chore(release): publish [skip ci]

- @ohif/extension-dicom-rt@0.2.7 - @ohif/extension-dicom-segmentation@0.3.4 - @ohif/extension-vtk@1.6.10 - @ohif/core@2.9.14 - @ohif/viewer@4.2.16
[IDC-1670] Better display of derived datasets in side panel. (#1962 )
2020-08-10 09:21:53 +00:00 · 2020-08-10 11:20:31 +02:00 · 2020-08-05 09:48:08 +00:00 · 2020-08-05 11:46:42 +02:00 · 2020-08-05 09:03:27 +00:00 · 2020-08-05 11:00:47 +02:00
68 changed files with 1255 additions and 391 deletions
@@ -21,6 +21,19 @@ mv platform/viewer/dist/* .netlify/www/pwa -v
 # Build && Move script output
 # yarn run build:package

+# Build && Move Docz Output
+# Using local yarn install to prevent Gatsby from needing to access
+# node_modules above the platform/ui folder
+cd platform/ui
+yarn install
+yarn run build
+cd ../..
+mkdir -p ./.netlify/www/ui
+mv platform/ui/.docz/dist/* .netlify/www/ui -v
+
+# Cache all of the node_module dependencies in
+# extensions, modules, and platform packages
+yarn run lerna:cache
 echo 'Nothing left to see here. Go home, folks.'

 # Build using react-scripts
@@ -122,7 +122,7 @@ window.config = {
 ```

 - Install the viewer:
-  `window.OHIFStandaloneViewer.installViewer(window.config);`
+  `window.OHIFViewer.installViewer(window.config);`

 This exact setup is demonstrated in this
 [CodeSandbox](https://codesandbox.io/s/viewer-script-tag-tprch) and in our
@@ -3,6 +3,33 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.

+## [2.8.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.8.4...@ohif/extension-cornerstone@2.8.5) (2020-08-05)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
+## [2.8.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.8.3...@ohif/extension-cornerstone@2.8.4) (2020-07-13)
+
+
+### Bug Fixes
+
+* 🐛 - Put guards in all places that a cornerstone re-render ([#1899](https://github.com/OHIF/Viewers/issues/1899)) ([451f7ea](https://github.com/OHIF/Viewers/commit/451f7eab9258e7a193eb362e0926b13aedc4b3c9))
+
+
+
+
+
+## [2.8.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.8.2...@ohif/extension-cornerstone@2.8.3) (2020-07-13)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
 ## [2.8.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.8.1...@ohif/extension-cornerstone@2.8.2) (2020-06-15)


@@ -1,6 +1,6 @@
 {
  "name": "@ohif/extension-cornerstone",
-  "version": "2.8.2",
+  "version": "2.8.5",
  "description": "OHIF extension for Cornerstone",
  "author": "OHIF",
  "license": "MIT",
@@ -36,7 +36,7 @@
    "cornerstone-math": "^0.1.8",
    "cornerstone-tools": "4.15.1",
    "cornerstone-wado-image-loader": "^3.1.0",
-    "dcmjs": "0.13.0",
+    "dcmjs": "0.16.0",
    "dicom-parser": "^1.8.3",
    "hammerjs": "^2.0.8",
    "prop-types": "^15.6.2",
@@ -51,6 +51,6 @@
    "classnames": "^2.2.6",
    "lodash.merge": "^4.6.2",
    "lodash.throttle": "^4.1.1",
-    "react-cornerstone-viewport": "2.3.9"
+    "react-cornerstone-viewport": "4.0.1"
  }
 }
@@ -10,6 +10,14 @@ const scroll = cornerstoneTools.import('util/scroll');
 const { studyMetadataManager } = OHIF.utils;
 const { setViewportSpecificData } = OHIF.redux.actions;

+const refreshCornerstoneViewports = () => {
+  cornerstone.getEnabledElements().forEach(enabledElement => {
+    if (enabledElement.image) {
+      cornerstone.updateImage(enabledElement.element);
+    }
+  });
+};
+
 const commandsModule = ({ servicesManager }) => {
  const actions = {
    rotateViewport: ({ viewports, rotation }) => {
@@ -180,10 +188,7 @@ const commandsModule = ({ servicesManager }) => {

      measurementApi.syncMeasurementsAndToolData();

-      // Update images in all active viewports
-      cornerstone.getEnabledElements().forEach(enabledElement => {
-        cornerstone.updateImage(enabledElement.element);
-      });
+      refreshCornerstoneViewports();
    },
    getNearbyToolData({ element, canvasCoordinates, availableToolTypes }) {
      const nearbyTool = {};
@@ -262,23 +267,26 @@ const commandsModule = ({ servicesManager }) => {
      StudyInstanceUID,
      SOPInstanceUID,
      frameIndex,
-      activeViewportIndex
+      activeViewportIndex,
    }) => {
      const study = studyMetadataManager.get(StudyInstanceUID);

      const displaySet = study.findDisplaySet(ds => {
-        return ds.images && ds.images.find(i => i.getSOPInstanceUID() === SOPInstanceUID)
+        return (
+          ds.images &&
+          ds.images.find(i => i.getSOPInstanceUID() === SOPInstanceUID)
+        );
      });

      displaySet.SOPInstanceUID = SOPInstanceUID;
      displaySet.frameIndex = frameIndex;

-      window.store.dispatch(setViewportSpecificData(activeViewportIndex, displaySet));
+      window.store.dispatch(
+        setViewportSpecificData(activeViewportIndex, displaySet)
+      );

-      cornerstone.getEnabledElements().forEach(enabledElement => {
-        cornerstone.updateImage(enabledElement.element);
-      });
-    }
+      refreshCornerstoneViewports();
+    },
  };

  const definitions = {
@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.

+## [1.2.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.2.3...@ohif/extension-dicom-html@1.2.4) (2020-07-13)
+
+**Note:** Version bump only for package @ohif/extension-dicom-html
+
+
+
+
+
 ## [1.2.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.2.2...@ohif/extension-dicom-html@1.2.3) (2020-06-15)


@@ -1,6 +1,6 @@
 {
  "name": "@ohif/extension-dicom-html",
-  "version": "1.2.3",
+  "version": "1.2.4",
  "description": "OHIF extension for rendering structured reports to HTML",
  "author": "OHIF",
  "license": "MIT",
@@ -29,7 +29,7 @@
  },
  "peerDependencies": {
    "@ohif/core": "^0.50.0",
-    "dcmjs": "0.13.0",
+    "dcmjs": "0.16.0",
    "prop-types": "^15.6.2",
    "react": "^16.8.6",
    "react-dom": "^16.8.6"
@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.

+## [0.1.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-p10-downloader@0.1.1...@ohif/extension-dicom-p10-downloader@0.1.2) (2020-06-18)
+
+**Note:** Version bump only for package @ohif/extension-dicom-p10-downloader
+
+
+
+
+
 ## [0.1.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-p10-downloader@0.1.0...@ohif/extension-dicom-p10-downloader@0.1.1) (2020-06-04)

 **Note:** Version bump only for package @ohif/extension-dicom-p10-downloader
@@ -1,6 +1,6 @@
 {
  "name": "@ohif/extension-dicom-p10-downloader",
-  "version": "0.1.1",
+  "version": "0.1.2",
  "description": "OHIF extension for downloading DICOM P10 files",
  "author": "OHIF",
  "license": "MIT",
@@ -1,17 +1,16 @@
 import OHIF from '@ohif/core';
 import {
  save,
+  upload,
  getDicomWebClientFromContext,
  getStudyInstanceUIDFromStudies,
  getSOPInstanceReferenceFromActiveViewport,
  getSOPInstanceReferencesFromViewports,
 } from './utils';
-import _downloadAndZip from './downloadAndZip';
+import _downloadAndZip, { downloadInstances } from './downloadAndZip';

 const {
-  utils: {
-    Queue,
-  },
+  utils: { Queue },
 } = OHIF;

 export function getCommands(context) {
@@ -66,6 +65,28 @@ export function getCommands(context) {
        listOfUIDs
      );
    },
+    downloadAndUploadStudy({ servers, studies, progress, serverConfig }) {
+      const dicomWebClient = getDicomWebClientFromContext(context, servers);
+      const listOfUIDs = getStudyInstanceUIDFromStudies(studies);
+      return upload(
+        downloadInstances(dicomWebClient, listOfUIDs, { progress }),
+        /**
+         * serverConfig is an object with the values used to create a new
+         * instance of DICOMwebClient.
+         *
+         * Basic Structure:
+         *
+         * const config = {
+         *    url,
+         *    headers,
+         *    errorInterceptor
+         * }
+         *
+         * const dicomWeb = new api.DICOMwebClient(config);
+         */
+        serverConfig
+      );
+    },
  };

  const definitions = {
@@ -91,6 +112,11 @@ export function getCommands(context) {
      storeContexts: ['servers', 'viewports'],
      options: { progress },
    },
+    downloadAndUploadStudy: {
+      commandFn: queue.bindSafe(actions.downloadAndUploadStudy, error),
+      storeContexts: ['servers', 'studies'],
+      options: { progress },
+    },
  };

  return {
@@ -79,13 +79,7 @@ async function downloadAndZip(dicomWebClient, listOfUIDs, options) {
  if (dicomWebClient instanceof api.DICOMwebClient) {
    const settings = buildSettings(listOfUIDs, options);
    const { compression } = settings.tasks;
-    // Register user-provided progress handler as a task list observer
-    progressUtils.addObserver(settings.taskList, settings.options.progress);
-    const buffers = await downloadAll(dicomWebClient, settings).catch(error => {
-      // Reject promise from compression task on download failure
-      compression.deferred.reject(error);
-      throw error;
-    });
+    const buffers = await downloadBuffers(settings, dicomWebClient);
    compression.deferred.resolve(zipAll(buffers, settings));
    const url = await compression.deferred.promise;
    return url;
@@ -93,6 +87,27 @@ async function downloadAndZip(dicomWebClient, listOfUIDs, options) {
  throw new Error('A valid DICOM Web Client instance is expected');
 }

+async function downloadInstances(dicomWebClient, listOfUIDs, options) {
+  if (dicomWebClient instanceof api.DICOMwebClient) {
+    const settings = buildSettings(listOfUIDs, options);
+    const buffers = await downloadBuffers(settings, dicomWebClient);
+    return buffers;
+  }
+  throw new Error('A valid DICOM Web Client instance is expected');
+}
+
+async function downloadBuffers(settings, dicomWebClient) {
+  const { compression } = settings.tasks;
+  // Register user-provided progress handler as a task list observer
+  progressUtils.addObserver(settings.taskList, settings.options.progress);
+  const buffers = await downloadAll(dicomWebClient, settings).catch(error => {
+    // Reject promise from compression task on download failure
+    compression.deferred.reject(error);
+    throw error;
+  });
+  return buffers;
+}
+
 /**
 * Utils
 */
@@ -241,4 +256,4 @@ async function download(
 * Exports
 */

-export { downloadAndZip as default, downloadAndZip };
+export { downloadAndZip as default, downloadAndZip, downloadInstances };
@@ -100,12 +100,55 @@ function save(promise, listOfUIDs) {
    });
 }

+function upload(promise, serverConfig) {
+  return Promise.resolve(promise)
+    .then(async instances => {
+      const instancesAmount = instances.length;
+      OHIF.log.info(`Uploading study to ${serverConfig.url}`);
+      OHIF.log.info(
+        `${instancesAmount} instances are being uploaded. Don't close your browser.`
+      );
+
+      try {
+        const dicomWeb = new api.DICOMwebClient(serverConfig);
+        let progress = 0;
+
+        const getProgress = () => {
+          return ((progress * 100) / instancesAmount).toFixed();
+        };
+
+        for (const instance of instances) {
+          const options = {
+            datasets: [instance],
+          };
+
+          await dicomWeb.storeInstances(options);
+
+          progress++;
+
+          OHIF.log.info(`Progress: ${getProgress()}%`);
+        }
+
+        OHIF.log.info('Successfully uploaded!');
+      } catch (error) {
+        OHIF.log.error(`Failed to upload: ${error}`);
+      }
+
+      return instances;
+    })
+    .catch(error => {
+      OHIF.log.error(`Failed to upload: ${error}`);
+      return null;
+    });
+}
+
 function getStudyInstanceUIDFromStudies(studies) {
  return Object.keys(Object(Object(studies).studyData)).slice(0, 1);
 }

 export {
  save,
+  upload,
  validDicomUid,
  getDicomWebClientFromConfig,
  getDicomWebClientFromContext,
@@ -3,6 +3,60 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.

