chore(release): publish [skip ci]

- @ohif/extension-vtk@1.12.16
 - @ohif/core@2.16.12
 - @ohif/viewer@4.12.18

extensions/cornerstone/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [2.12.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.6...@ohif/extension-cornerstone@2.12.7) (2022-02-03)
+
+**Note:** Version bump only for package @ohif/extension-cornerstone
+
+
+
+
+
 ## [2.12.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.5...@ohif/extension-cornerstone@2.12.6) (2022-02-03)
 
 **Note:** Version bump only for package @ohif/extension-cornerstone

extensions/cornerstone/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-cornerstone",
-  "version": "2.12.6",
+  "version": "2.12.7",
   "description": "OHIF extension for Cornerstone",
   "author": "OHIF",
   "license": "MIT",
@@ -36,7 +36,7 @@
     "cornerstone-math": "^0.1.9",
     "cornerstone-tools": "^6.0.6",
     "cornerstone-wado-image-loader": "^4.1.0",
-    "dcmjs": "0.19.3",
+    "dcmjs": "0.19.4",
     "dicom-parser": "^1.8.11",
     "hammerjs": "^2.0.8",
     "prop-types": "^15.6.2",

extensions/dicom-html/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.3.18](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.17...@ohif/extension-dicom-html@1.3.18) (2022-02-03)
+
+**Note:** Version bump only for package @ohif/extension-dicom-html
+
+
+
+
+
 ## [1.3.17](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.16...@ohif/extension-dicom-html@1.3.17) (2022-02-03)
 
 **Note:** Version bump only for package @ohif/extension-dicom-html

extensions/dicom-html/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-html",
-  "version": "1.3.17",
+  "version": "1.3.18",
   "description": "OHIF extension for rendering structured reports to HTML",
   "author": "OHIF",
   "license": "MIT",
@@ -29,7 +29,7 @@
   },
   "peerDependencies": {
     "@ohif/core": "^0.50.0",
-    "dcmjs": "0.19.3",
+    "dcmjs": "0.19.4",
     "prop-types": "^15.6.2",
     "react": "^16.8.6",
     "react-dom": "^16.8.6"

extensions/dicom-rt/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.7.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.7...@ohif/extension-dicom-rt@0.7.8) (2022-02-03)
+
+**Note:** Version bump only for package @ohif/extension-dicom-rt
+
+
+
+
+
 ## [0.7.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.6...@ohif/extension-dicom-rt@0.7.7) (2022-02-02)
 
 **Note:** Version bump only for package @ohif/extension-dicom-rt

extensions/dicom-rt/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-rt",
-  "version": "0.7.7",
+  "version": "0.7.8",
   "description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
   "author": "OHIF",
   "license": "MIT",
@@ -31,7 +31,7 @@
     "@ohif/core": "^0.50.0",
     "cornerstone-core": "^2.6.1",
     "cornerstone-tools": "^6.0.6",
-    "dcmjs": "0.19.3",
+    "dcmjs": "0.19.4",
     "gl-matrix": "^3.3.0",
     "prop-types": "^15.6.2",
     "react": "^16.8.6",

extensions/dicom-segmentation/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.7.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.7...@ohif/extension-dicom-segmentation@0.7.8) (2022-02-03)
+
+**Note:** Version bump only for package @ohif/extension-dicom-segmentation
+
+
+
+
+
 ## [0.7.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.6...@ohif/extension-dicom-segmentation@0.7.7) (2022-02-02)
 
 **Note:** Version bump only for package @ohif/extension-dicom-segmentation

extensions/dicom-segmentation/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-segmentation",
-  "version": "0.7.7",
+  "version": "0.7.8",
   "description": "OHIF extension for viewing segmentations in the 2D MPR view",
   "author": "OHIF",
   "license": "MIT",
@@ -31,7 +31,7 @@
     "@ohif/core": "^0.50.0",
     "cornerstone-core": "^2.6.1",
     "cornerstone-tools": "^6.0.6",
-    "dcmjs": "0.19.3",
+    "dcmjs": "0.19.4",
     "prop-types": "^15.6.2",
     "react": "^16.8.6",
     "react-dom": "^16.8.6"

extensions/dicom-segmentation/src/getOHIFDicomSegSopClassHandler.js

@@ -150,10 +150,16 @@ export default function getSopClassHandlerModule({ servicesManager }) {
 }
 
 function _parseSeg(arrayBuffer, imageIds) {
+  const skipOverlapping = false;
+  const tolerance = 1e-2;
+  const cornerstoneToolsVersion = 4;
   return dcmjs.adapters.Cornerstone.Segmentation.generateToolState(
     imageIds,
     arrayBuffer,
-    cornerstone.metaData
+    cornerstone.metaData,
+    skipOverlapping,
+    tolerance,
+    cornerstoneToolsVersion
   );
 }
 

extensions/dicom-tag-browser/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.2.19](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.18...@ohif/extension-dicom-tag-browser@0.2.19) (2022-02-03)
+
+**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
+
+
+
+
+
 ## [0.2.18](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.17...@ohif/extension-dicom-tag-browser@0.2.18) (2022-02-02)
 
