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+37
-27
@@ -48,12 +48,12 @@ jobs:
|
||||
- checkout:
|
||||
post:
|
||||
- git fetch --all
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
# - restore_cache:
|
||||
# name: Restore Yarn and Cypress Package Cache
|
||||
# keys:
|
||||
# # when lock file changes, use increasingly general patterns to restore cache
|
||||
# - yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# - yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
@@ -107,18 +107,19 @@ jobs:
|
||||
post:
|
||||
- git fetch --all
|
||||
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
# - restore_cache:
|
||||
# name: Restore Yarn and Cypress Package Cache
|
||||
# keys:
|
||||
# # when lock file changes, use increasingly general patterns to restore cache
|
||||
# - yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# - yarn-packages-
|
||||
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
|
||||
- setup_remote_docker:
|
||||
version: 19.03.13
|
||||
docker_layer_caching: false
|
||||
|
||||
- run:
|
||||
@@ -143,12 +144,12 @@ jobs:
|
||||
- checkout:
|
||||
post:
|
||||
- git fetch --all
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
# - restore_cache:
|
||||
# name: Restore Yarn and Cypress Package Cache
|
||||
# keys:
|
||||
# # when lock file changes, use increasingly general patterns to restore cache
|
||||
# - yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# - yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
@@ -237,11 +238,11 @@ jobs:
|
||||
post:
|
||||
- git fetch --all
|
||||
# Use increasingly general patterns to restore cache
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
# - restore_cache:
|
||||
# name: Restore Yarn and Cypress Package Cache
|
||||
# keys:
|
||||
# - yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# - yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
@@ -295,6 +296,7 @@ jobs:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- setup_remote_docker:
|
||||
version: 19.03.13
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Build and push Docker image
|
||||
@@ -346,7 +348,9 @@ workflows:
|
||||
record: true
|
||||
store_artifacts: true
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build
|
||||
build:
|
||||
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
yarn run build
|
||||
start: yarn run test:e2e:serve
|
||||
spec: 'cypress/integration/common/**/*,cypress/integration/pwa/**/*'
|
||||
wait-on: 'http://localhost:3000'
|
||||
@@ -372,7 +376,9 @@ workflows:
|
||||
record: true
|
||||
store_artifacts: true
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build:package
|
||||
build:
|
||||
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
yarn run build:package
|
||||
start: yarn run test:e2e:serve
|
||||
spec: 'cypress/integration/common/**/*,cypress/integration/script-tag/**/*'
|
||||
wait-on: 'http://localhost:3000'
|
||||
@@ -403,7 +409,9 @@ workflows:
|
||||
yarn: true
|
||||
store_artifacts: false
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build
|
||||
build:
|
||||
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
yarn run build
|
||||
# start server --> verify running --> percy + chrome + cypress
|
||||
command: yarn run test:e2e:dist
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
@@ -480,7 +488,9 @@ workflows:
|
||||
yarn: true
|
||||
store_artifacts: false
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build
|
||||
build:
|
||||
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
yarn run build
|
||||
# start server --> verify running --> percy + chrome + cypress
|
||||
command: yarn run test:e2e:dist
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
|
||||
@@ -0,0 +1 @@
|
||||
custom: https://giving.massgeneral.org/ohif
|
||||
@@ -1,18 +0,0 @@
|
||||
---
|
||||
name: "\U0001F917 Support Question"
|
||||
about: "I have a question \U0001F4AC"
|
||||
title: ''
|
||||
labels: 'Community: Question :question:, Triage :white_flag:'
|
||||
assignees: ''
|
||||
---
|
||||
|
||||
> :hand: We are a small team with limited resources. Your question is much more
|
||||
> likely to be answered if it is
|
||||
> [a good question](https://stackoverflow.com/help/how-to-ask)
|
||||
|
||||
**Description**
|
||||
|
||||
Questions can often be answered by our documentation. Unable to find an answer
|
||||
in our docs? We'll try to help. In the meantime, if you answer your own
|
||||
question, please respond with the answer here so that others may benefit as
|
||||
well. Better yet, open a PR to expand our docs ^\_^
|
||||
@@ -0,0 +1,5 @@
|
||||
blank_issues_enabled: false
|
||||
contact_links:
|
||||
- name: 🤗 Support Question
|
||||
url: https://community.ohif.org/
|
||||
about: Please use our forum if you have questions or need help.
|
||||
@@ -9,6 +9,10 @@ src/version.js
|
||||
junit.xml
|
||||
coverage/
|
||||
.docz/
|
||||
*.js.map
|
||||
.yarn
|
||||
platform/docs/.docusaurus
|
||||
platform/ui/storybook-static
|
||||
|
||||
# YALC (for Erik)
|
||||
.yalc
|
||||
@@ -34,3 +38,4 @@ screenshots/
|
||||
|
||||
# Locize settings
|
||||
.locize
|
||||
|
||||
Vendored
+15
@@ -0,0 +1,15 @@
|
||||
{
|
||||
// Use IntelliSense to learn about possible attributes.
|
||||
// Hover to view descriptions of existing attributes.
|
||||
// For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
|
||||
"version": "0.2.0",
|
||||
"configurations": [
|
||||
{
|
||||
"type": "pwa-chrome",
|
||||
"request": "launch",
|
||||
"name": "Launch Chrome against localhost",
|
||||
"url": "http://localhost:3000",
|
||||
"webRoot": "${workspaceFolder}"
|
||||
}
|
||||
]
|
||||
}
|
||||
@@ -0,0 +1,24 @@
|
||||
cff-version: 1.2.0
|
||||
message: "If you use this software, please cite it as below."
|
||||
authors:
|
||||
- family-names: "Ziegler"
|
||||
given-names: "Erik"
|
||||
orcid: "https://orcid.org/0000-0003-1857-8129"
|
||||
- family-names: "Urban"
|
||||
given-names: "Trinity"
|
||||
- family-names: "Brown"
|
||||
given-names: "Danny"
|
||||
- family-names: "Petts"
|
||||
given-names: "James"
|
||||
- family-names: "Pieper"
|
||||
given-names: "Steve D"
|
||||
- family-names: "Lewis"
|
||||
given-names: "Rob"
|
||||
- family-names: "Hafey"
|
||||
given-names: "Chris"
|
||||
- family-names: "Harris"
|
||||
given-names: "Gordon J"
|
||||
title: "Open Health Imaging Foundation Viewer: An Extensible Open-Source Framework for Building Web-Based Imaging Applications to Support Cancer Research"
|
||||
doi: 10.1200/CCI.19.00131
|
||||
version: 1.0.0
|
||||
url: "https://github.com/OHIF/Viewers"
|
||||
+3
-2
@@ -21,7 +21,7 @@
|
||||
|
||||
# Stage 1: Build the application
|
||||
# docker build -t ohif/viewer:latest .
|
||||
FROM node:10.16.3-slim as builder
|
||||
FROM node:15.13.0-slim as builder
|
||||
|
||||
RUN mkdir /usr/src/app
|
||||
WORKDIR /usr/src/app
|
||||
@@ -39,6 +39,7 @@ COPY package.json /usr/src/app/package.json
|
||||
COPY postcss.config.js /usr/src/app/postcss.config.js
|
||||
COPY yarn.lock /usr/src/app/yarn.lock
|
||||
|
||||
RUN apt-get update && apt-get install -y python make g++
|
||||
# Run the install before copying the rest of the files
|
||||
RUN yarn config set workspaces-experimental true
|
||||
RUN yarn install
|
||||
@@ -52,7 +53,7 @@ RUN yarn run build
|
||||
|
||||
# Stage 2: Bundle the built application into a Docker container
|
||||
# which runs Nginx using Alpine Linux
|
||||
FROM nginx:1.15.5-alpine
|
||||
FROM nginx:1.21.1-alpine
|
||||
RUN apk add --no-cache bash
|
||||
RUN rm -rf /etc/nginx/conf.d
|
||||
COPY .docker/Viewer-v2.x /etc/nginx/conf.d
|
||||
|
||||
@@ -248,9 +248,6 @@ To acknowledge the OHIF Viewer in an academic publication, please cite
|
||||
>
|
||||
> _Cancer Research_, November 1 2017 (77) (21) e119-e122 DOI:
|
||||
> [10.1158/0008-5472.CAN-17-0334](https://www.doi.org/10.1158/0008-5472.CAN-17-0334)
|
||||
>
|
||||
> NCI Imaging Data Commons: contract number 19X037Q from Leidos Biomedical
|
||||
> Research under Task Order HHSN26100071 from NCI.
|
||||
|
||||
**Note:** If you use or find this repository helpful, please take the time to
|
||||
star this repository on Github. This is an easy way for us to assess adoption
|
||||
@@ -261,6 +258,33 @@ Cancer Institute, Informatics Technology for Cancer Research (ITCR) program,
|
||||
under a
|
||||
[grant to Dr. Gordon Harris at Massachusetts General Hospital (U24 CA199460)](https://projectreporter.nih.gov/project_info_description.cfm?aid=8971104).
|
||||
|
||||
## Projects that contributed to OHIF Viewer
|
||||
|
||||
The following is a (partial) list of projects that contributed resources towards
|
||||
development of OHIF Viewer:
|
||||
|
||||
- [NCI Imaging Data Commons (IDC) project](https://imaging.datacommons.cancer.gov/)
|
||||
supported development of new features and bug fixes marked with
|
||||
["IDC:priority"](https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3AIDC%3Apriority),
|
||||
["IDC:candidate"](https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3AIDC%3Acandidate)
|
||||
or
|
||||
["IDC:collaboration"](https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3AIDC%3Acollaboration).
|
||||
NCI Imaging Data Commons is supported by the contract number 19X037Q from
|
||||
Leidos Biomedical Research under Task Order HHSN26100071 from NCI.
|
||||
[IDC Viewer](https://learn.canceridc.dev/portal/visualization) is a customized
|
||||
version of the OHIF Viewer.
|
||||
|
||||
### Research notice
|
||||
Please note that this repository is participating in a study into sustainability
|
||||
of open source projects. Data will be gathered about this repository for
|
||||
approximately the next 12 months, starting from June 2021.
|
||||
|
||||
Data collected will include number of contributors, number of PRs, time taken to
|
||||
close/merge these PRs, and issues closed.
|
||||
|
||||
For more information, please visit
|
||||
[our informational page](https://sustainable-open-science-and-software.github.io/) or download our [participant information sheet](https://sustainable-open-science-and-software.github.io/assets/PIS_sustainable_software.pdf).
|
||||
|
||||
## License
|
||||
|
||||
MIT © [OHIF](https://github.com/OHIF)
|
||||
|
||||
@@ -8,7 +8,6 @@
|
||||
"-fontsettings",
|
||||
"github",
|
||||
"ga",
|
||||
"sitemap",
|
||||
"anchors",
|
||||
"versions"
|
||||
],
|
||||
@@ -24,7 +23,8 @@
|
||||
"token": "UA-110573590-2"
|
||||
},
|
||||
"sitemap": {
|
||||
"hostname": "https://docs.ohif.org"
|
||||
"hostname": "https://docs.ohif.org",
|
||||
"todo": "sitemap plugin removed; causing build errors"
|
||||
},
|
||||
"versions": {
|
||||
"gitbookConfigURL": "https://raw.githubusercontent.com/OHIF/Viewers/master/docs/book.json",
|
||||
|
||||
@@ -67,6 +67,33 @@ window.config = {
|
||||
extensions: [],
|
||||
showStudyList: true,
|
||||
filterQueryParam: false,
|
||||
/**
|
||||
* Disable caching of servers configuration.
|
||||
*
|
||||
* There will be no effect if you update the servers property of this config
|
||||
* while your application is running because this property is cached in local storage.
|
||||
*/
|
||||
disableServersCache: false,
|
||||
/**
|
||||
* OHIF's study prefetcher configuration.
|
||||
*
|
||||
* @param {boolean} enabled Whether to enable/disable OHIF's study prefetcher
|
||||
* @param {('all'|'closest'|'downward'|'upward'|'topdown')} order Fetching order: all display sets, the closest ones, downward or top down fashion based on the currently selected display set
|
||||
* @param {number} displaySetCount How much display sets should be prefetched at once (note: this attribute is ignored if order was set to 'all')
|
||||
* @param {boolean} preventCache Prevent images to be cached in Cornerstone Tools's request pool manager
|
||||
* @param {number} prefetchDisplaySetsTimeout Prefetch timeout
|
||||
* @param {boolean} displayProgress Whether to display or not the progress bar in the display set
|
||||
* @param {boolean} includeActiveDisplaySet Include or not the active display set while prefetching
|
||||
*/
|
||||
studyPrefetcher: {
|
||||
enabled: true,
|
||||
order: 'all',
|
||||
displaySetCount: 1,
|
||||
preventCache: false,
|
||||
prefetchDisplaySetsTimeout: 300,
|
||||
displayProgress: false,
|
||||
includeActiveDisplaySet: true,
|
||||
},
|
||||
servers: {
|
||||
dicomWeb: [
|
||||
{
|
||||
@@ -81,7 +108,14 @@ window.config = {
|
||||
},
|
||||
],
|
||||
},
|
||||
// Supported Keys: https://craig.is/killing/mice
|
||||
/**
|
||||
* Hotkey definitions.
|
||||
* Supported Keys: https://craig.is/killing/mice
|
||||
*
|
||||
* @param {string} commandName
|
||||
* @param {string} label
|
||||
* @param {array} keys
|
||||
*/
|
||||
hotkeys: [
|
||||
{ commandName: 'rotateViewportCW', label: 'Rotate Right', keys: ['r'] },
|
||||
{ commandName: 'rotateViewportCCW', label: 'Rotate Left', keys: ['l'] },
|
||||
@@ -97,14 +131,16 @@ window.config = {
|
||||
keys: ['v'],
|
||||
},
|
||||
],
|
||||
/* Configuration passed to the bundled cornerstone extension
|
||||
/**
|
||||
* Configuration passed to the bundled cornerstone extension
|
||||
*
|
||||
* The cornerstone extension is currently tightly coupled to the platform.
|
||||
* Until we're able to decouple it, this key will serve as a workaround to
|
||||
* pass it configuration.
|
||||
*
|
||||
* @param {boolean} hideHandles Whether to show/hide annotation "handles"
|
||||
*/
|
||||
cornerstoneExtensionConfig: {
|
||||
/* Whether to show/hide annotation "handles" */
|
||||
hideHandles: true,
|
||||
},
|
||||
};
|
||||
|
||||
@@ -0,0 +1,37 @@
|
||||
# Viewer: Study Prefetcher & Stack Prefetch
|
||||
|
||||
Prefetching the stack of images of the active viewport is enabled by default for
|
||||
cornerstone viewports via cornerstone tools's stack prefetch functionality.
|
||||
|
||||
In order to have a more customizable alternative for prefetching, OHIF provides
|
||||
a built-in study prefetcher functionality which allows the user to set the order
|
||||
in which the display sets are prefetched, the granularity, the timeout and
|
||||
whether or not display a progress bar in the display set (close to the thumbnail
|
||||
image) in the study browser.
|
||||
|
||||
You can customize these options via the viewer's configuration:
|
||||
|
||||
```js
|
||||
window.config = {
|
||||
/**
|
||||
* OHIF's study prefetcher configuration.
|
||||
*
|
||||
* @param {boolean} enabled Whether to enable/disable OHIF's study prefetcher
|
||||
* @param {('all'|'closest'|'downward'|'upward'|'topdown')} order Fetching order: all display sets, the closest ones, downward or top down fashion based on the currently selected display set
|
||||
* @param {number} displaySetCount How much display sets should be prefetched at once (note: this attribute is ignored if order was set to 'all')
|
||||
* @param {boolean} preventCache Prevent images to be cached in Cornerstone Tools's request pool manager
|
||||
* @param {number} prefetchDisplaySetsTimeout Prefetch timeout
|
||||
* @param {boolean} displayProgress Whether to display or not the progress bar in the display set
|
||||
* @param {boolean} includeActiveDisplaySet Include or not the active display set while prefetching
|
||||
*/
|
||||
studyPrefetcher: {
|
||||
enabled: true,
|
||||
order: 'all',
|
||||
displaySetCount: 1,
|
||||
preventCache: false,
|
||||
prefetchDisplaySetsTimeout: 300,
|
||||
displayProgress: false,
|
||||
includeActiveDisplaySet: true,
|
||||
},
|
||||
};
|
||||
```
|
||||
+2
-2
@@ -8,7 +8,6 @@
|
||||
"-fontsettings",
|
||||
"github",
|
||||
"ga",
|
||||
"sitemap",
|
||||
"anchors",
|
||||
"versions"
|
||||
],
|
||||
@@ -24,7 +23,8 @@
|
||||
"token": "UA-110573590-2"
|
||||
},
|
||||
"sitemap": {
|
||||
"hostname": "https://docs.ohif.org"
|
||||
"hostname": "https://docs.ohif.org",
|
||||
"todo": "sitemap plugin removed; causing build errors"
|
||||
},
|
||||
"versions": {
|
||||
"gitbookConfigURL": "https://raw.githubusercontent.com/OHIF/Viewers/master/docs/book.json",
|
||||
|
||||
@@ -3,6 +3,130 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [2.12.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.2...@ohif/extension-cornerstone@2.12.3) (2021-12-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.12.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.1...@ohif/extension-cornerstone@2.12.2) (2021-10-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.12.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.12.0...@ohif/extension-cornerstone@2.12.1) (2021-09-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [2.12.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.11.0...@ohif/extension-cornerstone@2.12.0) (2021-09-23)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [2.11.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.10...@ohif/extension-cornerstone@2.11.0) (2021-09-09)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* OHIF-1000: Study prefetcher ([#2466](https://github.com/OHIF/Viewers/issues/2466)) ([8f26045](https://github.com/OHIF/Viewers/commit/8f2604509d24092b721f1333289d838820d68cac))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.9...@ohif/extension-cornerstone@2.10.10) (2021-07-26)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* changed new image handler conditional for 0 edge case ([#2338](https://github.com/OHIF/Viewers/issues/2338)) ([b8ae92c](https://github.com/OHIF/Viewers/commit/b8ae92c2d4f733b3ca89826118029685650b396a))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.8...@ohif/extension-cornerstone@2.10.9) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.7...@ohif/extension-cornerstone@2.10.8) (2021-05-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.6...@ohif/extension-cornerstone@2.10.7) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.5...@ohif/extension-cornerstone@2.10.6) (2021-03-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.4...@ohif/extension-cornerstone@2.10.5) (2021-03-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.3...@ohif/extension-cornerstone@2.10.4) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.2...@ohif/extension-cornerstone@2.10.3) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.1...@ohif/extension-cornerstone@2.10.2) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.0...@ohif/extension-cornerstone@2.10.1) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
@@ -85,12 +85,32 @@ Tools can be configured through extension configuration using the tools key:
|
||||
...
|
||||
```
|
||||
|
||||
## Stack prefetch configuration
|
||||
|
||||
Stack prefetch can be configured through extension configuration using the
|
||||
stackPrefetch key:
|
||||
|
||||
```js
|
||||
...
|
||||
cornerstoneExtensionConfig: {
|
||||
stackPrefetch: {
|
||||
enabled: true,
|
||||
maxImagesToPrefetch: Infinity,
|
||||
preserveExistingPool: false,
|
||||
maxSimultaneousRequests: 20,
|
||||
},
|
||||
},
|
||||
...
|
||||
```
|
||||
|
||||
## Annotate Tools Configuration
|
||||
|
||||
*We currently support one property for annotation tools.*
|
||||
_We currently support one property for annotation tools._
|
||||
|
||||
### Hide handles
|
||||
This extension configuration allows you to toggle on/off handle rendering for all annotate tools:
|
||||
|
||||
This extension configuration allows you to toggle on/off handle rendering for
|
||||
all annotate tools:
|
||||
|
||||
```js
|
||||
...