+## [0.2.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.6...@ohif/extension-dicom-rt@0.2.7) (2020-08-10)
+
+**Note:** Version bump only for package @ohif/extension-dicom-rt
+
+
+
+
+
+## [0.2.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.5...@ohif/extension-dicom-rt@0.2.6) (2020-08-05)
+
+**Note:** Version bump only for package @ohif/extension-dicom-rt
+
+
+
+
+
+## [0.2.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.4...@ohif/extension-dicom-rt@0.2.5) (2020-07-13)
+
+
+### Bug Fixes
+
+* 🐛 - Put guards in all places that a cornerstone re-render ([#1899](https://github.com/OHIF/Viewers/issues/1899)) ([451f7ea](https://github.com/OHIF/Viewers/commit/451f7eab9258e7a193eb362e0926b13aedc4b3c9))
+
+
+
+
+
+## [0.2.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.3...@ohif/extension-dicom-rt@0.2.4) (2020-07-13)
+
+**Note:** Version bump only for package @ohif/extension-dicom-rt
+
+
+
+
+
+## [0.2.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.2...@ohif/extension-dicom-rt@0.2.3) (2020-07-13)
+
+**Note:** Version bump only for package @ohif/extension-dicom-rt
+
+
+
+
+
+## [0.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.1...@ohif/extension-dicom-rt@0.2.2) (2020-07-13)
+
+
+### Bug Fixes
+
+* 🐛 Fix RT Panel hide/show and Fix looping load errors ([#1877](https://github.com/OHIF/Viewers/issues/1877)) ([e7cc735](https://github.com/OHIF/Viewers/commit/e7cc735c03d02eeb0d3af4ba02c15ed4f81bbec2))
+
+
+
+
+
 ## [0.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.2.0...@ohif/extension-dicom-rt@0.2.1) (2020-06-15)


@@ -1,6 +1,6 @@
 {
  "name": "@ohif/extension-dicom-rt",
-  "version": "0.2.1",
+  "version": "0.2.7",
  "description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
  "author": "OHIF",
  "license": "MIT",
@@ -31,7 +31,7 @@
    "@ohif/core": "^0.50.0",
    "cornerstone-core": "^2.2.8",
    "cornerstone-tools": "4.15.1",
-    "dcmjs": "0.13.0",
+    "dcmjs": "0.16.0",
    "prop-types": "^15.6.2",
    "react": "^16.8.6",
    "react-dom": "^16.8.6"
@@ -1,5 +1,6 @@
 import { MODULE_TYPES, utils, DICOMWeb } from '@ohif/core';
 import loadRTStruct from './loadRTStruct';
+import getSourceDisplaySet from './getSourceDisplaySet';

 import id from './id';

@@ -14,7 +15,7 @@ const OHIFDicomRTStructSopClassHandler = {
  id: 'OHIFDicomRTStructSopClassHandler',
  type: MODULE_TYPES.SOP_CLASS_HANDLER,
  sopClassUIDs,
-  getDisplaySetFromSeries: function (
+  getDisplaySetFromSeries: function(
    series,
    study,
    dicomWebClient,
@@ -67,13 +68,18 @@ const OHIFDicomRTStructSopClassHandler = {
      }
    }

-    rtStructDisplaySet.load = function (referencedDisplaySet, studies) {
+    rtStructDisplaySet.getSourceDisplaySet = function(studies) {
+      return getSourceDisplaySet(studies, rtStructDisplaySet);
+    };
+
+    rtStructDisplaySet.load = function(referencedDisplaySet, studies) {
      return loadRTStruct(
        rtStructDisplaySet,
        referencedDisplaySet,
        studies
      ).catch(error => {
        rtStructDisplaySet.isLoaded = false;
+        rtStructDisplaySet.loadError = true;
        throw new Error(error);
      });
    };
@@ -17,7 +17,9 @@ const { studyMetadataManager } = utils;

 const refreshViewport = () => {
  cornerstone.getEnabledElements().forEach(enabledElement => {
-    cornerstone.updateImage(enabledElement.element);
+    if (enabledElement.image) {
+      cornerstone.updateImage(enabledElement.element);
+    }
  });
 };

@@ -38,7 +40,7 @@ const RTPanel = ({
  isOpen,
  onContourItemClick,
  activeContexts = [],
-  contexts = {}
+  contexts = {},
 }) => {
  const isVTK = () => activeContexts.includes(contexts.VTK);
  const isCornerstone = () => activeContexts.includes(contexts.CORNERSTONE);
@@ -76,7 +78,10 @@ const RTPanel = ({
    document.addEventListener('extensiondicomrtrtloaded', updateStructureSets);

    return () => {
-      document.removeEventListener('extensiondicomrtrtloaded', updateStructureSets);
+      document.removeEventListener(
+        'extensiondicomrtrtloaded',
+        updateStructureSets
+      );
    };
  }, []);

@@ -89,7 +94,9 @@ const RTPanel = ({
        activeViewport.SeriesInstanceUID
      );

-      const studyMetadata = studyMetadataManager.get(activeViewport.StudyInstanceUID);
+      const studyMetadata = studyMetadataManager.get(
+        activeViewport.StudyInstanceUID
+      );
      const referencedDisplaysets = studyMetadata.getDerivedDatasets({
        referencedSeriesInstanceUID: activeViewport.SeriesInstanceUID,
        Modality: 'RTSTRUCT',
@@ -100,7 +107,7 @@ const RTPanel = ({
        setState({
          referencedDisplaysets,
          selectedSet: defaultSet,
-          sets: viewportSets
+          sets: viewportSets,
        });
      } else {
        setState(DEFAULT_STATE);
@@ -116,7 +123,10 @@ const RTPanel = ({
    setShowSettings(showSettings && !isOpen);
  }, [isOpen]);

-  const toContourItem = ({ ROINumber, ROIName, RTROIObservations, colorArray, visible }, loadedSet) => {
+  const toContourItem = (
+    { ROINumber, ROIName, RTROIObservations, colorArray, visible, isSupported },
+    loadedSet
+  ) => {
    let interpretedType = '';
    if (RTROIObservations && RTROIObservations.RTROIInterpretedType) {
      interpretedType = `(${RTROIObservations.RTROIInterpretedType})`;
@@ -127,6 +137,7 @@ const RTPanel = ({
      <StructureSetItem
        key={ROINumber}
        selected={isSameContour}
+        isDisabled={!isSupported}
        onClick={() => {
          setSelectedContour(isSameContour ? null : ROINumber);

@@ -149,14 +160,20 @@ const RTPanel = ({
            );

            const frameIndex = imageIds.indexOf(imageId);
-            const SOPInstanceUID = cornerstone.metaData.get('SOPInstanceUID', imageId);
-            const StudyInstanceUID = cornerstone.metaData.get('StudyInstanceUID', imageId);
+            const SOPInstanceUID = cornerstone.metaData.get(
+              'SOPInstanceUID',
+              imageId
+            );
+            const StudyInstanceUID = cornerstone.metaData.get(
+              'StudyInstanceUID',
+              imageId
+            );

            onContourItemClick({
              StudyInstanceUID,
              SOPInstanceUID,
              frameIndex,
-              activeViewportIndex: activeIndex
+              activeViewportIndex: activeIndex,
            });
          }
        }}
@@ -166,7 +183,10 @@ const RTPanel = ({
        visible={visible}
        onVisibilityChange={() => {
          const module = cornerstoneTools.getModule('rtstruct');
-          module.setters.toggleROIContour(state.selectedSet.SeriesInstanceUID, ROINumber);
+          module.setters.toggleROIContour(
+            state.selectedSet.SeriesInstanceUID,
+            ROINumber
+          );
        }}
      />
    );
@@ -202,49 +222,70 @@ const RTPanel = ({
          onClick={() => setShowSettings(true)}
        />
      </div>
-      {!state.referencedDisplaysets.length && <LoadingIndicator expand height="70px" width="70px" />}
-      {state.sets && state.referencedDisplaysets.map(displaySet => {
-        const { SeriesInstanceUID, metadata, isLoaded } = displaySet;
+      {!state.referencedDisplaysets.length && (
+        <LoadingIndicator expand height="70px" width="70px" />
+      )}
+      {state.sets &&
+        state.referencedDisplaysets.map(displaySet => {
+          const { SeriesInstanceUID, metadata, isLoaded } = displaySet;

-        const module = cornerstoneTools.getModule('rtstruct');
-        const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(viewports[activeIndex].SeriesInstanceUID);
+          const module = cornerstoneTools.getModule('rtstruct');
+          const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(
+            viewports[activeIndex].SeriesInstanceUID
+          );

-        const loadedSet = sets.find(set => set.SeriesInstanceUID === SeriesInstanceUID);
-        return (
-          <PanelSection
-            key={SeriesInstanceUID}
-            title={metadata.StructureSetLabel}
-            loading={!isLoaded || !loadedSet}
-            visible={isLoaded && loadedSet.visible}
-            hideVisibleButton={!isLoaded}
-            expanded={isLoaded && loadedSet.SeriesInstanceUID === state.selectedSet.SeriesInstanceUID}
-            onVisibilityChange={newVisibility => {
-              const module = cornerstoneTools.getModule('rtstruct');
-              loadedSet.ROIContours.forEach(({ ROINumber }) => {
-                module.setters.toggleROIContour(loadedSet.SeriesInstanceUID, ROINumber);
-              });
-              const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(viewports[activeIndex].SeriesInstanceUID);
-              setState(state => ({ ...state, sets }));
-              refreshViewport();
-            }}
-            onExpandChange={async () => {
-              if (!isLoaded) {
-                await displaySet.load(viewports[activeIndex], studies);
-                const module = cornerstoneTools.getModule('rtstruct');
-                const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(viewports[activeIndex].SeriesInstanceUID);
-                const selectedSet = sets.find(set => set.SeriesInstanceUID === SeriesInstanceUID);
-                setState(state => ({ ...state, selectedSet, sets }));
+          const loadedSet = sets.find(
+            set => set.SeriesInstanceUID === SeriesInstanceUID
+          );
+          return (
+            <PanelSection
+              key={SeriesInstanceUID}
+              title={metadata.StructureSetLabel}
+              loading={!isLoaded || !loadedSet}
+              visible={isLoaded && loadedSet && loadedSet.visible}
+              hideVisibleButton={!isLoaded}
+              expanded={
+                isLoaded &&
+                loadedSet.SeriesInstanceUID ===
+                  state.selectedSet.SeriesInstanceUID
              }
-            }}
-          >
-            <ScrollableArea>
-              <TableList headless>
-                {isLoaded && loadedSet.ROIContours.map(c => toContourItem(c, loadedSet))}
-              </TableList>
-            </ScrollableArea>
-          </PanelSection>
-        );
-      })}
+              onVisibilityChange={newVisibility => {
+                const module = cornerstoneTools.getModule('rtstruct');
+
+                if (newVisibility) {
+                  module.setters.showStructureSet(loadedSet.SeriesInstanceUID);
+                } else {
+                  module.setters.hideStructureSet(loadedSet.SeriesInstanceUID);
+                }
+                const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(
+                  viewports[activeIndex].SeriesInstanceUID
+                );
+                setState(state => ({ ...state, sets }));
+                refreshViewport();
+              }}
+              onExpandChange={async () => {
+                if (!isLoaded) {
+                  await displaySet.load(viewports[activeIndex], studies);
+                  const module = cornerstoneTools.getModule('rtstruct');
+                  const sets = module.getters.structuresSetsWhichReferenceSeriesInstanceUid(
+                    viewports[activeIndex].SeriesInstanceUID
+                  );
+                  const selectedSet = sets.find(
+                    set => set.SeriesInstanceUID === SeriesInstanceUID
+                  );
+                  setState(state => ({ ...state, selectedSet, sets }));
+                }
+              }}
+            >
+              <ScrollableArea>
+                <TableList headless>
+                  {isLoaded &&
+                    loadedSet.ROIContours.map(c => toContourItem(c, loadedSet))}
+                </TableList>
+              </ScrollableArea>
+            </PanelSection>
+          );
+        })}
    </div>
  );
 };
@@ -22,11 +22,6 @@
  width: 100%;
 }

-.dcmrt-structure-set-item.selected .item-actions {
-  height: 35px;
-  visibility: visible;
-}
-
 .dcmrt-structure-set-item .item-actions {
  margin-left: -1px;
  background-color: var(--ui-gray-darker);
@@ -47,7 +42,8 @@
  transition: all 0.3s ease;
 }

-.dcmrt-structure-set-item .item-actions .btnAction:hover, .dcmrt-structure-set-item .item-actions .btnAction:active {
+.dcmrt-structure-set-item .item-actions .btnAction:hover,
+.dcmrt-structure-set-item .item-actions .btnAction:active {
  color: var(--text-primary-color);
 }

@@ -86,3 +82,12 @@
 .dcmrt-structure-set-item .item-label .eye-icon.--visible {
  color: var(--default-color);
 }
+
+.dcmrt-structure-set-item.isDisabled .item-color-section {
+  background-color: #e29e4a;
+  color: #fff;
+}
+
+.dcmrt-structure-set-item.isDisabled .item-label {
+  color: var(--text-disabled-color);
+}
@@ -1,6 +1,6 @@
 import React, { useState, useEffect } from 'react';
 import PropTypes from 'prop-types';
-import { TableListItem, Icon } from '@ohif/ui';
+import { TableListItem, Icon, Tooltip, OverlayTrigger } from '@ohif/ui';

 import './StructureSetItem.css';

@@ -20,6 +20,7 @@ ColoredCircle.propTypes = {
 const StructureSetItem = ({
  index,
  label,
+  isDisabled,
  onClick,
  itemClass,
  color,
@@ -31,22 +32,44 @@ const StructureSetItem = ({

  useEffect(() => {
    setIsVisible(visible);
-  }, [visible])
+  }, [visible]);

-  return (
-    <div className={`dcmrt-structure-set-item ${selected && 'selected'}`}>
-      <TableListItem
-        key={index}
-        itemKey={index}
-        itemIndex={index}
-        itemClass={itemClass}
-        itemMeta={<ColoredCircle color={color} />}
-        itemMetaClass="item-color-section"
-        onItemClick={onClick}
-      >
-        <div>
-          <div className="item-label" style={{ marginBottom: 4 }}>
-            <span>{label}</span>
+  let dcmrtClassNames = `dcmrt-structure-set-item`;
+
+  if (selected) {
+    dcmrtClassNames += ' selected';
+  }
+
+  if (isDisabled) {
+    dcmrtClassNames += ' isDisabled';
+  }
+
+  const warningIcon = (
+    <span>
+      <Icon name="exclamation-triangle" />
+    </span>
+  );
+
+  const tableListItem = (
+    <TableListItem
+      key={index}
+      itemKey={index}
+      itemIndex={index}
+      itemClass={itemClass}
+      itemMeta={isDisabled ? warningIcon : <ColoredCircle color={color} />}
+      itemMetaClass="item-color-section"
+      onItemClick={() => {
+        if (isDisabled) {
+          return;
+        }
+
+        onClick();
+      }}
+    >
+      <div>
+        <div className="item-label" style={{ marginBottom: 4 }}>
+          <span>{label}</span>
+          {!isDisabled && (
            <Icon
              className={`eye-icon ${isVisible && '--visible'}`}
              name={isVisible ? 'eye' : 'eye-closed'}
@@ -54,37 +77,72 @@ const StructureSetItem = ({
              height="20px"
              onClick={event => {
                event.stopPropagation();
+
+                if (isDisabled) {
+                  return;
+                }
+
                const newVisibility = !isVisible;
                setIsVisible(newVisibility);
                onVisibilityChange(newVisibility);
              }}
            />
-          </div>
-          {false && <div className="item-info">{'...'}</div>}
-          {false && (
-            <div className="item-actions">
-              <button
-                className="btnAction"
-                onClick={() => console.log('Relabelling...')}
-              >
-                <span style={{ marginRight: '4px' }}>
-                  <Icon name="edit" width="14px" height="14px" />
-                </span>
-                Relabel
-              </button>
-              <button
-                className="btnAction"
-                onClick={() => console.log('Editing description...')}
-              >
-                <span style={{ marginRight: '4px' }}>
-                  <Icon name="edit" width="14px" height="14px" />
-                </span>
-                Description
-              </button>
-            </div>
          )}
        </div>
-      </TableListItem>
+
+        {false && <div className="item-info">{'...'}</div>}
+        {false && (
+          <div className="item-actions">
+            <button
+              className="btnAction"
+              onClick={() => console.log('Relabelling...')}
+            >
+              <span style={{ marginRight: '4px' }}>
+                <Icon name="edit" width="14px" height="14px" />
+              </span>
+              Relabel
+            </button>
+            <button
+              className="btnAction"
+              onClick={() => console.log('Editing description...')}
+            >
+              <span style={{ marginRight: '4px' }}>
+                <Icon name="edit" width="14px" height="14px" />
+              </span>
+              Description
+            </button>
+          </div>
+        )}
+      </div>
+    </TableListItem>
+  );
+
+  return (
+    <div className={dcmrtClassNames}>
+      <React.Fragment>
+        {isDisabled ? (
+          <OverlayTrigger
+            key={index}
+            placement="left"
+            overlay={
+              <Tooltip
+                placement="left"
+                className="in tooltip-warning"
+                id="tooltip-left"
+              >
+                <div className="warningTitle">Unsupported Region</div>
+                <div className="warningContent">
+                  Contour type currently unsupported.