 **Note:** Version bump only for package @ohif/extension-dicom-tag-browser

extensions/dicom-tag-browser/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-tag-browser",
-  "version": "0.2.18",
+  "version": "0.2.19",
   "description": "OHIF extension for checking DICOM headers.",
   "author": "OHIF",
   "license": "MIT",
@@ -28,7 +28,7 @@
   },
   "peerDependencies": {
     "@ohif/core": "^2.6.0",
-    "dcmjs": "0.19.3",
+    "dcmjs": "0.19.4",
     "react": "^16.8.6"
   },
   "dependencies": {

extensions/vtk/CHANGELOG.md

@@ -3,6 +3,22 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.12.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.15...@ohif/extension-vtk@1.12.16) (2022-02-15)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.12.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.14...@ohif/extension-vtk@1.12.15) (2022-02-03)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
 ## [1.12.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.13...@ohif/extension-vtk@1.12.14) (2022-02-03)
 
 **Note:** Version bump only for package @ohif/extension-vtk

extensions/vtk/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-vtk",
-  "version": "1.12.14",
+  "version": "1.12.16",
   "description": "OHIF extension for VTK.js",
   "author": "OHIF",
   "license": "MIT",
@@ -35,7 +35,7 @@
     "cornerstone-core": "^2.6.1",
     "cornerstone-tools": "^6.0.6",
     "cornerstone-wado-image-loader": "^4.1.0",
-    "dcmjs": "0.19.3",
+    "dcmjs": "0.19.4",
     "dicom-parser": "^1.8.11",
     "i18next": "^17.0.3",
     "i18next-browser-languagedetector": "^3.0.1",
@@ -53,7 +53,7 @@
     "react-vtkjs-viewport": "^0.14.4"
   },
   "devDependencies": {
-    "@ohif/core": "^2.16.10",
+    "@ohif/core": "^2.16.12",
     "@ohif/ui": "^1.10.6",
     "cornerstone-tools": "^6.0.6",
     "cornerstone-wado-image-loader": "^4.1.0",

platform/core/CHANGELOG.md

@@ -3,6 +3,22 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [2.16.12](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.11...@ohif/core@2.16.12) (2022-02-15)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
+## [2.16.11](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.10...@ohif/core@2.16.11) (2022-02-03)
+
+**Note:** Version bump only for package @ohif/core
+
+
+
+
+
 ## [2.16.10](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.9...@ohif/core@2.16.10) (2022-02-03)
 
 **Note:** Version bump only for package @ohif/core

platform/core/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/core",
-  "version": "2.16.10",
+  "version": "2.16.12",
   "description": "Generic business logic for web-based medical imaging applications",
   "author": "OHIF Core Team",
   "license": "MIT",
@@ -39,9 +39,9 @@
   "dependencies": {
     "@babel/runtime": "^7.5.5",
     "ajv": "^6.10.0",
-    "dcmjs": "0.19.3",
+    "dcmjs": "0.19.4",
     "dicomweb-client": "^0.8.3",
-    "immer": "6.0.2",
+    "immer": "9.0.12",
     "isomorphic-base64": "^1.0.2",
     "lodash.clonedeep": "^4.5.0",
     "lodash.merge": "^4.6.1",

platform/core/src/DICOMSR/SCOORD3D/parseSCOORD3D.js

@@ -28,7 +28,13 @@ const parseSCOORD3D = ({ servicesManager, displaySets }) => {
     srDisplaySet.isRehydratable = isRehydratable(srDisplaySet, mappings);
     srDisplaySet.isLoaded = true;
 