|
||||
@@ -119,3 +139,4 @@ This extension configuration allows you to toggle on/off handle rendering for al
|
||||
[cornerstone-tools]: https://github.com/cornerstonejs/cornerstoneTools
|
||||
[cornerstone]: https://github.com/cornerstonejs/cornerstone
|
||||
<!-- prettier-ignore-end -->
|
||||
```
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone",
|
||||
"version": "2.10.1",
|
||||
"version": "2.12.3",
|
||||
"description": "OHIF extension for Cornerstone",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -32,12 +32,12 @@
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"@ohif/ui": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-math": "^0.1.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dcmjs": "0.17.2",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"cornerstone-core": "^2.6.1",
|
||||
"cornerstone-math": "^0.1.9",
|
||||
"cornerstone-tools": "^6.0.6",
|
||||
"cornerstone-wado-image-loader": "^4.1.0",
|
||||
"dcmjs": "0.19.1",
|
||||
"dicom-parser": "^1.8.11",
|
||||
"hammerjs": "^2.0.8",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
@@ -51,6 +51,6 @@
|
||||
"classnames": "^2.2.6",
|
||||
"lodash.merge": "^4.6.2",
|
||||
"lodash.throttle": "^4.1.1",
|
||||
"react-cornerstone-viewport": "4.0.4"
|
||||
"react-cornerstone-viewport": "4.1.1"
|
||||
}
|
||||
}
|
||||
@@ -53,7 +53,11 @@ const mapStateToProps = (state, ownProps) => {
|
||||
// Currently justing using escape hatch + commands
|
||||
// activeTool: activeButton && activeButton.command,
|
||||
...dataFromStore,
|
||||
isStackPrefetchEnabled: isActive,
|
||||
isStackPrefetchEnabled: ownProps.hasOwnProperty('isStackPrefetchEnabled')
|
||||
? ownProps.isStackPrefetchEnabled
|
||||
: ownProps.stackPrefetch
|
||||
? ownProps.stackPrefetch.enabled
|
||||
: isActive,
|
||||
isPlaying,
|
||||
frameRate,
|
||||
//stack: viewportSpecificData.stack,
|
||||
|
||||
@@ -1,5 +1,6 @@
|
||||
import React, { Component } from 'react';
|
||||
|
||||
import OHIFCornerstoneViewportOverlay from './components/OHIFCornerstoneViewportOverlay';
|
||||
import ConnectedCornerstoneViewport from './ConnectedCornerstoneViewport';
|
||||
import OHIF from '@ohif/core';
|
||||
import PropTypes from 'prop-types';
|
||||
@@ -14,6 +15,7 @@ class OHIFCornerstoneViewport extends Component {
|
||||
|
||||
static defaultProps = {
|
||||
customProps: {},
|
||||
isStackPrefetchEnabled: true,
|
||||
};
|
||||
|
||||
static propTypes = {
|
||||
@@ -22,6 +24,8 @@ class OHIFCornerstoneViewport extends Component {
|
||||
viewportIndex: PropTypes.number,
|
||||
children: PropTypes.node,
|
||||
customProps: PropTypes.object,
|
||||
stackPrefetch: PropTypes.object,
|
||||
isStackPrefetchEnabled: PropTypes.bool,
|
||||
};
|
||||
|
||||
static id = 'OHIFCornerstoneViewport';
|
||||
@@ -179,7 +183,7 @@ class OHIFCornerstoneViewport extends Component {
|
||||
|
||||
if (
|
||||
displaySet.displaySetInstanceUID !==
|
||||
prevDisplaySet.displaySetInstanceUID ||
|
||||
prevDisplaySet.displaySetInstanceUID ||
|
||||
displaySet.SOPInstanceUID !== prevDisplaySet.SOPInstanceUID ||
|
||||
displaySet.frameIndex !== prevDisplaySet.frameIndex
|
||||
) {
|
||||
@@ -194,6 +198,7 @@ class OHIFCornerstoneViewport extends Component {
|
||||
return null;
|
||||
}
|
||||
const { viewportIndex } = this.props;
|
||||
const { inconsistencyWarnings } = this.props.viewportData.displaySet;
|
||||
const {
|
||||
imageIds,
|
||||
currentImageIdIndex,
|
||||
@@ -219,7 +224,7 @@ class OHIFCornerstoneViewport extends Component {
|
||||
const { displaySet } = this.props.viewportData;
|
||||
const { StudyInstanceUID } = displaySet;
|
||||
|
||||
if (currentImageIdIndex > 0) {
|
||||
if (currentImageIdIndex >= 0) {
|
||||
this.props.onNewImage({
|
||||
StudyInstanceUID,
|
||||
SOPInstanceUID: sopInstanceUid,
|
||||
@@ -229,18 +234,29 @@ class OHIFCornerstoneViewport extends Component {
|
||||
}
|
||||
};
|
||||
|
||||
const warningsOverlay = props => {
|
||||
return (
|
||||
<OHIFCornerstoneViewportOverlay
|
||||
{...props}
|
||||
inconsistencyWarnings={inconsistencyWarnings}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
<ConnectedCornerstoneViewport
|
||||
viewportIndex={viewportIndex}
|
||||
imageIds={imageIds}
|
||||
imageIdIndex={currentImageIdIndex}
|
||||
onNewImage={newImageHandler}
|
||||
onNewImageDebounceTime={700}
|
||||
onNewImageDebounced={newImageHandler}
|
||||
onNewImageDebounceTime={300}
|
||||
viewportOverlayComponent={warningsOverlay}
|
||||
stackPrefetch={this.props.stackPrefetch}
|
||||
isStackPrefetchEnabled={this.props.isStackPrefetchEnabled}
|
||||
// ~~ Connected (From REDUX)
|
||||
// frameRate={frameRate}
|
||||
// isPlaying={false}
|
||||
// isStackPrefetchEnabled={true}
|
||||
// onElementEnabled={() => {}}
|
||||
// setViewportActive{() => {}}
|
||||
{...this.props.customProps}
|
||||
|
||||
@@ -268,6 +268,7 @@ const commandsModule = ({ servicesManager }) => {
|
||||
SOPInstanceUID,
|
||||
frameIndex,
|
||||
activeViewportIndex,
|
||||
refreshViewports = true,
|
||||
}) => {
|
||||
const study = studyMetadataManager.get(StudyInstanceUID);
|
||||
|
||||
@@ -278,6 +279,10 @@ const commandsModule = ({ servicesManager }) => {
|
||||
);
|
||||
});
|
||||
|
||||
if (!displaySet) {
|
||||
return;
|
||||
}
|
||||
|
||||
displaySet.SOPInstanceUID = SOPInstanceUID;
|
||||
displaySet.frameIndex = frameIndex;
|
||||
|
||||
@@ -285,7 +290,9 @@ const commandsModule = ({ servicesManager }) => {
|
||||
setViewportSpecificData(activeViewportIndex, displaySet)
|
||||
);
|
||||
|
||||
refreshCornerstoneViewports();
|
||||
if (refreshViewports) {
|
||||
refreshCornerstoneViewports();
|
||||
}
|
||||
},
|
||||
};
|
||||
|
||||
|
||||
@@ -0,0 +1,69 @@
|
||||
.imageViewerViewport.empty ~ .OHIFCornerstoneViewportOverlay {
|
||||
display: none;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay {
|
||||
color: #9ccef9;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .overlay-element {
|
||||
position: absolute;
|
||||
font-weight: 400;
|
||||
text-shadow: 1px 1px #000;
|
||||
pointer-events: none;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .top-left {
|
||||
top: 20px;
|
||||
left: 20px;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .top-center {
|
||||
top: 20px;
|
||||
padding-top: 20px;
|
||||
width: 100%;
|
||||
text-align: center;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .top-right {
|
||||
top: 20px;
|
||||
right: 20px;
|
||||
text-align: right;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .bottom-left {
|
||||
bottom: 20px;
|
||||
left: 20px;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .bottom-left2 {
|
||||
bottom: 140px;
|
||||
left: 20px;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .bottom-right {
|
||||
bottom: 20px;
|
||||
right: 20px;
|
||||
text-align: right;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay.controlsVisible .topright,
|
||||
.OHIFCornerstoneViewportOverlay.controlsVisible .bottomright {
|
||||
right: calc(20px + 19px);
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .warning {
|
||||
position: absolute;
|
||||
font-weight: 400;
|
||||
text-shadow: 1px 1px #000;
|
||||
pointer-events: inherit;
|
||||
}
|
||||
|
||||
.OHIFCornerstoneViewportOverlay .warning svg {
|
||||
opacity: 1;
|
||||
color: #e29e4a;
|
||||
fill: #e29e4a;
|
||||
stroke: #e29e4a;
|
||||
width: 32px;
|
||||
height: 28px;
|
||||
}
|
||||
|
||||
.OHIFCornerstoneViewportOverlay svg {
|
||||
color: #9ccef9;
|
||||
fill: #9ccef9;
|
||||
stroke: #9ccef9;
|
||||
background-color: transparent;
|
||||
margin: 2px;
|
||||
width: 18px;
|
||||
height: 18px;
|
||||
}
|
||||
@@ -0,0 +1,167 @@
|
||||
import { PureComponent } from 'react';
|
||||
import React from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import './OHIFCornerstoneViewportOverlay.css';
|
||||
import {
|
||||
isValidNumber,
|
||||
formatNumberPrecision,
|
||||
formatDICOMDate,
|
||||
formatDICOMTime,
|
||||
formatPN,
|
||||
getCompression
|
||||
} from '../utils/formatStudy';
|
||||
import classNames from 'classnames';
|
||||
import { Icon } from '@ohif/ui/src/elements/Icon';
|
||||
import { Tooltip } from '@ohif/ui/src/components/tooltip';
|
||||
import { OverlayTrigger } from '@ohif/ui/src/components/overlayTrigger';
|
||||
|
||||
class OHIFCornerstoneViewportOverlay extends PureComponent {
|
||||
static propTypes = {
|
||||
scale: PropTypes.number.isRequired,
|
||||
windowWidth: PropTypes.oneOfType([
|
||||
PropTypes.number.isRequired,
|
||||
PropTypes.string.isRequired,
|
||||
]),
|
||||
windowCenter: PropTypes.oneOfType([
|
||||
PropTypes.number.isRequired,
|
||||
PropTypes.string.isRequired,
|
||||
]),
|
||||
imageId: PropTypes.string.isRequired,
|
||||
imageIndex: PropTypes.number.isRequired,
|
||||
stackSize: PropTypes.number.isRequired,
|
||||
inconsistencyWarnings: PropTypes.array.isRequired
|
||||
};
|
||||
|
||||
render() {
|
||||
const { imageId, scale, windowWidth, windowCenter, inconsistencyWarnings } = this.props;
|
||||
|
||||
if (!imageId) {
|
||||
return null;
|
||||
}
|
||||
|
||||
const zoomPercentage = formatNumberPrecision(scale * 100, 0);
|
||||
const seriesMetadata =
|
||||
cornerstone.metaData.get('generalSeriesModule', imageId) || {};
|
||||
const imagePlaneModule =
|
||||
cornerstone.metaData.get('imagePlaneModule', imageId) || {};
|
||||
const { rows, columns, sliceThickness, sliceLocation } = imagePlaneModule;
|
||||
const { seriesNumber, seriesDescription } = seriesMetadata;
|
||||
|
||||
const generalStudyModule =
|
||||
cornerstone.metaData.get('generalStudyModule', imageId) || {};
|
||||
const { studyDate, studyTime, studyDescription } = generalStudyModule;
|
||||
|
||||
const patientModule =
|
||||
cornerstone.metaData.get('patientModule', imageId) || {};
|
||||
const { patientId, patientName } = patientModule;
|
||||
|
||||
const generalImageModule =
|
||||
cornerstone.metaData.get('generalImageModule', imageId) || {};
|
||||
const { instanceNumber } = generalImageModule;
|
||||
|
||||
const cineModule = cornerstone.metaData.get('cineModule', imageId) || {};
|
||||
const { frameTime } = cineModule;
|
||||
|
||||
const frameRate = formatNumberPrecision(1000 / frameTime, 1);
|
||||
const compression = getCompression(imageId);
|
||||
const wwwc = `W: ${
|
||||
windowWidth.toFixed ? windowWidth.toFixed(0) : windowWidth
|
||||
} L: ${windowWidth.toFixed ? windowCenter.toFixed(0) : windowCenter}`;
|
||||
const imageDimensions = `${columns} x ${rows}`;
|
||||
|
||||
const { imageIndex, stackSize } = this.props;
|
||||
|
||||
const inconsistencyWarningsOn = inconsistencyWarnings && inconsistencyWarnings.length !== 0 ? true : false;
|
||||
const getWarningContent = (warningList) => {
|
||||
if (Array.isArray(warningList)) {
|
||||
const listedWarnings = warningList.map((warn, index) => {
|
||||
return <li key={index}>{warn}</li>;
|
||||
});
|
||||
|
||||
return <ol>{listedWarnings}</ol>;
|
||||
} else {
|
||||
return <React.Fragment>{warningList}</React.Fragment>;
|
||||
}
|
||||
};
|
||||
|
||||
const getWarningInfo = (seriesNumber, inconsistencyWarnings) => {
|
||||
return(
|
||||
<React.Fragment>
|
||||
{inconsistencyWarnings.length != 0 ? (
|
||||
<OverlayTrigger
|
||||
key={seriesNumber}
|
||||
placement="left"
|
||||
overlay={
|
||||
<Tooltip
|
||||
placement="left"
|
||||
className="in tooltip-warning"
|
||||
id="tooltip-left"
|
||||
>
|
||||
<div className="warningTitle">Series Inconsistencies</div>
|
||||
<div className="warningContent">{getWarningContent(inconsistencyWarnings)}</div>
|
||||
</Tooltip>
|
||||
}
|
||||
>
|
||||
<div className={classNames('warning')}>
|
||||
<span className="warning-icon">
|
||||
<Icon name="exclamation-triangle" />
|
||||
</span>
|
||||
</div>
|
||||
</OverlayTrigger>
|
||||
) : (
|
||||
<React.Fragment></React.Fragment>
|
||||
)}
|
||||
</React.Fragment>
|
||||
);
|
||||
};
|
||||
|
||||
const normal = (
|
||||
<React.Fragment>
|
||||
<div className="top-left overlay-element">
|
||||
<div>{formatPN(patientName)}</div>
|
||||
<div>{patientId}</div>
|
||||
</div>
|
||||
<div className="top-right overlay-element">
|
||||
<div>{studyDescription}</div>
|
||||
<div>
|
||||
{formatDICOMDate(studyDate)} {formatDICOMTime(studyTime)}
|
||||
</div>
|
||||
</div>
|
||||
<div className="bottom-right overlay-element">
|
||||
<div>Zoom: {zoomPercentage}%</div>
|
||||
<div>{wwwc}</div>
|
||||
<div className="compressionIndicator">{compression}</div>
|
||||
</div>
|
||||
<div className="bottom-left2 warning">
|
||||
<div>{inconsistencyWarningsOn ? getWarningInfo(seriesNumber, inconsistencyWarnings) : ''}</div>
|
||||
</div>
|
||||
<div className="bottom-left overlay-element">
|
||||
<div>{seriesNumber >= 0 ? `Ser: ${seriesNumber}` : ''}</div>
|
||||
<div>
|
||||
{stackSize > 1
|
||||
? `Img: ${instanceNumber} ${imageIndex}/${stackSize}`
|
||||
: ''}
|
||||
</div>
|
||||
<div>
|
||||
{frameRate >= 0 ? `${formatNumberPrecision(frameRate, 2)} FPS` : ''}
|
||||
<div>{imageDimensions}</div>
|
||||
<div>
|
||||
{isValidNumber(sliceLocation)
|
||||
? `Loc: ${formatNumberPrecision(sliceLocation, 2)} mm `
|
||||
: ''}
|
||||
{sliceThickness
|
||||
? `Thick: ${formatNumberPrecision(sliceThickness, 2)} mm`
|
||||
: ''}
|
||||
</div>
|
||||
<div>{seriesDescription}</div>
|
||||
</div>
|
||||
</div>
|
||||
</React.Fragment>
|
||||
);
|
||||
|
||||
return <div className="OHIFCornerstoneViewportOverlay">{normal}</div>;
|
||||
}
|
||||
}
|
||||
|
||||
export default OHIFCornerstoneViewportOverlay;
|
||||
@@ -36,13 +36,29 @@ export default {
|
||||
preRegistration({ servicesManager, configuration = {} }) {
|
||||
init({ servicesManager, configuration });
|
||||
},
|
||||
getViewportModule({ commandsManager }) {
|
||||
getViewportModule({ commandsManager, appConfig }) {
|
||||
const ExtendedOHIFCornerstoneViewport = props => {
|
||||
/**
|
||||
* TODO: This appears to be used to set the redux parameters for
|
||||
* the viewport when new images are loaded. It's very ugly
|
||||
* and we should remove it.
|
||||
*/
|
||||
const onNewImageHandler = jumpData => {
|
||||
/** Do not trigger all viewports to render unnecessarily */
|
||||
jumpData.refreshViewports = false;
|
||||
commandsManager.runCommand('jumpToImage', jumpData);
|
||||
};
|
||||
|
||||
const { studyPrefetcher } = appConfig;
|
||||
const isStackPrefetchEnabled =
|
||||
studyPrefetcher && !studyPrefetcher.enabled;
|
||||
|
||||
return (
|
||||
<OHIFCornerstoneViewport {...props} onNewImage={onNewImageHandler} />
|
||||
<OHIFCornerstoneViewport
|
||||
{...props}
|
||||
onNewImage={onNewImageHandler}
|
||||
isStackPrefetchEnabled={isStackPrefetchEnabled}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
|
||||
@@ -37,7 +37,14 @@ export default function init({ servicesManager, configuration }) {
|
||||
}
|
||||
};
|
||||
|
||||
const { csToolsConfig } = configuration;
|
||||
const {
|
||||
csToolsConfig,
|
||||
stackPrefetch = {
|
||||
maxImagesToPrefetch: Infinity,
|
||||
preserveExistingPool: false,
|
||||
maxSimultaneousRequests: 20,
|
||||
},
|
||||
} = configuration;
|
||||
const metadataProvider = OHIF.cornerstone.metadataProvider;
|
||||
|
||||
cornerstone.metaData.addProvider(
|
||||
@@ -52,7 +59,7 @@ export default function init({ servicesManager, configuration }) {
|
||||
autoResizeViewports: false,
|
||||
};
|
||||
|
||||
initCornerstoneTools(defaultCsToolsConfig);
|
||||
initCornerstoneTools({ ...defaultCsToolsConfig, ...stackPrefetch });
|
||||
|
||||
const toolsGroupedByType = {
|
||||
touch: [csTools.PanMultiTouchTool, csTools.ZoomTouchPinchTool],
|
||||
|
||||
@@ -37,8 +37,8 @@ export default function(configuration = {}) {
|
||||
|
||||
// Configure stack prefetch
|
||||
cornerstoneTools.stackPrefetch.setConfiguration({
|
||||
maxImagesToPrefetch: Infinity,
|
||||
preserveExistingPool: false,
|
||||
maxSimultaneousRequests: 20,
|
||||
maxImagesToPrefetch: configuration.maxImagesToPrefetch,
|
||||
preserveExistingPool: configuration.preserveExistingPool,
|
||||
maxSimultaneousRequests: configuration.maxSimultaneousRequests,
|
||||
});
|
||||
}
|
||||
@@ -0,0 +1,109 @@
|
||||
import moment from 'moment';
|
||||
|
||||
/**
|
||||
* Checks if value is valid.
|
||||
*
|
||||
* @param {number} value
|
||||
* @returns {boolean} is valid.
|
||||
*/
|
||||
function isValidNumber(value) {
|
||||
return typeof value === 'number' && !isNaN(value);
|
||||
}
|
||||
|
||||
/**
|
||||
* Formats number precision.
|
||||
*
|
||||
* @param {number} number
|
||||
* @param {number} precision
|
||||
* @returns {number} formatted number.
|
||||
*/
|
||||
function formatNumberPrecision(number, precision) {
|
||||
if (number !== null) {
|
||||
return parseFloat(number).toFixed(precision);
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Formats DICOM date.
|
||||
*
|
||||
* @param {string} date
|
||||
* @param {string} strFormat
|
||||
* @returns {string} formatted date.
|
||||
*/
|
||||
function formatDICOMDate(date, strFormat = 'MMM D, YYYY') {
|
||||
return moment(date, 'YYYYMMDD').format(strFormat);
|
||||
}
|
||||
|
||||
/**
|
||||
* DICOM Time is stored as HHmmss.SSS, where:
|
||||
* HH 24 hour time:
|
||||
* m mm 0..59 Minutes
|
||||
* s ss 0..59 Seconds
|
||||
* S SS SSS 0..999 Fractional seconds
|
||||
*
|
||||
* Goal: '24:12:12'
|
||||
*
|
||||
* @param {*} time
|
||||
* @param {string} strFormat
|
||||
* @returns {string} formatted name.
|
||||
*/
|
||||
function formatDICOMTime(time, strFormat = 'HH:mm:ss') {
|
||||
return moment(time, 'HH:mm:ss').format(strFormat);
|
||||
}
|
||||
|
||||
/**
|
||||
* Formats a patient name for display purposes
|
||||
*
|
||||
* @param {string} name
|
||||
* @returns {string} formatted name.
|
||||
*/
|
||||
function formatPN(name) {
|
||||
if (!name) {
|
||||
return;
|
||||
}
|
||||
|
||||
// Convert the first ^ to a ', '. String.replace() only affects
|
||||
// the first appearance of the character.
|
||||
const commaBetweenFirstAndLast = name.replace('^', ', ');
|
||||
|
||||
// Replace any remaining '^' characters with spaces
|
||||
const cleaned = commaBetweenFirstAndLast.replace(/\^/g, ' ');
|
||||
|
||||
// Trim any extraneous whitespace
|
||||
return cleaned.trim();
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets compression type
|
||||
*
|
||||
* @param {number} imageId
|
||||
* @returns {string} comrpession type.