+                </div>
+              </Tooltip>
+            }
+          >
+            <div>{tableListItem}</div>
+          </OverlayTrigger>
+        ) : (
+          <React.Fragment>{tableListItem} </React.Fragment>
+        )}
+      </React.Fragment>
    </div>
  );
 };
@@ -99,7 +157,7 @@ StructureSetItem.propTypes = {

 StructureSetItem.defaultProps = {
  itemClass: '',
-  onClick: () => { },
+  onClick: () => {},
 };

 export default StructureSetItem;
@@ -0,0 +1,38 @@
+export default function getSourceDisplaySet(studies, rtStructDisplaySet) {
+  const referencedDisplaySet = _getReferencedDisplaySet(
+    rtStructDisplaySet,
+    studies
+  );
+
+  rtStructDisplaySet.load(referencedDisplaySet, studies);
+
+  return referencedDisplaySet;
+}
+
+const _getReferencedDisplaySet = (rtStructDisplaySet, studies) => {
+  let allDisplaySets = [];
+
+  studies.forEach(study => {
+    allDisplaySets = allDisplaySets.concat(study.displaySets);
+  });
+
+  const otherDisplaySets = allDisplaySets.filter(
+    ds => ds.displaySetInstanceUID !== rtStructDisplaySet.displaySetInstanceUID
+  );
+
+  const ReferencedSeriesSequence = Array.isArray(
+    rtStructDisplaySet.metadata.ReferencedSeriesSequence
+  )
+    ? rtStructDisplaySet.metadata.ReferencedSeriesSequence
+    : [rtStructDisplaySet.metadata.ReferencedSeriesSequence];
+
+  const referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
+    ReferencedSeries => ReferencedSeries.SeriesInstanceUID
+  );
+
+  const referencedDisplaySet = otherDisplaySets.find(ds =>
+    referencedSeriesInstanceUIDs.includes(ds.SeriesInstanceUID)
+  );
+
+  return referencedDisplaySet;
+};
@@ -20,7 +20,7 @@ export default {
  preRegistration({ servicesManager, configuration = {} }) {
    init({ servicesManager, configuration });
  },
-  getPanelModule({ commandsManager, api }) {
+  getPanelModule({ commandsManager, servicesManager, api }) {
    const ExtendedRTPanel = props => {
      const { activeContexts } = api.hooks.useAppContext();

@@ -16,7 +16,6 @@ export default async function loadRTStruct(
  studies
 ) {
  const rtStructModule = cornerstoneTools.getModule('rtstruct');
-
  // Set here is loading is asynchronous.
  // If this function throws its set back to false.
  rtStructDisplaySet.isLoaded = true;
@@ -68,7 +67,6 @@ export default async function loadRTStruct(
  const rtStructDisplayToolName = TOOL_NAMES.RTSTRUCT_DISPLAY_TOOL;

  for (let i = 0; i < ROIContourSequence.length; i++) {
-
    const ROIContour = ROIContourSequence[i];
    const { ReferencedROINumber, ContourSequence } = ROIContour;

@@ -76,12 +74,7 @@ export default async function loadRTStruct(
      continue;
    }

-    _setROIContourMetadata(
-      structureSet,
-      StructureSetROISequence,
-      RTROIObservationsSequence,
-      ROIContour
-    );
+    const isSupported = false;

    for (let c = 0; c < ContourSequence.length; c++) {
      const {
@@ -93,10 +86,12 @@ export default async function loadRTStruct(

      if (ContourGeometricType !== 'CLOSED_PLANAR') {
        // TODO: Do we want to visualise types other than closed planar?
-        // We could easily do open planar.
+        // We could easily do open planar and point.
        continue;
      }

+      isSupported = true;
+
      const sopInstanceUID = ContourImageSequence.ReferencedSOPInstanceUID;
      const imageId = _getImageId(imageIdSopInstanceUidPairs, sopInstanceUID);
      const imageIdSpecificToolData = _getOrCreateImageIdSpecificToolData(
@@ -128,6 +123,14 @@ export default async function loadRTStruct(

      imageIdSpecificToolData.push(measurementData);
    }
+
+    _setROIContourMetadata(
+      structureSet,
+      StructureSetROISequence,
+      RTROIObservationsSequence,
+      ROIContour,
+      isSupported
+    );
  }

  _setToolEnabledIfNotEnabled(rtStructDisplayToolName);
@@ -157,7 +160,8 @@ function _setROIContourMetadata(
  structureSet,
  StructureSetROISequence,
  RTROIObservationsSequence,
-  ROIContour
+  ROIContour,
+  isSupported
 ) {
  const StructureSetROI = StructureSetROISequence.find(
    structureSetROI =>
@@ -169,6 +173,7 @@ function _setROIContourMetadata(
    ROIName: StructureSetROI.ROIName,
    ROIGenerationAlgorithm: StructureSetROI.ROIGenerationAlgorithm,
    ROIDescription: StructureSetROI.ROIDescription,
+    isSupported,
    visible: true,
  };

@@ -238,7 +243,7 @@ function _setROIContourRTROIObservations(

 function _setToolEnabledIfNotEnabled(toolName) {
  cornerstone.getEnabledElements().forEach(enabledElement => {
-    const { element } = enabledElement;
+    const { element, image } = enabledElement;
    const tool = cornerstoneTools.getToolForElement(element, toolName);

    if (tool.mode !== 'enabled') {
@@ -246,7 +251,9 @@ function _setToolEnabledIfNotEnabled(toolName) {
      cornerstoneTools.setToolEnabled(toolName);
    }

-    cornerstone.updateImage(element);
+    if (image) {
+      cornerstone.updateImage(element);
+    }
  });
 }

@@ -5,7 +5,9 @@ import structureSetReferencesSeriesInstanceUid from './lib/structureSetReference
 // We should put this as a helper somewhere as we are using it in mutliple places.
 function refreshViewport() {
  cornerstone.getEnabledElements().forEach(enabledElement => {
-    cornerstone.updateImage(enabledElement.element);
+    if (enabledElement.image) {
+      cornerstone.updateImage(enabledElement.element);
+    }
  });
 }

@@ -81,7 +83,9 @@ function _setStructureSetVisible(SeriesInstanceUID, visible = true) {
  const StructureSet = getStructureSet(SeriesInstanceUID);

  if (StructureSet) {
-    StructureSet.visible = visible;
+    StructureSet.ROIContours.forEach(ROIContour => {
+      ROIContour.visible = visible;
+    });

    refreshViewport();
  }
@@ -154,15 +158,10 @@ function setToggleROIContour(SeriesInstanceUID, ROINumber) {
 * Returns an array of StructureSets which reference the given SeriesInstanceUID.
 * @param {string} SeriesInstanceUID The SeriesInstanceUID to check.
 */
-function getStructuresSetsWhichReferenceSeriesInstanceUid(
-  SeriesInstanceUID
-) {
+function getStructuresSetsWhichReferenceSeriesInstanceUid(SeriesInstanceUID) {
  const { StructureSets } = state;
  return StructureSets.filter(StructureSet =>
-    structureSetReferencesSeriesInstanceUid(
-      StructureSet,
-      SeriesInstanceUID
-    )
+    structureSetReferencesSeriesInstanceUid(StructureSet, SeriesInstanceUID)
  );
 }

@@ -3,6 +3,33 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.

+## [0.3.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.3.3...@ohif/extension-dicom-segmentation@0.3.4) (2020-08-10)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
+## [0.3.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.3.2...@ohif/extension-dicom-segmentation@0.3.3) (2020-07-13)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
+## [0.3.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.3.1...@ohif/extension-dicom-segmentation@0.3.2) (2020-07-13)
+
+
+### Bug Fixes
+
+* 🐛 Fix RT Panel hide/show and Fix looping load errors ([#1877](https://github.com/OHIF/Viewers/issues/1877)) ([e7cc735](https://github.com/OHIF/Viewers/commit/e7cc735c03d02eeb0d3af4ba02c15ed4f81bbec2))
+
+
+
+
+
 ## [0.3.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.3.0...@ohif/extension-dicom-segmentation@0.3.1) (2020-06-15)


@@ -1,6 +1,6 @@
 {
  "name": "@ohif/extension-dicom-segmentation",
-  "version": "0.3.1",
+  "version": "0.3.4",
  "description": "OHIF extension for viewing segmentations in the 2D MPR view",
  "author": "OHIF",
  "license": "MIT",
@@ -31,7 +31,7 @@
    "@ohif/core": "^0.50.0",
    "cornerstone-core": "^2.2.8",
    "cornerstone-tools": "4.15.1",
-    "dcmjs": "0.13.0",
+    "dcmjs": "0.16.0",
    "prop-types": "^15.6.2",
    "react": "^16.8.6",
    "react-dom": "^16.8.6"
@@ -6,6 +6,9 @@ import moment from 'moment';
 import { utils, log } from '@ohif/core';
 import { ScrollableArea, TableList, Icon } from '@ohif/ui';

+import setActiveLabelmap from '../../utils/setActiveLabelMap';
+import refreshViewports from '../../utils/refreshViewports';
+
 import {
  BrushColorSelector,
  BrushRadius,
@@ -19,12 +22,6 @@ import SegmentationSettings from '../SegmentationSettings/SegmentationSettings';

 const { studyMetadataManager } = utils;

-const refreshViewport = () => {
-  cornerstone.getEnabledElements().forEach(enabledElement => {
-    cornerstone.updateImage(enabledElement.element);
-  });
-};
-
 /**
 * SegmentationPanel component
 *
@@ -68,8 +65,7 @@ const SegmentationPanel = ({
   */
  const [state, setState] = useState({
    brushRadius: DEFAULT_BRUSH_RADIUS,
-    brushColor:
-      'rgba(221, 85, 85, 1)',
+    brushColor: 'rgba(221, 85, 85, 1)',
    selectedSegment: null,
    selectedSegmentation: null,
    showSegmentationSettings: false,
@@ -78,7 +74,7 @@ const SegmentationPanel = ({
    segmentList: [],
    cachedSegmentsProperties: [],
    isLoading: false,
-    isDisabled: true
+    isDisabled: true,
  });

  useEffect(() => {
@@ -112,7 +108,10 @@ const SegmentationPanel = ({
     * allows us to easily watch the module or the segmentations loading process in any other component
     * without subscribing to external events.
