@ class Viewer extends Component {
     if (this.props.dialog) {
       this.props.dialog.dismissAll();
     }
+
+    document.removeEventListener(
+      'segmentationLoadingError',
+      this._updateThumbnails
+    );
   }
 
   retrieveTimepoints = filter => {
@@ -212,6 +217,12 @@ class Viewer extends Component {
         ),
       });
     }
+
+    document.addEventListener(
+      'segmentationLoadingError',
+      this._updateThumbnails.bind(this),
+      false
+    );
   }
 
   componentDidUpdate(prevProps) {
@@ -251,10 +262,28 @@ class Viewer extends Component {
       const { currentTimepointId } = this;
 
       this.timepointApi.retrieveTimepoints({ PatientID });
-      this.measurementApi.retrieveMeasurements(PatientID, [currentTimepointId]);
+      this.measurementApi
+        .retrieveMeasurements(PatientID, [currentTimepointId])
+        .then(() => {
+          this._updateThumbnails();
+        });
     }
   }
 
+  _updateThumbnails() {
+    const { studies, activeViewportIndex, viewports } = this.props;
+
+    const activeViewport = viewports[activeViewportIndex];
+    const activeDisplaySetInstanceUID = activeViewport
+      ? activeViewport.displaySetInstanceUID
+      : undefined;
+
+    this.setState({
+      thumbnails: _mapStudiesToThumbnails(studies, activeDisplaySetInstanceUID),
+      activeDisplaySetInstanceUID,
+    });
+  }
+
   _getActiveViewport() {
     return this.props.viewports[this.props.activeViewportIndex];
   }
@@ -444,7 +473,7 @@ const _checkForDerivedDisplaySets = async function(displaySet, study) {
   let derivedDisplaySetsNumber = 0;
   if (
     displaySet.Modality &&
-    !['SEG', 'SR', 'RTSTRUCT', 'RTDOSE'].includes(displaySet.Modality)
+    !['SEG', 'SR', 'RTSTRUCT'].includes(displaySet.Modality)
   ) {
     const studyMetadata = studyMetadataManager.get(study.StudyInstanceUID);
 
@@ -461,9 +490,7 @@ const _checkForDerivedDisplaySets = async function(displaySet, study) {
 /**
  * Async function to check if there are any inconsistences in the series.
  *
- * For segmentation checks that the geometry is consistent with the source images:
+ * For segmentation returns any error during loading.
- * 1) no frames out of plane;
- * 2) have the same width and height.
  *
  * For reconstructable 3D volume:
  * 1) Is series multiframe?
@@ -477,18 +504,15 @@ const _checkForDerivedDisplaySets = async function(displaySet, study) {
  * @param {*object} displaySet
  * @returns {[string]} an array of strings containing the warnings
  */
-const _checkForSeriesInconsistencesWarnings = async function(
+const _checkForSeriesInconsistencesWarnings = async function(displaySet) {
-  displaySet,
-  studies
-) {
-  if (displaySet.inconsistencyWarnings) {
-    // warnings already checked and cached in displaySet
-    return displaySet.inconsistencyWarnings;
-  }
-
   const inconsistencyWarnings = [];
 
   if (displaySet.Modality !== 'SEG') {
+    // warnings already checked and cached in displaySet
+    if (displaySet.inconsistencyWarnings) {
+      return displaySet.inconsistencyWarnings;
+    }
+
     if (
       displaySet.reconstructionIssues &&
       displaySet.reconstructionIssues.length !== 0
@@ -543,101 +567,17 @@ const _checkForSeriesInconsistencesWarnings = async function(
       );
     }
 