|
||||
*/
|
||||
function getCompression(imageId) {
|
||||
const generalImageModule =
|
||||
cornerstone.metaData.get('generalImageModule', imageId) || {};
|
||||
const {
|
||||
lossyImageCompression,
|
||||
lossyImageCompressionRatio,
|
||||
lossyImageCompressionMethod,
|
||||
} = generalImageModule;
|
||||
|
||||
if (lossyImageCompression === '01' && lossyImageCompressionRatio !== '') {
|
||||
const compressionMethod = lossyImageCompressionMethod || 'Lossy: ';
|
||||
const compressionRatio = formatNumberPrecision(
|
||||
lossyImageCompressionRatio,
|
||||
2
|
||||
);
|
||||
return compressionMethod + compressionRatio + ' : 1';
|
||||
}
|
||||
|
||||
return 'Lossless / Uncompressed';
|
||||
}
|
||||
|
||||
export { isValidNumber,
|
||||
formatNumberPrecision,
|
||||
formatDICOMDate,
|
||||
formatDICOMTime,
|
||||
formatPN,
|
||||
getCompression
|
||||
};
|
||||
@@ -3,6 +3,52 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.3.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.3.0...@ohif/extension-debugging@0.3.1) (2021-12-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-debugging
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.3.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.2.2...@ohif/extension-debugging@0.3.0) (2021-09-23)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.2.1...@ohif/extension-debugging@0.2.2) (2021-06-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-debugging
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.2.0...@ohif/extension-debugging@0.2.1) (2021-03-19)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-debugging
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.2.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.1.6...@ohif/extension-debugging@0.2.0) (2021-03-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **log:** add new log service ([14d6454](https://github.com/OHIF/Viewers/commit/14d6454eafaa2ccb50e133c2945c9558052ea27e))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.1.5...@ohif/extension-debugging@0.1.6) (2020-10-06)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-debugging
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-debugging",
|
||||
"version": "0.1.6",
|
||||
"version": "0.3.1",
|
||||
"description": "OHIF extension for debugging.",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -28,13 +28,12 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^2.6.0",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"dicomweb-client": "^0.5.2"
|
||||
"dicom-parser": "^1.8.11"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"detect-browser": "5.1.1",
|
||||
"dicomweb-client": "^0.6.0",
|
||||
"dicomweb-client": "^0.8.3",
|
||||
"file-saver": "^2.0.2",
|
||||
"jszip": "^3.2.2"
|
||||
}
|
||||
|
||||
@@ -12,3 +12,15 @@
|
||||
display: flex;
|
||||
flex-direction: row;
|
||||
}
|
||||
|
||||
.debug-report-modal-container .errors {
|
||||
margin-top: 10px;
|
||||
}
|
||||
|
||||
.debug-report-modal-container .errors-container {
|
||||
border: 1px solid var(--active-color);
|
||||
border-radius: 5px;
|
||||
padding: 10px;
|
||||
overflow: scroll;
|
||||
max-height: 300px;
|
||||
}
|
||||
@@ -10,6 +10,7 @@ const DubugReportModal = ({
|
||||
extensionManager,
|
||||
mailTo,
|
||||
debugModalMessage,
|
||||
errors = [],
|
||||
}) => {
|
||||
const copyDebugDataToClipboard = () => {
|
||||
const body = getEmailBody();
|
||||
@@ -131,6 +132,19 @@ const DubugReportModal = ({
|
||||
{getLayout(viewports)}
|
||||
</table>
|
||||
</div>
|
||||
<div className="errors">
|
||||
<h3>Errors ({errors.length})</h3>
|
||||
<div className="errors-container">
|
||||
{errors.map(error => {
|
||||
return (
|
||||
<div>
|
||||
<pre>Message: {error.message}</pre>
|
||||
{error.error && <pre>Stack: {error.error.stack}</pre>}
|
||||
</div>
|
||||
);
|
||||
})}
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
@@ -1,4 +1,6 @@
|
||||
import OHIF from '@ohif/core';
|
||||
import { useLogger } from '@ohif/ui';
|
||||
|
||||
import {
|
||||
save,
|
||||
upload,
|
||||
@@ -95,6 +97,7 @@ export function getCommands(context, servicesManager, extensionManager) {
|
||||
const { UIModalService } = servicesManager.services;
|
||||
|
||||
const WrappedDebugReportModal = function() {
|
||||
const { state: loggerState } = useLogger();
|
||||
return (
|
||||
<DebugReportModal
|
||||
viewports={viewports}
|
||||
@@ -103,6 +106,7 @@ export function getCommands(context, servicesManager, extensionManager) {
|
||||
extensionManager={extensionManager}
|
||||
mailTo={state.mailTo}
|
||||
debugModalMessage={state.debugModalMessage}
|
||||
errors={loggerState.errors}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
@@ -1,3 +1,3 @@
|
||||
const state = { mailTo: undefined, message: undefined };
|
||||
const state = { mailTo: undefined, debugModalMessage: undefined };
|
||||
|
||||
export default state;
|
||||
@@ -3,6 +3,113 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.3.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.13...@ohif/extension-dicom-html@1.3.14) (2021-12-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.12...@ohif/extension-dicom-html@1.3.13) (2021-10-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.11...@ohif/extension-dicom-html@1.3.12) (2021-10-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.10...@ohif/extension-dicom-html@1.3.11) (2021-09-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.9...@ohif/extension-dicom-html@1.3.10) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.8...@ohif/extension-dicom-html@1.3.9) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.7...@ohif/extension-dicom-html@1.3.8) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.6...@ohif/extension-dicom-html@1.3.7) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.5...@ohif/extension-dicom-html@1.3.6) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.4...@ohif/extension-dicom-html@1.3.5) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.3...@ohif/extension-dicom-html@1.3.4) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.2...@ohif/extension-dicom-html@1.3.3) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.1...@ohif/extension-dicom-html@1.3.2) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.0...@ohif/extension-dicom-html@1.3.1) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-html",
|
||||
"version": "1.3.1",
|
||||
"version": "1.3.14",
|
||||
"description": "OHIF extension for rendering structured reports to HTML",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -29,7 +29,7 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"dcmjs": "0.17.2",
|
||||
"dcmjs": "0.19.1",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
|
||||
@@ -160,7 +160,7 @@ const getContentSequence = (data, level = 1) => {
|
||||
|
||||
const root = [];
|
||||
if (header) {
|
||||
const HeaderDynamicLevel = `h${level}`;
|
||||
const HeaderDynamicLevel = `h${Math.min(level, 6)}`;
|
||||
|
||||
root.push(<HeaderDynamicLevel key={header}>{header}</HeaderDynamicLevel>);
|
||||
}
|
||||
@@ -168,6 +168,16 @@ const getContentSequence = (data, level = 1) => {
|
||||
Object.keys(data).forEach(key => {
|
||||
const value = data[key];
|
||||
|
||||
if (key === '_meta') {
|
||||
const HeaderDynamicLevel = `h3`;
|
||||
root.push(<hr key={root.length} />);
|
||||
root.push(
|
||||
<HeaderDynamicLevel key="Metadata">
|
||||
DICOM File Meta Information
|
||||
</HeaderDynamicLevel>
|
||||
);
|
||||
}
|
||||
|
||||
let content;
|
||||
if (value instanceof Object) {
|
||||
content = getContentSequence(value, level + 1);
|
||||
@@ -207,7 +217,7 @@ class DicomHtmlViewport extends Component {
|
||||
};
|
||||
|
||||
componentDidMount() {
|
||||
const dataSet = this.setContentFromByteArray(this.props.byteArray);
|
||||
this.setContentFromByteArray(this.props.byteArray);
|
||||
}
|
||||
|
||||
setContentFromByteArray(byteArray) {
|
||||
@@ -215,6 +225,7 @@ class DicomHtmlViewport extends Component {
|
||||
const dicomData = DicomMessage.readFile(arrayBuffer);
|
||||
const dataset = DicomMetaDictionary.naturalizeDataset(dicomData.dict);
|
||||
dataset._meta = DicomMetaDictionary.namifyDataset(dicomData.meta);
|
||||
dataset._meta = DicomMetaDictionary.naturalizeDataset(dataset._meta);
|
||||
|
||||
const mainData = getMainData(dataset);
|
||||
const contentSequence = getContentSequence(dataset);
|
||||
|
||||
@@ -9,6 +9,7 @@ const SOP_CLASS_UIDS = {
|
||||
MAMMOGRAPHY_CAD_SR: '1.2.840.10008.5.1.4.1.1.88.50',
|
||||
CHEST_CAD_SR: '1.2.840.10008.5.1.4.1.1.88.65',
|
||||
X_RAY_RADIATION_DOSE_SR: '1.2.840.10008.5.1.4.1.1.88.67',
|
||||
ACQUISITION_CONTEXT_SR_STORAGE: '1.2.840.10008.5.1.4.1.1.88.71',
|
||||
};
|
||||
|
||||
const sopClassUIDs = Object.values(SOP_CLASS_UIDS);
|
||||
|
||||
@@ -3,6 +3,17 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
# [0.52.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.51.4...@ohif/extension-dicom-microscopy@0.52.0) (2021-03-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **log:** add new log service ([14d6454](https://github.com/OHIF/Viewers/commit/14d6454eafaa2ccb50e133c2945c9558052ea27e))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.51.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.51.3...@ohif/extension-dicom-microscopy@0.51.4) (2021-01-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-microscopy",
|
||||
"version": "0.51.4",
|
||||
"version": "0.52.0",
|
||||
"description": "OHIF extension for Dicom Microscopy",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -70,12 +70,18 @@ class DicomMicroscopyViewport extends Component {
|
||||
});
|
||||
} catch (error) {
|
||||
console.error('[Microscopy Viewer] Failed to load:', error);
|
||||
const { UINotificationService } = this.props.servicesManager.services;
|
||||
const {
|
||||
UINotificationService,
|
||||
LoggerService,
|
||||
} = this.props.servicesManager.services;
|
||||
if (UINotificationService) {
|
||||
const message =
|
||||
'Failed to load viewport. Please check that you have hardware acceleration enabled.';
|
||||
LoggerService.error({ error, message });
|
||||
UINotificationService.show({
|
||||
autoClose: false,
|
||||
title: 'Microscopy Viewport',
|
||||
message:
|
||||
'Failed to load viewport. Please check that you have hardware acceleration enabled.',
|
||||
message,
|
||||
type: 'error',
|
||||
});
|
||||
}
|
||||
|
||||
@@ -3,6 +3,25 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.1.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.1.0...@ohif/extension-dicom-pdf@1.1.1) (2021-12-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.1.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.0.6...@ohif/extension-dicom-pdf@1.1.0) (2021-09-23)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.0.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.0.5...@ohif/extension-dicom-pdf@1.0.6) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-pdf",
|
||||
"version": "1.0.6",
|
||||
"version": "1.1.1",
|
||||
"description": "OHIF extension for Dicom PDF",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -29,7 +29,7 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"dicom-parser": "^1.8.11",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
|
||||
@@ -3,6 +3,132 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.7.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.3...@ohif/extension-dicom-rt@0.7.4) (2021-12-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.7.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.2...@ohif/extension-dicom-rt@0.7.3) (2021-10-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.7.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.1...@ohif/extension-dicom-rt@0.7.2) (2021-10-06)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.7.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.7.0...@ohif/extension-dicom-rt@0.7.1) (2021-09-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.7.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.14...@ohif/extension-dicom-rt@0.7.0) (2021-09-23)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.13...@ohif/extension-dicom-rt@0.6.14) (2021-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.12...@ohif/extension-dicom-rt@0.6.13) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.11...@ohif/extension-dicom-rt@0.6.12) (2021-05-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.10...@ohif/extension-dicom-rt@0.6.11) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.9...@ohif/extension-dicom-rt@0.6.10) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.8...@ohif/extension-dicom-rt@0.6.9) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.7...@ohif/extension-dicom-rt@0.6.8) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.6...@ohif/extension-dicom-rt@0.6.7) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.5...@ohif/extension-dicom-rt@0.6.6) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.4...@ohif/extension-dicom-rt@0.6.5) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.3...@ohif/extension-dicom-rt@0.6.4) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-rt",
|
||||
"version": "0.6.4",
|
||||
"version": "0.7.4",
|
||||
"description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -29,9 +29,9 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"dcmjs": "0.17.2",
|
||||
"cornerstone-core": "^2.6.1",
|
||||
"cornerstone-tools": "^6.0.6",
|
||||
"dcmjs": "0.19.1",
|
||||
"gl-matrix": "^3.3.0",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
|
||||
@@ -71,8 +71,8 @@ const OHIFDicomRTStructSopClassHandler = {
|
||||
}
|
||||
}
|
||||
|
||||
rtStructDisplaySet.getSourceDisplaySet = function (studies) {
|
||||
return getSourceDisplaySet(studies, rtStructDisplaySet);
|
||||
rtStructDisplaySet.getSourceDisplaySet = function (studies, activateLabelMap = true) {
|
||||
return getSourceDisplaySet(studies, rtStructDisplaySet, activateLabelMap);
|
||||
};
|
||||
|
||||
rtStructDisplaySet.load = function (referencedDisplaySet, studies) {
|
||||
|
||||
@@ -1,38 +1,14 @@
|
||||
export default function getSourceDisplaySet(studies, rtStructDisplaySet) {
|
||||
const referencedDisplaySet = _getReferencedDisplaySet(
|
||||
import { metadata } from '@ohif/core';
|
||||
|
||||
export default function getSourceDisplaySet(studies, rtStructDisplaySet, activateLabelMap = true) {
|
||||
const referencedDisplaySet = metadata.StudyMetadata.getReferencedDisplaySet(
|
||||
rtStructDisplaySet,
|
||||
studies
|
||||
);
|
||||
|
||||
rtStructDisplaySet.load(referencedDisplaySet, studies);
|
||||
if (activateLabelMap) {
|
||||
rtStructDisplaySet.load(referencedDisplaySet, studies);
|
||||
}
|
||||
|
||||
return referencedDisplaySet;
|
||||
}
|
||||
|
||||
const _getReferencedDisplaySet = (rtStructDisplaySet, studies) => {
|
||||
let allDisplaySets = [];
|
||||
|
||||
studies.forEach(study => {
|
||||
allDisplaySets = allDisplaySets.concat(study.displaySets);
|
||||
});
|
||||
|
||||
const otherDisplaySets = allDisplaySets.filter(
|
||||
ds => ds.displaySetInstanceUID !== rtStructDisplaySet.displaySetInstanceUID
|
||||
);
|
||||
|
||||
const ReferencedSeriesSequence = Array.isArray(
|
||||
rtStructDisplaySet.metadata.ReferencedSeriesSequence
|
||||
)
|
||||
? rtStructDisplaySet.metadata.ReferencedSeriesSequence
|
||||
: [rtStructDisplaySet.metadata.ReferencedSeriesSequence];
|
||||
|
||||
const referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
|
||||
ReferencedSeries => ReferencedSeries.SeriesInstanceUID
|
||||
);
|
||||
|
||||
const referencedDisplaySet = otherDisplaySets.find(ds =>
|
||||
referencedSeriesInstanceUIDs.includes(ds.SeriesInstanceUID)
|
||||
);
|
||||
|
||||
return referencedDisplaySet;
|
||||
};
|
||||
@@ -1,11 +1,12 @@
|
||||
import React from 'react';
|
||||
import { utils } from '@ohif/core';
|
||||
|
||||
import init from './init.js';
|
||||
import sopClassHandlerModule from './OHIFDicomRTStructSopClassHandler';
|
||||
import id from './id.js';
|
||||
import RTPanel from './components/RTPanel/RTPanel';
|
||||
import { version } from '../package.json';
|
||||
|
||||
import { utils } from '@ohif/core';
|
||||
const { studyMetadataManager } = utils;
|
||||
|
||||
export default {
|
||||
@@ -42,29 +43,60 @@ export default {
|
||||
);
|
||||
};
|
||||
|
||||
const RTPanelTabChangedEvent = 'rt-panel-tab-updated';
|
||||
|
||||
/**
|
||||
* Trigger's an event to update the state of the panel's RoundedButtonGroup.
|
||||
*
|
||||
* This is required to avoid extension state
|
||||
* coupling with the viewer's ToolbarRow component.
|
||||
*
|
||||
* @param {object} data
|
||||
*/
|
||||
const triggerRTPanelUpdatedEvent = data => {
|
||||
const event = new CustomEvent(RTPanelTabChangedEvent, {
|
||||
detail: data,
|
||||
});
|
||||
document.dispatchEvent(event);
|
||||
};
|
||||
|
||||
const onRTStructsLoaded = ({ detail }) => {
|
||||
const { rtStructDisplaySet, referencedDisplaySet } = detail;
|
||||
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
rtStructDisplaySet.StudyInstanceUID
|
||||
);
|
||||
const referencedDisplaysets = studyMetadata.getDerivedDatasets({
|
||||
referencedSeriesInstanceUID: referencedDisplaySet.SeriesInstanceUID,
|
||||
Modality: 'RTSTRUCT',
|
||||
});
|
||||
triggerRTPanelUpdatedEvent({
|
||||
badgeNumber: referencedDisplaysets.length,
|
||||
target: 'rt-panel',
|
||||
});
|
||||
};
|
||||
|
||||
document.addEventListener('extensiondicomrtrtloaded', onRTStructsLoaded);
|
||||
|
||||
return {
|
||||
menuOptions: [
|
||||
{
|
||||
icon: 'list',
|
||||
label: 'RTSTRUCT',
|
||||
target: 'rt-panel',
|
||||
stateEvent: RTPanelTabChangedEvent,
|
||||
isDisabled: (studies, activeViewport) => {
|
||||
if (!studies) {
|
||||
return true;
|
||||
}
|
||||
|
||||
if (activeViewport) {
|
||||
const study = studies.find(
|
||||
s => s.StudyInstanceUID === activeViewport.StudyInstanceUID
|
||||
);
|
||||
const ds = study.displaySets.find(
|
||||
ds =>
|
||||
ds.displaySetInstanceUID ===
|
||||
activeViewport.displaySetInstanceUID
|
||||
);
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
activeViewport.StudyInstanceUID
|
||||
);
|
||||
if (!studyMetadata) {
|
||||
return;
|
||||
}
|
||||
const referencedDisplaySets = studyMetadata.getDerivedDatasets({
|
||||
referencedSeriesInstanceUID: activeViewport.SeriesInstanceUID,
|
||||
Modality: 'RTSTRUCT',
|
||||
@@ -75,6 +107,10 @@ export default {
|
||||
['RTSTRUCT'].includes(ds.Modality)
|
||||
)
|
||||
) {
|
||||
triggerRTPanelUpdatedEvent({
|
||||
badgeNumber: referencedDisplaySets.length,
|
||||
target: 'rt-panel',
|
||||
});
|
||||
return false;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -90,11 +90,11 @@ export default async function loadRTStruct(
|
||||
const sopInstanceUID = ContourImageSequence
|
||||
? ContourImageSequence.ReferencedSOPInstanceUID
|
||||
: _getClosestSOPInstanceUID(
|
||||
ContourData,
|
||||
ContourGeometricType,
|
||||
NumberOfContourPoints,
|
||||
imageIdSopInstanceUidPairs
|
||||
);
|
||||
ContourData,
|
||||
ContourGeometricType,
|
||||
NumberOfContourPoints,
|
||||
imageIdSopInstanceUidPairs
|
||||
);
|
||||
const imageId = _getImageId(imageIdSopInstanceUidPairs, sopInstanceUID);
|
||||
|
||||
if (!imageId) {
|
||||
@@ -171,7 +171,13 @@ export default async function loadRTStruct(
|
||||
* allows us to easily watch the module or the rtstruct loading process in any other component
|
||||
* without subscribing to external events.