     */
-    document.addEventListener('extensiondicomsegmentationsegloaded', refreshSegmentations);
+    document.addEventListener(
+      'extensiondicomsegmentationsegloaded',
+      refreshSegmentations
+    );

    /*
     * These are specific to each element;
@@ -127,7 +126,10 @@ const SegmentationPanel = ({
    );

    return () => {
-      document.removeEventListener('extensiondicomsegmentationsegloaded', refreshSegmentations);
+      document.removeEventListener(
+        'extensiondicomsegmentationsegloaded',
+        refreshSegmentations
+      );
      cornerstoneTools.store.state.enabledElements.forEach(enabledElement =>
        enabledElement.removeEventListener(
          'cornerstonetoolslabelmapmodified',
@@ -169,26 +171,29 @@ const SegmentationPanel = ({
          selectedSegmentation: brushStackState.activeLabelmapIndex,
          labelmapList,
          segmentList,
-          isDisabled
+          isDisabled,
        }));
      } else {
        setState(state => ({
          ...state,
          labelmapList: [],
          segmentList: [],
-          isDisabled
+          isDisabled,
        }));
      }
    }
-  }, [
-    viewports,
-    activeIndex,
-    state.isLoading
-  ]);
+  }, [viewports, activeIndex, state.isLoading]);

  useEffect(() => {
    refreshSegmentations();
-  }, [viewports, activeIndex, isOpen, state.selectedSegmentation, activeContexts, state.isLoading]);
+  }, [
+    viewports,
+    activeIndex,
+    isOpen,
+    state.selectedSegmentation,
+    activeContexts,
+    state.isLoading,
+  ]);

  /* Handle open/closed panel behaviour */
  useEffect(() => {
@@ -223,12 +228,10 @@ const SegmentationPanel = ({
          title: displayDescription,
          description: displayDate,
          onClick: async () => {
-            const activatedLabelmapIndex = await _setActiveLabelmap(
+            const activatedLabelmapIndex = await setActiveLabelmap(
              activeViewport,
              studies,
              displaySet,
-              firstImageId,
-              brushStackState.activeLabelmapIndex,
              () => onSelectedSegmentationChange(),
              onDisplaySetLoadFailure
            );
@@ -376,9 +379,13 @@ const SegmentationPanel = ({
          return !segmentsHidden[segmentIndex];
        };

-        const cachedSegmentProperties = state.cachedSegmentsProperties[segmentNumber];
+        const cachedSegmentProperties =
+          state.cachedSegmentsProperties[segmentNumber];
        let visible = isSegmentVisible();
-        if (cachedSegmentProperties && cachedSegmentProperties.visible !== visible) {
+        if (
+          cachedSegmentProperties &&
+          cachedSegmentProperties.visible !== visible
+        ) {
          toggleSegmentVisibility();
        }

@@ -406,8 +413,10 @@ const SegmentationPanel = ({
                onSegmentVisibilityChange(segmentNumber, newVisibility);
              }

-              updateCachedSegmentsProperties(segmentNumber, { visible: newVisibility });
-              refreshViewport();
+              updateCachedSegmentsProperties(segmentNumber, {
+                visible: newVisibility,
+              });
+              refreshViewports();
            }}
          />
        );
@@ -429,10 +438,9 @@ const SegmentationPanel = ({
    const segmentsProperties = state.cachedSegmentsProperties;
    const segmentProperties = state.cachedSegmentsProperties[segmentNumber];

-    segmentsProperties[segmentNumber] =
-      segmentProperties ?
-        { ...segmentProperties, ...properties } :
-        properties;
+    segmentsProperties[segmentNumber] = segmentProperties
+      ? { ...segmentProperties, ...properties }
+      : properties;

    updateState('cachedSegmentsProperties', segmentsProperties);
  };
@@ -499,10 +507,13 @@ const SegmentationPanel = ({
    configuration.fillAlphaInactive = newConfiguration.fillAlphaInactive;
    configuration.outlineAlphaInactive = newConfiguration.outlineAlphaInactive;
    onConfigurationChange(newConfiguration);
-    refreshViewport();
+    refreshViewports();
  };

-  const disabledConfigurationFields = ['outlineAlpha', 'shouldRenderInactiveLabelmaps'];
+  const disabledConfigurationFields = [
+    'outlineAlpha',
+    'shouldRenderInactiveLabelmaps',
+  ];
  if (state.showSegmentationSettings) {
    return (
      <SegmentationSettings
@@ -514,7 +525,10 @@ const SegmentationPanel = ({
    );
  } else {
    return (
-      <div className={`dcmseg-segmentation-panel ${state.isDisabled && 'disabled'}`}>
+      <div
+        className={`dcmseg-segmentation-panel ${state.isDisabled &&
+          'disabled'}`}
+      >
        <Icon
          className="cog-icon"
          name="cog"
@@ -613,57 +627,6 @@ const _getReferencedSegDisplaysets = (StudyInstanceUID, SeriesInstanceUID) => {
  return referencedDisplaysets;
 };

-/**
- *
- *
- * @param {*} viewportSpecificData
- * @param {*} studies
- * @param {*} displaySet
- * @param {*} firstImageId
- * @param {*} activeLabelmapIndex
- * @returns
- */
-const _setActiveLabelmap = async (
-  viewportSpecificData,
-  studies,
-  displaySet,
-  firstImageId,
-  activeLabelmapIndex,
-  callback = () => { },
-  onDisplaySetLoadFailure
-) => {
-  if (displaySet.labelmapIndex === activeLabelmapIndex) {
-    log.warn(`${activeLabelmapIndex} is already the active labelmap`);
-    return displaySet.labelmapIndex;
-  }
-
-  if (!displaySet.isLoaded) {
-    // What props does this expect `viewportSpecificData` to have?
-    // TODO: Should this return the `labelmapIndex`?
-
-    const loadPromise = displaySet.load(viewportSpecificData, studies);
-
-    loadPromise.catch(error => {
-      onDisplaySetLoadFailure(error);
-
-      // Return old index.
-      return activeLabelmapIndex;
-    });
-
-    await loadPromise;
-  }
-
-  const { state } = cornerstoneTools.getModule('segmentation');
-  const brushStackState = state.series[firstImageId];
-  brushStackState.activeLabelmapIndex = displaySet.labelmapIndex;
-
-  refreshViewport();
-
-  callback();
-
-  return displaySet.labelmapIndex;
-};
-
 /**
 *
 * @param {*} firstImageId
@@ -683,7 +646,7 @@ const _setActiveSegment = (firstImageId, segmentIndex, activeSegmentIndex) => {
    brushStackState.labelmaps3D[brushStackState.activeLabelmapIndex];
  labelmap3D.activeSegmentIndex = segmentIndex;

-  refreshViewport();
+  refreshViewports();

  return segmentIndex;
 };
@@ -1,5 +1,6 @@
 import { MODULE_TYPES, utils } from '@ohif/core';
 import loadSegmentation from './loadSegmentation';
+import getSourceDisplaySet from './getSourceDisplaySet';

 // TODO: Should probably use dcmjs for this
 const SOP_CLASS_UIDS = {
@@ -54,6 +55,10 @@ export default function getSopClassHandlerModule({ servicesManager }) {
        SeriesDescription,
      };

+      segDisplaySet.getSourceDisplaySet = function(studies) {
+        return getSourceDisplaySet(studies, segDisplaySet);
+      };
+
      segDisplaySet.load = function(referencedDisplaySet, studies) {
        return loadSegmentation(segDisplaySet, referencedDisplaySet, studies);
      };
@@ -0,0 +1,37 @@
+import setActiveLabelmap from './utils/setActiveLabelMap';
+
+export default function getSourceDisplaySet(studies, segDisplaySet) {
+  const referencedDisplaySet = _getReferencedDisplaySet(segDisplaySet, studies);
+
+  setActiveLabelmap(referencedDisplaySet, studies, segDisplaySet);
+
+  return referencedDisplaySet;
+}
+
+const _getReferencedDisplaySet = (segDisplaySet, studies) => {
+  let allDisplaySets = [];
+
+  studies.forEach(study => {
+    allDisplaySets = allDisplaySets.concat(study.displaySets);
+  });
+
+  const otherDisplaySets = allDisplaySets.filter(
+    ds => ds.displaySetInstanceUID !== segDisplaySet.displaySetInstanceUID
+  );
+
+  const ReferencedSeriesSequence = Array.isArray(
+    segDisplaySet.metadata.ReferencedSeriesSequence
+  )
+    ? segDisplaySet.metadata.ReferencedSeriesSequence
+    : [segDisplaySet.metadata.ReferencedSeriesSequence];
+
+  const referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
+    ReferencedSeries => ReferencedSeries.SeriesInstanceUID
+  );
+
+  const referencedDisplaySet = otherDisplaySets.find(ds =>
+    referencedSeriesInstanceUIDs.includes(ds.SeriesInstanceUID)
+  );
+
+  return referencedDisplaySet;
+};
@@ -41,6 +41,7 @@ export default async function loadSegmentation(
      results = _parseSeg(segArrayBuffer, imageIds);
    } catch (error) {
      segDisplaySet.isLoaded = false;
+      segDisplaySet.loadError = true;
      reject(error);
    }

@@ -0,0 +1,5 @@
+export default function refreshViewports() {
+  cornerstone.getEnabledElements().forEach(enabledElement => {
+    cornerstone.updateImage(enabledElement.element);
+  });
+}
@@ -0,0 +1,67 @@
+import { utils, log } from '@ohif/core';
+import cornerstoneTools from 'cornerstone-tools';
+import refreshViewports from './refreshViewports';
+
+const { studyMetadataManager } = utils;
+
+/**
+ *
+ *
+ * @param {*} viewportSpecificData
+ * @param {*} studies
+ * @param {*} displaySet
+ * @param {*} firstImageId
+ * @param {*} activeLabelmapIndex
+ * @returns
+ */
+export default async function setActiveLabelmap(
+  referencedDisplaySet,
+  studies,
+  displaySet,
+  callback = () => {},
+  onDisplaySetLoadFailure = err => {
+    throw new Error(err.message);
+  }
+) {
+  const studyMetadata = studyMetadataManager.get(
+    referencedDisplaySet.StudyInstanceUID
+  );
+  const firstImageId = studyMetadata.getFirstImageId(
+    referencedDisplaySet.displaySetInstanceUID
+  );
+
+  let { state } = cornerstoneTools.getModule('segmentation');
+
+  let brushStackState = state.series[firstImageId];
+  const activeLabelmapIndex = brushStackState
+    ? brushStackState.activeLabelmapIndex
+    : undefined;
+
+  if (displaySet.labelmapIndex === activeLabelmapIndex) {
+    log.warn(`${activeLabelmapIndex} is already the active labelmap`);
+    return displaySet.labelmapIndex;
+  }
+
+  if (!displaySet.isLoaded) {
+    const loadPromise = displaySet.load(referencedDisplaySet, studies);
+
+    loadPromise.catch(error => {
+      onDisplaySetLoadFailure(error);
+
+      // Return old index.
+      return activeLabelmapIndex;
+    });
+
+    await loadPromise;
+  }
+
+  // This might have just been created, so need to use the non-cached value.
+  state = cornerstoneTools.getModule('segmentation').state;
+  brushStackState = state.series[firstImageId];
+  brushStackState.activeLabelmapIndex = displaySet.labelmapIndex;
+
+  refreshViewports();
+  callback();
+
+  return displaySet.labelmapIndex;
+}
@@ -3,6 +3,62 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.

