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4
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| Author | SHA1 | Date | |
|---|---|---|---|
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9a62c28b3f | ||
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98a649b455 | ||
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3529474a16 | ||
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0c37a406d9 |
No files matched your search
@@ -3,6 +3,17 @@
|
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All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
# [2.3.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.2.2...@ohif/extension-cornerstone@2.3.0) (2020-02-10)
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### Features
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||||
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* 🎸 MeasurementService ([#1314](https://github.com/OHIF/Viewers/issues/1314)) ([0c37a40](https://github.com/OHIF/Viewers/commit/0c37a406d963569af8c3be24c697dafd42712dfc))
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## [2.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.2.1...@ohif/extension-cornerstone@2.2.2) (2020-01-28)
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**Note:** Version bump only for package @ohif/extension-cornerstone
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@@ -0,0 +1 @@
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module.exports = require("../../babel.config.js");
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@@ -0,0 +1,13 @@
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const base = require('../../jest.config.base.js');
|
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const pkg = require('./package');
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||||
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module.exports = {
|
||||
...base,
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name: pkg.name,
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displayName: pkg.name,
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// rootDir: "../.."
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// testMatch: [
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// //`<rootDir>/platform/${pack.name}/**/*.spec.js`
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// "<rootDir>/platform/viewer/**/*.test.js"
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// ]
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};
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@@ -1,6 +1,6 @@
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{
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"name": "@ohif/extension-cornerstone",
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"version": "2.2.2",
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"version": "2.3.0",
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"description": "OHIF extension for Cornerstone",
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"author": "OHIF",
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"license": "MIT",
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||||
@@ -25,7 +25,9 @@
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||||
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
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"build:package": "yarn run build",
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||||
"prepublishOnly": "yarn run build",
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||||
"start": "yarn run dev"
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||||
"start": "yarn run dev",
|
||||
"test:unit": "jest --watchAll",
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||||
"test:unit:ci": "jest --ci --runInBand --collectCoverage"
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||||
},
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"peerDependencies": {
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"@ohif/core": "^0.50.0",
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@@ -5,6 +5,7 @@ import csTools from 'cornerstone-tools';
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import merge from 'lodash.merge';
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import queryString from 'query-string';
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import initCornerstoneTools from './initCornerstoneTools.js';
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import measurementServiceMappingsFactory from './utils/measurementServiceMappings/measurementServiceMappingsFactory';
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function fallbackMetaDataProvider(type, imageId) {
|
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if (!imageId.includes('wado?requestType=WADO')) {
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@@ -17,7 +18,7 @@ function fallbackMetaDataProvider(type, imageId) {
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const wadoRoot = window.store.getState().servers.servers[0].wadoRoot;
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const wadoRsImageId = `wadors:${wadoRoot}/studies/${qs.studyUID}/series/${
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qs.seriesUID
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}/instances/${qs.objectUID}/frames/${qs.frame || 1}`;
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}/instances/${qs.objectUID}/frames/${qs.frame || 1}`;
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return cornerstone.metaData.get(type, wadoRsImageId);
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}
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@@ -32,9 +33,9 @@ cornerstone.metaData.addProvider(fallbackMetaDataProvider, -1);
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* @param {Object|Array} configuration.csToolsConfig
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*/
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export default function init({ servicesManager, configuration }) {
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const callInputDialog = (data, event, callback) => {
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const { UIDialogService } = servicesManager.services;
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const { UIDialogService, MeasurementService } = servicesManager.services;
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const callInputDialog = (data, event, callback) => {
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if (UIDialogService) {
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let dialogId = UIDialogService.create({
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centralize: true,
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@@ -107,6 +108,9 @@ export default function init({ servicesManager, configuration }) {
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||||
tools.push(...toolsGroupedByType[toolsGroup])
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);
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|
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/* Measurement Service */
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||||
_connectToolsToMeasurementService(MeasurementService);
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||||
|
||||
/* Add extension tools configuration here. */
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||||
const internalToolsConfig = {
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ArrowAnnotate: {
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||||
@@ -182,3 +186,111 @@ export default function init({ servicesManager, configuration }) {
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csTools.setToolActive('ZoomTouchPinch', {});
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csTools.setToolEnabled('Overlay', {});
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||||
}
|
||||
|
||||
const _initMeasurementService = measurementService => {
|
||||
/* Initialization */
|
||||
const { toAnnotation, toMeasurement } = measurementServiceMappingsFactory(measurementService);
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const csToolsVer4MeasurementSource = measurementService.createSource(
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||||
'CornerstoneTools',
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||||
'4'
|
||||
);
|
||||
|
||||
/* Matching Criterias */
|
||||
const matchingCriteria = {
|
||||
valueType: measurementService.VALUE_TYPES.POLYLINE,
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points: 2,
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||||
};
|
||||
|
||||
/* Mappings */
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||||
measurementService.addMapping(
|
||||
csToolsVer4MeasurementSource,
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'Length',
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
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||||
|
||||
return csToolsVer4MeasurementSource;
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||||
};
|
||||
|
||||
const _connectToolsToMeasurementService = measurementService => {
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||||
const csToolsVer4MeasurementSource = _initMeasurementService(measurementService);
|
||||
const {
|
||||
id: sourceId,
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addOrUpdate,
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||||
getAnnotation,
|
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} = csToolsVer4MeasurementSource;
|
||||
|
||||
/* Measurement Service Events */
|
||||
cornerstone.events.addEventListener(
|
||||
cornerstone.EVENTS.ELEMENT_ENABLED,
|
||||
event => {
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||||
const {
|
||||
MEASUREMENT_ADDED,
|
||||
MEASUREMENT_UPDATED,
|
||||
} = measurementService.EVENTS;
|
||||
|
||||
measurementService.subscribe(
|
||||
MEASUREMENT_ADDED,
|
||||
({ source, measurement }) => {
|
||||
if (![sourceId].includes(source.id)) {
|
||||
const annotation = getAnnotation('Length', measurement.id);
|
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|
||||
console.log(
|
||||
'Measurement Service [Cornerstone]: Measurement added',
|
||||
measurement
|
||||
);
|
||||
console.log('Mapped annotation:', annotation);
|
||||
}
|
||||
});
|
||||
|
||||
measurementService.subscribe(
|
||||
MEASUREMENT_UPDATED,
|
||||
({ source, measurement }) => {
|
||||
if (![sourceId].includes(source.id)) {
|
||||
const annotation = getAnnotation('Length', measurement.id);
|
||||
|
||||
console.log(
|
||||
'Measurement Service [Cornerstone]: Measurement updated',
|
||||
measurement
|
||||
);
|
||||
console.log('Mapped annotation:', annotation);
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
const addOrUpdateMeasurement = csToolsAnnotation => {
|
||||
try {
|
||||
const { toolName, toolType, measurementData } = csToolsAnnotation;
|
||||
const csTool = toolName || measurementData.toolType || toolType;
|
||||
csToolsAnnotation.id = measurementData._measurementServiceId;
|
||||
const measurementServiceId = addOrUpdate(csTool, csToolsAnnotation);
|
||||
|
||||
if (!measurementData._measurementServiceId) {
|
||||
addMeasurementServiceId(measurementServiceId, csToolsAnnotation);
|
||||
}
|
||||
} catch (error) {
|
||||
console.warn('Failed to add or update measurement:', error);
|
||||
}
|
||||
};
|
||||
|
||||
const addMeasurementServiceId = (id, csToolsAnnotation) => {
|
||||
const { measurementData } = csToolsAnnotation;
|
||||
Object.assign(measurementData, { _measurementServiceId: id });
|
||||
};
|
||||
|
||||
[
|
||||
csTools.EVENTS.MEASUREMENT_ADDED,
|
||||
csTools.EVENTS.MEASUREMENT_MODIFIED,
|
||||
].forEach(csToolsEvtName => {
|
||||
event.detail.element.addEventListener(
|
||||
csToolsEvtName,
|
||||
({ detail: csToolsAnnotation }) => {
|
||||
console.log(`Cornerstone Element Event: ${csToolsEvtName}`);
|
||||
addOrUpdateMeasurement(csToolsAnnotation);
|
||||
}
|
||||
);
|
||||
});
|
||||
}
|
||||
);
|
||||
};
|
||||
+133
@@ -0,0 +1,133 @@
|
||||
import cornerstone from 'cornerstone-core';
|
||||
|
||||
const SUPPORTED_TOOLS = ['Length', 'EllipticalRoi', 'RectangleRoi', 'ArrowAnnotate'];
|
||||
|
||||
const measurementServiceMappingsFactory = measurementService => {
|
||||
/**
|
||||
* Maps measurement service format object to cornerstone annotation object.