|
||||
*/
|
||||
const event = new CustomEvent('extensiondicomrtrtloaded');
|
||||
const event = new CustomEvent('extensiondicomrtrtloaded', {
|
||||
detail: {
|
||||
rtStructDisplaySet,
|
||||
referencedDisplaySet,
|
||||
studies,
|
||||
},
|
||||
});
|
||||
document.dispatchEvent(event);
|
||||
}
|
||||
|
||||
@@ -299,7 +305,9 @@ const _getImageId = (imageIdSopInstanceUidPairs, sopInstanceUID) => {
|
||||
imageIdSopInstanceUidPairsEntry.sopInstanceUID === sopInstanceUID
|
||||
);
|
||||
|
||||
return imageIdSopInstanceUidPairsEntry ? imageIdSopInstanceUidPairsEntry.imageId : null;
|
||||
return imageIdSopInstanceUidPairsEntry
|
||||
? imageIdSopInstanceUidPairsEntry.imageId
|
||||
: null;
|
||||
};
|
||||
|
||||
function _getImageIdSopInstanceUidPairsForDisplaySet(
|
||||
|
||||
@@ -3,6 +3,175 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.7.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.4...@ohif/extension-dicom-segmentation@0.7.5) (2021-12-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.7.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.3...@ohif/extension-dicom-segmentation@0.7.4) (2021-10-27)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.7.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.2...@ohif/extension-dicom-segmentation@0.7.3) (2021-10-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.7.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.1...@ohif/extension-dicom-segmentation@0.7.2) (2021-10-06)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.7.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.7.0...@ohif/extension-dicom-segmentation@0.7.1) (2021-09-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.7.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.11...@ohif/extension-dicom-segmentation@0.7.0) (2021-09-23)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.10...@ohif/extension-dicom-segmentation@0.6.11) (2021-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.9...@ohif/extension-dicom-segmentation@0.6.10) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.8...@ohif/extension-dicom-segmentation@0.6.9) (2021-05-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.7...@ohif/extension-dicom-segmentation@0.6.8) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.6...@ohif/extension-dicom-segmentation@0.6.7) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.5...@ohif/extension-dicom-segmentation@0.6.6) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.4...@ohif/extension-dicom-segmentation@0.6.5) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.3...@ohif/extension-dicom-segmentation@0.6.4) (2021-04-16)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.2...@ohif/extension-dicom-segmentation@0.6.3) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.1...@ohif/extension-dicom-segmentation@0.6.2) (2021-03-31)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.0...@ohif/extension-dicom-segmentation@0.6.1) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.6.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.5.4...@ohif/extension-dicom-segmentation@0.6.0) (2021-03-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **log:** add new log service ([14d6454](https://github.com/OHIF/Viewers/commit/14d6454eafaa2ccb50e133c2945c9558052ea27e))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.5.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.5.3...@ohif/extension-dicom-segmentation@0.5.4) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.5.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.5.2...@ohif/extension-dicom-segmentation@0.5.3) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.5.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.5.1...@ohif/extension-dicom-segmentation@0.5.2) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-segmentation",
|
||||
"version": "0.5.2",
|
||||
"version": "0.7.5",
|
||||
"description": "OHIF extension for viewing segmentations in the 2D MPR view",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -29,9 +29,9 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"dcmjs": "0.17.2",
|
||||
"cornerstone-core": "^2.6.1",
|
||||
"cornerstone-tools": "^6.0.6",
|
||||
"dcmjs": "0.19.1",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
|
||||
@@ -24,6 +24,7 @@ const SegmentItem = ({
|
||||
onClick,
|
||||
itemClass,
|
||||
color,
|
||||
labelmap3D,
|
||||
visible,
|
||||
onVisibilityChange,
|
||||
}) => {
|
||||
@@ -39,7 +40,7 @@ const SegmentItem = ({
|
||||
event.stopPropagation();
|
||||
const newVisibility = !isVisible;
|
||||
setIsVisible(newVisibility);
|
||||
onVisibilityChange(newVisibility, index);
|
||||
onVisibilityChange(newVisibility, index, labelmap3D);
|
||||
};
|
||||
|
||||
return (
|
||||
|
||||
+80
-20
@@ -155,7 +155,9 @@ const SegmentationPanel = ({
|
||||
|
||||
const brushStackState = getBrushStackState();
|
||||
brushStackState.activeLabelmapIndex = newLabelmapIndex;
|
||||
setState(state => ({ ...state, selectedSegmentation }));
|
||||
if (selectedSegmentation) {
|
||||
setState(state => ({ ...state, selectedSegmentation }));
|
||||
}
|
||||
|
||||
refreshViewports();
|
||||
|
||||
@@ -189,6 +191,10 @@ const SegmentationPanel = ({
|
||||
'extensiondicomsegmentationsegloaded',
|
||||
refreshSegmentations
|
||||
);
|
||||
document.addEventListener(
|
||||
'extensiondicomsegmentationsegselected',
|
||||
updateSegmentationComboBox
|
||||
);
|
||||
|
||||
/*
|
||||
* These are specific to each element;
|
||||
@@ -207,6 +213,10 @@ const SegmentationPanel = ({
|
||||
'extensiondicomsegmentationsegloaded',
|
||||
refreshSegmentations
|
||||
);
|
||||
document.removeEventListener(
|
||||
'extensiondicomsegmentationsegselected',
|
||||
updateSegmentationComboBox
|
||||
);
|
||||
cornerstoneTools.store.state.enabledElements.forEach(enabledElement =>
|
||||
enabledElement.removeEventListener(
|
||||
'cornerstonetoolslabelmapmodified',
|
||||
@@ -214,7 +224,32 @@ const SegmentationPanel = ({
|
||||
)
|
||||
);
|
||||
};
|
||||
}, [activeIndex, viewports]);
|
||||
}, [
|
||||
activeIndex,
|
||||
updateSegmentationComboBox,
|
||||
viewports,
|
||||
]);
|
||||
|
||||
const updateSegmentationComboBox = e => {
|
||||
const index = e.detail.activatedLabelmapIndex;
|
||||
if (index !== -1) {
|
||||
setState(state => ({ ...state, selectedSegmentation: index }));
|
||||
} else {
|
||||
cleanSegmentationComboBox();
|
||||
}
|
||||
};
|
||||
|
||||
const cleanSegmentationComboBox = () => {
|
||||
setState(state => ({
|
||||
...state,
|
||||
segmentsHidden: [],
|
||||
segmentNumbers: [],
|
||||
labelMapList: [],
|
||||
segmentList: [],
|
||||
isDisabled: true,
|
||||
selectedSegmentation: -1,
|
||||
}));
|
||||
};
|
||||
|
||||
const refreshSegmentations = () => {
|
||||
const activeViewport = getActiveViewport();
|
||||
@@ -277,7 +312,11 @@ const SegmentationPanel = ({
|
||||
activeViewport.SeriesInstanceUID
|
||||
);
|
||||
|
||||
return referencedSegDisplaysets.map((displaySet, index) => {
|
||||
const filteredReferencedSegDisplaysets = referencedSegDisplaysets.filter(
|
||||
segDisplay => segDisplay.loadError !== true
|
||||
);
|
||||
|
||||
return filteredReferencedSegDisplaysets.map((displaySet, index) => {
|
||||
const {
|
||||
labelmapIndex,
|
||||
originLabelMapIndex,
|
||||
@@ -289,7 +328,7 @@ const SegmentationPanel = ({
|
||||
/* Map to display representation */
|
||||
const dateStr = `${SeriesDate}:${SeriesTime}`.split('.')[0];
|
||||
const date = moment(dateStr, 'YYYYMMDD:HHmmss');
|
||||
const displayDate = date.format('ddd, MMM Do YYYY');
|
||||
const displayDate = date.format('ddd, MMM Do YYYY, h:mm:ss a');
|
||||
const displayDescription = displaySet.SeriesDescription;
|
||||
|
||||
return {
|
||||
@@ -392,23 +431,43 @@ const SegmentationPanel = ({
|
||||
return enabledElements[activeIndex].element;
|
||||
};
|
||||
|
||||
const onSegmentVisibilityChangeHandler = (isVisible, segmentNumber) => {
|
||||
/** Get all labelmaps with this segmentNumber (overlapping segments) */
|
||||
const { labelmaps3D } = getBrushStackState();
|
||||
const possibleLabelMaps3D = labelmaps3D.filter(({ labelmaps2D }) => {
|
||||
return labelmaps2D.some(({ segmentsOnLabelmap }) =>
|
||||
segmentsOnLabelmap.includes(segmentNumber)
|
||||
);
|
||||
});
|
||||
|
||||
const onSegmentVisibilityChangeHandler = (
|
||||
isVisible,
|
||||
segmentNumber,
|
||||
labelmap3D
|
||||
) => {
|
||||
let segmentsHidden = [];
|
||||
possibleLabelMaps3D.forEach(labelmap3D => {
|
||||
labelmap3D.segmentsHidden[segmentNumber] = !isVisible;
|
||||
if (labelmap3D.metadata.hasOverlapping) {
|
||||
/** Get all labelmaps with this segmentNumber and that
|
||||
* are from the same series (overlapping segments) */
|
||||
const { labelmaps3D } = getBrushStackState();
|
||||
|
||||
segmentsHidden = [
|
||||
...new Set([...segmentsHidden, ...labelmap3D.segmentsHidden]),
|
||||
];
|
||||
});
|
||||
const sameSeriesLabelMaps3D = labelmaps3D.filter(({ metadata }) => {
|
||||
return (
|
||||
labelmap3D.metadata.segmentationSeriesInstanceUID ===
|
||||
metadata.segmentationSeriesInstanceUID
|
||||
);
|
||||
});
|
||||
|
||||
const possibleLabelMaps3D = sameSeriesLabelMaps3D.filter(
|
||||
({ labelmaps2D }) => {
|
||||
return labelmaps2D.some(({ segmentsOnLabelmap }) =>
|
||||
segmentsOnLabelmap.includes(segmentNumber)
|
||||
);
|
||||
}
|
||||
);
|
||||
|
||||
possibleLabelMaps3D.forEach(labelmap3D => {
|
||||
labelmap3D.segmentsHidden[segmentNumber] = !isVisible;
|
||||
|
||||
segmentsHidden = [
|
||||
...new Set([...segmentsHidden, ...labelmap3D.segmentsHidden]),
|
||||
];
|
||||
});
|
||||
} else {
|
||||
labelmap3D.segmentsHidden[segmentNumber] = !isVisible;
|
||||
segmentsHidden = [...labelmap3D.segmentsHidden];
|
||||
}
|
||||
|
||||
setState(state => ({ ...state, segmentsHidden }));
|
||||
|
||||
@@ -475,6 +534,7 @@ const SegmentationPanel = ({
|
||||
label={segmentLabel}
|
||||
index={segmentNumber}
|
||||
color={color}
|
||||
labelmap3D={labelmap3D}
|
||||
visible={!labelmap3D.segmentsHidden[segmentIndex]}
|
||||
onVisibilityChange={onSegmentVisibilityChangeHandler}
|
||||
/>
|
||||
@@ -709,7 +769,7 @@ const _getReferencedSegDisplaysets = (StudyInstanceUID, SeriesInstanceUID) => {
|
||||
referencedDisplaysets.sort((a, b) => {
|
||||
const aNumber = Number(`${a.SeriesDate}${a.SeriesTime}`);
|
||||
const bNumber = Number(`${b.SeriesDate}${b.SeriesTime}`);
|
||||
return aNumber - bNumber;
|
||||
return bNumber - aNumber;
|
||||
});
|
||||
|
||||
return referencedDisplaysets;
|
||||
|
||||
@@ -3,7 +3,7 @@ import Select from 'react-select';
|
||||
|
||||
const SegmentationSelect = ({ value, formatOptionLabel, options }) => (
|
||||
<Select
|
||||
value={value}
|
||||
value={value === undefined ? null : value}
|
||||
formatOptionLabel={formatOptionLabel}
|
||||
styles={segmentationSelectStyles}
|
||||
options={options}
|
||||
|
||||
@@ -55,6 +55,7 @@ export default function getSopClassHandlerModule({ servicesManager }) {
|
||||
referencedDisplaySetUID: null, // Assigned when loaded.
|
||||
labelmapIndex: null, // Assigned when loaded.
|
||||
isLoaded: false,
|
||||
loadError: false,
|
||||
hasOverlapping: false,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
@@ -63,8 +64,17 @@ export default function getSopClassHandlerModule({ servicesManager }) {
|
||||
metadata,
|
||||
};
|
||||
|
||||
segDisplaySet.getSourceDisplaySet = function(studies) {
|
||||
return getSourceDisplaySet(studies, segDisplaySet);
|
||||
segDisplaySet.getSourceDisplaySet = function(
|
||||
studies,
|
||||
activateLabelMap = true,
|
||||
onDisplaySetLoadFailureHandler
|
||||
) {
|
||||
return getSourceDisplaySet(
|
||||
studies,
|
||||
segDisplaySet,
|
||||
activateLabelMap,
|
||||
onDisplaySetLoadFailureHandler
|
||||
);
|
||||
};
|
||||
|
||||
segDisplaySet.load = async function(referencedDisplaySet, studies) {
|
||||
@@ -82,57 +92,56 @@ export default function getSopClassHandlerModule({ servicesManager }) {
|
||||
StudyInstanceUID,
|
||||
referencedDisplaySet.SeriesInstanceUID
|
||||
);
|
||||
return new Promise(async (resolve, reject) => {
|
||||
let results;
|
||||
try {
|
||||
results = _parseSeg(segArrayBuffer, imageIds);
|
||||
} catch (error) {
|
||||
segDisplaySet.isLoaded = false;
|
||||
segDisplaySet.loadError = true;
|
||||
reject(error);
|
||||
}
|
||||
const {
|
||||
labelmapBufferArray,
|
||||
segMetadata,
|
||||
segmentsOnFrame,
|
||||
segmentsOnFrameArray,
|
||||
} = results;
|
||||
|
||||
let labelmapIndex;
|
||||
if (labelmapBufferArray.length > 1) {
|
||||
let labelmapIndexes = [];
|
||||
for (let i = 0; i < labelmapBufferArray.length; ++i) {
|
||||
labelmapIndexes.push(
|
||||
await loadSegmentation(
|
||||
imageIds,
|
||||
segDisplaySet,
|
||||
labelmapBufferArray[i],
|
||||
segMetadata,
|
||||
segmentsOnFrame,
|
||||
segmentsOnFrameArray[i]
|
||||
)
|
||||
);
|
||||
}
|
||||
/**
|
||||
* Since overlapping segmentations have virtual labelmaps,
|
||||
* originLabelMapIndex is used in the panel to select the correct dropdown value.
|
||||
*/
|
||||
segDisplaySet.hasOverlapping = true;
|
||||
segDisplaySet.originLabelMapIndex = labelmapIndexes[0];
|
||||
labelmapIndex = labelmapIndexes[0];
|
||||
console.warn('Overlapping segmentations!');
|
||||
} else {
|
||||
labelmapIndex = await loadSegmentation(
|
||||
imageIds,
|
||||
segDisplaySet,
|
||||
labelmapBufferArray[0],
|
||||
segMetadata,
|
||||
segmentsOnFrame,
|
||||
[]
|
||||
const results = await _parseSeg(segArrayBuffer, imageIds);
|
||||
if (results === undefined) {
|
||||
return;
|
||||
}
|
||||
const {
|
||||
labelmapBufferArray,
|
||||
segMetadata,
|
||||
segmentsOnFrame,
|
||||
segmentsOnFrameArray,
|
||||
} = results;
|
||||
let labelmapIndex;
|
||||
if (labelmapBufferArray.length > 1) {
|
||||
let labelmapIndexes = [];
|
||||
for (let i = 0; i < labelmapBufferArray.length; ++i) {
|
||||
segMetadata.segmentationSeriesInstanceUID =
|
||||
segDisplaySet.SeriesInstanceUID;
|
||||
segMetadata.hasOverlapping = true;
|
||||
labelmapIndexes.push(
|
||||
await loadSegmentation(
|
||||
imageIds,
|
||||
segDisplaySet,
|
||||
labelmapBufferArray[i],
|
||||
segMetadata,
|
||||
segmentsOnFrame,
|
||||
segmentsOnFrameArray[i]
|
||||
)
|
||||
);
|
||||
}
|
||||
resolve(labelmapIndex);
|
||||
});
|
||||
/**
|
||||
* Since overlapping segments have virtual labelmaps,
|
||||
* originLabelMapIndex is used in the panel to select the correct dropdown value.
|
||||
*/
|
||||
segDisplaySet.hasOverlapping = true;
|
||||
segDisplaySet.originLabelMapIndex = labelmapIndexes[0];
|
||||
labelmapIndex = labelmapIndexes[0];
|
||||
console.warn('Overlapping segments!');
|
||||
} else {
|
||||
segMetadata.segmentationSeriesInstanceUID =
|
||||
segDisplaySet.SeriesInstanceUID;
|
||||
segMetadata.hasOverlapping = false;
|
||||
labelmapIndex = await loadSegmentation(
|
||||
imageIds,
|
||||
segDisplaySet,
|
||||
labelmapBufferArray[0],
|
||||
segMetadata,
|
||||
segmentsOnFrame,
|
||||
[]
|
||||
);
|
||||
}
|
||||
};
|
||||
|
||||
return segDisplaySet;
|
||||
|
||||
@@ -1,88 +1,16 @@
|
||||
import setActiveLabelmap from './utils/setActiveLabelMap';
|
||||
import { classes } from '@ohif/core';
|
||||
import { metadata } from '@ohif/core';
|
||||
|
||||
const { ImageSet } = classes;
|
||||
export default function getSourceDisplaySet(studies, segDisplaySet, activateLabelMap = true, onDisplaySetLoadFailureHandler) {
|
||||
const referencedDisplaySet = metadata.StudyMetadata.getReferencedDisplaySet(segDisplaySet, studies);
|
||||
|
||||
export default function getSourceDisplaySet(studies, segDisplaySet) {
|
||||
const referencedDisplaySet = _getReferencedDisplaySet(segDisplaySet, studies);
|
||||
|
||||
setActiveLabelmap(referencedDisplaySet, studies, segDisplaySet);
|
||||
|
||||
return referencedDisplaySet;
|
||||
}
|
||||
|
||||
const _getReferencedDisplaySet = (segDisplaySet, studies) => {
|
||||
let allDisplaySets = [];
|
||||
|
||||
studies.forEach(study => {
|
||||
allDisplaySets = allDisplaySets.concat(study.displaySets);
|
||||
});
|
||||
|
||||
const otherDisplaySets = allDisplaySets.filter(
|
||||
ds => ds.displaySetInstanceUID !== segDisplaySet.displaySetInstanceUID
|
||||
);
|
||||
|
||||
const { metadata } = segDisplaySet;
|
||||
|
||||
let referencedSeriesInstanceUIDs;
|
||||
|
||||
if (metadata.ReferencedSeriesSequence) {
|
||||
const ReferencedSeriesSequence = _toArray(
|
||||
metadata.ReferencedSeriesSequence
|
||||
);
|
||||
|
||||
referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
|
||||
ReferencedSeries => ReferencedSeries.SeriesInstanceUID
|
||||
);
|
||||
} else {
|
||||
const { PerFrameFunctionalGroupsSequence } = metadata;
|
||||
|
||||
let SourceImageSequence;
|
||||
|
||||
if (metadata.SourceImageSequence) {
|
||||
SourceImageSequence = metadata.SourceImageSequence;
|
||||
} else {
|
||||
const firstFunctionalGroups = _toArray(
|
||||
PerFrameFunctionalGroupsSequence
|
||||
)[0];
|
||||
const { DerivationImageSequence } = firstFunctionalGroups;
|
||||
|
||||
SourceImageSequence = DerivationImageSequence;
|
||||
}
|
||||
|
||||
const firstSourceImage = _toArray(SourceImageSequence)[0];
|
||||
|
||||
const { ReferencedSOPInstanceUID } = firstSourceImage;
|
||||
|
||||
referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromSOPInstanceUID(
|
||||
otherDisplaySets,
|
||||
ReferencedSOPInstanceUID
|
||||
);
|
||||
let activatedLabelmapPromise;
|
||||
if (activateLabelMap) {
|
||||
activatedLabelmapPromise = setActiveLabelmap(referencedDisplaySet, studies, segDisplaySet, undefined, onDisplaySetLoadFailureHandler);
|
||||
}
|
||||
|
||||
const referencedDisplaySet = otherDisplaySets.find(ds =>
|
||||
referencedSeriesInstanceUIDs.includes(ds.SeriesInstanceUID)
|
||||
);
|
||||
|
||||
return referencedDisplaySet;
|
||||
};
|
||||
|
||||
const _findReferencedSeriesInstanceUIDsFromSOPInstanceUID = (
|
||||
displaySets,
|
||||
SOPInstanceUID
|
||||
) => {
|
||||
const imageSets = displaySets.filter(ds => ds instanceof ImageSet);
|
||||
|
||||
for (let i = 0; i < imageSets.length; i++) {
|
||||
const { images } = imageSets[i];
|
||||
for (let j = 0; j < images.length; j++) {
|
||||
if (images[j].SOPInstanceUID === SOPInstanceUID) {
|
||||
return [images[j].getData().metadata.SeriesInstanceUID];
|
||||
}
|
||||
}
|
||||
return {
|
||||
referencedDisplaySet : referencedDisplaySet,
|
||||
activatedLabelmapPromise : activatedLabelmapPromise
|
||||
}
|
||||
};
|
||||
|
||||
function _toArray(arrayOrObject) {
|
||||
return Array.isArray(arrayOrObject) ? arrayOrObject : [arrayOrObject];
|
||||
}
|
||||
@@ -1,9 +1,12 @@
|
||||
import React from 'react';
|
||||
import OHIF from '@ohif/core';
|
||||
|
||||
import init from './init.js';
|
||||
import toolbarModule from './toolbarModule.js';
|
||||
import getSopClassHandlerModule from './getOHIFDicomSegSopClassHandler.js';
|
||||
import SegmentationPanel from './components/SegmentationPanel/SegmentationPanel.js';
|
||||
import { version } from '../package.json';
|
||||
const { studyMetadataManager } = OHIF.utils;
|
||||
|
||||
export default {
|
||||
/**
|
||||
@@ -25,12 +28,13 @@ export default {
|
||||
return toolbarModule;
|
||||
},
|
||||
getPanelModule({ commandsManager, api, servicesManager }) {
|
||||
const { UINotificationService } = servicesManager.services;
|
||||
const { UINotificationService, LoggerService } = servicesManager.services;
|
||||
|
||||
const ExtendedSegmentationPanel = props => {
|
||||
const { activeContexts } = api.hooks.useAppContext();
|
||||
|
||||
const onDisplaySetLoadFailureHandler = error => {
|
||||
LoggerService.error({ error, message: error.message });
|
||||
UINotificationService.show({
|
||||
title: 'DICOM Segmentation Loader',
|
||||
message: error.message,
|
||||
@@ -78,13 +82,51 @@ export default {
|
||||
);
|
||||
};
|
||||
|
||||
const SegmentationPanelTabUpdatedEvent = 'segmentation-panel-tab-updated';
|
||||
|
||||
/**
|
||||
* Trigger's an event to update the state of the panel's RoundedButtonGroup.