+## [1.6.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.9...@ohif/extension-vtk@1.6.10) (2020-08-10)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.6.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.8...@ohif/extension-vtk@1.6.9) (2020-07-23)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.6.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.7...@ohif/extension-vtk@1.6.8) (2020-07-22)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.6.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.6...@ohif/extension-vtk@1.6.7) (2020-07-13)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.6.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.5...@ohif/extension-vtk@1.6.6) (2020-07-13)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.6.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.4...@ohif/extension-vtk@1.6.5) (2020-07-13)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.6.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.3...@ohif/extension-vtk@1.6.4) (2020-06-18)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
 ## [1.6.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.6.2...@ohif/extension-vtk@1.6.3) (2020-06-15)


@@ -1,6 +1,6 @@
 {
  "name": "@ohif/extension-vtk",
-  "version": "1.6.3",
+  "version": "1.6.10",
  "description": "OHIF extension for VTK.js",
  "author": "OHIF",
  "license": "MIT",
@@ -35,7 +35,7 @@
    "cornerstone-core": "^2.2.8",
    "cornerstone-tools": "4.15.1",
    "cornerstone-wado-image-loader": "^3.1.0",
-    "dcmjs": "0.13.0",
+    "dcmjs": "0.16.0",
    "dicom-parser": "^1.8.3",
    "i18next": "^17.0.3",
    "i18next-browser-languagedetector": "^3.0.1",
@@ -53,8 +53,8 @@
    "react-vtkjs-viewport": "^0.9.0"
  },
  "devDependencies": {
-    "@ohif/core": "^2.9.8",
-    "@ohif/ui": "^1.5.1",
+    "@ohif/core": "^2.9.14",
+    "@ohif/ui": "^1.5.3",
    "cornerstone-tools": "4.15.1",
    "cornerstone-wado-image-loader": "^3.1.0",
    "dicom-parser": "^1.8.3",
@@ -0,0 +1,26 @@
+#!/bin/sh
+NODE_MODULES_CACHE="./node_modules"
+LERNA_CACHE="$NODE_MODULES_CACHE/lerna-cache"
+
+echo "Running netlify-lerna-cache.sh"
+mkdir -p "$NODE_MODULES_CACHE/lerna-cache"
+
+cache_deps() {
+    PACKAGES=$(ls -1 $1)
+
+    for PKG in $PACKAGES
+    do
+        PKG_NODE_MODULES="$1/$PKG/node_modules"
+        if [ -d $PKG_NODE_MODULES ];
+        then
+            mv $PKG_NODE_MODULES $LERNA_CACHE/$PKG
+            echo "Cached node modules for $PKG"
+        else
+            echo "Unable to cache node modules for $PKG"
+        fi
+    done
+}
+
+cache_deps platform
+cache_deps extensions
+cache_deps modes
@@ -0,0 +1,27 @@
+#!/bin/sh
+NODE_MODULES_CACHE="./node_modules"
+LERNA_CACHE="$NODE_MODULES_CACHE/lerna-cache"
+
+echo "Running netlify-lerna-restore.sh"
+mkdir -p "$NODE_MODULES_CACHE/lerna-cache"
+echo "$NODE_MODULES_CACHE/lerna-cache/*"
+
+restore_deps() {
+    PACKAGES=$(ls -1 $1)
+
+    for PKG in $PACKAGES
+    do
+        PKG_CACHE="$LERNA_CACHE/$PKG"
+        if [ -d $PKG_CACHE ];
+        then
+            mv $PKG_CACHE $1/$PKG/node_modules
+            echo "Restored node modules for $PKG"
+        else
+            echo "Unable to restore cache for $PKG"
+        fi
+    done
+}
+
+restore_deps platform
+restore_deps extensions
+restore_deps modes
@@ -8,6 +8,11 @@
 # managed by CircleCI and deployed to our Google Hosting
 #

+[build]
+  base = ""
+  publish = ".netlify/www/"
+  command = "chmod +x .netlify/build-deploy-preview.sh && .netlify/build-deploy-preview.sh"
+
 # NODE_VERSION in root `.nvmrc` takes priority
 # YARN_FLAGS: https://www.netlify.com/docs/build-gotchas/#yarn
 [build.environment]
@@ -16,19 +21,13 @@
  YARN_VERSION = "1.17.3"
  RUBY_VERSION = "2.6.2"
  YARN_FLAGS = "--no-ignore-optional --pure-lockfile"
+  NETLIFY_RESTORE = "1"

 # Production context: all deploys from the Production branch set in your site's
 # deploy contexts will inherit these settings.
 [context.production]
  ignore = "exit 0" # Never build production; We'll let our CI do that

-# Deploy Preview context: all deploys generated from a pull/merge request will
-# inherit these settings.
-[context.deploy-preview]
-  base = ""
-  publish = ".netlify/www/"
-  command = "chmod +x .netlify/build-deploy-preview.sh && .netlify/build-deploy-preview.sh"
-
 [[headers]]
  # Define which paths this specific [[headers]] block will cover.
  for = "/*"
@@ -34,6 +34,9 @@
    "see-changed": "lerna changed",
    "docs:publish": "chmod +x ./build-and-publish-docs.sh && ./build-and-publish-docs.sh",
    "release": "yarn run lerna:version && yarn run lerna:publish",
+    "lerna:cache": "[ $NETLIFY_RESTORE = 1 ] && ./netlify-lerna-cache.sh || :",
+    "lerna:restore": "[ $NETLIFY_RESTORE = 1 ] && ./netlify-lerna-restore.sh || :",
+    "preinstall": "yarn lerna:restore",
    "lerna:version": "npx lerna version prerelease --force-publish",
    "lerna:publish": "lerna publish from-package --canary --dist-tag canary",
    "link-list": "npm ls --depth=0 --link=true"
@@ -3,6 +3,63 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.

+## [2.9.14](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.13...@ohif/core@2.9.14) (2020-08-10)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.9.13](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.12...@ohif/core@2.9.13) (2020-07-22)
+
+
+### Bug Fixes
+
+* Switch DICOMFileUploader to use the UIModalService ([#1904](https://github.com/OHIF/Viewers/issues/1904)) ([7772fee](https://github.com/OHIF/Viewers/commit/7772fee21ae6a65994e1251e2f1d2554b47781be))
+
+
+
+
+
+## [2.9.12](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.11...@ohif/core@2.9.12) (2020-07-13)
+
+
+### Bug Fixes
+
+* 🐛 - Put guards in all places that a cornerstone re-render ([#1899](https://github.com/OHIF/Viewers/issues/1899)) ([451f7ea](https://github.com/OHIF/Viewers/commit/451f7eab9258e7a193eb362e0926b13aedc4b3c9))
+
+
+
+
+
+## [2.9.11](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.10...@ohif/core@2.9.11) (2020-07-13)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.9.10](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.9...@ohif/core@2.9.10) (2020-07-13)
+
+
+### Bug Fixes
+
+* 🐛 Fix RT Panel hide/show and Fix looping load errors ([#1877](https://github.com/OHIF/Viewers/issues/1877)) ([e7cc735](https://github.com/OHIF/Viewers/commit/e7cc735c03d02eeb0d3af4ba02c15ed4f81bbec2))
+
+
+
+
+
+## [2.9.9](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.8...@ohif/core@2.9.9) (2020-06-18)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
 ## [2.9.8](https://github.com/OHIF/Viewers/compare/@ohif/core@2.9.7...@ohif/core@2.9.8) (2020-06-15)


@@ -1,6 +1,6 @@
 {
  "name": "@ohif/core",
-  "version": "2.9.8",
+  "version": "2.9.14",
  "description": "Generic business logic for web-based medical imaging applications",
  "author": "OHIF Core Team",
  "license": "MIT",
@@ -39,7 +39,7 @@
  "dependencies": {
    "@babel/runtime": "^7.5.5",
    "ajv": "^6.10.0",
-    "dcmjs": "0.13.0",
+    "dcmjs": "0.16.0",
    "dicomweb-client": "^0.6.0",
    "immer": "6.0.2",
    "isomorphic-base64": "^1.0.2",
@@ -79,7 +79,7 @@ export class StudyMetadata extends Metadata {
    Object.defineProperty(this, 'studyInstanceUID', {
      configurable: false,
      enumerable: false,
-      get: function () {
+      get: function() {
        return this.getStudyInstanceUID();
      },
    });
@@ -135,12 +135,15 @@ export class StudyMetadata extends Metadata {
        study,
        sopClassUIDs
      );
+
      if (displaySet) {
        displaySet.sopClassModule = true;

-        displaySet.isDerived
-          ? this._addDerivedDisplaySet(displaySet)
-          : displaySets.push(displaySet);
+        if (displaySet.isDerived) {
+          this._addDerivedDisplaySet(displaySet);
+        }
+
+        displaySets.push(displaySet);

        return displaySets;
      }
@@ -215,6 +218,14 @@ export class StudyMetadata extends Metadata {
    // TODO -> Get x Modality by referencedSeriesInstanceUid, FoR, etc.
  }

+  /**
+   * Adds the displaySets to the studies list of derived displaySets.
+   * @param {array} displaySets The displaySets array to append to the derived displaysets list.
+   */
+  _addDerivedDisplaySets(displaySets) {
+    displaySets.map(displaySet => this._derivedDisplaySets.push(displaySet));
+  }
+
  /**
   * Returns a list of derived datasets in the study, filtered by the given filter.
   * @param {object} filter An object containing search filters
@@ -263,7 +274,7 @@ export class StudyMetadata extends Metadata {
      filteredDerivedDisplaySets = filteredDerivedDisplaySets.filter(
        displaySet =>
          displaySet.ReferencedFrameOfReferenceUID ===
-          ReferencedFrameOfReferenceUID
+          referencedFrameOfReferenceUID
      );
    }

@@ -251,7 +251,9 @@ export default class MeasurementApi {
        this.syncMeasurementsAndToolData();

        cornerstone.getEnabledElements().forEach(enabledElement => {
-          cornerstone.updateImage(enabledElement.element);
+          if (enabledElement.image) {
+            cornerstone.updateImage(enabledElement.element);
+          }
        });

        // Let others know that the measurements are updated
@@ -0,0 +1,9 @@
+import cornerstone from 'cornerstone-core';
+
+export default function refreshCornerstoneViewports() {
+  cornerstone.getEnabledElements().forEach(enabledElement => {
+    if (enabledElement.image) {
+      cornerstone.updateImage(enabledElement.element);
+    }
+  });
+}
@@ -4,6 +4,7 @@ import log from '../../log';
 import user from '../../user';
 import getImageAttributes from '../lib/getImageAttributes';
 import getLabel from '../lib/getLabel';
+import refreshCornerstoneViewports from '../lib/refreshCornerstoneViewports';

 export default function({ eventData, tool, toolGroupId, toolGroup }) {
  const measurementApi = MeasurementApi.Instance;
@@ -86,9 +87,7 @@ export default function({ eventData, tool, toolGroupId, toolGroup }) {
  }

  // TODO: This is very hacky, but will work for now
-  cornerstone.getEnabledElements().forEach(enabledElement => {
-    cornerstone.updateImage(enabledElement.element);
-  });
+  refreshCornerstoneViewports();

  // TODO: Notify about the last activated measurement

@@ -1,6 +1,7 @@
 import cornerstone from 'cornerstone-core';
 import { MeasurementApi } from '../classes';
 import log from '../../log';
+import refreshCornerstoneViewports from '../lib/refreshCornerstoneViewports';

 export default function({ eventData, tool, toolGroupId, toolGroup }) {
  log.info('CornerstoneToolsMeasurementRemoved');
@@ -37,9 +38,7 @@ export default function({ eventData, tool, toolGroupId, toolGroup }) {
  }

  // TODO: This is very hacky, but will work for now
-  cornerstone.getEnabledElements().forEach(enabledElement => {
-    cornerstone.updateImage(enabledElement.element);
-  });
+  refreshCornerstoneViewports();

  if (MeasurementApi.isToolIncluded(tool)) {
    // TODO: Notify that viewer suffered changes
@@ -4,6 +4,7 @@ import log from '../../log';
 import user from '../../user';
 import getImageAttributes from '../lib/getImageAttributes';
 import getLabel from '../lib/getLabel';
+import refreshCornerstoneViewports from '../lib/refreshCornerstoneViewports';

 export default function handleSingleMeasurementAdded({ eventData, tool }) {
  const measurementApi = MeasurementApi.Instance;
@@ -39,9 +40,7 @@ export default function handleSingleMeasurementAdded({ eventData, tool }) {
  }

  // TODO: This is very hacky, but will work for now
-  cornerstone.getEnabledElements().forEach(enabledElement => {
-    cornerstone.updateImage(enabledElement.element);
-  });
+  refreshCornerstoneViewports();

  // TODO: Notify about the last activated measurement

@@ -1,6 +1,7 @@
 import cornerstone from 'cornerstone-core';
 import { MeasurementApi } from '../classes';
 import log from '../../log';
+import refreshCornerstoneViewports from '../lib/refreshCornerstoneViewports';

 export default function handleSingleMeasurementRemoved({
  eventData,
@@ -35,9 +36,7 @@ export default function handleSingleMeasurementRemoved({
  });

  // TODO: This is very hacky, but will work for now
-  cornerstone.getEnabledElements().forEach(enabledElement => {
-    cornerstone.updateImage(enabledElement.element);
-  });
+  refreshCornerstoneViewports();

  if (MeasurementApi.isToolIncluded(tool)) {
    // TODO: Notify that viewer suffered changes
@@ -28,13 +28,14 @@ const serviceImplementation = {
 /**
 * Show a new UI modal;
 *
- * @param {ModalProps} props { content, contentProps, shouldCloseOnEsc, isOpen, closeButton, title, customClassName }
+ * @param {ModalProps} props { content, contentProps, shouldCloseOnEsc, isOpen, onClose, closeButton, title, customClassName }
 */
 function _show({
  content = null,
  contentProps = null,
  shouldCloseOnEsc = false,
  isOpen = true,
+  onClose = null,
  closeButton = true,
  title = null,
  customClassName = null,
@@ -44,6 +45,7 @@ function _show({
    contentProps,
    shouldCloseOnEsc,
    isOpen,
+    onClose,
    closeButton,
    title,
    customClassName,
@@ -82,12 +82,17 @@ const loadAndCacheDerivedDisplaySets = (referencedDisplaySet, studies) => {
  // For each type, see if any are loaded, if not load the most recent.
  Object.keys(displaySetsPerModality).forEach(key => {
    const displaySets = displaySetsPerModality[key];
+
    const isLoaded = displaySets.some(displaySet => displaySet.isLoaded);

    if (isLoaded) {
      return;
    }

+    if (displaySets.some(displaySet => displaySet.loadError)) {
+      return;
+    }
+
    // find most recent and load it.
    let recentDateTime = 0;
    let recentDisplaySet = displaySets[0];
@@ -102,6 +107,8 @@ const loadAndCacheDerivedDisplaySets = (referencedDisplaySet, studies) => {
      }
    });

+    recentDisplaySet.isLoading = true;
+
    promises.push(recentDisplaySet.load(referencedDisplaySet, studies));
  });

@@ -3,6 +3,25 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.