-    const imageDisplaySets = displaySets.filter(ds => ds.Modality !== 'SR');
+    const imageDisplaySets = displaySets.filter(
+      ds =>
+        ds.Modality !== 'SR' &&
+        ds.Modality !== 'SEG' &&
+        ds.Modality !== 'RTSTRUCT' &&
+        ds.Modality !== 'RTDOSE'
+    );
     imageDisplaySets.forEach(imageDisplaySet => {
       // Check currently added displaySets and add measurements if the sources exist.
       checkIfCanAddMeasurementsToDisplaySet(srDisplaySet, imageDisplaySet);

platform/core/src/DICOMSR/SCOORD3D/utils/getReferencedImagesList.js

@@ -24,12 +24,17 @@ const getReferencedImagesList = ImagingMeasurementReportContentSequence => {
 
   getSequenceAsArray(ImageLibraryGroup.ContentSequence).forEach(item => {
     const { ReferencedSOPSequence } = item;
-    const {
-      ReferencedSOPClassUID,
-      ReferencedSOPInstanceUID,
-    } = ReferencedSOPSequence;
+    if (ReferencedSOPSequence) {
+      const {
+        ReferencedSOPClassUID,
+        ReferencedSOPInstanceUID,
+      } = ReferencedSOPSequence;
 
-    referencedImages.push({ ReferencedSOPClassUID, ReferencedSOPInstanceUID });
+      referencedImages.push({
+        ReferencedSOPClassUID,
+        ReferencedSOPInstanceUID,
+      });
+    }
   });
 
   return referencedImages;

platform/core/src/DICOMSR/SCOORD3D/utils/processNonGeometricallyDefinedMeasurement.js

@@ -79,6 +79,12 @@ const processNonGeometricallyDefinedMeasurement = mergedContentSequence => {
       MeasuredValueSequence,
     } = item;
 
+    if (!ContentSequence) {
+      console.warn(`Graphic ${ContentSequence} missing, skipping annotation.`);
+
+      return;
+    }
+
     const { ValueType } = ContentSequence;
 
     if (!ValueType === 'SCOORD' && !ValueType === 'SCOORD3D') {

platform/viewer/CHANGELOG.md

@@ -3,6 +3,22 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [4.12.18](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.17...@ohif/viewer@4.12.18) (2022-02-15)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.12.17](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.16...@ohif/viewer@4.12.17) (2022-02-03)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
 ## [4.12.16](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.12.15...@ohif/viewer@4.12.16) (2022-02-03)
 
 **Note:** Version bump only for package @ohif/viewer

platform/viewer/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/viewer",
-  "version": "4.12.16",
+  "version": "4.12.18",
   "description": "OHIF Viewer",
   "author": "OHIF Contributors",
   "license": "MIT",
@@ -47,16 +47,16 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.5.5",
-    "@ohif/core": "^2.16.10",
-    "@ohif/extension-cornerstone": "^2.12.6",
+    "@ohif/core": "^2.16.12",
+    "@ohif/extension-cornerstone": "^2.12.7",
     "@ohif/extension-debugging": "^0.3.1",
-    "@ohif/extension-dicom-html": "^1.3.17",
+    "@ohif/extension-dicom-html": "^1.3.18",
     "@ohif/extension-dicom-microscopy": "^0.52.0",
     "@ohif/extension-dicom-pdf": "^1.1.2",
-    "@ohif/extension-dicom-rt": "^0.7.7",
-    "@ohif/extension-dicom-segmentation": "^0.7.7",
+    "@ohif/extension-dicom-rt": "^0.7.8",
+    "@ohif/extension-dicom-segmentation": "^0.7.8",
     "@ohif/extension-lesion-tracker": "^0.2.1",
-    "@ohif/extension-vtk": "^1.12.14",
+    "@ohif/extension-vtk": "^1.12.16",
     "@ohif/i18n": "^0.53.0",
     "@ohif/ui": "^1.10.6",
     "@tanem/react-nprogress": "^1.1.25",
@@ -66,7 +66,7 @@
     "cornerstone-math": "^0.1.9",
     "cornerstone-tools": "^6.0.6",
     "cornerstone-wado-image-loader": "^4.1.0",
-    "dcmjs": "0.19.3",
+    "dcmjs": "0.19.4",
     "dicom-parser": "^1.8.11",
     "dicomweb-client": "^0.8.3",
     "hammerjs": "^2.0.8",
@@ -94,7 +94,7 @@
     "cypress": "^6.0.0",
     "gh-pages": "2.0.1",
     "identity-obj-proxy": "3.0.x",
-    "lodash": "4.17.15",
+    "lodash": "4.17.21",
     "lodash.clonedeep": "4.5.0"
   }
 }

yarn.lock

@@ -6942,10 +6942,10 @@ dateformat@^3.0.0:
   resolved "https://registry.yarnpkg.com/dateformat/-/dateformat-3.0.3.tgz#a6e37499a4d9a9cf85ef5872044d62901c9889ae"
   integrity sha512-jyCETtSl3VMZMWeRo7iY1FL19ges1t55hMo5yaam4Jrsm5EPL89UQkoQRyiI+Yf4k8r2ZpdngkV8hr1lIdjb3Q==
 