|
||||
*
|
||||
* This is required to avoid extension state
|
||||
* coupling with the viewer's ToolbarRow component.
|
||||
*
|
||||
* @param {object} data
|
||||
*/
|
||||
const triggerSegmentationPanelTabUpdatedEvent = data => {
|
||||
const event = new CustomEvent(SegmentationPanelTabUpdatedEvent, {
|
||||
detail: data,
|
||||
});
|
||||
document.dispatchEvent(event);
|
||||
};
|
||||
|
||||
const onSegmentationsLoaded = ({ detail }) => {
|
||||
const { segDisplaySet, segMetadata } = detail;
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
segDisplaySet.StudyInstanceUID
|
||||
);
|
||||
const referencedDisplaysets = studyMetadata.getDerivedDatasets({
|
||||
referencedSeriesInstanceUID: segMetadata.seriesInstanceUid,
|
||||
Modality: 'SEG',
|
||||
});
|
||||
triggerSegmentationPanelTabUpdatedEvent({
|
||||
badgeNumber: referencedDisplaysets.length,
|
||||
target: 'segmentation-panel',
|
||||
});
|
||||
};
|
||||
|
||||
document.addEventListener(
|
||||
'extensiondicomsegmentationsegloaded',
|
||||
onSegmentationsLoaded
|
||||
);
|
||||
|
||||
return {
|
||||
menuOptions: [
|
||||
{
|
||||
icon: 'list',
|
||||
label: 'Segmentations',
|
||||
target: 'segmentation-panel',
|
||||
isDisabled: studies => {
|
||||
stateEvent: SegmentationPanelTabUpdatedEvent,
|
||||
isDisabled: (studies, activeViewport) => {
|
||||
if (!studies) {
|
||||
return true;
|
||||
}
|
||||
@@ -97,6 +139,23 @@ export default {
|
||||
const series = study.series[j];
|
||||
|
||||
if (series.Modality === 'SEG') {
|
||||
if (activeViewport) {
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
activeViewport.StudyInstanceUID
|
||||
);
|
||||
if (!studyMetadata) {
|
||||
return;
|
||||
}
|
||||
const referencedDS = studyMetadata.getDerivedDatasets({
|
||||
referencedSeriesInstanceUID:
|
||||
activeViewport.SeriesInstanceUID,
|
||||
Modality: 'SEG',
|
||||
});
|
||||
triggerSegmentationPanelTabUpdatedEvent({
|
||||
badgeNumber: referencedDS.length,
|
||||
target: 'segmentation-panel',
|
||||
});
|
||||
}
|
||||
return false;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -59,7 +59,16 @@ export default async function loadSegmentation(
|
||||
* without subscribing to external events.
|
||||
*/
|
||||
console.log('Segmentation loaded.');
|
||||
const event = new CustomEvent('extensiondicomsegmentationsegloaded');
|
||||
const event = new CustomEvent('extensiondicomsegmentationsegloaded', {
|
||||
detail: {
|
||||
imageIds,
|
||||
segDisplaySet,
|
||||
labelmapBuffer,
|
||||
segMetadata,
|
||||
segmentsOnFrame,
|
||||
labelmapSegments,
|
||||
},
|
||||
});
|
||||
document.dispatchEvent(event);
|
||||
|
||||
return labelmapIndex;
|
||||
|
||||
@@ -20,7 +20,7 @@ export default async function setActiveLabelmap(
|
||||
displaySet,
|
||||
callback = () => {},
|
||||
onDisplaySetLoadFailure = err => {
|
||||
throw new Error(err.message);
|
||||
console.error(err.message);
|
||||
}
|
||||
) {
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
@@ -48,16 +48,15 @@ export default async function setActiveLabelmap(
|
||||
}
|
||||
|
||||
if (!displaySet.isLoaded) {
|
||||
const loadPromise = displaySet.load(referencedDisplaySet, studies);
|
||||
|
||||
loadPromise.catch(error => {
|
||||
try {
|
||||
await displaySet.load(referencedDisplaySet, studies);
|
||||
} catch (error) {
|
||||
displaySet.isLoaded = false;
|
||||
displaySet.loadError = true;
|
||||
onDisplaySetLoadFailure(error);
|
||||
|
||||
// Return old index.
|
||||
return activeLabelmapIndex;
|
||||
});
|
||||
|
||||
await loadPromise;
|
||||
return -1;
|
||||
}
|
||||
}
|
||||
|
||||
labelmapIndex =
|
||||
@@ -67,8 +66,11 @@ export default async function setActiveLabelmap(
|
||||
|
||||
// This might have just been created, so need to use the non-cached value.
|
||||
state = cornerstoneTools.getModule('segmentation').state;
|
||||
|
||||
brushStackState = state.series[firstImageId];
|
||||
brushStackState.activeLabelmapIndex = labelmapIndex;
|
||||
if (brushStackState) {
|
||||
brushStackState.activeLabelmapIndex = labelmapIndex;
|
||||
}
|
||||
|
||||
refreshViewports();
|
||||
callback();
|
||||
|
||||
@@ -3,6 +3,121 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.2.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.15...@ohif/extension-dicom-tag-browser@0.2.16) (2021-12-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.14...@ohif/extension-dicom-tag-browser@0.2.15) (2021-12-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.13...@ohif/extension-dicom-tag-browser@0.2.14) (2021-11-30)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.12...@ohif/extension-dicom-tag-browser@0.2.13) (2021-10-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.11...@ohif/extension-dicom-tag-browser@0.2.12) (2021-09-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.10...@ohif/extension-dicom-tag-browser@0.2.11) (2021-06-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.9...@ohif/extension-dicom-tag-browser@0.2.10) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.8...@ohif/extension-dicom-tag-browser@0.2.9) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.7...@ohif/extension-dicom-tag-browser@0.2.8) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.6...@ohif/extension-dicom-tag-browser@0.2.7) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.5...@ohif/extension-dicom-tag-browser@0.2.6) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.4...@ohif/extension-dicom-tag-browser@0.2.5) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.3...@ohif/extension-dicom-tag-browser@0.2.4) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.2...@ohif/extension-dicom-tag-browser@0.2.3) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.1...@ohif/extension-dicom-tag-browser@0.2.2) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-tag-browser",
|
||||
"version": "0.2.2",
|
||||
"version": "0.2.16",
|
||||
"description": "OHIF extension for checking DICOM headers.",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -28,12 +28,12 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^2.6.0",
|
||||
"dcmjs": "0.17.2",
|
||||
"dcmjs": "0.19.1",
|
||||
"react": "^16.8.6"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"dicomweb-client": "^0.6.0",
|
||||
"dicomweb-client": "^0.8.3",
|
||||
"moment": "2.24.0",
|
||||
"react-select": "^3.0.8"
|
||||
}
|
||||
|
||||
@@ -18,7 +18,7 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
|
||||
activeDisplaySetInstanceUID,
|
||||
setActiveDisplaySetInstanceUID,
|
||||
] = useState(displaySetInstanceUID);
|
||||
const [activeInstance, setActiveInstance] = useState(0);
|
||||
const [activeInstance, setActiveInstance] = useState(1);
|
||||
const [tags, setTags] = useState([]);
|
||||
const [meta, setMeta] = useState('');
|
||||
const [instanceList, setInstanceList] = useState([]);
|
||||
@@ -51,20 +51,21 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
|
||||
description: displayDate,
|
||||
onClick: () => {
|
||||
setActiveDisplaySetInstanceUID(displaySetInstanceUID);
|
||||
setActiveInstance(0);
|
||||
setActiveInstance(1);
|
||||
},
|
||||
};
|
||||
});
|
||||
|
||||
let metadata;
|
||||
const isImageStack = activeDisplaySet instanceof ImageSet;
|
||||
const isImageStack =
|
||||
activeDisplaySet instanceof ImageSet &&
|
||||
activeDisplaySet.isModalitySupported === true;
|
||||
|
||||
let selectedInstanceValue;
|
||||
let instanceList;
|
||||
|
||||
if (isImageStack) {
|
||||
const { images } = activeDisplaySet;
|
||||
const image = images[activeInstance];
|
||||
const image = images[activeInstance - 1];
|
||||
|
||||
instanceList = images.map((image, index) => {
|
||||
const metadata = image.getData().metadata;
|
||||
@@ -91,7 +92,7 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
|
||||
setInstanceList(instanceList);
|
||||
setDisplaySetList(newDisplaySetList);
|
||||
setIsImageStack(isImageStack);
|
||||
}, [activeDisplaySetInstanceUID, activeInstance]);
|
||||
}, [activeDisplaySetInstanceUID, activeInstance, displaySets]);
|
||||
|
||||
const selectedDisplaySetValue = displaySetList.find(
|
||||
ds => ds.value === activeDisplaySetInstanceUID
|
||||
@@ -106,7 +107,7 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
|
||||
showValue
|
||||
step={1}
|
||||
min={1}
|
||||
max={instanceList.length - 1}
|
||||
max={instanceList.length}
|
||||
value={activeInstance}
|
||||
valueRenderer={value => <p>Instance Number: {value}</p>}
|
||||
onChange={({ target }) => {
|
||||
|
||||
@@ -3,6 +3,274 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.12.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.9...@ohif/extension-vtk@1.12.10) (2022-01-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.12.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.8...@ohif/extension-vtk@1.12.9) (2021-12-23)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.12.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.7...@ohif/extension-vtk@1.12.8) (2021-12-23)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.12.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.6...@ohif/extension-vtk@1.12.7) (2021-12-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.12.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.5...@ohif/extension-vtk@1.12.6) (2021-11-30)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.12.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.4...@ohif/extension-vtk@1.12.5) (2021-10-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.12.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.3...@ohif/extension-vtk@1.12.4) (2021-10-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.12.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.2...@ohif/extension-vtk@1.12.3) (2021-10-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.12.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.1...@ohif/extension-vtk@1.12.2) (2021-09-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.12.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.12.0...@ohif/extension-vtk@1.12.1) (2021-09-24)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.12.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.18...@ohif/extension-vtk@1.12.0) (2021-09-23)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.18](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.17...@ohif/extension-vtk@1.11.18) (2021-09-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.17](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.16...@ohif/extension-vtk@1.11.17) (2021-09-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.15...@ohif/extension-vtk@1.11.16) (2021-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.14...@ohif/extension-vtk@1.11.15) (2021-08-30)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* MPR metadata parsing for spacings ([#2517](https://github.com/OHIF/Viewers/issues/2517)) ([715dfc5](https://github.com/OHIF/Viewers/commit/715dfc556a3883de31d74012dcc99e431d91f57d))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.13...@ohif/extension-vtk@1.11.14) (2021-06-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.12...@ohif/extension-vtk@1.11.13) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.11...@ohif/extension-vtk@1.11.12) (2021-05-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.10...@ohif/extension-vtk@1.11.11) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.9...@ohif/extension-vtk@1.11.10) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.8...@ohif/extension-vtk@1.11.9) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.7...@ohif/extension-vtk@1.11.8) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.6...@ohif/extension-vtk@1.11.7) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.5...@ohif/extension-vtk@1.11.6) (2021-04-16)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.4...@ohif/extension-vtk@1.11.5) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.3...@ohif/extension-vtk@1.11.4) (2021-03-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.2...@ohif/extension-vtk@1.11.3) (2021-03-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.1...@ohif/extension-vtk@1.11.2) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.0...@ohif/extension-vtk@1.11.1) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.11.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.10.6...@ohif/extension-vtk@1.11.0) (2021-03-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **log:** add new log service ([14d6454](https://github.com/OHIF/Viewers/commit/14d6454eafaa2ccb50e133c2945c9558052ea27e))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.10.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.10.5...@ohif/extension-vtk@1.10.6) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.10.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.10.4...@ohif/extension-vtk@1.10.5) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.10.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.10.3...@ohif/extension-vtk@1.10.4) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
+12
-12
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-vtk",
|
||||
"version": "1.10.4",
|
||||
"version": "1.12.10",
|
||||
"description": "OHIF extension for VTK.js",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -32,11 +32,11 @@
|
||||
"@ohif/core": "^0.50.0",
|
||||
"@ohif/i18n": "^0.50.0",
|
||||
"@ohif/ui": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dcmjs": "0.17.2",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"cornerstone-core": "^2.6.1",
|
||||
"cornerstone-tools": "^6.0.6",
|
||||
"cornerstone-wado-image-loader": "^4.1.0",
|
||||
"dcmjs": "0.19.1",
|
||||
"dicom-parser": "^1.8.11",
|
||||
"i18next": "^17.0.3",
|
||||
"i18next-browser-languagedetector": "^3.0.1",
|
||||
"prop-types": "^15.7.2",
|
||||
@@ -50,14 +50,14 @@
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"lodash.throttle": "^4.1.1",
|
||||
"react-vtkjs-viewport": "^0.14.2"
|
||||
"react-vtkjs-viewport": "^0.14.4"
|
||||
},
|
||||
"devDependencies": {
|
||||
"@ohif/core": "^2.12.3",
|
||||
"@ohif/ui": "^1.8.2",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"@ohif/core": "^2.16.6",
|
||||
"@ohif/ui": "^1.10.5",
|
||||
"cornerstone-tools": "^6.0.6",
|
||||
"cornerstone-wado-image-loader": "^4.1.0",
|
||||
"dicom-parser": "^1.8.11",
|
||||
"gh-pages": "^2.0.1",
|
||||
"i18next": "^17.0.3",
|
||||
"i18next-browser-languagedetector": "^3.0.1",
|
||||
|
||||
@@ -72,7 +72,7 @@ class OHIFVTKViewport extends Component {
|
||||
};
|
||||
|
||||
static defaultProps = {
|
||||
onScroll: () => {},
|
||||
onScroll: () => { },
|
||||
};
|
||||
|
||||
static id = 'OHIFVTKViewport';
|
||||
@@ -271,7 +271,7 @@ class OHIFVTKViewport extends Component {
|
||||
|
||||
volumeMapper.setSampleDistance(sampleDistance);
|
||||
|
||||
// Be generous to surpress warnings, as the logging really hurts performance.
|
||||
// Be generous to suppress warnings, as the logging really hurts performance.
|
||||
// TODO: maybe we should auto adjust samples to 1000.
|
||||
volumeMapper.setMaximumSamplesPerRay(4000);
|
||||
|
||||
@@ -360,12 +360,15 @@ class OHIFVTKViewport extends Component {
|
||||
} catch (error) {
|
||||
const errorTitle = 'Failed to load 2D MPR';
|
||||
console.error(errorTitle, error);
|
||||
const { UINotificationService } = this.props.servicesManager.services;
|
||||
const {
|
||||
UINotificationService,
|
||||
LoggerService,
|
||||
} = this.props.servicesManager.services;
|
||||
if (this.props.viewportIndex === 0) {
|
||||
const message = error.message.includes('buffer')
|
||||
? 'Dataset is too big to display in MPR'
|
||||
: error.message;
|
||||
console.error(errorTitle, error);
|
||||
LoggerService.error({ error, message });
|
||||
UINotificationService.show({
|
||||
title: errorTitle,
|
||||
message,
|
||||
@@ -395,7 +398,7 @@ class OHIFVTKViewport extends Component {
|
||||
|
||||
if (
|
||||
displaySet.displaySetInstanceUID !==
|
||||
prevDisplaySet.displaySetInstanceUID ||
|
||||
prevDisplaySet.displaySetInstanceUID ||
|
||||
displaySet.SOPInstanceUID !== prevDisplaySet.SOPInstanceUID ||
|
||||
displaySet.frameIndex !== prevDisplaySet.frameIndex
|
||||
) {
|
||||
@@ -428,11 +431,15 @@ class OHIFVTKViewport extends Component {
|
||||
};
|
||||
|
||||
const onPixelDataInsertedErrorCallback = error => {
|
||||
const { UINotificationService } = this.props.servicesManager.services;
|
||||
const {
|
||||
UINotificationService,
|
||||
LoggerService,
|
||||
} = this.props.servicesManager.services;
|
||||
|
||||
if (!this.hasError) {
|
||||
if (this.props.viewportIndex === 0) {
|
||||
// Only show the notification from one viewport 1 in MPR2D.
|
||||
LoggerService.error({ error, message: error.message });
|
||||
UINotificationService.show({
|
||||
title: 'MPR Load Error',
|
||||
message: error.message,
|
||||
|
||||
@@ -14,7 +14,9 @@ import OHIFVTKViewport from './OHIFVTKViewport';
|
||||
|
||||
const { BlendMode } = Constants;
|
||||
|
||||
const commandsModule = ({ commandsManager, UINotificationService }) => {
|
||||
const commandsModule = ({ commandsManager, servicesManager }) => {
|
||||
const { UINotificationService, LoggerService } = servicesManager.services;
|
||||
|
||||
// TODO: Put this somewhere else
|
||||
let apis = {};
|
||||
let defaultVOI;
|
||||
@@ -175,7 +177,7 @@ const commandsModule = ({ commandsManager, UINotificationService }) => {
|
||||
segmentNumber,
|
||||
frameIndex,
|
||||
frame,
|
||||
done = () => { },
|
||||
done = () => {},
|
||||
}) => {
|
||||
let api = apis[viewports.activeViewportIndex];
|
||||
|
||||
@@ -473,10 +475,12 @@ const commandsModule = ({ commandsManager, UINotificationService }) => {
|
||||
const volumeLength = dimensions[0] * dimensions[1] * dimensions[2];
|
||||
|
||||
if (volumeLength > maxBufferLengthFloat32) {
|
||||
const message =
|
||||
'This volume is too large to fit in WebGL 1 textures and will display incorrectly. Please use a different browser to view this data';
|
||||
LoggerService.error({ message });
|
||||
UINotificationService.show({
|
||||
title: 'Browser does not support WebGL 2',
|
||||
message:
|
||||
'This volume is too large to fit in WebGL 1 textures and will display incorrectly. Please use a different browser to view this data',
|
||||
message,
|
||||
type: 'error',
|
||||
autoClose: false,
|
||||
});
|
||||
|
||||
@@ -35,8 +35,7 @@ const vtkExtension = {
|
||||
return toolbarModule;
|
||||
},
|
||||
getCommandsModule({ commandsManager, servicesManager }) {
|
||||
const { UINotificationService } = servicesManager.services;
|
||||
return commandsModule({ commandsManager, UINotificationService });
|
||||
return commandsModule({ commandsManager, servicesManager });
|
||||
},
|
||||
};
|
||||
|
||||
|
||||
@@ -31,63 +31,7 @@ const _isDisplaySetReconstructable = (viewportSpecificData = {}, activeViewportI
|
||||
|
||||
if (!displaySet) {
|
||||
return false;
|
||||
}
|
||||
|
||||
// 2D MPR is not currently available for 4D datasets.
|
||||
|
||||
// Assuming that slices at different time have the same position, here we just check if
|
||||
// there are multiple slices for the same ImagePositionPatient and disable MPR.
|
||||
|
||||
// A better heuristic would be checking 4D tags, e.g. the presence of multiple TemporalPositionIdentifier values.
|
||||
// However, some studies (e.g. https://github.com/OHIF/Viewers/issues/2113) do not have such tags.
|
||||
|
||||
for (let ii = 0; ii < displaySet.numImageFrames; ++ii) {
|
||||
const image = displaySet.images[ii];
|
||||
if (!image) continue;
|
||||
|
||||
const imageIdControl = image.getImageId()
|
||||
const instanceMetadataControl = cornerstone.metaData.get('instance', imageIdControl)
|
||||
|
||||
if (!instanceMetadataControl ||
|
||||
instanceMetadataControl === undefined ||
|
||||
!instanceMetadataControl.ImagePositionPatient ||
|
||||
instanceMetadataControl.ImagePositionPatient === undefined) {
|
||||
// if ImagePositionPatient is missing, skip the 4D datasets check.
|
||||
// do not return false, because it could be a 3D dataset.
|
||||
continue;
|
||||
}
|
||||
|
||||
let xImagePositionPatientControl = instanceMetadataControl.ImagePositionPatient[0];
|
||||
let yImagePositionPatientControl = instanceMetadataControl.ImagePositionPatient[1];
|
||||
let zImagePositionPatientControl = instanceMetadataControl.ImagePositionPatient[2];
|
||||
|
||||
for (let jj = ii + 1; jj < displaySet.numImageFrames; ++jj) {
|
||||
const image = displaySet.images[jj];
|
||||
if (!image) continue;
|
||||
|
||||
const imageId = image.getImageId()
|
||||
const instanceMetadata = cornerstone.metaData.get('instance', imageId)
|
||||
|
||||
if (!instanceMetadata ||
|
||||
instanceMetadata === undefined ||
|
||||
!instanceMetadata.ImagePositionPatient ||
|
||||
instanceMetadata.ImagePositionPatient === undefined) {
|
||||
// if ImagePositionPatient is missing, skip the 4D datasets check.