|
||||
*
|
||||
* @param {Measurement} measurement The measurement instance
|
||||
* @param {string} definition The source definition
|
||||
* @return {Object} Cornerstone annotation data
|
||||
*/
|
||||
const toAnnotation = (measurement, definition) => {
|
||||
const {
|
||||
id,
|
||||
label,
|
||||
description,
|
||||
points,
|
||||
unit,
|
||||
sopInstanceUID,
|
||||
frameOfReferenceUID,
|
||||
referenceSeriesUID,
|
||||
} = measurement;
|
||||
|
||||
return {
|
||||
toolName: definition,
|
||||
measurementData: {
|
||||
sopInstanceUid: sopInstanceUID,
|
||||
frameOfReferenceUid: frameOfReferenceUID,
|
||||
seriesInstanceUid: referenceSeriesUID,
|
||||
unit,
|
||||
text: label,
|
||||
description,
|
||||
handles: _getHandlesFromPoints(points),
|
||||
_measurementServiceId: id,
|
||||
},
|
||||
};
|
||||
};
|
||||
|
||||
/**
|
||||
* Maps cornerstone annotation event data to measurement service format.
|
||||
*
|
||||
* @param {Object} cornerstone Cornerstone event data
|
||||
* @return {Measurement} Measurement instance
|
||||
*/
|
||||
const toMeasurement = csToolsAnnotation => {
|
||||
const { element, measurementData } = csToolsAnnotation;
|
||||
const tool =
|
||||
csToolsAnnotation.toolType ||
|
||||
csToolsAnnotation.toolName ||
|
||||
measurementData.toolType;
|
||||
|
||||
const validToolType = toolName => SUPPORTED_TOOLS.includes(toolName);
|
||||
|
||||
if (!validToolType(tool)) {
|
||||
throw new Error('Tool not supported');
|
||||
}
|
||||
|
||||
const {
|
||||
sopInstanceUid,
|
||||
frameOfReferenceUid,
|
||||
seriesInstanceUid,
|
||||
} = _getAttributes(element);
|
||||
|
||||
const points = [];
|
||||
points.push(measurementData.handles);
|
||||
|
||||
return {
|
||||
id: measurementData._measurementServiceId,
|
||||
sopInstanceUID: sopInstanceUid,
|
||||
frameOfReferenceUID: frameOfReferenceUid,
|
||||
referenceSeriesUID: seriesInstanceUid,
|
||||
label: measurementData.text,
|
||||
description: measurementData.description,
|
||||
unit: measurementData.unit,
|
||||
area: measurementData.cachedStats && measurementData.cachedStats.area, /* TODO: Add concept names instead (descriptor) */
|
||||
type: _getValueTypeFromToolType(tool),
|
||||
points: _getPointsFromHandles(measurementData.handles),
|
||||
};
|
||||
};
|
||||
|
||||
const _getAttributes = element => {
|
||||
const enabledElement = cornerstone.getEnabledElement(element);
|
||||
const imageId = enabledElement.image.imageId;
|
||||
const sopInstance = cornerstone.metaData.get('instance', imageId);
|
||||
const sopInstanceUid = sopInstance.sopInstanceUid;
|
||||
const frameOfReferenceUid = sopInstance.frameOfReferenceUID;
|
||||
const series = cornerstone.metaData.get('series', imageId);
|
||||
const seriesInstanceUid = series.seriesInstanceUid;
|
||||
|
||||
return { sopInstanceUid, frameOfReferenceUid, seriesInstanceUid };
|
||||
};
|
||||
|
||||
const _getValueTypeFromToolType = toolType => {
|
||||
const { POLYLINE, ELLIPSE, POINT } = measurementService.VALUE_TYPES;
|
||||
|
||||
/* TODO: Relocate static value types */
|
||||
const TOOL_TYPE_TO_VALUE_TYPE = {
|
||||
Length: POLYLINE,
|
||||
EllipticalRoi: ELLIPSE,
|
||||
RectangleRoi: POLYLINE,
|
||||
ArrowAnnotate: POINT,
|
||||
};
|
||||
|
||||
return TOOL_TYPE_TO_VALUE_TYPE[toolType];
|
||||
};
|
||||
|
||||
const _getPointsFromHandles = handles => {
|
||||
let points = [];
|
||||
Object.keys(handles).map(handle => {
|
||||
if (['start', 'end'].includes(handle)) {
|
||||
let point = {};
|
||||
if (handles[handle].x) point.x = handles[handle].x;
|
||||
if (handles[handle].y) point.y = handles[handle].y;
|
||||
points.push(point);
|
||||
}
|
||||
});
|
||||
return points;
|
||||
};
|
||||
|
||||
const _getHandlesFromPoints = points => {
|
||||
return points
|
||||
.map((p, i) => (i % 10 === 0 ? { start: p } : { end: p }))
|
||||
.reduce((obj, item) => Object.assign(obj, { ...item }), {});
|
||||
};
|
||||
|
||||
return {
|
||||
toAnnotation,
|
||||
toMeasurement,
|
||||
};
|
||||
};
|
||||
|
||||
export default measurementServiceMappingsFactory;
|
||||
+80
@@ -0,0 +1,80 @@
|
||||
import measurementServiceMappingsFactory from './measurementServiceMappingsFactory';
|
||||
|
||||
jest.mock('cornerstone-core', () => ({
|
||||
...jest.requireActual('cornerstone-core'),
|
||||
getEnabledElement: () => ({
|
||||
image: { imageId: 123 },
|
||||
}),
|
||||
metaData: {
|
||||
...jest.requireActual('cornerstone-core').metaData,
|
||||
get: () => ({
|
||||
sopInstanceUid: "123",
|
||||
frameOfReferenceUID: "123",
|
||||
seriesInstanceUid: "123",
|
||||
}),
|
||||
},
|
||||
}));
|
||||
|
||||
describe('measurementServiceMappings.js', () => {
|
||||
let mappings;
|
||||
let handles;
|
||||
let points;
|
||||
let csToolsAnnotation;
|
||||
let measurement;
|
||||
let measurementServiceMock;
|
||||
let definition = 'Length';
|
||||
|
||||
beforeEach(() => {
|
||||
measurementServiceMock = {
|
||||
VALUE_TYPES: {
|
||||
POLYLINE: 'value_type::polyline',
|
||||
POINT: 'value_type::point',
|
||||
ELLIPSE: 'value_type::ellipse',
|
||||
MULTIPOINT: 'value_type::multipoint',
|
||||
CIRCLE: 'value_type::circle',
|
||||
},
|
||||
};
|
||||
mappings = measurementServiceMappingsFactory(measurementServiceMock);
|
||||
handles = { start: { x: 1, y: 2 }, end: { x: 1, y: 2 } };
|
||||
points = [{ x: 1, y: 2 }, { x: 1, y: 2 }];
|
||||
csToolsAnnotation = {
|
||||
toolName: definition,
|
||||
measurementData: {
|
||||
_measurementServiceId: 1,
|
||||
sopInstanceUid: '123',
|
||||
frameOfReferenceUid: '123',
|
||||
seriesInstanceUid: '123',
|
||||
handles,
|
||||
text: 'Test',
|
||||
description: 'Test',
|
||||
unit: 'mm',
|
||||
},
|
||||
};
|
||||
measurement = {
|
||||
id: 1,
|
||||
sopInstanceUID: '123',
|
||||
frameOfReferenceUID: '123',
|
||||
referenceSeriesUID: '123',
|
||||
label: 'Test',
|
||||
description: 'Test',
|
||||
unit: 'mm',
|
||||
type: measurementServiceMock.VALUE_TYPES.POLYLINE,
|
||||
points: points,
|
||||
};
|
||||
jest.clearAllMocks();
|
||||
});
|
||||
|
||||
describe('toAnnotation()', () => {
|
||||
it('map measurement service format to annotation', async () => {
|
||||
const mappedMeasurement = await mappings.toAnnotation(measurement, definition);
|
||||
expect(mappedMeasurement).toEqual(csToolsAnnotation);
|
||||
});
|
||||
});
|
||||
|
||||
describe('toMeasurement()', () => {
|
||||
it('map annotation to measurement service format', async () => {
|
||||
const mappedAnnotation = await mappings.toMeasurement(csToolsAnnotation);
|
||||
expect(mappedAnnotation).toEqual(measurement);
|
||||
});
|
||||
});
|
||||
});
|
||||
@@ -3,6 +3,17 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
# [0.2.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-lesion-tracker@0.1.0...@ohif/extension-lesion-tracker@0.2.0) (2020-02-10)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Lesion tracker right panel ([#1428](https://github.com/OHIF/Viewers/issues/1428)) ([98a649b](https://github.com/OHIF/Viewers/commit/98a649b455ffc712938fc5035cdef40695e58440))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# 0.1.0 (2020-02-06)
|
||||
|
||||
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-lesion-tracker",
|
||||
"version": "0.1.0",
|
||||
"version": "0.2.0",
|
||||
"description": "OHIF extension for Lesion Tracker",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -0,0 +1,60 @@