+## [1.5.3](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.5.2...@ohif/ui@1.5.3) (2020-07-23)
+
+**Note:** Version bump only for package @ohif/ui
+
+
+
+
+
+## [1.5.2](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.5.1...@ohif/ui@1.5.2) (2020-07-22)
+
+
+### Bug Fixes
+
+* Switch DICOMFileUploader to use the UIModalService ([#1904](https://github.com/OHIF/Viewers/issues/1904)) ([7772fee](https://github.com/OHIF/Viewers/commit/7772fee21ae6a65994e1251e2f1d2554b47781be))
+
+
+
+
+
 ## [1.5.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.5.0...@ohif/ui@1.5.1) (2020-06-05)

 **Note:** Version bump only for package @ohif/ui
@@ -0,0 +1,25 @@
+const path = require('path');
+// ~~ Plugins
+const PnpWebpackPlugin = require(`pnp-webpack-plugin`); // Required until Webpack@5
+
+exports.onCreateWebpackConfig = args => {
+  args.actions.setWebpackConfig({
+    node: { fs: 'empty' },
+    resolve: {
+      plugins: [PnpWebpackPlugin],
+      // Note the '..' in the path because docz gatsby project lives in the '.docz' directory
+      modules: [
+        // platform/ui
+        path.resolve(__dirname, '../node_modules'),
+        // .docz
+        'node_modules',
+      ],
+      // resolve: {
+      //   symlinks: true,
+      // },
+    },
+    resolveLoader: {
+      plugins: [PnpWebpackPlugin.moduleLoader(module)],
+    },
+  });
+};
@@ -1,6 +1,6 @@
 {
  "name": "@ohif/ui",
-  "version": "1.5.1",
+  "version": "1.5.3",
  "description": "A set of React components for Medical Imaging Viewers",
  "author": "OHIF Contributors",
  "license": "MIT",
@@ -41,13 +41,14 @@
    "@ohif/i18n": "^0.2.3",
    "browser-detect": "^0.2.28",
    "classnames": "2.2.6",
+    "dom-helpers": "^3.3.1",
    "i18next": "^17.0.3",
    "i18next-browser-languagedetector": "^3.0.1",
    "lodash.debounce": "^4.0.8",
    "lodash.isequal": "4.5.0",
    "moment": "2.24.0",
    "prop-types": "15.6.2",
-    "react-bootstrap-modal": "4.2.0",
+    "prop-types-extra": "^1.1.1",
    "react-dates": "21.2.1",
    "react-dnd": "9.4.0",
    "react-dnd-html5-backend": "^9.4.0",
@@ -56,6 +57,8 @@
    "react-error-boundary": "^2.2.1",
    "react-i18next": "^10.11.0",
    "react-modal": "^3.11.1",
+    "react-overlays": "^0.8.0",
+    "react-transition-group": "2.0.0",
    "react-with-direction": "1.3.0"
  },
  "devDependencies": {
@@ -32,6 +32,7 @@ const ModalProvider = ({ children, modal: Modal, service }) => {
    contentProps: null,
    shouldCloseOnEsc: false,
    isOpen: true,
+    onClose: null,
    closeButton: true,
    title: null,
    customClassName: '',
@@ -73,6 +74,7 @@ const ModalProvider = ({ children, modal: Modal, service }) => {
    content: ModalContent,
    contentProps,
    isOpen,
+    onClose,
    title,
    customClassName,
    shouldCloseOnEsc,
@@ -88,7 +90,13 @@ const ModalProvider = ({ children, modal: Modal, service }) => {
          isOpen={isOpen}
          title={title}
          closeButton={closeButton}
-          onClose={hide}
+          onClose={() => {
+            if (onClose) {
+              onClose();
+            }
+
+            hide();
+          }}
        >
          <ModalContent {...contentProps} show={show} hide={hide} />
        </Modal>
@@ -3,6 +3,103 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.

+## [4.2.16](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.15...@ohif/viewer@4.2.16) (2020-08-10)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.2.15](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.14...@ohif/viewer@4.2.15) (2020-08-05)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.2.14](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.13...@ohif/viewer@4.2.14) (2020-08-05)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.2.13](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.12...@ohif/viewer@4.2.13) (2020-07-23)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.2.12](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.11...@ohif/viewer@4.2.12) (2020-07-22)
+
+
+### Bug Fixes
+
+* Switch DICOMFileUploader to use the UIModalService ([#1904](https://github.com/OHIF/Viewers/issues/1904)) ([7772fee](https://github.com/OHIF/Viewers/commit/7772fee21ae6a65994e1251e2f1d2554b47781be))
+
+
+
+
+
+## [4.2.11](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.10...@ohif/viewer@4.2.11) (2020-07-13)
+
+
+### Bug Fixes
+
+* 🐛 - Put guards in all places that a cornerstone re-render ([#1899](https://github.com/OHIF/Viewers/issues/1899)) ([451f7ea](https://github.com/OHIF/Viewers/commit/451f7eab9258e7a193eb362e0926b13aedc4b3c9))
+
+
+
+
+
+## [4.2.10](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.9...@ohif/viewer@4.2.10) (2020-07-13)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.2.9](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.8...@ohif/viewer@4.2.9) (2020-07-13)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.2.8](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.7...@ohif/viewer@4.2.8) (2020-07-13)
+
+
+### Bug Fixes
+
+* 🐛 Fix RT Panel hide/show and Fix looping load errors ([#1877](https://github.com/OHIF/Viewers/issues/1877)) ([e7cc735](https://github.com/OHIF/Viewers/commit/e7cc735c03d02eeb0d3af4ba02c15ed4f81bbec2))
+
+
+
+
+
+## [4.2.7](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.6...@ohif/viewer@4.2.7) (2020-06-18)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.2.6](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.5...@ohif/viewer@4.2.6) (2020-06-18)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
 ## [4.2.5](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.2.4...@ohif/viewer@4.2.5) (2020-06-15)


@@ -115,13 +115,13 @@ Commands to run the tests:

 ```js
 // Open Cypress Dashboard that provides insight into what happened when your tests ran
-yarn run cy
+yarn test:e2e

 // Run all tests using Electron browser headless
-yarn run cy:run
+yarn test:e2e:local

 // Run all tests in CI mode
-yarn run cy:run:ci
+yarn run test:e2e:ci
 ```

 ### Contributing
@@ -5,17 +5,18 @@ describe('OHIF Routes', function() {
    cy.openStudyList();
  });

-  it('checks TEST json url study route', function() {
-    cy.visit(
-      '/viewer?url=https://ohif-viewer.s3.eu-central-1.amazonaws.com/JSON/testJSON.json'
-    );
+  // TODO -> Bring back when testJSON is hosted again.
+  // it('checks TEST json url study route', function() {
+  //   cy.visit(
+  //     '/viewer?url=https://ohif-viewer.s3.eu-central-1.amazonaws.com/JSON/testJSON.json'
+  //   );

-    cy.server();
-    cy.route('GET', '**/MRStudy/**').as('getTESTStudy');
+  //   cy.server();
+  //   cy.route('GET', '**/ MRStudy; /**').as('getTESTStudy');

-    cy.wait('@getTESTStudy.all');
-    cy.get('@getTESTStudy').should($route => {
-      expect($route.status).to.be.eq(200);
-    });
-  });
+  //   cy.wait('@getTESTStudy.all');
+  //   cy.get('@getTESTStudy').should($route => {
+  //     expect($route.status).to.be.eq(200);
+  //   });
+  // });
 });
@@ -38,12 +38,12 @@ describe('OHIF Study List', function() {
    });

    it('searches Accession with exact string', function() {
-      cy.get('@AccessionNumber').type('fpcben98890');
+      cy.get('@AccessionNumber').type('0000481914');
      //Wait result list to be displayed
      cy.waitStudyList();
      cy.get('@searchResult').should($list => {
        expect($list.length).to.be.eq(1);
-        expect($list).to.contain('fpcben98890');
+        expect($list).to.contain('0000481914');
      });
    });

@@ -52,7 +52,8 @@ describe('OHIF Study List', function() {
      //Wait result list to be displayed
      cy.waitStudyList();
      cy.get('@searchResult').should($list => {
-        expect($list.length).to.be.eq(16); // TODO: Where are you hiding MISTER^MR?
+        // TODO: Why are we facing some inconsistency with this result? ¯\_(ツ)_/¯
+        expect($list.length).to.be.eq(9);
        expect($list).to.contain('MR');
      });
    });
@@ -147,18 +148,19 @@ describe('OHIF Study List', function() {
      //Wait result list to be displayed
      cy.waitStudyList();
      cy.get('@searchResult').should($list => {
-        expect($list.length).to.be.eq(16); // TODO: Where are you hiding MISTER^MR?
+        // TODO: Why are we facing some inconsistency with this result? ¯\_(ツ)_/¯
+        expect($list.length).to.be.eq(9);
        expect($list).to.contain('MR');
      });
    });

    it('searches Accession with exact string', function() {
-      cy.get('@accessionModalityDescription').type('fpcben98890');
+      cy.get('@accessionModalityDescription').type('0000481914');
      //Wait result list to be displayed
      cy.waitStudyList();
      cy.get('@searchResult').should($list => {
        expect($list.length).to.be.eq(1);
-        expect($list).to.contain('fpcben98890');
+        expect($list).to.contain('0000481914');
      });
    });

@@ -12,6 +12,8 @@ describe('OHIF Microscopy Extension', () => {
  });

  it('drags and drop a SM thumbnail into viewport', () => {
+    // Waiting for series list to load all displaySets (lots of SRs, before defining which dom element to grab.)
+    cy.wait(3000);
    cy.get('[data-cy="thumbnail-list"]')
      .contains('SM')
      .drag('.viewport-drop-target');
@@ -5,13 +5,15 @@ describe('Visual Regression - OHIF Routes', function() {
    cy.openStudyList();
  });

+  /*
+  // TODO -> Bring back when testJSON is hosted again.
  it('checks TEST json url study route', function() {
    cy.visit(
      '/viewer?url=https://ohif-viewer.s3.eu-central-1.amazonaws.com/JSON/testJSON.json'
    );

    cy.server();
-    cy.route('GET', '**/TESTStudy/**').as('getTESTStudy');
+    cy.route('GET', '**/ TESTStudy; /**').as('getTESTStudy');

    cy.wait('@getTESTStudy.all');
    cy.get('@getTESTStudy').should($route => {
@@ -20,4 +22,5 @@ describe('Visual Regression - OHIF Routes', function() {

    cy.percyCanvasSnapshot('TEST json study route');
  });
+  */
 });
@@ -109,7 +109,7 @@ Cypress.Commands.add('waitStudyList', () => {

 Cypress.Commands.add('waitVTKLoading', () => {
  // Wait for start loading
-  cy.get('[data-cy="viewprt-grid"]', { timeout: 10000 }).should($grid => {
+  cy.get('[data-cy="viewprt-grid"]', { timeout: 20000 }).should($grid => {
    expect($grid).to.contain.text('Loading');
  });

@@ -1,6 +1,6 @@
 {
  "name": "@ohif/viewer",
-  "version": "4.2.5",
+  "version": "4.2.16",
  "description": "OHIF Viewer",
  "author": "OHIF Contributors",
  "license": "MIT",
@@ -48,18 +48,18 @@
  },
  "dependencies": {
    "@babel/runtime": "^7.5.5",
-    "@ohif/core": "^2.9.8",
-    "@ohif/extension-cornerstone": "^2.8.2",
-    "@ohif/extension-dicom-html": "^1.2.3",
+    "@ohif/core": "^2.9.14",
+    "@ohif/extension-cornerstone": "^2.8.5",
+    "@ohif/extension-dicom-html": "^1.2.4",
    "@ohif/extension-dicom-microscopy": "^0.51.0",
-    "@ohif/extension-dicom-p10-downloader": "^0.1.1",
+    "@ohif/extension-dicom-p10-downloader": "^0.1.2",
    "@ohif/extension-dicom-pdf": "^1.0.3",
-    "@ohif/extension-dicom-rt": "^0.2.1",
-    "@ohif/extension-dicom-segmentation": "^0.3.1",
+    "@ohif/extension-dicom-rt": "^0.2.7",
+    "@ohif/extension-dicom-segmentation": "^0.3.4",
    "@ohif/extension-lesion-tracker": "^0.2.0",
-    "@ohif/extension-vtk": "^1.6.3",
+    "@ohif/extension-vtk": "^1.6.10",
    "@ohif/i18n": "^0.52.8",
-    "@ohif/ui": "^1.5.1",
+    "@ohif/ui": "^1.5.3",
    "@tanem/react-nprogress": "^1.1.25",
    "classnames": "^2.2.6",
    "core-js": "^3.2.1",
@@ -67,7 +67,7 @@
    "cornerstone-math": "^0.1.8",
    "cornerstone-tools": "4.15.1",
    "cornerstone-wado-image-loader": "^3.1.0",
-    "dcmjs": "0.13.0",
+    "dcmjs": "0.16.0",
    "dicom-parser": "^1.8.3",
    "dicomweb-client": "^0.4.4",
    "hammerjs": "^2.0.8",
@@ -9,11 +9,10 @@ window.config = function(props) {
    httpErrorHandler: error => {
      // This is 429 when rejected from the public idc sandbox too often.
      console.warn(error.status);
-
      // Could use services manager here to bring up a dialog/modal if needed.