-dcmjs@0.19.3:
-  version "0.19.3"
-  resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.19.3.tgz#8b0c3ea920a09d1646493504a711b32c7d54aec3"
-  integrity sha512-MpUQF7AIvyIa291i7WoQ1PUClNLes11XBFe9IOP02mNkmjWCptE7JuvpD2maSuVaMY48ZIi0krOdn1Y+M3OmqA==
+dcmjs@0.19.4:
+  version "0.19.4"
+  resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.19.4.tgz#b2ce1cc1e672ead3fba12bafd2e8a655b398601a"
+  integrity sha512-ZpOsuyBMcmDVPo0EtqztRGu1ARKMqIfbJGbtDxmBwxeE5SEHMQJvrZHhyLoxuS10R3w+jL2SJ0r7Dn9aSDZH1w==
   dependencies:
     "@babel/polyfill" "^7.8.3"
     "@babel/runtime" "^7.8.4"
@@ -10660,10 +10660,10 @@ immer@1.10.0:
   resolved "https://registry.yarnpkg.com/immer/-/immer-1.10.0.tgz#bad67605ba9c810275d91e1c2a47d4582e98286d"
   integrity sha512-O3sR1/opvCDGLEVcvrGTMtLac8GJ5IwZC4puPrLuRj3l7ICKvkmA0vGuU9OW8mV9WIBRnaxp5GJh9IEAaNOoYg==
 
-immer@6.0.2:
-  version "6.0.2"
-  resolved "https://registry.yarnpkg.com/immer/-/immer-6.0.2.tgz#5bc08dc4930c756d0749533a2afbd88c8de0cd19"
-  integrity sha512-56CMvUMZl4kkWJFFUe1TjBgGbyb9ibzpLyHD+RSKSVdytuDXgT/HXO1S+GJVywMVl5neGTdAogoR15eRVEd10Q==
+immer@9.0.12:
+  version "9.0.12"
+  resolved "https://registry.yarnpkg.com/immer/-/immer-9.0.12.tgz#2d33ddf3ee1d247deab9d707ca472c8c942a0f20"
+  integrity sha512-lk7UNmSbAukB5B6dh9fnh5D0bJTOFKxVg2cyJWTYrWRfhLrLMBquONcUs3aFq507hNoIZEDDh8lb8UtOizSMhA==
 
 immutable@>=3.6.0:
   version "3.8.2"
@@ -12841,7 +12841,12 @@ lodash.uniq@4.5.0, lodash.uniq@^4.5.0:
   resolved "https://registry.yarnpkg.com/lodash.uniq/-/lodash.uniq-4.5.0.tgz#d0225373aeb652adc1bc82e4945339a842754773"
   integrity sha1-0CJTc662Uq3BvILklFM5qEJ1R3M=
 
-lodash@4.17.15, "lodash@>=3.5 <5", lodash@^4.0.0, lodash@^4.1.1, lodash@^4.17.10, lodash@^4.17.11, lodash@^4.17.12, lodash@^4.17.13, lodash@^4.17.14, lodash@^4.17.15, lodash@^4.17.3, lodash@^4.17.4, lodash@^4.17.5, lodash@^4.2.1, lodash@^4.3.0, lodash@~4.17.10:
+lodash@4.17.21:
+  version "4.17.21"
+  resolved "https://registry.yarnpkg.com/lodash/-/lodash-4.17.21.tgz#679591c564c3bffaae8454cf0b3df370c3d6911c"
+  integrity sha512-v2kDEe57lecTulaDIuNTPy3Ry4gLGJ6Z1O3vE1krgXZNrsQ+LFTGHVxVjcXPs17LhbZVGedAJv8XZ1tvj5FvSg==
+
+"lodash@>=3.5 <5", lodash@^4.0.0, lodash@^4.1.1, lodash@^4.17.10, lodash@^4.17.11, lodash@^4.17.12, lodash@^4.17.13, lodash@^4.17.14, lodash@^4.17.15, lodash@^4.17.3, lodash@^4.17.4, lodash@^4.17.5, lodash@^4.2.1, lodash@^4.3.0, lodash@~4.17.10:
   version "4.17.15"
   resolved "https://registry.yarnpkg.com/lodash/-/lodash-4.17.15.tgz#b447f6670a0455bbfeedd11392eff330ea097548"
   integrity sha512-8xOcRHvCjnocdS5cpwXQXVzmmh5e5+saE2QGoeQmbKmRS6J3VQppPOIt0MnmE+4xlZoumy0GPG0D0MVIQbNA1A==