|
||||
.MeasurementComparisonTable {
|
||||
height: 100%;
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
}
|
||||
|
||||
.MeasurementComparisonTable .displayTexts {
|
||||
display: flex;
|
||||
}
|
||||
|
||||
.MeasurementComparisonTable .displayTexts .measurementDisplayText {
|
||||
flex: 1;
|
||||
}
|
||||
|
||||
.MeasurementComparisonTable .measurementTableHeader {
|
||||
display: flex;
|
||||
position: relative;
|
||||
padding-left: 38px;
|
||||
}
|
||||
|
||||
.MeasurementComparisonTable .measurementTableHeader .warning-status {
|
||||
left: 0;
|
||||
top: 3px;
|
||||
cursor: pointer;
|
||||
width: 40px;
|
||||
height: 100%;
|
||||
display: flex;
|
||||
align-items: center;
|
||||
}
|
||||
|
||||
.MeasurementComparisonTable .measurementTableHeader .warning-status .warning-border {
|
||||
padding: 2px 3px;
|
||||
width: 30px;
|
||||
height: 30px;
|
||||
}
|
||||
|
||||
.MeasurementComparisonTable .measurementTableHeader .warning-status svg {
|
||||
width: 20px;
|
||||
height: 18px;
|
||||
}
|
||||
|
||||
.MeasurementComparisonTable .measurementTableHeader .measurementTableHeaderItem {
|
||||
position: relative;
|
||||
flex: 1;
|
||||
}
|
||||
|
||||
.MeasurementComparisonTable .generate-report {
|
||||
background-color: #151a1f;
|
||||
margin-top: 2px;
|
||||
padding: 10px 0;
|
||||
display: flex;
|
||||
justify-content: center;
|
||||
align-items: center;
|
||||
}
|
||||
|
||||
.MeasurementComparisonTable .generate-report button {
|
||||
font-size: 12px;
|
||||
color: black;
|
||||
background-color: var(--active-color);
|
||||
}
|
||||
@@ -0,0 +1,151 @@
|
||||
import React from 'react';
|
||||
|
||||
import { MeasurementTable } from '@ohif/ui';
|
||||
|
||||
import './MeasurementComparisonTable.css';
|
||||
|
||||
const overallWarnings = {
|
||||
warningList: [
|
||||
'All measurements should have a location',
|
||||
'Nodal lesions must be >= 15mm short axis AND >= double the acquisition slice thickness by CT and MR',
|
||||
],
|
||||
};
|
||||
|
||||
const measurements = [
|
||||
{
|
||||
measurementId: '125',
|
||||
measurementNumber: '125',
|
||||
itemNumber: 1,
|
||||
label: '(No description)',
|
||||
data: [{ displayText: '12.5 x 4.6' }],
|
||||
},
|
||||
{
|
||||
measurementId: '124',
|
||||
measurementNumber: '124',
|
||||
itemNumber: 2,
|
||||
label: '(No description)',
|
||||
data: [{ displayText: '32.5 x 1.6' }],
|
||||
},
|
||||
{
|
||||
measurementId: '123',
|
||||
measurementNumber: '123',
|
||||
itemNumber: 3,
|
||||
hasWarnings: true,
|
||||
warningList: [
|
||||
'All measurements should have a location',
|
||||
'Nodal lesions must be >= 15mm short axis AND >= double the acquisition slice thickness by CT and MR',
|
||||
],
|
||||
label: '(No description)',
|
||||
data: [{ displayText: '5.5 x 9.2' }],
|
||||
},
|
||||
];
|
||||
|
||||
const additionalFindings = [
|
||||
{
|
||||
measurementId: '122',
|
||||
measurementNumber: '122',
|
||||
itemNumber: 1,
|
||||
hasWarnings: true,
|
||||
warningList: [
|
||||
'All measurements should have a location',
|
||||
'Nodal lesions must be >= 15mm short axis AND >= double the acquisition slice thickness by CT and MR',
|
||||
],
|
||||
label: '(No description)',
|
||||
data: [{ displayText: '23.5 x 9.2' }],
|
||||
},
|
||||
{
|
||||
measurementId: '121',
|
||||
measurementNumber: '121',
|
||||
itemNumber: 2,
|
||||
hasWarnings: true,
|
||||
warningList: [
|
||||
'All measurements should have a location',
|
||||
'Nodal lesions must be >= 15mm short axis AND >= double the acquisition slice thickness by CT and MR',
|
||||
],
|
||||
label: '(No description)',
|
||||
data: [{ displayText: '11.2 x 9.2' }],
|
||||
},
|
||||
{
|
||||
measurementId: '120',
|
||||
measurementNumber: '120',
|
||||
itemNumber: 3,
|
||||
label: '(No description)',
|
||||
data: [{ displayText: '2.9 x 9.2' }],
|
||||
},
|
||||
];
|
||||
|
||||
const currentCollections = [
|
||||
{
|
||||
selectorAction: () => { },
|
||||
maxMeasurements: 3,
|
||||
groupName: 'Measurements',
|
||||
measurements: measurements,
|
||||
},
|
||||
{
|
||||
selectorAction: () => { },
|
||||
groupName: 'Additional Findings',
|
||||
measurements: additionalFindings,
|
||||
},
|
||||
];
|
||||
|
||||
const comparisonColletions = [
|
||||
{
|
||||
selectorAction: () => { },
|
||||
maxMeasurements: 3,
|
||||
groupName: 'Measurements',
|
||||
measurements: measurements,
|
||||
},
|
||||
{
|
||||
selectorAction: () => { },
|
||||
groupName: 'Additional Findings',
|
||||
measurements: additionalFindings,
|
||||
},
|
||||
];
|
||||
|
||||
const comparisonCollections = currentCollections.map((group, index) => {
|
||||
return {
|
||||
...group,
|
||||
measurements: group.measurements.map((measurement, measurementIndex) => {
|
||||
const comparisonCollection = comparisonColletions[index].measurements;
|
||||
if (measurementIndex < comparisonCollection.length) {
|
||||
return {
|
||||
...measurement,
|
||||
data: [
|
||||
...measurement.data,
|
||||
...comparisonCollection[measurementIndex].data,
|
||||
],
|
||||
};
|
||||
}
|
||||
}),
|
||||
};
|
||||
});
|
||||
|
||||
const comparisonTimepoints = [
|
||||
{
|
||||
key: 'Current',
|
||||
date: '10-Apr-18',
|
||||
},
|
||||
{
|
||||
key: 'Comparison',
|
||||
date: '15-Jun-18',
|
||||
}
|
||||
];
|
||||
|
||||
const MeasurementComparisonTable = () => {
|
||||
return (
|
||||
<div className="MeasurementComparisonTable">
|
||||
<MeasurementTable
|
||||
timepoints={comparisonTimepoints}
|
||||
overallWarnings={overallWarnings}
|
||||
measurementCollection={comparisonCollections}
|
||||
onRelabelClick={() => { }}
|
||||
onEditDescriptionClick={() => { }}
|
||||
/>
|
||||
<div className="generate-report">
|
||||
<button className="btn btn-primary">Generate Report</button>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
export default MeasurementComparisonTable;
|
||||
@@ -1,12 +1,4 @@
|
||||
// SEE: Async imports (code-splitting)
|
||||
// import asyncComponent from './asyncComponent.js';
|
||||
// import OHIFDicomPDFSopClassHandler from './OHIFDicomPDFSopClassHandler.js';
|
||||
|
||||
// const ConnectedOHIFDicomPDFViewer = asyncComponent(() =>
|
||||
// import(
|
||||
// /* webpackChunkName: "ConnectedOHIFDicomPDFViewer" */ './ConnectedOHIFDicomPDFViewer'
|
||||
// )
|
||||
// );
|
||||
import MeasurementComparisonTable from './components/MeasurementComparisonTable';
|
||||
|
||||
export default {
|
||||
/**
|
||||
@@ -20,56 +12,21 @@ export default {
|
||||
* @param {CommandsManager} params.commandsManager
|
||||
*/
|
||||
getPanelModule({ servicesManager, commandsManager }) {
|
||||
return undefined;
|
||||
// {
|
||||
// TODO:
|
||||
// - Right, alternative StudyBrowser
|
||||
// - Left, alternative Measurements Table
|
||||
// menuOptions: [
|
||||
// {
|
||||
// // A suggested icon
|
||||
// // Available icons determined by consuming app
|
||||
// icon: 'list',
|
||||
// // A suggested label
|
||||
// label: 'Magic',
|
||||
// // 'right' or 'left'
|
||||
// from: 'right',
|
||||
// // The target component to toggle open/close
|
||||
// target: 'target-component-id',
|
||||
// // Overrides `defaultContext`, if specified
|
||||
// context: ['ACTIVE_VIEWPORT:MAGIC'],
|
||||
// },
|
||||
// ],
|
||||
// components: [
|
||||
// {
|
||||
// id: 'target-component-id',
|
||||
// component: MyComponent,
|
||||
// },
|
||||
// ],
|
