chore(release): publish [skip ci]

- @ohif/extension-dicom-segmentation@0.2.4
 - @ohif/viewer@3.11.7

extensions/dicom-segmentation/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.2.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.3...@ohif/extension-dicom-segmentation@0.2.4) (2020-05-04)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
 ## [0.2.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.2.2...@ohif/extension-dicom-segmentation@0.2.3) (2020-05-04)
 
 

extensions/dicom-segmentation/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-segmentation",
-  "version": "0.2.3",
+  "version": "0.2.4",
   "description": "OHIF extension for viewing segmentations in the 2D MPR view",
   "author": "OHIF",
   "license": "MIT",

extensions/dicom-segmentation/src/loadSegmentation.js

@@ -49,6 +49,7 @@ export default async function loadSegmentation(
 
     // TODO: Could define a color LUT based on colors in the SEG.
     const labelmapIndex = _getNextLabelmapIndex(imageIds[0]);
+    const colorLUTIndex = _makeColorLUTAndGetIndex(segMetadata);
 
     setters.labelmap3DByFirstImageId(
       imageIds[0],
@@ -56,7 +57,8 @@ export default async function loadSegmentation(
       labelmapIndex,
       segMetadata,
       imageIds.length,
-      segmentsOnFrame
+      segmentsOnFrame,
+      colorLUTIndex
     );
 
     segDisplaySet.labelmapIndex = labelmapIndex;
@@ -86,6 +88,69 @@ function _getNextLabelmapIndex(firstImageId) {
   return labelmapIndex;
 }
 
+function _makeColorLUTAndGetIndex(segMetadata) {
+  const { setters, state } = cornerstoneTools.getModule('segmentation');
+  const { colorLutTables } = state;
+  const colorLUTIndex = _getNextColorLUTIndex();
+
+  const { data } = segMetadata;
+
+  if (
+    !data.some(
+      segment =>
+        segment &&
+        (segment.ROIDisplayColor || segment.RecommendedDisplayCIELabValue)
+    )
+  ) {
+    // Use default cornerstoneTools colorLUT.
+    return 0;
+  }
+
+  const colorLUT = [];
+
+  for (let i = 0; i < data.length; i++) {
+    const segment = data[i];
+    if (!segment) {
+      continue;
+    }
+
+    const { ROIDisplayColor, RecommendedDisplayCIELabValue } = segment;
+
+    if (RecommendedDisplayCIELabValue) {
+      const rgb = dcmjs.data.Colors.dicomlab2RGB(
+        RecommendedDisplayCIELabValue
+      ).map(x => Math.round(x * 255));
+
+      colorLUT[i] = [...rgb, 255];
+    } else if (ROIDisplayColor) {
+      colorLUT[i] = [...ROIDisplayColor, 255];
+    } else {
+      colorLUT[i] = [...colorLutTables[0][i]];
+    }
+  }
+
+  colorLUT.shift();
+  setters.colorLUT(colorLUTIndex, colorLUT);
+
+  return colorLUTIndex;
+}
+
+function _getNextColorLUTIndex() {
+  const { state } = cornerstoneTools.getModule('segmentation');
+  const { colorLutTables } = state;
+
+  let colorLUTIndex = colorLutTables.length;
+
+  for (let i = 0; i < colorLutTables.length; i++) {
+    if (!colorLutTables[i]) {
+      colorLUTIndex = i;
+      break;
+    }
+  }
+
+  return colorLUTIndex;
+}
+
 function _parseSeg(arrayBuffer, imageIds) {
   return dcmjs.adapters.Cornerstone.Segmentation.generateToolState(
     imageIds,

platform/viewer/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [3.11.7](https://github.com/OHIF/Viewers/compare/@ohif/viewer@3.11.6...@ohif/viewer@3.11.7) (2020-05-04)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
 ## [3.11.6](https://github.com/OHIF/Viewers/compare/@ohif/viewer@3.11.5...@ohif/viewer@3.11.6) (2020-05-04)
 
 

platform/viewer/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/viewer",
-  "version": "3.11.6",
+  "version": "3.11.7",
   "description": "OHIF Viewer",
   "author": "OHIF Contributors",
   "license": "MIT",
@@ -55,7 +55,7 @@
     "@ohif/extension-dicom-p10-downloader": "^0.1.0",
     "@ohif/extension-dicom-pdf": "^1.0.3",
     "@ohif/extension-dicom-rt": "^0.1.2",
-    "@ohif/extension-dicom-segmentation": "^0.2.3",
+    "@ohif/extension-dicom-segmentation": "^0.2.4",
     "@ohif/extension-lesion-tracker": "^0.2.0",
     "@ohif/extension-vtk": "^1.5.3",
     "@ohif/i18n": "^0.52.8",