-    if (displaySet.isModalitySupported === false) {
+    if (displaySet.isSOPClassUIDSupported === false) {
-      inconsistencyWarnings.push('The datasets modality is not supported.');
+      inconsistencyWarnings.push('The datasets is not supported.');
     }
-  } else {
-    const segMetadata = displaySet.metadata;
-    if (!segMetadata) {
-      return inconsistencyWarnings;
-    }
-
-    const { referencedDisplaySet } = displaySet.getSourceDisplaySet(
-      studies,
-      false
-    );
-    if (!referencedDisplaySet) {
-      return inconsistencyWarnings;
-    }
-
-    const imageIds = referencedDisplaySet.images.map(image =>
-      image.getImageId()
-    );
-    if (!imageIds || imageIds.length === 0) {
-      return inconsistencyWarnings;
-    }
-
-    for (
-      let i = 0,
-        groupsLen = segMetadata.PerFrameFunctionalGroupsSequence.length;
-      i < groupsLen;
-      ++i
-    ) {
-      const PerFrameFunctionalGroups =
-        segMetadata.PerFrameFunctionalGroupsSequence[i];
-      if (!PerFrameFunctionalGroups) {
-        continue;
-      }
-
-      let SourceImageSequence = undefined;
-      if (segMetadata.SourceImageSequence) {
-        SourceImageSequence = segMetadata.SourceImageSequence[i];
-      } else if (PerFrameFunctionalGroups.DerivationImageSequence) {
-        SourceImageSequence =
-          PerFrameFunctionalGroups.DerivationImageSequence.SourceImageSequence;
-      }
-      if (!SourceImageSequence) {
-        if (inconsistencyWarnings.length === 0) {
-          const warningMessage =
-            'The segmentation ' +
-            'has frames out of plane respect to the source images.';
-          inconsistencyWarnings.push(warningMessage);
-        }
-        continue;
-      }
-
-      const { ReferencedSOPInstanceUID } = SourceImageSequence;
-
-      const imageId = imageIds.find(imageId => {
-        const sopCommonModule = cornerstone.metaData.get(
-          'sopCommonModule',
-          imageId
-        );
-        if (!sopCommonModule) {
-          return;
-        }
-
-        return sopCommonModule.sopInstanceUID === ReferencedSOPInstanceUID;
-      });
-
-      if (!imageId) {
-        continue;
-      }
-
-      const sourceImageMetadata = cornerstone.metaData.get('instance', imageId);
-      if (
-        segMetadata.Rows !== sourceImageMetadata.Rows ||
-        segMetadata.Columns !== sourceImageMetadata.Columns
-      ) {
-        const warningMessage =
-          'The segmentation ' +
-          'has frames with different geometry ' +
-          'dimensions (Rows and Columns) respect to the source images.';
-        inconsistencyWarnings.push(warningMessage);
-        break;
-      }
-    }
-
-    if (inconsistencyWarnings.length !== 0) {
-      const warningMessage =
-        'The segmentation format is not supported yet. ' +
-        'The segmentation data (segments) could not be loaded.';
-      inconsistencyWarnings.push(warningMessage);
-    }
-  }
-
-  // cache the warnings
     displaySet.inconsistencyWarnings = inconsistencyWarnings;
+  } else {
+    if (displaySet.loadError) {
+      inconsistencyWarnings.push(displaySet.segLoadErrorMessagge);
+      displaySet.inconsistencyWarnings = inconsistencyWarnings;
+    }
+  }
+
   return inconsistencyWarnings;
 };
 
@@ -672,9 +612,29 @@ const _isDisplaySetActive = function(
   if (
     displaySet.Modality !== 'SEG' &&
     displaySet.Modality !== 'RTSTRUCT' &&
-    displaySet.Modality !== 'RTDOSE'
+    displaySet.Modality !== 'SR'
   ) {
     active = activeDisplaySetInstanceUID === displaySetInstanceUID;
+  } else if (displaySet.Modality === 'SR') {
+    active = activeDisplaySetInstanceUID === displaySetInstanceUID;
+
+    if (!active && displaySet.getSourceDisplaySet) {
+      const referencedDisplaySet = displaySet.getSourceDisplaySet(
+        studies,
+        false
+      );
+      if (referencedDisplaySet && referencedDisplaySet.length !== 0) {
+        for (let i = 0; i < referencedDisplaySet.length; i++) {
+          if (
+            referencedDisplaySet[i].displaySetInstanceUID ===
+            activeDisplaySetInstanceUID
+          ) {
+            active = true;
+            break;
+          }
+        }
+      }
+    }
   } else if (displaySet.getSourceDisplaySet) {
     if (displaySet.Modality === 'SEG') {
       const { referencedDisplaySet } = displaySet.getSourceDisplaySet(
@@ -725,21 +685,19 @@ const _mapStudiesToThumbnails = function(studies, activeDisplaySetInstanceUID) {
       let altImageText;
 