||||
// defaultContext: ['ROUTE:VIEWER'],
|
||||
// };
|
||||
},
|
||||
|
||||
/**
|
||||
* @param {object} params
|
||||
* @param {ServicesManager} params.servicesManager
|
||||
* @param {CommandsManager} params.commandsManager
|
||||
* @returns Object
|
||||
*/
|
||||
getToolbarModule({ servicesManager, commandsManager }) {
|
||||
// TODO: Zoom, Levels, Pan, More (see lesiontracker.ohif.org)
|
||||
// These may be driven through configuration of `cornerstone` extension instead of defined here
|
||||
return {
|
||||
definitions: [
|
||||
menuOptions: [
|
||||
{
|
||||
id: 'say-hell-world',
|
||||
label: '🎉 HELLO WORLD 🎉',
|
||||
icon: 'exclamation-triangle',
|
||||
type: 'command',
|
||||
commandName: 'sayHelloWorld',
|
||||
icon: 'th-list',
|
||||
label: 'Measurements',
|
||||
target: 'lesion-tracker-panel',
|
||||
},
|
||||
],
|
||||
defaultContext: 'VIEWER',
|
||||
components: [
|
||||
{
|
||||
id: 'lesion-tracker-panel',
|
||||
component: MeasurementComparisonTable,
|
||||
},
|
||||
],
|
||||
defaultContext: ['VIEWER']
|
||||
};
|
||||
},
|
||||
|
||||
@@ -79,23 +36,17 @@ export default {
|
||||
* @param {CommandsManager} params.commandsManager
|
||||
* @returns Object
|
||||
*/
|
||||
getCommandsModule({ servicesManager }) {
|
||||
const { UINotificationService } = servicesManager.services;
|
||||
return {
|
||||
definitions: {
|
||||
sayHelloWorld: {
|
||||
commandFn: function() {
|
||||
console.log(UINotificationService);
|
||||
UINotificationService.show({
|
||||
title: 'What does a nosey pepper do?',
|
||||
message: 'Gets jalapeno business!',
|
||||
});
|
||||
},
|
||||
storeContexts: [],
|
||||
options: {},
|
||||
},
|
||||
},
|
||||
defaultContext: ['VIEWER'],
|
||||
};
|
||||
getToolbarModule() {
|
||||
return null;
|
||||
},
|
||||
|
||||
/**
|
||||
* @param {object} params
|
||||
* @param {ServicesManager} params.servicesManager
|
||||
* @param {CommandsManager} params.commandsManager
|
||||
* @returns Object
|
||||
*/
|
||||
getCommandsModule() {
|
||||
return null;
|
||||
},
|
||||
};
|
||||
@@ -3,6 +3,22 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.2.17](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.2.16...@ohif/extension-vtk@1.2.17) (2020-02-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.2.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.2.15...@ohif/extension-vtk@1.2.16) (2020-02-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.2.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.2.14...@ohif/extension-vtk@1.2.15) (2020-02-07)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-vtk",
|
||||
"version": "1.2.15",
|
||||
"version": "1.2.17",
|
||||
"description": "OHIF extension for VTK.js",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -52,8 +52,8 @@
|
||||
"react-vtkjs-viewport": "^0.8.3"
|
||||
},
|
||||
"devDependencies": {
|
||||
"@ohif/core": "^2.3.9",
|
||||
"@ohif/ui": "^1.1.9",
|
||||
"@ohif/core": "^2.4.0",
|
||||
"@ohif/ui": "^1.2.0",
|
||||
"cornerstone-tools": "^4.12.0",
|
||||
"cornerstone-wado-image-loader": "^3.0.0",
|
||||
"dicom-parser": "^1.8.3",
|
||||
|
||||
+2
-1
@@ -10,7 +10,8 @@ module.exports = {
|
||||
// https://jestjs.io/docs/en/configuration#projects-array-string-projectconfig
|
||||
projects: [
|
||||
// "<rootDir>/extensions/*/jest.config.js",
|
||||
"<rootDir>/platform/*/jest.config.js"
|
||||
"<rootDir>/platform/*/jest.config.js",
|
||||
"<rootDir>/extensions/*/jest.config.js"
|
||||
],
|
||||
coverageDirectory: "<rootDir>/coverage/"
|
||||
};
|
||||
@@ -3,6 +3,17 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
# [2.4.0](https://github.com/OHIF/Viewers/compare/@ohif/core@2.3.9...@ohif/core@2.4.0) (2020-02-10)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 MeasurementService ([#1314](https://github.com/OHIF/Viewers/issues/1314)) ([0c37a40](https://github.com/OHIF/Viewers/commit/0c37a406d963569af8c3be24c697dafd42712dfc))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.3.9](https://github.com/OHIF/Viewers/compare/@ohif/core@2.3.8...@ohif/core@2.3.9) (2020-02-07)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/core",
|
||||
"version": "2.3.9",
|
||||
"version": "2.4.0",
|
||||
"description": "Generic business logic for web-based medical imaging applications",
|
||||
"author": "OHIF Core Team",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -24,6 +24,7 @@ import {
|
||||
UINotificationService,
|
||||
UIModalService,
|
||||
UIDialogService,
|
||||
MeasurementService,
|
||||
} from './services';
|
||||
|
||||
const OHIF = {
|
||||
@@ -55,6 +56,7 @@ const OHIF = {
|
||||
UINotificationService,
|
||||
UIModalService,
|
||||
UIDialogService,
|
||||
MeasurementService,
|
||||
};
|
||||
|
||||
export {
|
||||
@@ -85,6 +87,7 @@ export {
|
||||
UINotificationService,
|
||||
UIModalService,
|
||||
UIDialogService,
|
||||
MeasurementService,
|
||||
};
|
||||
|
||||
export { OHIF };
|
||||
|
||||
@@ -13,6 +13,7 @@ describe('Top level exports', () => {
|
||||
'UINotificationService',
|
||||
'UIModalService',
|
||||
'UIDialogService',
|
||||
'MeasurementService',
|
||||
//
|
||||
'utils',
|
||||
'studies',
|
||||
|
||||
@@ -0,0 +1,481 @@
|
||||
import log from '../../log';
|
||||
import guid from '../../utils/guid';
|
||||
|
||||
/**
|
||||
* Measurement source schema
|
||||
*
|
||||
* @typedef {Object} MeasurementSource
|
||||
* @property {number} id -
|
||||
* @property {string} name -
|
||||
* @property {string} version -
|
||||
*/
|
||||
|
||||
/**
|
||||
* Measurement schema
|
||||
*
|
||||
* @typedef {Object} Measurement
|
||||
* @property {number} id -
|
||||
* @property {string} sopInstanceUID -
|
||||
* @property {string} frameOfReferenceUID -
|
||||
* @property {string} referenceSeriesUID -
|
||||
* @property {string} label -
|
||||
* @property {string} description -
|
||||
* @property {string} type -
|
||||
* @property {string} unit -
|
||||
* @property {number} area -
|
||||
* @property {Array} points -
|
||||
* @property {MeasurementSource} source -
|
||||
*/
|
||||
|
||||
/* Measurement schema keys for object validation. */
|
||||
const MEASUREMENT_SCHEMA_KEYS = [
|
||||
'id',
|
||||
'sopInstanceUID',
|
||||
'frameOfReferenceUID',
|
||||
'referenceSeriesUID',
|
||||
'label',
|
||||
'description',
|
||||
'type',
|
||||
'unit',
|
||||
'area', // TODO: Add concept names instead (descriptor)
|
||||
'points',
|
||||
'source',
|
||||
];
|
||||
|
||||
const EVENTS = {
|
||||
MEASUREMENT_UPDATED: 'event::measurement_updated',
|
||||
MEASUREMENT_ADDED: 'event::measurement_added',
|
||||
};
|
||||
|
||||
const VALUE_TYPES = {
|
||||
POLYLINE: 'value_type::polyline',
|
||||
POINT: 'value_type::point',
|
||||
ELLIPSE: 'value_type::ellipse',
|
||||
MULTIPOINT: 'value_type::multipoint',
|
||||
CIRCLE: 'value_type::circle',
|
||||
};
|
||||
|
||||
class MeasurementService {
|
||||
constructor() {
|
||||
this.sources = {};
|
||||
this.mappings = {};
|
||||
this.measurements = {};
|
||||
this.listeners = {};
|
||||
Object.defineProperty(this, 'EVENTS', {
|
||||
value: EVENTS,
|
||||
writable: false,
|
||||
enumerable: true,
|
||||
configurable: false,
|
||||
});
|
||||
Object.defineProperty(this, 'VALUE_TYPES', {
|
||||
value: VALUE_TYPES,
|
||||
writable: false,
|
||||
enumerable: true,
|
||||
configurable: false,
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Get all measurements.