      console.warn('test, navigate to https://ohif.org/');
      window.location = 'https://ohif.org/';
    },
-    healthcareApiEndpoint: 'https://idc-sandbox-002.appspot.com/v1beta1',
+    healthcareApiEndpoint: 'https://proxy-dot-idc-dev.appspot.com/v1beta1',
  };
 };
@@ -329,7 +329,9 @@ const mapDispatchToProps = (dispatch, ownProps) => {
      measurementApi.syncMeasurementsAndToolData();

      cornerstone.getEnabledElements().forEach(enabledElement => {
-        cornerstone.updateImage(enabledElement.element);
+        if (enabledElement.image) {
+          cornerstone.updateImage(enabledElement.element);
+        }
      });

      // Needs to update viewports.layout state to set layout
@@ -80,6 +80,7 @@ const ViewportGrid = function(props) {
      // - When updating a panel, ensure that the currently enabled plugin
      // in the viewport is capable of rendering this display set. If not
      // then use the most capable available plugin
+
      const pluginName =
        !layout.plugin && displaySet && displaySet.plugin
          ? displaySet.plugin
@@ -4,6 +4,8 @@ import { StudyBrowser } from '@ohif/ui';
 import cloneDeep from 'lodash.clonedeep';
 import findDisplaySetByUID from './findDisplaySetByUID';

+const { studyMetadataManager } = OHIF.utils;
+
 const { setActiveViewportSpecificData } = OHIF.redux.actions;

 // TODO
@@ -39,11 +41,27 @@ const mapStateToProps = (state, ownProps) => {
 const mapDispatchToProps = (dispatch, ownProps) => {
  return {
    onThumbnailClick: displaySetInstanceUID => {
-      const displaySet = findDisplaySetByUID(
+      let displaySet = findDisplaySetByUID(
        ownProps.studyMetadata,
        displaySetInstanceUID
      );

+      if (displaySet.isDerived) {
+        const { Modality } = displaySet;
+
+        displaySet = displaySet.getSourceDisplaySet(ownProps.studyMetadata);
+
+        if (!displaySet) {
+          throw new Error(
+            `Referenced series for ${Modality} dataset not present.`
+          );
+        }
+
+        if (!displaySet) {
+          throw new Error('Source data not present');
+        }
+      }
+
      dispatch(setActiveViewportSpecificData(displaySet));
    },
  };
@@ -133,12 +133,23 @@ class ViewerMain extends Component {
    StudyInstanceUID,
    displaySetInstanceUID,
  }) => {
-    const displaySet = this.findDisplaySet(
+    let displaySet = this.findDisplaySet(
      this.props.studies,
      StudyInstanceUID,
      displaySetInstanceUID
    );

+    if (displaySet.isDerived) {
+      const { Modality } = displaySet;
+      displaySet = displaySet.getSourceDisplaySet(this.props.studies);
+
+      if (!displaySet) {
+        throw new Error(
+          `Referenced series for ${Modality} dataset not present.`
+        );
+      }
+    }
+
    this.props.setViewportSpecificData(viewportIndex, displaySet);
  };

@@ -1,4 +1,4 @@
-import React, { useState, useEffect, useContext } from 'react';
+import React, { useState, useEffect, useContext, useCallback } from 'react';
 import { metadata, studies, utils, log } from '@ohif/core';
 import usePrevious from '../customHooks/usePrevious';

@@ -7,13 +7,13 @@ import PropTypes from 'prop-types';
 import { extensionManager } from './../App.js';
 import { useSnackbarContext } from '@ohif/ui';

+// Contexts
+import AppContext from '../context/AppContext';
+
 const { OHIFStudyMetadata, OHIFSeriesMetadata } = metadata;
 const { retrieveStudiesMetadata, deleteStudyMetadataPromise } = studies;
 const { studyMetadataManager, makeCancelable } = utils;

-// Contexts
-import AppContext from '../context/AppContext';
-
 const _promoteToFront = (list, value, searchMethod) => {
  let response = [...list];
  let promoted = false;
@@ -105,7 +105,7 @@ const _showUserMessage = (queryParamApplied, message, dialog = {}) => {
    return;
  }

-  const { show: showUserMessage = () => { } } = dialog;
+  const { show: showUserMessage = () => {} } = dialog;
  showUserMessage({
    message,
  });
@@ -125,9 +125,14 @@ const _addSeriesToStudy = (studyMetadata, series) => {

  studyMetadata.createAndAddDisplaySetsForSeries(
    sopClassHandlerModules,
-    seriesMetadata,
+    seriesMetadata
  );
+
  study.displaySets = studyMetadata.getDisplaySets();
+  study.derivedDisplaySets = studyMetadata.getDerivedDatasets({
+    Modality: series.Modality,
+  });
+
  _updateStudyMetadataManager(study, studyMetadata);
 };

@@ -147,6 +152,10 @@ const _updateStudyDisplaySets = (study, studyMetadata) => {
    study.displaySets = studyMetadata.createDisplaySets(sopClassHandlerModules);
  }

+  if (study.derivedDisplaySets) {
+    studyMetadata._addDerivedDisplaySets(study.derivedDisplaySets);
+  }
+
  studyMetadata.setDisplaySets(study.displaySets);
 };

@@ -158,9 +167,9 @@ const _thinStudyData = study => {
  return {
    StudyInstanceUID: study.StudyInstanceUID,
    series: study.series.map(item => ({
-      SeriesInstanceUID: item.SeriesInstanceUID
+      SeriesInstanceUID: item.SeriesInstanceUID,
    })),
-  }
+  };
 };

 function ViewerRetrieveStudyData({
@@ -276,7 +285,8 @@ function ViewerRetrieveStudyData({
      return loadNextSeries();
    };

-    const concurrentRequestsAllowed = maxConcurrentMetadataRequests || studyMetadata.getSeriesCount();
+    const concurrentRequestsAllowed =
+      maxConcurrentMetadataRequests || studyMetadata.getSeriesCount();
    const promises = Array(concurrentRequestsAllowed)
      .fill(null)
      .map(loadNextSeries);
@@ -322,7 +332,7 @@ function ViewerRetrieveStudyData({
    }
  };

-  const purgeCancellablePromises = () => {
+  const purgeCancellablePromises = useCallback(() => {
    for (let studyInstanceUIDs in cancelableStudiesPromises) {
      if ('cancel' in cancelableStudiesPromises[studyInstanceUIDs]) {
        cancelableStudiesPromises[studyInstanceUIDs].cancel();
@@ -336,7 +346,7 @@ function ViewerRetrieveStudyData({
        studyMetadataManager.remove(studyInstanceUIDs);
      }
    }
-  };
+  });

  const prevStudyInstanceUIDs = usePrevious(studyInstanceUIDs);

@@ -350,7 +360,7 @@ function ViewerRetrieveStudyData({
      studyMetadataManager.purge();
      purgeCancellablePromises();
    }
-  }, [studyInstanceUIDs]);
+  }, [prevStudyInstanceUIDs, purgeCancellablePromises, studyInstanceUIDs]);

  useEffect(() => {
    cancelableSeriesPromises = {};
@@ -1,49 +1,44 @@
 import React, { Component } from 'react';
 import PropTypes from 'prop-types';
-import Modal from 'react-bootstrap-modal';
 import DicomUploader from './DicomUploader';
 import { withTranslation } from 'react-i18next';
+import { servicesManager } from './../App.js';

-class DicomFileUploaderModal extends Component {
-  static propTypes = {
-    url: PropTypes.string,
-    retrieveAuthHeaderFunction: PropTypes.func,
-    onClose: PropTypes.func,
-  };
+function DicomFileUploaderModal({
+                                 isOpen = false,
+                                 onClose,
+                                 url,
+                                 retrieveAuthHeaderFunction,
+                                 t,
+                               }) {
+  const { UIModalService } = servicesManager.services;

-  state = {
-    uploaded: false,
-  };
-
-  render() {
-    if (!this.props.url) {
-      return null;
+  const showDicomStorePickerModal = () => {
+    if (!UIModalService) {
+      return
    }

-    return (
-      <Modal
-        show={this.props.isOpen}
-        onHide={this.props.onClose}
-        aria-labelledby="ModalHeader"
-        className="modal fade themed in"
-        backdrop={false}
-        size={'md'}
-        keyboard={true}
-      >
-        <Modal.Header closeButton>
-          <Modal.Title>
-            {this.props.t('Upload DICOM Files')}
-          </Modal.Title>
-        </Modal.Header>
-        <Modal.Body>
-          <DicomUploader
-            url={this.props.url}
-            retrieveAuthHeaderFunction={this.props.retrieveAuthHeaderFunction}
-          />
-        </Modal.Body>
-      </Modal>
-    );
-  }
+    UIModalService.show({
+      content: DicomUploader,
+      title: t('Upload DICOM Files'),
+      contentProps: {
+        url,
+        retrieveAuthHeaderFunction
+      },
+      onClose,
+    });
+  };
+
+  return (
+    <React.Fragment>{isOpen && showDicomStorePickerModal()}</React.Fragment>
+  );
 }

+DicomFileUploaderModal.propTypes = {
+  isOpen: PropTypes.bool.isRequired,
+  retrieveAuthHeaderFunction: PropTypes.func.isRequired,
+  onClose: PropTypes.func,
+  url: PropTypes.string,
+};
+
 export default withTranslation('Common')(DicomFileUploaderModal);
@@ -36,6 +36,7 @@ function DicomStorePickerModal({
          user,
          url,
        },
+        onClose
      });
    }
  };
@@ -4992,6 +4992,11 @@ cfb@^1.1.0:
    crc-32 "~1.2.0"
    printj "~1.1.2"

+chain-function@^1.0.0:
+  version "1.0.1"
+  resolved "https://registry.yarnpkg.com/chain-function/-/chain-function-1.0.1.tgz#c63045e5b4b663fb86f1c6e186adaf1de402a1cc"
+  integrity sha512-SxltgMwL9uCko5/ZCLiyG2B7R9fY4pDZUw7hJ4MhirdjBLosoDqkWABi3XMucddHdLiFJMb7PD2MZifZriuMTg==
+
 chalk@1.1.3, chalk@^1.0.0, chalk@^1.1.1, chalk@^1.1.3:
  version "1.1.3"
  resolved "https://registry.yarnpkg.com/chalk/-/chalk-1.1.3.tgz#a8115c55e4a702fe4d150abd3872822a7e09fc98"
@@ -6534,10 +6539,10 @@ dateformat@^3.0.0:
  resolved "https://registry.yarnpkg.com/dateformat/-/dateformat-3.0.3.tgz#a6e37499a4d9a9cf85ef5872044d62901c9889ae"
  integrity sha512-jyCETtSl3VMZMWeRo7iY1FL19ges1t55hMo5yaam4Jrsm5EPL89UQkoQRyiI+Yf4k8r2ZpdngkV8hr1lIdjb3Q==

-dcmjs@0.13.0:
-  version "0.13.0"
-  resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.13.0.tgz#16310a137a0fe800ccb2d4751a28cf023765f347"
-  integrity sha512-U+qGwlnkG8vwDKB4R7ryqQUtWQM1JHMKMBw5+Oy8wcPxS+vDmaRTqIcAItMh1DcZ0ia8RN0VI5TBVCOJl7GVhA==
+dcmjs@0.16.0:
+  version "0.16.0"
+  resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.16.0.tgz#714755d006c3a49cf65ef13e627ff7a23151d35a"
+  integrity sha512-41nY3Isg5i5FoSd1s67aUgUHi146r+fb8JuiRvDsxvm7MEkkdjIzMYMtxjsrVwKRW1xRH+x34nxbV9+8cc7WQw==
  dependencies:
    "@babel/polyfill" "^7.8.3"
    "@babel/runtime" "^7.8.4"
@@ -7247,7 +7252,7 @@ dom-converter@^0.2:
  dependencies:
    utila "~0.4"

-dom-helpers@^3.2.1, dom-helpers@^3.3.1, dom-helpers@^3.4.0:
+dom-helpers@^3.2.0, dom-helpers@^3.2.1, dom-helpers@^3.3.1, dom-helpers@^3.4.0:
  version "3.4.0"
  resolved "https://registry.yarnpkg.com/dom-helpers/-/dom-helpers-3.4.0.tgz#e9b369700f959f62ecde5a6babde4bccd9169af8"
  integrity sha512-LnuPJ+dwqKDIyotW1VzmOZ5TONUN7CwkCR5hrgawTUbkBGYdeoNLZo6nNfGkCrjtE1nXXaj7iMMpDa8/d9WoIA==