       if (displaySet.Modality && displaySet.Modality === 'SEG') {
-        // TODO: We want to replace this with a thumbnail showing
-        // the segmentation map on the image, but this is easier
-        // and better than what we have right now.
         altImageText = 'SEG';
+      } else if (displaySet.Modality && displaySet.Modality === 'SR') {
+        altImageText = 'SR';
       } else if (displaySet.images && displaySet.images.length) {
         const imageIndex = Math.floor(displaySet.images.length / 2);
         imageId = displaySet.images[imageIndex].getImageId();
+      } else if (displaySet.isSOPClassUIDSupported === false) {
+        altImageText = displaySet.SOPClassUIDNaturalized;
       } else {
         altImageText = displaySet.Modality ? displaySet.Modality : 'UN';
       }
 
-      const hasWarnings = _checkForSeriesInconsistencesWarnings(
+      const hasWarnings = _checkForSeriesInconsistencesWarnings(displaySet);
-        displaySet,
-        studies
-      );
 
       const hasDerivedDisplaySets = _checkForDerivedDisplaySets(
         displaySet,

platform/viewer/src/connectedComponents/ViewerMain.js

@@ -145,22 +145,42 @@ class ViewerMain extends Component {
       const { Modality } = displaySet;
       if (Modality === 'SEG' && servicesManager) {
         const onDisplaySetLoadFailureHandler = error => {
-          LoggerService.error({ error, message: error.message });
+          const message =
+            error.message.includes('orthogonal') ||
+            error.message.includes('oblique')
+              ? 'The segmentation has been detected as non coplanar,\
+              If you really think it is coplanar,\
+              please adjust the tolerance in the segmentation panel settings (at your own peril!)'
+              : error.message;
+          LoggerService.error({ error, message });
           UINotificationService.show({
             title: 'DICOM Segmentation Loader',
-            message: error.message,
+            message,
             type: 'error',
-            autoClose: true,
+            autoClose: false,
           });
         };
 
-        const { referencedDisplaySet } = displaySet.getSourceDisplaySet(
+        const {
+          referencedDisplaySet,
+          activatedLabelmapPromise,
+        } = displaySet.getSourceDisplaySet(
           this.props.studies,
           true,
           onDisplaySetLoadFailureHandler
         );
         displaySet = referencedDisplaySet;
-      } else {
+
+        activatedLabelmapPromise.then(activatedLabelmapIndex => {
+          const selectionFired = new CustomEvent(
+            'extensiondicomsegmentationsegselected',
+            {
+              detail: { activatedLabelmapIndex: activatedLabelmapIndex },
+            }
+          );
+          document.dispatchEvent(selectionFired);
+        });
+      } else if (Modality !== 'SR') {
         displaySet = displaySet.getSourceDisplaySet(this.props.studies);
       }
 
@@ -177,7 +197,7 @@ class ViewerMain extends Component {
       }
     }
 
-    if (displaySet.isModalitySupported === false) {
+    if (displaySet.isSOPClassUIDSupported === false) {
       const error = new Error('Modality not supported');
       const message = 'Modality not supported';
       LoggerService.error({ error, message });

platform/viewer/src/googleCloud/DicomStorePickerModal.js

@@ -36,7 +36,7 @@ function DicomStorePickerModal({
           user,
           url,
         },
-        onClose
+        onClose,
       });
     }
   };

runtime.txt

@@ -1 +1 @@
-3.7
+3.8