|
||||
*
|
||||
* @return {Measurement[]} Array of measurements
|
||||
*/
|
||||
getMeasurements() {
|
||||
const measurements = this._arrayOfObjects(this.measurements);
|
||||
return (
|
||||
measurements &&
|
||||
measurements.map(m => this.measurements[Object.keys(m)[0]])
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Get specific measurement by its id.
|
||||
*
|
||||
* @param {string} id If of the measurement
|
||||
* @return {Measurement} Measurement instance
|
||||
*/
|
||||
getMeasurement(id) {
|
||||
let measurement = null;
|
||||
const measurements = this.measurements[id];
|
||||
|
||||
if (measurements && Object.keys(measurements).length > 0) {
|
||||
measurement = this.measurements[id];
|
||||
}
|
||||
|
||||
return measurement;
|
||||
}
|
||||
|
||||
/**
|
||||
* Create a new source.
|
||||
*
|
||||
* @param {string} name Name of the source
|
||||
* @param {string} version Source name
|
||||
* @return {MeasurementSource} Measurement source instance
|
||||
*/
|
||||
createSource(name, version) {
|
||||
if (!name) {
|
||||
log.warn('Source name not provided. Exiting early.');
|
||||
return;
|
||||
}
|
||||
|
||||
if (!version) {
|
||||
log.warn('Source version not provided. Exiting early.');
|
||||
return;
|
||||
}
|
||||
|
||||
const id = guid();
|
||||
const source = {
|
||||
id,
|
||||
name,
|
||||
version,
|
||||
};
|
||||
source.addOrUpdate = (definition, measurement) => {
|
||||
return this.addOrUpdate(source, definition, measurement);
|
||||
};
|
||||
source.getAnnotation = (definition, measurementId) => {
|
||||
return this.getAnnotation(source, definition, measurementId);
|
||||
};
|
||||
|
||||
log.info(`New '${name}@${version}' source added.`);
|
||||
this.sources[id] = source;
|
||||
|
||||
return source;
|
||||
}
|
||||
|
||||
/**
|
||||
* Add a new measurement matching criteria along with mapping functions.
|
||||
*
|
||||
* @param {MeasurementSource} source Measurement source instance
|
||||
* @param {string} definition Definition of the measurement (Annotation Type)
|
||||
* @param {MatchingCriteria} matchingCriteria The matching criteria
|
||||
* @param {Function} toSourceSchema Mapping function to source schema
|
||||
* @param {Function} toMeasurementSchema Mapping function to measurement schema
|
||||
* @return void
|
||||
*/
|
||||
addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toSourceSchema,
|
||||
toMeasurementSchema
|
||||
) {
|
||||
if (!this._isValidSource(source)) {
|
||||
log.warn('Invalid source. Exiting early.');
|
||||
return;
|
||||
}
|
||||
|
||||
if (!matchingCriteria) {
|
||||
log.warn('Matching criteria not provided. Exiting early.');
|
||||
return;
|
||||
}
|
||||
|
||||
if (!definition) {
|
||||
log.warn('Definition not provided. Exiting early.');
|
||||
return;
|
||||
}
|
||||
|
||||
if (!toSourceSchema) {
|
||||
log.warn('Source mapping function not provided. Exiting early.');
|
||||
return;
|
||||
}
|
||||
|
||||
if (!toMeasurementSchema) {
|
||||
log.warn('Measurement mapping function not provided. Exiting early.');
|
||||
return;
|
||||
}
|
||||
|
||||
const mapping = {
|
||||
matchingCriteria,
|
||||
definition,
|
||||
toSourceSchema,
|
||||
toMeasurementSchema,
|
||||
};
|
||||
|
||||
if (Array.isArray(this.mappings[source.id])) {
|
||||
this.mappings[source.id].push(mapping);
|
||||
} else {
|
||||
this.mappings[source.id] = [mapping];
|
||||
}
|
||||
|
||||
log.info(`New measurement mapping added to source '${this._getSourceInfo(source)}'.`);
|
||||
}
|
||||
|
||||
/**
|
||||
* Get annotation for specific source.
|
||||
*
|
||||
* @param {MeasurementSource} source Measurement source instance
|
||||
* @param {string} definition The source definition
|
||||
* @param {string} measurementId The measurement service measurement id
|
||||
* @return {Object} Source measurement schema
|
||||
*/
|
||||
getAnnotation(source, definition, measurementId) {
|
||||
if (!this._isValidSource(source)) {
|
||||
log.warn('Invalid source. Exiting early.');
|
||||
return;
|
||||
}
|
||||
|
||||
if (!definition) {
|
||||
log.warn('No source definition provided. Exiting early.');
|
||||
return;
|
||||
}
|
||||
|
||||
const mapping = this._getMappingByMeasurementSource(measurementId, definition);
|
||||
if (mapping) return mapping.toSourceSchema(measurement, definition);
|
||||
|
||||
const measurement = this.getMeasurement(measurementId);
|
||||
const matchingMapping = this._getMatchingMapping(source, definition, measurement);
|
||||
|
||||
if (matchingMapping) {
|
||||
log.info('Matching mapping found:', matchingMapping);
|
||||
const { toSourceSchema, definition } = matchingMapping;
|
||||
return toSourceSchema(measurement, definition);
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Adds or update persisted measurements.