|
||||
// do not return false, because it could be a 3D dataset.
|
||||
continue;
|
||||
}
|
||||
|
||||
let xImagePositionPatient = instanceMetadata.ImagePositionPatient[0];
|
||||
let yImagePositionPatient = instanceMetadata.ImagePositionPatient[1];
|
||||
let zImagePositionPatient = instanceMetadata.ImagePositionPatient[2];
|
||||
|
||||
if (xImagePositionPatientControl === xImagePositionPatient &&
|
||||
yImagePositionPatientControl === yImagePositionPatient &&
|
||||
zImagePositionPatientControl === zImagePositionPatient) {
|
||||
return false;
|
||||
}
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
return displaySet.isReconstructable;
|
||||
};
|
||||
|
||||
@@ -3,6 +3,268 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [2.16.6](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.5...@ohif/core@2.16.6) (2022-01-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.16.5](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.4...@ohif/core@2.16.5) (2021-12-23)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* DICOMFileLoadingListener typo in method name ([#2647](https://github.com/OHIF/Viewers/issues/2647)) ([761d54f](https://github.com/OHIF/Viewers/commit/761d54fbbfb376c20ee15794ef7bb7111f64a06f))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.16.4](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.3...@ohif/core@2.16.4) (2021-12-23)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* SeriesTime and SeriesDate are only set for the first series and undefined for the remaining ones ([#2476](https://github.com/OHIF/Viewers/issues/2476)) ([6a401c9](https://github.com/OHIF/Viewers/commit/6a401c9e5204cb4f7af6aa33190ad5a8d0879de6))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.16.3](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.2...@ohif/core@2.16.3) (2021-12-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.16.2](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.1...@ohif/core@2.16.2) (2021-11-30)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.16.1](https://github.com/OHIF/Viewers/compare/@ohif/core@2.16.0...@ohif/core@2.16.1) (2021-10-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [2.16.0](https://github.com/OHIF/Viewers/compare/@ohif/core@2.15.1...@ohif/core@2.16.0) (2021-10-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Added support for WADO servers built with static hosting (e.g. S3) ([#2566](https://github.com/OHIF/Viewers/issues/2566)) ([a046c6c](https://github.com/OHIF/Viewers/commit/a046c6c9017a84e5ead71d5113b5e892333b4130))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.15.1](https://github.com/OHIF/Viewers/compare/@ohif/core@2.15.0...@ohif/core@2.15.1) (2021-09-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [2.15.0](https://github.com/OHIF/Viewers/compare/@ohif/core@2.14.1...@ohif/core@2.15.0) (2021-09-23)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Update to WADO Image Loader 4.0.3 to add dynamically imported WebAssembly codec support 🚀 ([#2537](https://github.com/OHIF/Viewers/issues/2537)) ([489d4b0](https://github.com/OHIF/Viewers/commit/489d4b0584f4657ceda1c5b9b68d5e9733827e47))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.14.1](https://github.com/OHIF/Viewers/compare/@ohif/core@2.14.0...@ohif/core@2.14.1) (2021-09-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [2.14.0](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.15...@ohif/core@2.14.0) (2021-09-09)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* OHIF-1000: Study prefetcher ([#2466](https://github.com/OHIF/Viewers/issues/2466)) ([8f26045](https://github.com/OHIF/Viewers/commit/8f2604509d24092b721f1333289d838820d68cac))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.15](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.14...@ohif/core@2.13.15) (2021-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.14](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.13...@ohif/core@2.13.14) (2021-08-30)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* MPR metadata parsing for spacings ([#2517](https://github.com/OHIF/Viewers/issues/2517)) ([715dfc5](https://github.com/OHIF/Viewers/commit/715dfc556a3883de31d74012dcc99e431d91f57d))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.13](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.12...@ohif/core@2.13.13) (2021-06-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.12](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.11...@ohif/core@2.13.12) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.11](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.10...@ohif/core@2.13.11) (2021-05-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.10](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.9...@ohif/core@2.13.10) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.9](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.8...@ohif/core@2.13.9) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.8](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.7...@ohif/core@2.13.8) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.7](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.6...@ohif/core@2.13.7) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.6](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.5...@ohif/core@2.13.6) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.5](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.4...@ohif/core@2.13.5) (2021-04-16)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.4](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.3...@ohif/core@2.13.4) (2021-04-15)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **wl:** fix metadata provider window level issues after dicomweb update (string vs number) ([8681036](https://github.com/OHIF/Viewers/commit/8681036b2133cfc325658691a256a86b5e36705f))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.3](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.2...@ohif/core@2.13.3) (2021-03-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.2](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.1...@ohif/core@2.13.2) (2021-03-25)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* IDC-2288: Update toolbar tabs after derived displayset loaded ([#2307](https://github.com/OHIF/Viewers/issues/2307)) ([6e723eb](https://github.com/OHIF/Viewers/commit/6e723ebced58852007ca553792c740976cfc4201))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.1](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.0...@ohif/core@2.13.1) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [2.13.0](https://github.com/OHIF/Viewers/compare/@ohif/core@2.12.5...@ohif/core@2.13.0) (2021-03-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **log:** add new log service ([14d6454](https://github.com/OHIF/Viewers/commit/14d6454eafaa2ccb50e133c2945c9558052ea27e))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.12.5](https://github.com/OHIF/Viewers/compare/@ohif/core@2.12.4...@ohif/core@2.12.5) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.12.4](https://github.com/OHIF/Viewers/compare/@ohif/core@2.12.3...@ohif/core@2.12.4) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.12.3](https://github.com/OHIF/Viewers/compare/@ohif/core@2.12.2...@ohif/core@2.12.3) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/core",
|
||||
"version": "2.12.3",
|
||||
"version": "2.16.6",
|
||||
"description": "Generic business logic for web-based medical imaging applications",
|
||||
"author": "OHIF Core Team",
|
||||
"license": "MIT",
|
||||
@@ -31,21 +31,22 @@
|
||||
"test:unit:ci": "jest --ci --runInBand --collectCoverage"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dicom-parser": "^1.8.3"
|
||||
"cornerstone-core": "^2.6.1",
|
||||
"cornerstone-tools": "^6.0.6",
|
||||
"cornerstone-wado-image-loader": "^4.1.0",
|
||||
"dicom-parser": "^1.8.11"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"ajv": "^6.10.0",
|
||||
"dcmjs": "0.17.2",
|
||||
"dicomweb-client": "^0.6.0",
|
||||
"dcmjs": "0.19.1",
|
||||
"dicomweb-client": "^0.8.3",
|
||||
"immer": "6.0.2",
|
||||
"isomorphic-base64": "^1.0.2",
|
||||
"lodash.clonedeep": "^4.5.0",
|
||||
"lodash.merge": "^4.6.1",
|
||||
"mousetrap": "^1.6.3",
|
||||
"retry": "^0.12.0",
|
||||
"validate.js": "^0.12.0"
|
||||
}
|
||||
}
|
||||
@@ -6,6 +6,7 @@ import parseDicomStructuredReport from './parseDicomStructuredReport';
|
||||
import parseMeasurementsData from './parseMeasurementsData';
|
||||
import getAllDisplaySets from './utils/getAllDisplaySets';
|
||||
import errorHandler from '../errorHandler';
|
||||
import getXHRRetryRequestHook from '../utils/xhrRetryRequestHook';
|
||||
|
||||
const VERSION_NAME = 'dcmjs-0.0';
|
||||
const TRANSFER_SYNTAX_UID = '1.2.840.10008.1.2.1';
|
||||
@@ -23,6 +24,7 @@ const retrieveMeasurementFromSR = async (series, studies, serverUrl) => {
|
||||
url: serverUrl,
|
||||
headers: DICOMWeb.getAuthorizationHeader(),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
};
|
||||
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
@@ -74,6 +76,7 @@ const stowSRFromMeasurements = async (measurements, serverUrl) => {
|
||||
url: serverUrl,
|
||||
headers: DICOMWeb.getAuthorizationHeader(),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
};
|
||||
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
|
||||
@@ -1,7 +1,10 @@
|
||||
import dcmjs from 'dcmjs';
|
||||
import classes from '../classes';
|
||||
|
||||
import findInstanceMetadataBySopInstanceUID from './utils/findInstanceMetadataBySopInstanceUid';
|
||||
|
||||
const { LogManager } = classes;
|
||||
|
||||
/**
|
||||
* Function to parse the part10 array buffer that comes from a DICOM Structured report into measurementData
|
||||
* measurementData format is a viewer specific format to be stored into the redux and consumed by other components
|
||||
@@ -20,9 +23,21 @@ const parseDicomStructuredReport = (part10SRArrayBuffer, displaySets) => {
|
||||
);
|
||||
|
||||
const { MeasurementReport } = dcmjs.adapters.Cornerstone;
|
||||
const storedMeasurementByToolType = MeasurementReport.generateToolState(
|
||||
dataset
|
||||
);
|
||||
|
||||
let storedMeasurementByToolType;
|
||||
try {
|
||||
storedMeasurementByToolType = MeasurementReport.generateToolState(dataset);
|
||||
} catch (error) {
|
||||
const seriesDescription = dataset.SeriesDescription || '';
|
||||
LogManager.publish(LogManager.EVENTS.OnLog, {
|
||||
title: `Failed to parse ${seriesDescription} measurement report`,
|
||||
type: 'warning',
|
||||
message: error.message || '',
|
||||
notify: true,
|
||||
});
|
||||
return;
|
||||
}
|
||||
|
||||
const measurementData = {};
|
||||
let measurementNumber = 0;
|
||||
|
||||
@@ -77,7 +92,6 @@ const parseDicomStructuredReport = (part10SRArrayBuffer, displaySets) => {
|
||||
|
||||
/**
|
||||
* Function to create imagePath with all imageData related
|
||||
*
|
||||
* @param {string} StudyInstanceUID
|
||||
* @param {string} SeriesInstanceUID
|
||||
* @param {string} SOPInstanceUID
|
||||
|
||||
@@ -63,10 +63,15 @@ export class HotkeysManager {
|
||||
|
||||
definitions.forEach(definition => this.registerHotkeys(definition));
|
||||
} catch (error) {
|
||||
const { UINotificationService } = this._servicesManager.services;
|
||||
const {
|
||||
UINotificationService,
|
||||
LoggerService,
|
||||
} = this._servicesManager.services;
|
||||
const message = 'Erro while setting hotkeys';
|
||||
LoggerService.error({ error, message });
|
||||
UINotificationService.show({
|
||||
title: 'Hotkeys Manager',
|
||||
message: 'Erro while setting hotkeys',
|
||||
message,
|
||||
type: 'error',
|
||||
});
|
||||
}
|
||||
|
||||
@@ -0,0 +1,18 @@
|
||||
import PubSub from './PubSub';
|
||||
|
||||
/** Log Events */
|
||||
export const LogEvents = Object.freeze({
|
||||
OnLog: 'onLog',
|
||||
});
|
||||
|
||||
/**
|
||||
* Log manager that implements pub/sub.
|
||||
* This manager can be used to send logs across different packages
|
||||
* using previously registered events.
|
||||
*/
|
||||
class LogManager extends PubSub {
|
||||
EVENTS = LogEvents;
|
||||
}
|
||||
|
||||
/** Singleton */
|
||||
export default new LogManager();
|
||||
@@ -4,6 +4,7 @@ import dicomParser from 'dicom-parser';
|
||||
import getPixelSpacingInformation from '../utils/metadataProvider/getPixelSpacingInformation';
|
||||
import fetchPaletteColorLookupTableData from '../utils/metadataProvider/fetchPaletteColorLookupTableData';
|
||||
import fetchOverlayData from '../utils/metadataProvider/fetchOverlayData';
|
||||
import validNumber from '../utils/metadataProvider/validNumber';
|
||||
|
||||
class MetadataProvider {
|
||||
constructor() {
|
||||
@@ -230,26 +231,26 @@ class MetadataProvider {
|
||||
let columnCosines;
|
||||
|
||||
if (PixelSpacing) {
|
||||
rowPixelSpacing = PixelSpacing[0];
|
||||
columnPixelSpacing = PixelSpacing[1];
|
||||
rowPixelSpacing = validNumber(PixelSpacing[0]);
|
||||
columnPixelSpacing = validNumber(PixelSpacing[1]);
|
||||
}
|
||||
|
||||
if (ImageOrientationPatient) {
|
||||
rowCosines = ImageOrientationPatient.slice(0, 3);
|
||||
columnCosines = ImageOrientationPatient.slice(3, 6);
|
||||
rowCosines = validNumber(ImageOrientationPatient.slice(0, 3));
|
||||
columnCosines = validNumber(ImageOrientationPatient.slice(3, 6));
|
||||
}
|
||||
|
||||
metadata = {
|
||||
frameOfReferenceUID: instance.FrameOfReferenceUID,
|
||||
rows: instance.Rows,
|
||||
columns: instance.Columns,
|
||||
imageOrientationPatient: ImageOrientationPatient,
|
||||
imageOrientationPatient: validNumber(ImageOrientationPatient),
|
||||
rowCosines,
|
||||
columnCosines,
|
||||
imagePositionPatient: instance.ImagePositionPatient,
|
||||
sliceThickness: instance.SliceThickness,
|
||||
sliceLocation: instance.SliceLocation,
|
||||
pixelSpacing: PixelSpacing,
|
||||
imagePositionPatient: validNumber(instance.ImagePositionPatient),
|
||||
sliceThickness: validNumber(instance.SliceThickness),
|
||||
sliceLocation: validNumber(instance.SliceLocation),
|
||||
pixelSpacing: validNumber(PixelSpacing),
|
||||
rowPixelSpacing,
|
||||
columnPixelSpacing,
|
||||
};
|
||||
@@ -284,7 +285,7 @@ class MetadataProvider {
|
||||
|
||||
break;
|
||||
case WADO_IMAGE_LOADER_TAGS.VOI_LUT_MODULE:
|
||||
const { WindowCenter, WindowWidth } = instance;
|
||||
let { WindowCenter, WindowWidth } = instance;
|
||||
|
||||
const windowCenter = Array.isArray(WindowCenter)
|
||||
? WindowCenter
|
||||
@@ -294,15 +295,17 @@ class MetadataProvider {
|
||||
: [WindowWidth];
|
||||
|
||||
metadata = {
|
||||
windowCenter,
|
||||
windowWidth,
|
||||
windowCenter: validNumber(windowCenter),
|
||||
windowWidth: validNumber(windowWidth),
|
||||
};
|
||||
|
||||
break;
|
||||
case WADO_IMAGE_LOADER_TAGS.MODALITY_LUT_MODULE:
|
||||
const rescaleSlope = validNumber(instance.RescaleSlope);
|
||||
const rescaleIntercept = validNumber(instance.RescaleIntercept);
|
||||
metadata = {
|
||||
rescaleIntercept: instance.RescaleIntercept,
|
||||
rescaleSlope: instance.RescaleSlope,
|
||||
rescaleIntercept,
|
||||
rescaleSlope,
|
||||
rescaleType: instance.RescaleType,
|
||||
};
|
||||
break;
|
||||
|
||||
@@ -0,0 +1,75 @@
|
||||
const _subscriptions = Symbol('subscriptions');
|
||||
const _lastSubscriptionId = Symbol('lastSubscriptionId');
|
||||
|
||||
/**
|
||||
* Class to implement publish/subscribe pattern
|
||||
*
|
||||
* @class
|
||||
* @classdesc Pub/sub mechanism
|
||||
*/
|
||||
export default class PubSub {
|
||||
constructor() {
|
||||
this[_subscriptions] = {};
|
||||
this[_lastSubscriptionId] = 0;
|
||||
}
|
||||
|
||||
/**
|
||||
* Subscribe to event
|
||||
*
|
||||
* @param {string} eventName Event name
|
||||
* @param {Function} callback Callback function
|
||||
* @returns {void}
|
||||
*/
|
||||
subscribe(eventName, callback) {
|
||||
if (eventName === undefined) {
|
||||
throw new Error('Event name is required');
|
||||
}
|
||||
|
||||
if (typeof callback !== 'function') {
|
||||
throw new Error('Callback must be a function');
|
||||
}
|
||||
|
||||
if (!this[_subscriptions].hasOwnProperty(eventName)) {
|
||||
this[_subscriptions][eventName] = {};
|
||||
}
|
||||
|
||||
const subscriptionId = `sub${this[_lastSubscriptionId]++}`;
|
||||
this[_subscriptions][eventName][subscriptionId] = callback;
|
||||
}
|
||||
|
||||
/**
|
||||
* Removes a subscription
|
||||
*
|
||||
* @param {string} eventName Event name
|
||||
* @param {Function} [callback] Callback function
|
||||
* @returns {void}
|
||||
*/
|
||||
unsubscribe(eventName, callback) {
|
||||
const callbacks = this[_subscriptions][eventName] || {};
|
||||
for (let subscriptionId in callbacks) {
|
||||
if (!callback) {
|
||||
delete callbacks[subscriptionId];
|
||||
} else if (callbacks[subscriptionId] === callback) {
|
||||
delete callbacks[subscriptionId];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Publish event to all subscriptions
|
||||
*
|
||||
* @param {String} eventName Event name
|
||||
* @param {any} [payload] Data that will be published
|
||||
* @returns {void}
|
||||
*/
|
||||
publish(eventName, ...payload) {
|
||||
if (eventName === undefined) {
|
||||
throw new Error('Event name is required');
|
||||
}
|
||||
|
||||
const callbacks = this[_subscriptions][eventName] || {};
|
||||
for (let subscriptionId in callbacks) {
|
||||
callbacks[subscriptionId](...payload);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1,16 +1,14 @@
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import cornerstoneWADOImageLoader from 'cornerstone-wado-image-loader';
|
||||
import {
|
||||
clearStudyLoadingProgress,
|
||||
setStudyLoadingProgress,
|
||||
} from '../redux/actions';
|
||||
import debounce from 'lodash.debounce';
|
||||
|
||||
import StackManager from '../utils/StackManager';
|
||||
import { StudyPrefetcher } from './StudyPrefetcher';
|
||||
|
||||
class BaseLoadingListener {
|
||||
constructor(stack, options = {}) {
|
||||
this.id = BaseLoadingListener.getNewId();
|
||||
this.stack = stack;
|
||||
this.startListening();
|
||||
this.statsItemsLimit = options.statsItemsLimit || 2;
|
||||
this.stats = {
|
||||
items: [],
|
||||
@@ -60,6 +58,9 @@ class BaseLoadingListener {
|
||||
}
|
||||
|
||||
_getProgressId() {
|
||||
/**
|
||||
* TODO: The id key should be configurable.
|
||||
*/
|
||||
const displaySetInstanceUID = this.stack.displaySetInstanceUID;
|
||||
return 'StackProgress:' + displaySetInstanceUID;
|
||||
}
|
||||
@@ -96,11 +97,18 @@ class BaseLoadingListener {
|
||||
class DICOMFileLoadingListener extends BaseLoadingListener {
|
||||
constructor(stack, options) {
|
||||
super(stack, options);
|
||||
|
||||
this.imageLoadProgressEventHandler = this._imageLoadProgressEventHandler.bind(
|
||||
this
|
||||
);
|
||||
|
||||
this._dataSetUrl = this._getDataSetUrl(stack);
|
||||
this._lastLoaded = 0;
|
||||
|
||||
// Check how many instances has already been download (cached)
|
||||
this._checkCachedData();
|
||||
|
||||
this.startListening();
|
||||
}
|
||||
|
||||
_checkCachedData() {
|
||||
@@ -127,10 +135,6 @@ class DICOMFileLoadingListener extends BaseLoadingListener {
|
||||
startListening() {
|
||||
const imageLoadProgressEventName = this._getImageLoadProgressEventName();
|
||||
|
||||
this.imageLoadProgressEventHandler = this._imageLoadProgressEventHandle.bind(
|
||||
this
|
||||
);
|
||||
|
||||
this.stopListening();
|
||||
|
||||
cornerstone.events.addEventListener(
|
||||
@@ -200,17 +204,57 @@ class DICOMFileLoadingListener extends BaseLoadingListener {
|
||||
}
|
||||
}
|
||||
|
||||
const StudyLoadingListenerEvents = {
|
||||
OnProgress: 'StudyLoadingListenerEvents.OnProgress',
|
||||
};
|
||||
|
||||
function promiseState(promise, callback) {
|
||||
// Symbols and RegExps are never content-equal
|
||||
var uniqueValue = window['Symbol'] ? Symbol('unique') : /unique/;
|
||||
|
||||
function notifyPendingOrResolved(value) {
|
||||
if (value === uniqueValue) {
|
||||
return callback('pending');
|
||||
} else {
|
||||
return callback('fulfilled');
|
||||
}
|
||||
}
|
||||
|
||||
function notifyRejected(reason) {
|
||||
return callback('rejected');
|
||||
}
|
||||
|
||||
var race = [promise, Promise.resolve(uniqueValue)];
|
||||
Promise.race(race).then(notifyPendingOrResolved, notifyRejected);
|
||||
}
|
||||
|
||||
class StackLoadingListener extends BaseLoadingListener {
|
||||
constructor(stack, options = {}) {
|
||||
options.statsItemsLimit = 20;
|
||||
|
||||
super(stack, options);
|
||||
|
||||
this.imageLoadedEventHandler = this._imageLoadedEventHandler.bind(this);
|
||||
this.imageCachePromiseRemovedEventHandler = this._imageCachePromiseRemovedEventHandler.bind(
|
||||
this
|
||||
);
|
||||
|
||||
this.imageDataMap = this._convertImageIdsArrayToMap(stack.imageIds);
|
||||
this.framesStatus = this._createArray(stack.imageIds.length, false);
|
||||
this.loadedCount = 0;
|
||||
|
||||
// Check how many instances has already been download (cached)
|
||||
this._checkCachedData();
|
||||
this._debouncedSetProgressData = debounce((...args) => {
|
||||
this._setProgressData(...args);
|
||||
|
||||
/** After checking cache, continue prefetch */
|
||||
const studyPrefetcher = StudyPrefetcher.getInstance();
|
||||
studyPrefetcher.prefetch(studyPrefetcher.getElement());
|
||||
}, 300);
|
||||
const debounced = true;
|
||||
this._checkCachedData(debounced);
|
||||
|
||||
this.startListening();
|
||||
}
|
||||
|
||||
_convertImageIdsArrayToMap(imageIds) {
|
||||
@@ -238,18 +282,37 @@ class StackLoadingListener extends BaseLoadingListener {
|
||||
return array;
|
||||
}
|
||||
|
||||
_checkCachedData() {
|
||||
// const imageIds = this.stack.imageIds;
|
||||
// TODO: No way to check status of Promise.