@@ -15293,13 +15298,13 @@ prop-types-exact@^1.2.0:
    object.assign "^4.1.0"
    reflect.ownkeys "^0.2.0"

-prop-types-extra@^1.0.1, prop-types-extra@^1.1.0:
-  version "1.1.0"
-  resolved "https://registry.yarnpkg.com/prop-types-extra/-/prop-types-extra-1.1.0.tgz#32609910ea2dcf190366bacd3490d5a6412a605f"
-  integrity sha512-QFyuDxvMipmIVKD2TwxLVPzMnO4e5oOf1vr3tJIomL8E7d0lr6phTHd5nkPhFIzTD1idBLLEPeylL9g+rrTzRg==
+prop-types-extra@^1.0.1, prop-types-extra@^1.1.1:
+  version "1.1.1"
+  resolved "https://registry.yarnpkg.com/prop-types-extra/-/prop-types-extra-1.1.1.tgz#58c3b74cbfbb95d304625975aa2f0848329a010b"
+  integrity sha512-59+AHNnHYCdiC+vMwY52WmvP5dM3QLeoumYuEyceQDi9aEhtwN9zIQ2ZNo25sMyXnbh32h+P1ezDsUpUH3JAew==
  dependencies:
    react-is "^16.3.2"
-    warning "^3.0.0"
+    warning "^4.0.0"

 prop-types@15.6.2:
  version "15.6.2"
@@ -15586,30 +15591,19 @@ re-resizable@^4.11.0:
  resolved "https://registry.yarnpkg.com/re-resizable/-/re-resizable-4.11.0.tgz#d5df10bda445c4ec0945751a223bf195afb61890"
  integrity sha512-dye+7rERqNf/6mDT1iwps+4Gf42420xuZgygF33uX178DxffqcyeuHbBuJ382FIcB5iP6mMZOhfW7kI0uXwb/Q==

-react-bootstrap-modal@4.2.0:
-  version "4.2.0"
-  resolved "https://registry.yarnpkg.com/react-bootstrap-modal/-/react-bootstrap-modal-4.2.0.tgz#010b3ca9230a3c147fa5fc6aa39b6971e34151bd"
-  integrity sha512-2Xx9yvPEnMNhJIAKCg+t3CECF6w3qt2mmICv1Y1vwDBHeuyyf3OvSFcnRM8E0Tn7pywgopL2qyU4yx0vnGKmdA==
-  dependencies:
-    classnames "^2.2.6"
-    dom-helpers "^3.3.1"
-    prop-types "^15.6.1"
-    prop-types-extra "^1.1.0"
-    react-overlays "^0.8.0"
-    react-transition-group "^2.0.0"
-
 react-codemirror2@^6.0.0:
  version "6.0.0"
  resolved "https://registry.yarnpkg.com/react-codemirror2/-/react-codemirror2-6.0.0.tgz#180065df57a64026026cde569a9708fdf7656525"
  integrity sha512-D7y9qZ05FbUh9blqECaJMdDwKluQiO3A9xB+fssd5jKM7YAXucRuEOlX32mJQumUvHUkHRHqXIPBjm6g0FW0Ag==

-react-cornerstone-viewport@2.3.9:
-  version "2.3.9"
-  resolved "https://registry.yarnpkg.com/react-cornerstone-viewport/-/react-cornerstone-viewport-2.3.9.tgz#f9761da8e536f0a217137c6ca1a983f5882249f9"
-  integrity sha512-qrhq8CbX/jq6b93cQjV2qC/mhHOvFBpxzxcHlvHzEQZt/rmRMcaYxCqjpNaNbUmmBu61wNkxesUVsggkPTTcqg==
+react-cornerstone-viewport@4.0.1:
+  version "4.0.1"
+  resolved "https://registry.yarnpkg.com/react-cornerstone-viewport/-/react-cornerstone-viewport-4.0.1.tgz#6a7ec4c01b0626c4ad11552368f3dfa6cd67bdd5"
+  integrity sha512-47YhFsLS5vCWjiOKS9FwLxtA738HIHuNfdn3EJw6GyWD9jwL5HJQ/Ue1mKATjyHRvb3AyJTJuC/lGl0bsqKbYw==
  dependencies:
    classnames "^2.2.6"
    date-fns "^2.2.1"
+    lodash.debounce "^4.0.8"
    prop-types "^15.7.2"
    react-resize-detector "^4.2.1"

@@ -15859,7 +15853,12 @@ react-input-autosize@^2.2.2:
  dependencies:
    prop-types "^15.5.8"

-react-is@^16.3.2, react-is@^16.6.0, react-is@^16.7.0, react-is@^16.8.1, react-is@^16.8.4, react-is@^16.9.0:
+react-is@^16.3.2:
+  version "16.13.1"
+  resolved "https://registry.yarnpkg.com/react-is/-/react-is-16.13.1.tgz#789729a4dc36de2999dc156dd6c1d9c18cea56a4"
+  integrity sha512-24e6ynE2H+OKt4kqsOvNd8kBpV65zoxbA4BVsEOB3ARVWQki/DHzaUoC5KuON/BiccDaCCTZBuOcfZs70kR8bQ==
+
+react-is@^16.6.0, react-is@^16.7.0, react-is@^16.8.1, react-is@^16.8.4, react-is@^16.9.0:
  version "16.11.0"
  resolved "https://registry.yarnpkg.com/react-is/-/react-is-16.11.0.tgz#b85dfecd48ad1ce469ff558a882ca8e8313928fa"
  integrity sha512-gbBVYR2p8mnriqAwWx9LbuUrShnAuSCNnuPGyc7GJrMVQtPDAh8iLpv7FRuMPFb56KkaVZIYSz1PrjI9q0QPCw==
@@ -16016,7 +16015,19 @@ react-simple-code-editor@^0.9.0:
  resolved "https://registry.yarnpkg.com/react-simple-code-editor/-/react-simple-code-editor-0.9.15.tgz#59e3583832e9e98992d3674b2d7673b4cd1c5709"
  integrity sha512-M8iKgjBTBZK92tZYgOEfMuR7c3zZ0q0v3QYllSxIPx3SU+w003VofH50txXQSBTu92pSOm2tidON1HbQ1l8BDA==

-react-transition-group@^2.0.0, react-transition-group@^2.2.0, react-transition-group@^2.2.1:
+react-transition-group@2.0.0:
+  version "2.0.0"
+  resolved "https://registry.yarnpkg.com/react-transition-group/-/react-transition-group-2.0.0.tgz#e882e61fce8622ed981b6e31fc7ef52d43a1a06a"
+  integrity sha1-6ILmH86GIu2YG24x/H71LUOhoGo=
+  dependencies:
+    chain-function "^1.0.0"
+    classnames "^2.2.5"
+    dom-helpers "^3.2.0"
+    loose-envify "^1.3.1"
+    prop-types "^15.5.8"
+    warning "^3.0.0"
+
+react-transition-group@^2.2.0, react-transition-group@^2.2.1:
  version "2.9.0"
  resolved "https://registry.yarnpkg.com/react-transition-group/-/react-transition-group-2.9.0.tgz#df9cdb025796211151a436c69a8f3b97b5b07c8d"
  integrity sha512-+HzNTCHpeQyl4MJ/bdE0u6XRMe9+XG/+aL4mCxVN4DnPBQ0/5bfHWPDuOZUzYdMj94daZaZdCCc1Dzt9R/xSSg==
@@ -19722,7 +19733,7 @@ warning@^3.0.0:
  dependencies:
    loose-envify "^1.0.0"

-warning@^4.0.3:
+warning@^4.0.0, warning@^4.0.3:
  version "4.0.3"
  resolved "https://registry.yarnpkg.com/warning/-/warning-4.0.3.tgz#16e9e077eb8a86d6af7d64aa1e05fd85b4678ca3"
  integrity sha512-rpJyN222KWIvHJ/F53XSZv0Zl/accqHR8et1kpaMTD/fLCRxtV8iX8czMzY7sVZupTI3zcUTg8eycS2kNF9l6w==
Author	SHA1	Message	Date
ohif-bot	2a647fd618	chore(release): publish [skip ci] - @ohif/extension-dicom-rt@0.2.7 - @ohif/extension-dicom-segmentation@0.3.4 - @ohif/extension-vtk@1.6.10 - @ohif/core@2.9.14 - @ohif/viewer@4.2.16	2020-08-10 09:21:53 +00:00
James Petts	f8fc31bcac	[IDC-1670] Better display of derived datasets in side panel. (#1962 ) * WIP * WIP * WIP * WIP * Working click on seg. * Load SEG if not loaded and set active. * RTSTRUCT * feat: 🎸 Display SEG and RTSTRUCT in side panel * Throw error if dataset not available. * Add delay in microscopy viewer e2e test. * Add delay in microscopy viewer e2e test.	2020-08-10 11:20:31 +02:00
ohif-bot	b7ab88b0f1	chore(release): publish [skip ci] - @ohif/extension-cornerstone@2.8.5 - @ohif/viewer@4.2.15	2020-08-05 09:48:08 +00:00
James Petts	57a30d7c34	[IDC-1956] - Remove loading %age which is always zero. (#1959 ) * Remove loading percent. * fix: 🐛 Remove % loading on cornerstone viewport	2020-08-05 11:46:42 +02:00
ohif-bot	cd90665b0e	chore(release): publish [skip ci] - @ohif/extension-dicom-rt@0.2.6 - @ohif/viewer@4.2.14	2020-08-05 09:03:27 +00:00
James Petts	98c657231e	IDC-1897 (#1940 ) * show warnings for rt. * Remove unneeded old code	2020-08-05 11:00:47 +02:00
ohif-bot	14da247318	chore(release): publish [skip ci] - @ohif/extension-vtk@1.6.9 - @ohif/ui@1.5.3 - @ohif/viewer@4.2.13	2020-07-23 07:44:17 +00:00
Erik Ziegler	6a77d6c778	chore: Use same config for branch deploys as for deploy previews (#1893 ) (#1916 )	2020-07-23 09:42:42 +02:00
Sinan	8f1785446b	docs: Update readme for end to end test commands (#1774 )	2020-07-22 21:52:23 +02:00
ohif-bot	41225eefc0	chore(release): publish [skip ci] - @ohif/extension-vtk@1.6.8 - @ohif/core@2.9.13 - @ohif/ui@1.5.2 - @ohif/viewer@4.2.12	2020-07-22 19:12:41 +00:00
Erik Ziegler	7772fee21a	fix: Switch DICOMFileUploader to use the UIModalService (#1904 )	2020-07-22 21:10:04 +02:00
ohif-bot	d870ac914a	chore(release): publish [skip ci] - @ohif/extension-cornerstone@2.8.4 - @ohif/extension-dicom-rt@0.2.5 - @ohif/extension-vtk@1.6.7 - @ohif/core@2.9.12 - @ohif/viewer@4.2.11	2020-07-13 16:03:44 +00:00
James Petts	451f7eab92	fix: 🐛 - Put guards in all places that a cornerstone re-render (#1899 ) * fix: 🐛 - Put guards in all places that a cornerstone re-render	2020-07-13 18:02:23 +02:00
ohif-bot	029f8af4c7	chore(release): publish [skip ci] - @ohif/extension-cornerstone@2.8.3 - @ohif/extension-dicom-html@1.2.4 - @ohif/extension-dicom-rt@0.2.4 - @ohif/extension-dicom-segmentation@0.3.3 - @ohif/extension-vtk@1.6.6 - @ohif/core@2.9.11 - @ohif/viewer@4.2.10	2020-07-13 15:37:54 +00:00
James Petts	b1b4c8c861	IDC 1856 - Update dcmjs version to prevent failed naturalization of some DICOM instances. (#1898 ) * fix: 🐛 Fix RT Panel hide/show * Prevent infinite loop by persisting load errors on displaySet. * fix: 🐛 Fix infinite error messages * Fix unit tests. * WIP * fix: 🐛 If no contours for structure, cleanly exit and notify ✅ Closes: #1892 * Update dcmjs to solve issue. * fix: 🐛 Update dcmjs to solve end of file issue	2020-07-13 17:35:55 +02:00
ohif-bot	cdde2af224	chore(release): publish [skip ci] - @ohif/extension-dicom-rt@0.2.3 - @ohif/viewer@4.2.9	2020-07-13 14:30:47 +00:00
James Petts	4a2922dda0	Idc 1892 (#1896 ) * fix: 🐛 Fix RT Panel hide/show * Prevent infinite loop by persisting load errors on displaySet. * fix: 🐛 Fix infinite error messages * Fix unit tests. * WIP * fix: 🐛 If no contours for structure, cleanly exit and notify ✅ Closes: #1892	2020-07-13 16:29:29 +02:00
ohif-bot	b6b5a8414f	chore(release): publish [skip ci] - @ohif/extension-dicom-rt@0.2.2 - @ohif/extension-dicom-segmentation@0.3.2 - @ohif/extension-vtk@1.6.5 - @ohif/core@2.9.10 - @ohif/viewer@4.2.8	2020-07-13 12:53:22 +00:00
James Petts	e7cc735c03	fix: 🐛 Fix RT Panel hide/show and Fix looping load errors (#1877 ) * fix: 🐛 Fix RT Panel hide/show * Prevent infinite loop by persisting load errors on displaySet. * fix: 🐛 Fix infinite error messages * Fix unit tests. * comment out reamining MRSTUDY line	2020-07-13 14:51:33 +02:00
Danny Brown	6121bdcf63	Merge pull request #1828 from Aurelius333/patch-1 Fix README.md Quick Start Deployment instructions	2020-06-30 10:59:20 -04:00
Aurelius333	da70079675	Fix README.md Quick Start Deployment instructions Change `window.OHIFStandaloneViewer` to `window.OHIFViewer`, since the former is undefined	2020-06-29 00:31:45 -04:00
ohif-bot	9089875ca7	chore(release): publish [skip ci] - @ohif/extension-dicom-p10-downloader@0.1.2 - @ohif/viewer@4.2.7	2020-06-18 09:01:18 +00:00
Rodrigo AntinarelliandJames Petts	b4627ecfa3	Feat/1746 idc dev tool (#1778 ) * feat: Create downloadAndUploadStudy method * create upload handler to store instances in another server * refactor and create reusable method to download buffers * fix: e2e studies amount searching by Modality * fix destructuring * fix dataset and log info * split instances to send multiple storeInstances calls * minor refactor progress * fix e2e * replace error message for upload Co-authored-by: James Petts <jamesapetts@gmail.com>	2020-06-18 10:59:07 +02:00
ohif-bot	4ede8a525a	chore(release): publish [skip ci] - @ohif/extension-vtk@1.6.4 - @ohif/core@2.9.9 - @ohif/viewer@4.2.6	2020-06-18 07:28:48 +00:00
Rodrigo Antinarelli	2c23818c86	Fix: #1776 - Segmentations not loading (#1795 ) * temp comments analyze * fix: cache derivedDisplaySets * replace const * minor refactor * fix e2e inconsistent value * increase e2e timeout	2020-06-18 09:24:39 +02:00