|
||||
*
|
||||
* @param {MeasurementSource} source The measurement source instance
|
||||
* @param {string} definition The source definition
|
||||
* @param {Measurement} measurement The source measurement
|
||||
* @return {string} A measurement id
|
||||
*/
|
||||
addOrUpdate(source, definition, sourceMeasurement) {
|
||||
if (!this._isValidSource(source)) {
|
||||
log.warn('Invalid source. Exiting early.');
|
||||
return;
|
||||
}
|
||||
|
||||
const sourceInfo = this._getSourceInfo(source);
|
||||
|
||||
if (!definition) {
|
||||
log.warn('No source definition provided. Exiting early.');
|
||||
return;
|
||||
}
|
||||
|
||||
if (!this._sourceHasMappings(source)) {
|
||||
log.warn(`No measurement mappings found for '${sourceInfo}' source. Exiting early.`);
|
||||
return;
|
||||
}
|
||||
|
||||
let measurement = {};
|
||||
try {
|
||||
const sourceMappings = this.mappings[source.id];
|
||||
const { toMeasurementSchema } = sourceMappings.find(
|
||||
mapping => mapping.definition === definition
|
||||
);
|
||||
|
||||
/* Convert measurement */
|
||||
measurement = toMeasurementSchema(sourceMeasurement);
|
||||
|
||||
/* Assign measurement source instance */
|
||||
measurement.source = source;
|
||||
} catch (error) {
|
||||
log.error(`Failed to map '${sourceInfo}' measurement for definition ${definition}:`, error.message);
|
||||
return;
|
||||
}
|
||||
|
||||
if (!this._isValidMeasurement(measurement)) {
|
||||
log.warn(
|
||||
`Attempting to add or update a invalid measurement provided by '${sourceInfo}'. Exiting early.`
|
||||
);
|
||||
return;
|
||||
}
|
||||
|
||||
let internalId = sourceMeasurement.id;
|
||||
if (!internalId) {
|
||||
internalId = guid();
|
||||
log.warn(`Measurement ID not found. Generating UID: ${internalId}`);
|
||||
}
|
||||
|
||||
const newMeasurement = {
|
||||
...measurement,
|
||||
modifiedTimestamp: Math.floor(Date.now() / 1000),
|
||||
id: internalId,
|
||||
};
|
||||
|
||||
if (this.measurements[internalId]) {
|
||||
log.info(`Measurement already defined. Updating measurement.`, newMeasurement);
|
||||
this.measurements[internalId] = newMeasurement;
|
||||
this._broadcastChange(this.EVENTS.MEASUREMENT_UPDATED, source, newMeasurement);
|
||||
} else {
|
||||
log.info(`Measurement added.`, newMeasurement);
|
||||
this.measurements[internalId] = newMeasurement;
|
||||
this._broadcastChange(this.EVENTS.MEASUREMENT_ADDED, source, newMeasurement);
|
||||
}
|
||||
|
||||
return newMeasurement.id;
|
||||
}
|
||||
|
||||
/**
|
||||
* Subscribe to measurement updates.
|
||||
*
|
||||
* @param {string} eventName The name of the event
|
||||
* @param {Function} callback Events callback
|
||||
* @return {Object} Observable object with actions
|
||||
*/
|
||||
subscribe(eventName, callback) {
|
||||
if (this._isValidEvent(eventName)) {
|
||||
const listenerId = guid();
|
||||
const subscription = { id: listenerId, callback };
|
||||
|
||||
console.info(`Subscribing to '${eventName}'.`);
|
||||
if (Array.isArray(this.listeners[eventName])) {
|
||||
this.listeners[eventName].push(subscription);
|
||||
} else {
|
||||
this.listeners[eventName] = [subscription];
|
||||
}
|
||||
|
||||
return {
|
||||
unsubscribe: () => this._unsubscribe(eventName, listenerId),
|
||||
};
|
||||
} else {
|
||||
throw new Error(`Event ${eventName} not supported.`);
|
||||
}
|
||||
}
|
||||
|
||||
_getMappingByMeasurementSource(measurementId, definition) {
|
||||
const measurement = this.getMeasurement(measurementId);
|
||||
if (this._isValidSource(measurement.source)) {
|
||||
return this.mappings[measurement.source.id].find(
|
||||
m => m.definition === definition
|
||||
);
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Get measurement mapping function if matching criteria.
|
||||
*
|
||||
* @param {MeasurementSource} source Measurement source instance
|
||||
* @param {string} definition The source definition
|
||||
* @param {string} measurement The measurement serice measurement
|
||||
* @return {Object} The mapping based on matched criteria
|
||||
*/
|
||||
_getMatchingMapping(source, definition, measurement) {
|
||||
const sourceMappings = this.mappings[source.id];
|
||||
|
||||
const sourceMappingsByDefinition = sourceMappings.filter(
|
||||
mapping => mapping.definition === definition
|
||||
);
|
||||
|
||||
/* Criteria Matching */
|
||||
return sourceMappingsByDefinition.find(({ matchingCriteria }) => {
|
||||
return (
|
||||
measurement.points &&
|
||||
measurement.points.length === matchingCriteria.points
|
||||
);
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns formatted string with source info.
|
||||
*
|
||||
* @param {MeasurementSource} source Measurement source
|
||||
* @return {string} Source information
|
||||
*/
|
||||
_getSourceInfo(source) {
|
||||
return `${source.name}@${source.version}`;
|
||||
}
|
||||
|
||||
/**
|
||||
* Checks if given source is valid.
|
||||
*
|
||||
* @param {MeasurementSource} source Measurement source
|
||||
* @return {boolean} Measurement source validation
|
||||
*/
|
||||
_isValidSource(source) {
|
||||
return source && this.sources[source.id];
|
||||
}
|
||||
|
||||
/**
|
||||
* Checks if a given source has mappings.
|
||||
*
|
||||
* @param {MeasurementSource} source The measurement source
|
||||
* @return {boolean} Validation if source has mappings
|
||||
*/
|
||||
_sourceHasMappings(source) {
|
||||
return (
|
||||
Array.isArray(this.mappings[source.id]) && this.mappings[source.id].length
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Broadcasts measurement changes.
|
||||
*
|
||||
* @param {string} measurementId The measurement id
|
||||
* @param {MeasurementSource} source The measurement source
|
||||
* @param {string} eventName The event name
|
||||
* @return void
|
||||
*/
|
||||
_broadcastChange(eventName, source, measurement) {
|
||||
const hasListeners = Object.keys(this.listeners).length > 0;
|
||||
const hasCallbacks = Array.isArray(this.listeners[eventName]);
|
||||
|
||||
if (hasListeners && hasCallbacks) {
|
||||
this.listeners[eventName].forEach(listener => {
|
||||
listener.callback({ source, measurement });
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Unsubscribe to measurement updates.
|
||||
*
|
||||
* @param {string} eventName The name of the event
|
||||
* @param {string} listenerId The listeners id
|
||||
* @return void
|
||||
*/
|
||||
_unsubscribe(eventName, listenerId) {
|
||||
if (!this.listeners[eventName]) {
|
||||
return;
|
||||
}
|
||||
|
||||
const listeners = this.listeners[eventName];
|
||||
if (Array.isArray(listeners)) {
|
||||
this.listeners[eventName] = listeners.filter(
|
||||
({ id }) => id !== listenerId
|
||||
);
|
||||
} else {
|
||||
this.listeners[eventName] = undefined;
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Check if a given measurement data is valid.
|
||||
*
|
||||
* @param {Measurement} measurementData Measurement data
|
||||
* @return {boolean} Measurement validation
|
||||
*/
|
||||
_isValidMeasurement(measurementData) {
|
||||
Object.keys(measurementData).forEach(key => {
|
||||
if (!MEASUREMENT_SCHEMA_KEYS.includes(key)) {
|
||||
log.warn(`Invalid measurement key: ${key}`);
|
||||
return false;
|
||||
}
|
||||
});
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
/**
|
||||
* Check if a given measurement service event is valid.
|
||||
*
|
||||
* @param {string} eventName The name of the event
|
||||
* @return {boolean} Event name validation
|
||||
*/
|
||||
_isValidEvent(eventName) {
|
||||
return Object.values(this.EVENTS).includes(eventName);
|
||||
}
|
||||
|
||||
/**
|
||||
* Converts object of objects to array.