|
||||
/*for(let i = 0; i < imageIds.length; i++) {
|
||||
const imageId = imageIds[i];
|
||||
/**
|
||||
* Check if image id is cached in cornerstone.
|
||||
*
|
||||
* @param {string} imageId
|
||||
* @returns
|
||||
*/
|
||||
isImageCached(imageId) {
|
||||
const image = cornerstone.imageCache.imageCache[imageId];
|
||||
return image && image.sizeInBytes;
|
||||
}
|
||||
|
||||
const imagePromise = cornerstone.imageCache.getImageLoadObject(imageId).promise;
|
||||
_checkCachedData(debounced = false) {
|
||||
const imageIds = this.stack.imageIds;
|
||||
|
||||
if (imagePromise && (imagePromise.state() === 'resolved')) {
|
||||
this._updateFrameStatus(imageId, true);
|
||||
}
|
||||
}*/
|
||||
for (let i = 0; i < imageIds.length; i++) {
|
||||
const imageId = imageIds[i];
|
||||
|
||||
const imageObject = cornerstone.imageCache.getImageLoadObject(imageId);
|
||||
|
||||
if (this.isImageCached(imageId)) {
|
||||
this._updateFrameStatus(imageId, true, debounced);
|
||||
}
|
||||
|
||||
if (imageObject && imageObject.promise) {
|
||||
promiseState(imageObject.promise, state => {
|
||||
if (state === 'fulfilled') {
|
||||
this._updateFrameStatus(imageId, true, debounced);
|
||||
}
|
||||
});
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
_getImageLoadedEventName() {
|
||||
@@ -272,11 +335,6 @@ class StackLoadingListener extends BaseLoadingListener {
|
||||
const imageLoadedEventName = this._getImageLoadedEventName();
|
||||
const imageCachePromiseRemovedEventName = this._getImageCachePromiseRemoveEventName();
|
||||
|
||||
this.imageLoadedEventHandler = this._imageLoadedEventHandler.bind(this);
|
||||
this.imageCachePromiseRemovedEventHandler = this._imageCachePromiseRemovedEventHandler.bind(
|
||||
this
|
||||
);
|
||||
|
||||
this.stopListening();
|
||||
|
||||
cornerstone.events.addEventListener(
|
||||
@@ -303,7 +361,7 @@ class StackLoadingListener extends BaseLoadingListener {
|
||||
);
|
||||
}
|
||||
|
||||
_updateFrameStatus(imageId, loaded) {
|
||||
_updateFrameStatus(imageId, loaded, debounced) {
|
||||
const imageData = this.imageDataMap.get(imageId);
|
||||
|
||||
if (!imageData || imageData.loaded === loaded) {
|
||||
@@ -318,7 +376,7 @@ class StackLoadingListener extends BaseLoadingListener {
|
||||
imageData.loaded = loaded;
|
||||
this.framesStatus[imageData.index] = loaded;
|
||||
this.loadedCount += loaded ? 1 : -1;
|
||||
this._updateProgress();
|
||||
this._updateProgress(debounced);
|
||||
}
|
||||
|
||||
_setProgressData(progressId, progressData) {
|
||||
@@ -339,7 +397,7 @@ class StackLoadingListener extends BaseLoadingListener {
|
||||
);
|
||||
}
|
||||
|
||||
_updateProgress() {
|
||||
_updateProgress(debounced) {
|
||||
const totalFramesCount = this.stack.imageIds.length;
|
||||
const loadedFramesCount = this.loadedCount;
|
||||
const loadingFramesCount = totalFramesCount - loadedFramesCount;
|
||||
@@ -357,6 +415,11 @@ class StackLoadingListener extends BaseLoadingListener {
|
||||
framesStatus: this.framesStatus,
|
||||
};
|
||||
|
||||
if (debounced) {
|
||||
this._debouncedSetProgressData(progressId, progressData);
|
||||
return;
|
||||
}
|
||||
|
||||
this._setProgressData(progressId, progressData);
|
||||
}
|
||||
|
||||
@@ -371,11 +434,13 @@ class StackLoadingListener extends BaseLoadingListener {
|
||||
}
|
||||
|
||||
progressBar += ']';
|
||||
log.info(`${displaySetInstanceUID}: ${progressBar}`);
|
||||
console.info(`${displaySetInstanceUID}: ${progressBar}`);
|
||||
}
|
||||
}
|
||||
|
||||
class StudyLoadingListener {
|
||||
static events = StudyLoadingListenerEvents;
|
||||
|
||||
constructor(options) {
|
||||
this.listeners = {};
|
||||
this.options = options;
|
||||
@@ -454,14 +519,36 @@ class StudyLoadingListener {
|
||||
|
||||
_getSchema(stack) {
|
||||
const imageId = stack.imageIds[0];
|
||||
if (!imageId) {
|
||||
return;
|
||||
}
|
||||
const colonIndex = imageId.indexOf(':');
|
||||
return imageId.substring(0, colonIndex);
|
||||
}
|
||||
|
||||
// Singleton
|
||||
static getInstance(options) {
|
||||
/**
|
||||
* TODO: Use a different alternative without the use of events.
|
||||
*/
|
||||
const DEFAULT_OPTIONS = {
|
||||
_setProgressData: (progressId, progressData) => {
|
||||
const event = new CustomEvent(StudyLoadingListenerEvents.OnProgress, {
|
||||
detail: { progressId, progressData },
|
||||
});
|
||||
document.dispatchEvent(event);
|
||||
},
|
||||
_clearProgressById: progressId => {
|
||||
const event = new CustomEvent(StudyLoadingListenerEvents.OnProgress, {
|
||||
detail: { progressId, percentComplete: 0 },
|
||||
});
|
||||
document.dispatchEvent(event);
|
||||
},
|
||||
};
|
||||
|
||||
if (!StudyLoadingListener._instance) {
|
||||
StudyLoadingListener._instance = new StudyLoadingListener(options);
|
||||
StudyLoadingListener._instance = new StudyLoadingListener(
|
||||
options || DEFAULT_OPTIONS
|
||||
);
|
||||
}
|
||||
|
||||
return StudyLoadingListener._instance;
|
||||
|
||||
@@ -1,14 +1,27 @@
|
||||
import log from '../log.js';
|
||||
import OHIFError from './OHIFError';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import cornerstoneTools from 'cornerstone-tools';
|
||||
import getImageId from '../utils/getImageId.js';
|
||||
|
||||
const noop = () => {};
|
||||
|
||||
export class StudyPrefetcher {
|
||||
constructor(studies) {
|
||||
options = {
|
||||
order: 'closest',
|
||||
displaySetCount: 1,
|
||||
onImageCached: noop,
|
||||
requestType: 'prefetch',
|
||||
preventCache: false,
|
||||
prefetchDisplaySetsTimeout: 300,
|
||||
maxNumPrefetchRequests: 100,
|
||||
includeActiveDisplaySet: false,
|
||||
};
|
||||
|
||||
constructor(studies, options) {
|
||||
this.studies = studies || [];
|
||||
this.prefetchDisplaySetsTimeout = 300;
|
||||
this.lastActiveViewportElement = null;
|
||||
|
||||
if (options) {
|
||||
this.options = { ...this.options, ...options };
|
||||
this.options.requestType = 'prefetch';
|
||||
}
|
||||
|
||||
cornerstone.events.addEventListener(
|
||||
'cornerstoneimagecachefull.StudyPrefetcher',
|
||||
@@ -16,6 +29,9 @@ export class StudyPrefetcher {
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Remove previously set event listeners and stop prefetching.
|
||||
*/
|
||||
destroy() {
|
||||
this.stopPrefetching();
|
||||
cornerstone.events.removeEventListener(
|
||||
@@ -24,95 +40,180 @@ export class StudyPrefetcher {
|
||||
);
|
||||
}
|
||||
|
||||
static getInstance() {
|
||||
/**
|
||||
* Get StudyPrefetcher singleton instance.
|
||||
*
|
||||
* @param {array} studies
|
||||
* @param {object} options
|
||||
* @returns
|
||||
*/
|
||||
static getInstance(studies = [], options) {
|
||||
if (!StudyPrefetcher.instance) {
|
||||
StudyPrefetcher.instance = new StudyPrefetcher([]);
|
||||
StudyPrefetcher.instance = new StudyPrefetcher(studies, options);
|
||||
}
|
||||
|
||||
if (options) {
|
||||
this.options = { ...this.options, ...options };
|
||||
this.options.requestType = 'prefetch';
|
||||
}
|
||||
|
||||
return StudyPrefetcher.instance;
|
||||
}
|
||||
|
||||
/**
|
||||
* OHIF study metadata instances.
|
||||
*
|
||||
* @param {array} studies
|
||||
*/
|
||||
setStudies(studies) {
|
||||
this.stopPrefetching();
|
||||
this.studies = studies;
|
||||
}
|
||||
|
||||
prefetch() {
|
||||
/**
|
||||
* Get previously prefetched element.
|
||||
*
|
||||
* @returns {HTMLElement} Previously prefetched element.
|
||||
*/
|
||||
getElement() {
|
||||
return this.element;
|
||||
}
|
||||
|
||||
/**
|
||||
* Prefetch related display sets based on cornerstone viewport element
|
||||
* with previously set options.
|
||||
*
|
||||
* @param {*} element
|
||||
* @param {string} displaySetInstanceUID the display set instance uid
|
||||
* @returns
|
||||
*/
|
||||
prefetch(element, displaySetInstanceUID) {
|
||||
if (!this.studies || !this.studies.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
this.element = element;
|
||||
try {
|
||||
this.enabledElement = cornerstone.getEnabledElement(element);
|
||||
} catch {
|
||||
throw new Error('Failed to find the enabled element');
|
||||
}
|
||||
|
||||
this.stopPrefetching();
|
||||
this.prefetchDisplaySets();
|
||||
this.prefetchDisplaySets(displaySetInstanceUID);
|
||||
}
|
||||
|
||||
/**
|
||||
* Stop prefetching images.
|
||||
*/
|
||||
stopPrefetching() {
|
||||
cornerstoneTools.requestPoolManager.clearRequestStack('prefetch');
|
||||
cornerstone.imageLoadPoolManager.clearRequestStack('prefetch');
|
||||
}
|
||||
|
||||
prefetchDisplaySetsAsync(timeout) {
|
||||
timeout = timeout || this.prefetchDisplaySetsTimeout;
|
||||
|
||||
/**
|
||||
* Prefetch display sets async.
|
||||
*
|
||||
* @param {HTMLElement} element cornerstone viewport element
|
||||
* @param {number} timeout
|
||||
*/
|
||||
prefetchDisplaySetsAsync(element, timeout) {
|
||||
try {
|
||||
this.enabledElement = cornerstone.getEnabledElement(element);
|
||||
} catch {
|
||||
throw new Error('Failed to find the enabled element');
|
||||
}
|
||||
timeout = timeout || this.options.prefetchDisplaySetsTimeout;
|
||||
clearTimeout(this.prefetchDisplaySetsHandler);
|
||||
this.prefetchDisplaySetsHandler = setTimeout(() => {
|
||||
this.prefetchDisplaySets();
|
||||
this.prefetchDisplaySets(element);
|
||||
}, timeout);
|
||||
}
|
||||
|
||||
prefetchDisplaySets() {
|
||||
// TODO: Allow passing in config
|
||||
let config = {
|
||||
order: 'closest',
|
||||
displaySetCount: 1,
|
||||
};
|
||||
|
||||
const displaySetsToPrefetch = this.getDisplaySetsToPrefetch(config);
|
||||
/**
|
||||
* Extract all image ids from all display sets to be fetched and
|
||||
* call method to add images to request pool manager.
|
||||
*
|
||||
* @param {string} displaySetInstanceUID the display set instance uid
|
||||
*/
|
||||
prefetchDisplaySets(displaySetInstanceUID) {
|
||||
const displaySetsToPrefetch = this.getDisplaySetsToPrefetch(
|
||||
displaySetInstanceUID
|
||||
);
|
||||
const imageIds = this.getImageIdsFromDisplaySets(displaySetsToPrefetch);
|
||||
|
||||
this.prefetchImageIds(imageIds);
|
||||
}
|
||||
|
||||
/**
|
||||
* Add image ids to request pool manager.
|
||||
*
|
||||
* @param {array} imageIds
|
||||
*/
|
||||
prefetchImageIds(imageIds) {
|
||||
const nonCachedImageIds = this.filterCachedImageIds(imageIds);
|
||||
const requestPoolManager = cornerstoneTools.requestPoolManager;
|
||||
const requestType = 'prefetch';
|
||||
const preventCache = false;
|
||||
const noop = () => {};
|
||||
const imageLoadPoolManager = cornerstone.imageLoadPoolManager;
|
||||
|
||||
imageLoadPoolManager.maxNumRequests = {
|
||||
...imageLoadPoolManager.maxNumRequests,
|
||||
prefetch: this.options.maxNumPrefetchRequests,
|
||||
};
|
||||
|
||||
let requestFn;
|
||||
if (this.options.preventCache) {
|
||||
requestFn = id => cornerstone.loadImage(id);
|
||||
} else {
|
||||
requestFn = id => cornerstone.loadAndCacheImage(id);
|
||||
}
|
||||
|
||||
nonCachedImageIds.forEach(imageId => {
|
||||
requestPoolManager.addRequest(
|
||||
{},
|
||||
imageId,
|
||||
requestType,
|
||||
preventCache,
|
||||
noop,
|
||||
noop
|
||||
imageLoadPoolManager.addRequest(
|
||||
requestFn.bind(this, imageId),
|
||||
this.options.requestType,
|
||||
{
|
||||
imageId,
|
||||
}
|
||||
);
|
||||
});
|
||||
|
||||
requestPoolManager.startGrabbing();
|
||||
}
|
||||
|
||||
/**
|
||||
* Get study by cornerstone image instance.
|
||||
*
|
||||
* @param {object} image
|
||||
* @returns
|
||||
*/
|
||||
getStudy(image) {
|
||||
const StudyInstanceUID = cornerstone.metaData.get(
|
||||
'StudyInstanceUID',
|
||||
image.imageId
|
||||
);
|
||||
return OHIF.viewer.Studies.find(
|
||||
study => study.StudyInstanceUID === StudyInstanceUID
|
||||
const studies = this.studies;
|
||||
return studies.find(
|
||||
study => study.getData().StudyInstanceUID === StudyInstanceUID
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Get study series by cornerstone image instance.
|
||||
*
|
||||
* @param {object} study OHIF study instance
|
||||
* @param {object} image cornerstone image instance object
|
||||
* @returns
|
||||
*/
|
||||
getSeries(study, image) {
|
||||
const SeriesInstanceUID = cornerstone.metaData.get(
|
||||
'SeriesInstanceUID',
|
||||
image.imageId
|
||||
);
|
||||
const studyMetadata = OHIF.viewerbase.getStudyMetadata(study);
|
||||
|
||||
return studyMetadata.getSeriesByUID(SeriesInstanceUID);
|
||||
return study.getSeriesByUID(SeriesInstanceUID);
|
||||
}
|
||||
|
||||
/**
|
||||
* Get sop instance by cornerstone image instance.
|
||||
*
|
||||
* @param {array} series
|
||||
* @param {object} image
|
||||
* @returns
|
||||
*/
|
||||
getInstance(series, image) {
|
||||
const instanceMetadata = cornerstone.metaData.get(
|
||||
'instance',
|
||||
@@ -121,7 +222,33 @@ export class StudyPrefetcher {
|
||||
return series.getInstanceByUID(instanceMetadata.SOPInstanceUID);
|
||||
}
|
||||
|
||||
getActiveDisplaySet(displaySets, instance) {
|
||||
/**
|
||||
* Returns the display set with given uid.
|
||||
*
|
||||
* @param {string} displaySetInstanceUID the display set instance uid
|
||||
* @returns {object} displaySet
|
||||
*/
|
||||
getDisplaySetByUID(displaySetInstanceUID) {
|
||||
let displaySet;
|
||||
this.studies.forEach(study => {
|
||||
const ds = study.displaySets.find(
|
||||
ds => ds.displaySetInstanceUID === displaySetInstanceUID
|
||||
);
|
||||
if (ds) {
|
||||
displaySet = ds;
|
||||
}
|
||||
});
|
||||
return displaySet;
|
||||
}
|
||||
|
||||
/**
|
||||
* Get display set by SOPInstanceUID.
|
||||
*
|
||||
* @param {array} displaySets
|
||||
* @param {object} instance
|
||||
* @returns
|
||||
*/
|
||||
getDisplaySetBySOPInstanceUID(displaySets, instance) {
|
||||
return displaySets.find(displaySet => {
|
||||
return displaySet.images.some(displaySetImage => {
|
||||
return displaySetImage.SOPInstanceUID === instance.SOPInstanceUID;
|
||||
@@ -129,25 +256,48 @@ export class StudyPrefetcher {
|
||||
});
|
||||
}
|
||||
|
||||
getDisplaySetsToPrefetch(config) {
|
||||
/**
|
||||
* Get active viewport image based on cornerstone viewport element.
|
||||
* @returns
|
||||
*/
|
||||
getActiveViewportImage() {
|
||||
if (!this.enabledElement) {
|
||||
return;
|
||||
}
|
||||
|
||||
return this.enabledElement.image;
|
||||
}
|
||||
|
||||
/**
|
||||
* Prefetch display sets based on cornerstone viewport element image.
|
||||
*
|
||||
* @param {string} displaySetInstanceUID the display set instance uid
|
||||
* @returns {array} displaySets
|
||||
*/
|
||||
getDisplaySetsToPrefetch(displaySetInstanceUID) {
|
||||
const image = this.getActiveViewportImage();
|
||||
|
||||
if (!image || !config || !config.displaySetCount) {
|
||||
if (!image) {
|
||||
return [];
|
||||
}
|
||||
|
||||
/*const study = this.getStudy(image);
|
||||
const study = this.getStudy(image);
|
||||
const series = this.getSeries(study, image);
|
||||
const instance = this.getInstance(series, image);*/
|
||||
const instance = this.getInstance(series, image);
|
||||
const displaySets = study.displaySets;
|
||||
const activeDisplaySet = null; //this.getActiveDisplaySet(displaySets, instance);
|
||||
const activeDisplaySet = displaySetInstanceUID
|
||||
? this.getDisplaySetByUID(displaySetInstanceUID)
|
||||
: this.getDisplaySetBySOPInstanceUID(displaySets, instance);
|
||||
|
||||
const prefetchMethodMap = {
|
||||
topdown: 'getFirstDisplaySets',
|
||||
downward: 'getNextDisplaySets',
|
||||
upward: 'getPreviousDisplaySets',
|
||||
closest: 'getClosestDisplaySets',
|
||||
all: 'getAllDisplaySets',
|
||||
};
|
||||
|
||||
const prefetchOrder = config.order;
|
||||
const prefetchOrder = this.options.order;
|
||||
const methodName = prefetchMethodMap[prefetchOrder];
|
||||
const getDisplaySets = this[methodName];
|
||||
|
||||
@@ -163,18 +313,59 @@ export class StudyPrefetcher {
|
||||
this,
|
||||
displaySets,
|
||||
activeDisplaySet,
|
||||
config.displaySetCount
|
||||
this.options.displaySetCount,
|
||||
this.options.includeActiveDisplaySet
|
||||
);
|
||||
}
|
||||
|
||||
getFirstDisplaySets(displaySets, activeDisplaySet, displaySetCount) {
|
||||
/**
|
||||
* Get all display sets.