|
||||
*
|
||||
* @return {Array} Array of objects
|
||||
*/
|
||||
_arrayOfObjects = obj => {
|
||||
return Object.entries(obj).map(e => ({ [e[0]]: e[1] }));
|
||||
};
|
||||
}
|
||||
|
||||
export default MeasurementService;
|
||||
export { EVENTS, VALUE_TYPES };
|
||||
@@ -0,0 +1,405 @@
|
||||
import MeasurementService from './MeasurementService.js';
|
||||
import log from '../../log';
|
||||
|
||||
jest.mock('../../log.js', () => ({
|
||||
info: jest.fn(),
|
||||
warn: jest.fn(),
|
||||
error: jest.fn(),
|
||||
}));
|
||||
|
||||
describe('MeasurementService.js', () => {
|
||||
let measurementService;
|
||||
let measurement;
|
||||
let source;
|
||||
let definition;
|
||||
let matchingCriteria;
|
||||
let toAnnotation;
|
||||
let toMeasurement;
|
||||
let annotation;
|
||||
|
||||
beforeEach(() => {
|
||||
measurementService = new MeasurementService();
|
||||
source = measurementService.createSource('Test', '1');
|
||||
definition = 'Length';
|
||||
annotation = {
|
||||
toolName: definition,
|
||||
measurementData: {},
|
||||
};
|
||||
measurement = {
|
||||
sopInstanceUID: '123',
|
||||
frameOfReferenceUID: '1234',
|
||||
referenceSeriesUID: '12345',
|
||||
label: 'Label',
|
||||
description: 'Description',
|
||||
unit: 'mm',
|
||||
area: 123,
|
||||
type: measurementService.VALUE_TYPES.POLYLINE,
|
||||
points: [{ x: 1, y: 2 }, { x: 1, y: 2 }],
|
||||
source: source,
|
||||
};
|
||||
toAnnotation = () => annotation;
|
||||
toMeasurement = () => measurement;
|
||||
matchingCriteria = {
|
||||
valueType: measurementService.VALUE_TYPES.POLYLINE,
|
||||
points: 2,
|
||||
};
|
||||
log.warn.mockClear();
|
||||
jest.clearAllMocks();
|
||||
});
|
||||
|
||||
describe('createSource()', () => {
|
||||
it('creates new source with name and version', () => {
|
||||
measurementService.createSource('Testing', '1');
|
||||
});
|
||||
|
||||
it('logs warning and return early if no name provided', () => {
|
||||
measurementService.createSource(null, '1');
|
||||
|
||||
expect(log.warn.mock.calls.length).toBe(1);
|
||||
});
|
||||
|
||||
it('logs warning and return early if no version provided', () => {
|
||||
measurementService.createSource('Testing', null);
|
||||
|
||||
expect(log.warn.mock.calls.length).toBe(1);
|
||||
});
|
||||
});
|
||||
|
||||
describe('addMapping()', () => {
|
||||
it('adds new mapping', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
});
|
||||
|
||||
it('logs warning and return early if no matching criteria provided', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
null,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
expect(log.warn.mock.calls.length).toBe(1);
|
||||
});
|
||||
|
||||
it('logs warning and return early if invalid source provided', () => {
|
||||
const invalidSoure = {};
|
||||
|
||||
measurementService.addMapping(
|
||||
invalidSoure,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
expect(log.warn.mock.calls.length).toBe(1);
|
||||
});
|
||||
|
||||
it('logs warning and return early if no source provided', () => {
|
||||
measurementService.addMapping(
|
||||
null /* source */,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
expect(log.warn.mock.calls.length).toBe(1);
|
||||
});
|
||||
|
||||
it('logs warning and return early if no definition provided', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
null /* definition */,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
expect(log.warn.mock.calls.length).toBe(1);
|
||||
});
|
||||
|
||||
it('logs warning and return early if no measurement mapping function provided', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
null /* toAnnotation */,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
expect(log.warn.mock.calls.length).toBe(1);
|
||||
});
|
||||
|
||||
it('logs warning and return early if no annotation mapping function provided', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
null /* toMeasurement */
|
||||
);
|
||||
|
||||
expect(log.warn.mock.calls.length).toBe(1);
|
||||
});
|
||||
});
|
||||
|
||||
describe('getAnnotation()', () => {
|
||||
it('get annotation based on matched criteria', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
const measurementId = source.addOrUpdate(definition, annotation);
|
||||
const mappedAnnotation = source.getAnnotation(definition, measurementId);
|
||||
|
||||
expect(annotation).toBe(mappedAnnotation);
|
||||
});
|
||||
|
||||
it('get annotation based on source and definition', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
{},
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
const measurementId = source.addOrUpdate(definition, annotation);
|
||||
const mappedAnnotation = source.getAnnotation(definition, measurementId);
|
||||
|
||||
expect(annotation).toBe(mappedAnnotation);
|
||||
});
|
||||
});
|
||||
|
||||
describe('getMeasurements()', () => {
|
||||
it('return all measurement service measurements', () => {
|
||||
const anotherMeasurement = {
|
||||
...measurement,
|
||||
label: 'Label2',
|
||||
unit: 'HU',
|
||||
};
|
||||
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
source.addOrUpdate(definition, measurement);
|
||||
source.addOrUpdate(definition, anotherMeasurement);
|
||||
|
||||
const measurements = measurementService.getMeasurements();
|
||||
|
||||
expect(measurements.length).toEqual(2);
|
||||
expect(measurements.length).toEqual(2);
|
||||
});
|
||||
});
|
||||
|
||||
describe('getMeasurement()', () => {
|
||||
it('return measurement service measurement with given id', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
const id = source.addOrUpdate(definition, measurement);
|
||||
const returnedMeasurement = measurementService.getMeasurement(id);
|
||||
|
||||
/* Clear dynamic data */
|
||||
delete returnedMeasurement.modifiedTimestamp;
|
||||
|
||||
expect({ id, ...measurement }).toEqual(returnedMeasurement);
|
||||
});
|
||||
});
|
||||
|
||||
describe('addOrUpdate()', () => {
|
||||
it('adds new measurements', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
source.addOrUpdate(definition, measurement);
|
||||
source.addOrUpdate(definition, measurement);
|
||||
|
||||
const measurements = measurementService.getMeasurements();
|
||||
|
||||
expect(measurements.length).toBe(2);
|
||||
});
|
||||
|
||||
it('fails to add new measurements when no mapping', () => {
|
||||
source.addOrUpdate(definition, measurement);
|
||||
|
||||
expect(log.warn.mock.calls.length).toBe(1);
|
||||
});
|
||||
|
||||
it('fails to add new measurements when invalid mapping function', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
1 /* Invalid */
|
||||
);
|
||||
|
||||
source.addOrUpdate(definition, measurement);
|
||||
|
||||
expect(log.error.mock.calls.length).toBe(1);
|
||||
});
|
||||
|
||||
it('adds new measurement with custom id', () => {
|
||||
const newMeasurement = { id: 1, ...measurement };
|
||||
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
/* Add new measurement */
|
||||
source.addOrUpdate(definition, newMeasurement);
|
||||
const savedMeasurement = measurementService.getMeasurement(newMeasurement.id);
|
||||
|
||||
/* Clear dynamic data */
|
||||
delete newMeasurement.modifiedTimestamp;
|
||||
delete savedMeasurement.modifiedTimestamp;
|
||||
|
||||
expect(newMeasurement).toEqual(savedMeasurement);
|
||||
});
|
||||
|
||||
it('logs warning and return if adding invalid measurement', () => {
|
||||
measurement.invalidProperty = {};
|
||||
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
source.addOrUpdate(definition, measurement);
|
||||
|
||||
expect(log.warn.mock.calls.length).toBe(2);
|
||||
});
|
||||
|
||||
it('updates existent measurement', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
const id = source.addOrUpdate(definition, measurement);
|
||||
|
||||
measurement.unit = 'HU';
|
||||
|
||||
source.addOrUpdate(definition, { id, ...measurement });
|
||||
const updatedMeasurement = measurementService.getMeasurement(id);
|
||||
|
||||
expect(updatedMeasurement.unit).toBe('HU');
|
||||
});
|
||||
});
|
||||
|
||||
describe('subscribe()', () => {
|
||||
it('subscribers receive broadcasted add event', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
const { MEASUREMENT_ADDED } = measurementService.EVENTS;
|
||||
let addCallbackWasCalled = false;
|
||||
|
||||
/* Subscribe to add event */
|
||||
measurementService.subscribe(
|
||||
MEASUREMENT_ADDED,
|
||||
() => (addCallbackWasCalled = true)
|
||||
);
|
||||
|
||||
/* Add new measurement */
|
||||
source.addOrUpdate(definition, measurement);
|
||||
|
||||
expect(addCallbackWasCalled).toBe(true);
|
||||
});
|
||||
|
||||
it('subscribers receive broadcasted update event', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
const { MEASUREMENT_UPDATED } = measurementService.EVENTS;
|
||||
let updateCallbackWasCalled = false;
|
||||
|
||||
/* Subscribe to update event */
|
||||
measurementService.subscribe(
|
||||
MEASUREMENT_UPDATED,
|
||||
() => (updateCallbackWasCalled = true)
|
||||
);
|
||||
|
||||
/* Create measurement */
|
||||
const id = source.addOrUpdate(definition, measurement);
|
||||
|
||||
/* Update measurement */
|
||||
source.addOrUpdate(definition, { id, ...measurement });
|
||||
|
||||
expect(updateCallbackWasCalled).toBe(true);
|
||||
});
|
||||
|
||||
it('unsubscribes a listener', () => {
|
||||
measurementService.addMapping(
|
||||
source,
|
||||
definition,
|
||||
matchingCriteria,
|
||||
toAnnotation,
|
||||
toMeasurement
|
||||
);
|
||||
|
||||
let updateCallbackWasCalled = false;
|
||||
const { MEASUREMENT_ADDED } = measurementService.EVENTS;
|
||||
|
||||
/* Subscribe to Add event */
|
||||
const { unsubscribe } = measurementService.subscribe(
|
||||
MEASUREMENT_ADDED,
|
||||
() => (updateCallbackWasCalled = true)
|
||||
);
|
||||
|
||||
/* Unsubscribe */
|
||||
unsubscribe();
|
||||
|
||||
/* Create measurement */
|
||||
source.addOrUpdate(definition, measurement);
|
||||
|
||||
expect(updateCallbackWasCalled).toBe(false);
|
||||
});
|
||||
});
|
||||
});
|
||||
@@ -0,0 +1,8 @@
|
||||
import MeasurementService from './MeasurementService';
|
||||
|
||||
export default {
|
||||
name: 'MeasurementService',
|
||||
create: ({ configuration = {} }) => {
|
||||
return new MeasurementService();
|
||||
},
|
||||
};
|
||||
@@ -2,10 +2,12 @@ import ServicesManager from './ServicesManager.js';
|
||||
import UINotificationService from './UINotificationService';
|
||||
import UIModalService from './UIModalService';
|
||||
import UIDialogService from './UIDialogService';
|
||||
import MeasurementService from './MeasurementService';
|
||||
|
||||
export {
|
||||
UINotificationService,
|
||||
UIModalService,
|
||||
UIDialogService,
|
||||
ServicesManager,
|
||||
MeasurementService,
|
||||
};
|
||||
@@ -3,6 +3,17 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
# [1.2.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.1.9...@ohif/ui@1.2.0) (2020-02-10)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Lesion tracker right panel ([#1428](https://github.com/OHIF/Viewers/issues/1428)) ([98a649b](https://github.com/OHIF/Viewers/commit/98a649b455ffc712938fc5035cdef40695e58440))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.1.9](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.1.8...@ohif/ui@1.1.9) (2020-01-30)
|
||||
|
||||
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/ui",
|
||||
"version": "1.1.9",
|
||||
"version": "1.2.0",
|
||||
"description": "A set of React components for Medical Imaging Viewers",
|
||||
"author": "OHIF Contributors",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -184,10 +184,12 @@ class MeasurementTable extends Component {
|
||||
};
|
||||
|
||||
getTimepointsHeader = () => {
|
||||
return this.props.timepoints.map((timepoint, index) => {
|
||||
const { timepoints, t } = this.props;
|
||||
|
||||
return timepoints.map((timepoint, index) => {
|
||||
return (
|
||||
<div key={index} className="measurementTableHeaderItem">
|
||||
<div className="timepointLabel">{this.props.t(timepoint.key)}</div>
|
||||
<div className="timepointLabel">{t(timepoint.key)}</div>
|
||||
<div className="timepointDate">{timepoint.date}</div>
|
||||
</div>
|
||||
);
|
||||
|
||||
@@ -84,7 +84,6 @@
|
||||
position: relative
|
||||
top: 2px
|
||||
|
||||
|
||||
.tooltip-warning
|
||||
&.in
|
||||
opacity 1
|
||||
|
||||
@@ -44,8 +44,8 @@ class MeasurementTableItem extends Component {
|
||||
<div>{this.getTableListItem()}</div>
|
||||
</OverlayTrigger>
|
||||
) : (
|
||||
<React.Fragment>{this.getTableListItem()}</React.Fragment>
|
||||
)}
|
||||
<React.Fragment>{this.getTableListItem()}</React.Fragment>
|
||||
)}
|
||||
</React.Fragment>
|
||||
);
|
||||
}
|
||||
@@ -101,7 +101,7 @@ class MeasurementTableItem extends Component {
|
||||
nsSeparator: '|',
|
||||
})}
|
||||
</div>
|
||||
<div>{this.getDataDisplayText()}</div>
|
||||
<div className="displayTexts">{this.getDataDisplayText()}</div>
|
||||
<div className="rowActions">{actionButtons}</div>
|
||||
</div>
|
||||
</TableListItem>
|
||||
|
||||
@@ -25,6 +25,20 @@ $headerRowHeight = 63px
|
||||
text-align: left
|
||||
flex: 1;
|
||||
|
||||
.tableListHeaderSelector
|
||||
cursor: pointer
|
||||
max-width: 30px
|
||||
padding-left: 2px
|
||||
align-items: stretch
|
||||
flex: 1
|
||||
justify-content: space-around
|
||||
text-align: center
|
||||
|
||||
svg
|
||||
fill: #c1d8e3
|
||||
height: 63px
|
||||
max-width: 11px
|
||||
|
||||
.numberOfItems
|
||||
color: var(--ui-sky-blue)
|
||||
float: right
|
||||
|
||||
@@ -3,6 +3,25 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [3.6.1](https://github.com/OHIF/Viewers/compare/@ohif/viewer@3.6.0...@ohif/viewer@3.6.1) (2020-02-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.6.0](https://github.com/OHIF/Viewers/compare/@ohif/viewer@3.5.1...@ohif/viewer@3.6.0) (2020-02-10)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 MeasurementService ([#1314](https://github.com/OHIF/Viewers/issues/1314)) ([0c37a40](https://github.com/OHIF/Viewers/commit/0c37a406d963569af8c3be24c697dafd42712dfc))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [3.5.1](https://github.com/OHIF/Viewers/compare/@ohif/viewer@3.5.0...@ohif/viewer@3.5.1) (2020-02-07)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/viewer",
|
||||
"version": "3.5.1",
|
||||
"version": "3.6.1",
|
||||
"description": "OHIF Viewer",
|
||||
"author": "OHIF Contributors",
|
||||
"license": "MIT",
|
||||
@@ -47,15 +47,15 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"@ohif/core": "^2.3.9",
|
||||
"@ohif/extension-cornerstone": "^2.2.2",
|
||||
"@ohif/core": "^2.4.0",
|
||||
"@ohif/extension-cornerstone": "^2.3.0",
|
||||
"@ohif/extension-dicom-html": "^1.1.0",
|
||||
"@ohif/extension-dicom-microscopy": "^0.50.6",
|
||||
"@ohif/extension-dicom-pdf": "^1.0.1",
|
||||
"@ohif/extension-lesion-tracker": "^0.1.0",
|
||||
"@ohif/extension-vtk": "^1.2.15",
|
||||
"@ohif/extension-lesion-tracker": "^0.2.0",
|
||||
"@ohif/extension-vtk": "^1.2.17",
|
||||
"@ohif/i18n": "^0.52.5",
|
||||
"@ohif/ui": "^1.1.9",
|
||||
"@ohif/ui": "^1.2.0",
|
||||
"@tanem/react-nprogress": "^1.1.25",
|
||||
"classnames": "^2.2.6",
|
||||
"core-js": "^3.2.1",
|
||||
|
||||
@@ -23,6 +23,7 @@ import {
|
||||
UINotificationService,
|
||||
UIModalService,
|
||||
UIDialogService,
|
||||
MeasurementService,
|
||||
utils,
|
||||
redux as reduxOHIF,
|
||||
} from '@ohif/core';
|
||||
@@ -122,7 +123,12 @@ class App extends Component {
|
||||
} = this._appConfig;
|
||||
|
||||
this.initUserManager(oidc);
|
||||
_initServices([UINotificationService, UIModalService, UIDialogService]);
|
||||
_initServices([
|
||||
UINotificationService,
|
||||
UIModalService,
|
||||
UIDialogService,
|
||||
MeasurementService,
|
||||
]);
|
||||
_initExtensions(
|
||||
[...defaultExtensions, ...extensions],
|
||||
cornerstoneExtensionConfig,
|
||||
@@ -144,6 +150,7 @@ class App extends Component {
|
||||
UINotificationService,
|
||||
UIDialogService,
|
||||
UIModalService,
|
||||
MeasurementService,
|
||||
} = servicesManager.services;
|
||||
|
||||
if (this._userManager) {
|
||||
|
||||
Reference in new issue
Block a user