|
||||
*
|
||||
* @param {array} displaySets
|
||||
* @param {object} activeDisplaySet
|
||||
* @param {number} displaySetCount
|
||||
* @param {boolean} includeActiveDisplaySet
|
||||
* @returns
|
||||
*/
|
||||
getAllDisplaySets(
|
||||
displaySets,
|
||||
activeDisplaySet,
|
||||
displaySetCount,
|
||||
includeActiveDisplaySet
|
||||
) {
|
||||
const length = displaySets.length;
|
||||
const selectedDisplaySets = [];
|
||||
|
||||
for (let i = 0; i < length; i++) {
|
||||
const displaySet = displaySets[i];
|
||||
selectedDisplaySets.push(displaySet);
|
||||
}
|
||||
|
||||
return selectedDisplaySets;
|
||||
}
|
||||
|
||||
/**
|
||||
* Get all display sets in order after the active display set.
|
||||
*
|
||||
* @param {array} displaySets
|
||||
* @param {object} activeDisplaySet
|
||||
* @param {number} displaySetCount
|
||||
* @param {boolean} includeActiveDisplaySet
|
||||
* @returns
|
||||
*/
|
||||
getFirstDisplaySets(
|
||||
displaySets,
|
||||
activeDisplaySet,
|
||||
displaySetCount,
|
||||
includeActiveDisplaySet
|
||||
) {
|
||||
const length = displaySets.length;
|
||||
const selectedDisplaySets = [];
|
||||
|
||||
for (let i = 0; i < length && displaySetCount; i++) {
|
||||
const displaySet = displaySets[i];
|
||||
|
||||
if (displaySet !== activeDisplaySet) {
|
||||
if (includeActiveDisplaySet || displaySet !== activeDisplaySet) {
|
||||
selectedDisplaySets.push(displaySet);
|
||||
displaySetCount--;
|
||||
}
|
||||
@@ -183,21 +374,78 @@ export class StudyPrefetcher {
|
||||
return selectedDisplaySets;
|
||||
}
|
||||
|
||||
getNextDisplaySets(displaySets, activeDisplaySet, displaySetCount) {
|
||||
/**
|
||||
* Get all display sets before the active display set.
|
||||
*
|
||||
* @param {array} displaySets
|
||||
* @param {object} activeDisplaySet
|
||||
* @param {number} displaySetCount
|
||||
* @param {boolean} includeActiveDisplaySet
|
||||
* @returns
|
||||
*/
|
||||
getPreviousDisplaySets(
|
||||
displaySets,
|
||||
activeDisplaySet,
|
||||
displaySetCount,
|
||||
includeActiveDisplaySet
|
||||
) {
|
||||
const activeDisplaySetIndex = displaySets.indexOf(activeDisplaySet);
|
||||
const begin = activeDisplaySetIndex + 1;
|
||||
const end = Math.min(begin + displaySetCount, displaySets.length);
|
||||
const end = includeActiveDisplaySet
|
||||
? activeDisplaySetIndex + 1
|
||||
: activeDisplaySetIndex;
|
||||
const previousDisplaySets = displaySets.slice(0, end);
|
||||
return previousDisplaySets.reverse().slice(0, displaySetCount);
|
||||
}
|
||||
|
||||
/**
|
||||
* Get all display sets after the active display set.
|
||||
*
|
||||
* @param {array} displaySets
|
||||
* @param {object} activeDisplaySet
|
||||
* @param {number} displaySetCount
|
||||
* @param {boolean} includeActiveDisplaySet
|
||||
* @returns
|
||||
*/
|
||||
getNextDisplaySets(
|
||||
displaySets,
|
||||
activeDisplaySet,
|
||||
displaySetCount,
|
||||
includeActiveDisplaySet
|
||||
) {
|
||||
const activeDisplaySetIndex = displaySets.indexOf(activeDisplaySet);
|
||||
const begin = includeActiveDisplaySet
|
||||
? activeDisplaySetIndex
|
||||
: activeDisplaySetIndex + 1;
|
||||
const end = Math.min(begin + displaySetCount, displaySets.length);
|
||||
return displaySets.slice(begin, end);
|
||||
}
|
||||
|
||||
getClosestDisplaySets(displaySets, activeDisplaySet, displaySetCount) {
|
||||
/**
|
||||
* Get all display set closest to the active display set.
|
||||
*
|
||||
* @param {array} displaySets
|
||||
* @param {object} activeDisplaySet
|
||||
* @param {number} displaySetCount
|
||||
* @param {boolean} includeActiveDisplaySet
|
||||
* @returns
|
||||
*/
|
||||
getClosestDisplaySets(
|
||||
displaySets,
|
||||
activeDisplaySet,
|
||||
displaySetCount,
|
||||
includeActiveDisplaySet
|
||||
) {
|
||||
const activeDisplaySetIndex = displaySets.indexOf(activeDisplaySet);
|
||||
const length = displaySets.length;
|
||||
const selectedDisplaySets = [];
|
||||
let left = activeDisplaySetIndex - 1;
|
||||
let right = activeDisplaySetIndex + 1;
|
||||
|
||||
if (includeActiveDisplaySet) {
|
||||
selectedDisplaySets.push(displaySets[activeDisplaySetIndex]);
|
||||
displaySetCount--;
|
||||
}
|
||||
|
||||
while ((left >= 0 || right < length) && displaySetCount) {
|
||||
if (left >= 0) {
|
||||
selectedDisplaySets.push(displaySets[left]);
|
||||
@@ -215,6 +463,12 @@ export class StudyPrefetcher {
|
||||
return selectedDisplaySets;
|
||||
}
|
||||
|
||||
/**
|
||||
* Get all image ids from display sets.
|
||||
*
|
||||
* @param {array} displaySets
|
||||
* @returns {array} image ids
|
||||
*/
|
||||
getImageIdsFromDisplaySets(displaySets) {
|
||||
let imageIds = [];
|
||||
|
||||
@@ -225,9 +479,19 @@ export class StudyPrefetcher {
|
||||
return imageIds;
|
||||
}
|
||||
|
||||
/**
|
||||
* Get all image ids from a given display set.
|
||||
*
|
||||
* @param {array} displaySet
|
||||
* @returns
|
||||
*/
|
||||
getImageIdsFromDisplaySet(displaySet) {
|
||||
const imageIds = [];
|
||||
|
||||
if (!displaySet.images || displaySet.images.length < 1) {
|
||||
return [];
|
||||
}
|
||||
|
||||
// TODO: This duplicates work done by the stack manager
|
||||
displaySet.images.forEach(image => {
|
||||
const numFrames = image.numFrames;
|
||||
@@ -245,15 +509,30 @@ export class StudyPrefetcher {
|
||||
return imageIds;
|
||||
}
|
||||
|
||||
/**
|
||||
* Filter cached image ids from a set of image ids.
|
||||
*
|
||||
* @param {array} imageIds
|
||||
* @returns {array} images not cached
|
||||
*/
|
||||
filterCachedImageIds(imageIds) {
|
||||
return imageIds.filter(imageId => !this.isImageCached(imageId));
|
||||
}
|
||||
|
||||
/**
|
||||
* Check if image id is cached in cornerstone.
|
||||
*
|
||||
* @param {string} imageId
|
||||
* @returns
|
||||
*/
|
||||
isImageCached(imageId) {
|
||||
const image = cornerstone.imageCache.imageCache[imageId];
|
||||
return image && image.sizeInBytes;
|
||||
}
|
||||
|
||||
/**
|
||||
* Warns that cache is full and stops prefetching.
|
||||
*/
|
||||
cacheFullHandler = () => {
|
||||
log.warn('Cache full');
|
||||
this.stopPrefetching();
|
||||
|
||||
@@ -4,6 +4,8 @@ import CommandsManager from './CommandsManager.js';
|
||||
import { DICOMFileLoadingListener } from './StudyLoadingListener';
|
||||
import HotkeysManager from './HotkeysManager.js';
|
||||
import ImageSet from './ImageSet';
|
||||
import LogManager from './LogManager';
|
||||
import PubSub from './PubSub';
|
||||
import MetadataProvider from './MetadataProvider';
|
||||
import OHIFError from './OHIFError.js';
|
||||
import { OHIFStudyMetadataSource } from './OHIFStudyMetadataSource';
|
||||
@@ -36,7 +38,9 @@ const classes = {
|
||||
MetadataProvider,
|
||||
CommandsManager,
|
||||
HotkeysManager,
|
||||
LogManager,
|
||||
ImageSet,
|
||||
PubSub,
|
||||
StudyPrefetcher,
|
||||
StudyLoadingListener,
|
||||
StackLoadingListener,
|
||||
|
||||
@@ -9,11 +9,15 @@ import { SeriesMetadata } from './SeriesMetadata';
|
||||
import { api } from 'dicomweb-client';
|
||||
// - createStacks
|
||||
import { isImage } from '../../utils/isImage';
|
||||
import isDisplaySetReconstructable from '../../utils/isDisplaySetReconstructable';
|
||||
import {
|
||||
isDisplaySetReconstructable,
|
||||
isSpacingUniform,
|
||||
} from '../../utils/isDisplaySetReconstructable';
|
||||
import errorHandler from '../../errorHandler';
|
||||
import isLowPriorityModality from '../../utils/isLowPriorityModality';
|
||||
import getXHRRetryRequestHook from '../../utils/xhrRetryRequestHook';
|
||||
|
||||
export class StudyMetadata extends Metadata {
|
||||
class StudyMetadata extends Metadata {
|
||||
constructor(data, uid) {
|
||||
super(data, uid);
|
||||
// Initialize Private Properties
|
||||
@@ -158,41 +162,64 @@ export class StudyMetadata extends Metadata {
|
||||
// series into another display set.
|
||||
const stackableInstances = [];
|
||||
series.forEachInstance(instance => {
|
||||
let displaySet;
|
||||
|
||||
// All imaging modalities must have a valid value for SOPClassUID (x00080016) or Rows (x00280010)
|
||||
if (
|
||||
!isImage(instance.getTagValue('SOPClassUID')) &&
|
||||
!instance.getTagValue('Rows')
|
||||
) {
|
||||
return;
|
||||
}
|
||||
|
||||
let displaySet;
|
||||
|
||||
if (isMultiFrame(instance)) {
|
||||
displaySet = makeDisplaySet(series, [instance]);
|
||||
|
||||
// we set an empty display and we add a isModalitySupported variable to
|
||||
// print a warning that the modality is not supported in the thumbnail.
|
||||
const displaySet = new ImageSet([]);
|
||||
const seriesData = series.getData();
|
||||
displaySet.setAttributes({
|
||||
sopClassUIDs,
|
||||
isClip: true,
|
||||
displaySetInstanceUID: displaySet.uid,
|
||||
SeriesDate: seriesData.SeriesDate,
|
||||
SeriesTime: seriesData.SeriesTime,
|
||||
SeriesInstanceUID: series.getSeriesInstanceUID(),
|
||||
StudyInstanceUID: study.getStudyInstanceUID(), // Include the study instance UID for drag/drop purposes
|
||||
numImageFrames: instance.getTagValue('NumberOfFrames'), // Override the default value of instances.length
|
||||
InstanceNumber: instance.getTagValue('InstanceNumber'), // Include the instance number
|
||||
AcquisitionDatetime: instance.getTagValue('AcquisitionDateTime'), // Include the acquisition datetime
|
||||
});
|
||||
displaySets.push(displaySet);
|
||||
} else if (isSingleImageModality(instance.Modality)) {
|
||||
displaySet = makeDisplaySet(series, [instance]);
|
||||
displaySet.setAttributes({
|
||||
sopClassUIDs,
|
||||
SeriesNumber: instance.getTagValue('SeriesNumber'),
|
||||
SeriesDescription: instance.getTagValue('SeriesDescription'),
|
||||
numImageFrames: instance.getTagValue('NumberOfFrames'),
|
||||
frameRate: instance.getTagValue('FrameTime'),
|
||||
Modality: instance.getTagValue('Modality'),
|
||||
isMultiFrame: false,
|
||||
StudyInstanceUID: study.getStudyInstanceUID(), // Include the study instance UID
|
||||
SeriesInstanceUID: series.getSeriesInstanceUID(),
|
||||
InstanceNumber: instance.getTagValue('InstanceNumber'), // Include the instance number
|
||||
AcquisitionDatetime: instance.getTagValue('AcquisitionDateTime'), // Include the acquisition datetime
|
||||
isReconstructable: false,
|
||||
isModalitySupported: false,
|
||||
metadata: instance.getData().metadata,
|
||||
});
|
||||
|
||||
displaySets.push(displaySet);
|
||||
} else {
|
||||
stackableInstances.push(instance);
|
||||
if (isMultiFrame(instance)) {
|
||||
displaySet = makeDisplaySet(series, [instance]);
|
||||
|
||||
displaySet.setAttributes({
|
||||
sopClassUIDs,
|
||||
isClip: true,
|
||||
SeriesInstanceUID: series.getSeriesInstanceUID(),
|
||||
StudyInstanceUID: study.getStudyInstanceUID(), // Include the study instance UID for drag/drop purposes
|
||||
numImageFrames: instance.getTagValue('NumberOfFrames'), // Override the default value of instances.length
|
||||
InstanceNumber: instance.getTagValue('InstanceNumber'), // Include the instance number
|
||||
AcquisitionDatetime: instance.getTagValue('AcquisitionDateTime'), // Include the acquisition datetime
|
||||
});
|
||||
displaySets.push(displaySet);
|
||||
} else if (isSingleImageModality(instance.Modality)) {
|
||||
displaySet = makeDisplaySet(series, [instance]);
|
||||
displaySet.setAttributes({
|
||||
sopClassUIDs,
|
||||
StudyInstanceUID: study.getStudyInstanceUID(), // Include the study instance UID
|
||||
SeriesInstanceUID: series.getSeriesInstanceUID(),
|
||||
InstanceNumber: instance.getTagValue('InstanceNumber'), // Include the instance number
|
||||
AcquisitionDatetime: instance.getTagValue('AcquisitionDateTime'), // Include the acquisition datetime
|
||||
});
|
||||
displaySets.push(displaySet);
|
||||
} else {
|
||||
stackableInstances.push(instance);
|
||||
}
|
||||
}
|
||||
});
|
||||
|
||||
@@ -226,6 +253,60 @@ export class StudyMetadata extends Metadata {
|
||||
displaySets.map(displaySet => this._derivedDisplaySets.push(displaySet));
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the source display set of the derivated display set.
|
||||
* @param {object} derivatedDisplaySet
|
||||
* @param {array[StudyMetadata]} studies
|
||||
* @return {object} source display set.
|
||||
*/
|
||||
static getReferencedDisplaySet(derivatedDisplaySet, studies) {
|
||||
let allDisplaySets = [];
|
||||
|
||||
studies.forEach(study => {
|
||||
allDisplaySets = allDisplaySets.concat(study.displaySets);
|
||||
});
|
||||
|
||||
const otherDisplaySets = allDisplaySets.filter(
|
||||
ds =>
|
||||
ds.displaySetInstanceUID !== derivatedDisplaySet.displaySetInstanceUID
|
||||
);
|
||||
|
||||
const { metadata } = derivatedDisplaySet;
|
||||
|
||||
let referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromSourceImageSequence(
|
||||
metadata,
|
||||
otherDisplaySets
|
||||
);
|
||||
|
||||
let noReferencedSeriesAvailable =
|
||||
!referencedSeriesInstanceUIDs ||
|
||||
referencedSeriesInstanceUIDs.length === 0;
|
||||
if (noReferencedSeriesAvailable) {
|
||||
referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromReferencedSeriesSequence(
|
||||
metadata
|
||||
);
|
||||
}
|
||||
|
||||
noReferencedSeriesAvailable =
|
||||
!referencedSeriesInstanceUIDs ||
|
||||
referencedSeriesInstanceUIDs.length === 0;
|
||||
if (noReferencedSeriesAvailable) {
|
||||
referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromReferencedImageSequence(
|
||||
metadata,
|
||||
otherDisplaySets
|
||||
);
|
||||
}
|
||||
|
||||
const referencedSeriesAvailable =
|
||||
referencedSeriesInstanceUIDs && referencedSeriesInstanceUIDs.length !== 0;
|
||||
if (referencedSeriesAvailable) {
|
||||
const referencedDisplaySet = otherDisplaySets.find(ds =>
|
||||
referencedSeriesInstanceUIDs.includes(ds.SeriesInstanceUID)
|
||||
);
|
||||
return referencedDisplaySet;
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns a list of derived datasets in the study, filtered by the given filter.
|
||||
* @param {object} filter An object containing search filters
|
||||
@@ -252,19 +333,9 @@ export class StudyMetadata extends Metadata {
|
||||
if (referencedSeriesInstanceUID) {
|
||||
filteredDerivedDisplaySets = filteredDerivedDisplaySets.filter(
|
||||
displaySet => {
|
||||
if (!displaySet.metadata.ReferencedSeriesSequence) {
|
||||
return false;
|
||||
}
|
||||
|
||||
const ReferencedSeriesSequence = Array.isArray(
|
||||
displaySet.metadata.ReferencedSeriesSequence
|
||||
)
|
||||
? displaySet.metadata.ReferencedSeriesSequence
|
||||
: [displaySet.metadata.ReferencedSeriesSequence];
|
||||
|
||||
return ReferencedSeriesSequence.some(
|
||||
ReferencedSeries =>
|
||||
ReferencedSeries.SeriesInstanceUID === referencedSeriesInstanceUID
|
||||
return (
|
||||
StudyMetadata.getReferencedDisplaySet(displaySet, [this])
|
||||
.SeriesInstanceUID === referencedSeriesInstanceUID
|
||||
);
|
||||
}
|
||||
);
|
||||
@@ -273,8 +344,7 @@ export class StudyMetadata extends Metadata {
|
||||
if (referencedFrameOfReferenceUID) {
|
||||
filteredDerivedDisplaySets = filteredDerivedDisplaySets.filter(
|
||||
displaySet =>
|
||||
displaySet.ReferencedFrameOfReferenceUID ===
|
||||
referencedFrameOfReferenceUID
|
||||
displaySet.FrameOfReferenceUID === referencedFrameOfReferenceUID
|
||||
);
|
||||
}
|
||||
|
||||
@@ -459,6 +529,14 @@ export class StudyMetadata extends Metadata {
|
||||
}
|
||||
}
|
||||
|
||||
if (
|
||||
this._displaySets.some(
|
||||
ds => ds.displaySetInstanceUID === displaySet.displaySetInstanceUID
|
||||
)
|
||||
) {
|
||||
return;
|
||||
}
|
||||
|
||||
this._displaySets.splice(insertIndex, 0, displaySet);
|
||||
this.displaySets = this._displaySets;
|
||||
}
|
||||
@@ -767,6 +845,16 @@ const isMultiFrame = instance => {
|
||||
return instance.getTagValue('NumberOfFrames') > 1;
|
||||
};
|
||||
|
||||
/**
|
||||
* Creates a display set for a series.
|
||||
* Checks if a series is reconstructable to a 3D volume.
|
||||
* If reconstructable, the frames are sorted.
|
||||
*
|
||||
* @param {SeriesMetadata} series The series metadata object from which the display sets will be created
|
||||
* @param {Object[]} instances An array of `OHIFInstanceMetadata` objects.
|
||||
*
|
||||
* @returns {Object} imageSet.
|
||||
*/
|
||||
const makeDisplaySet = (series, instances) => {
|
||||
const instance = instances[0];
|
||||
const imageSet = new ImageSet(instances);
|
||||
@@ -786,7 +874,7 @@ const makeDisplaySet = (series, instances) => {
|
||||
isMultiFrame: isMultiFrame(instance),
|
||||
});
|
||||
|
||||
// Sort the images in this series if needed
|
||||
// Sort the images in this series by instanceNumber
|
||||
const shallSort = true; //!OHIF.utils.ObjectPath.get(Meteor, 'settings.public.ui.sortSeriesByIncomingOrder');
|
||||
if (shallSort) {
|
||||
imageSet.sortBy((a, b) => {
|
||||
@@ -804,20 +892,39 @@ const makeDisplaySet = (series, instances) => {
|
||||
imageSet.getImage(0).getTagValue('InstanceNumber')
|
||||
);
|
||||
|
||||
const isReconstructable = isDisplaySetReconstructable(instances);
|
||||
|
||||
imageSet.isReconstructable = isReconstructable.value;
|
||||
const displayReconstructableInfo = isDisplaySetReconstructable(instances);
|
||||
imageSet.isReconstructable = displayReconstructableInfo.value;
|
||||
|
||||
let displaySpacingInfo = undefined;
|
||||
if (shallSort && imageSet.isReconstructable) {
|
||||
// sort images by image position
|
||||
imageSet.sortByImagePositionPatient();
|
||||
|
||||
// check if the spacing is uniform and update isReconstructable
|
||||
const datasetIs4D = displayReconstructableInfo.reconstructionIssues.find(
|
||||
issue => issue === ReconstructionIssues.DATASET_4D
|
||||
);
|
||||
displaySpacingInfo = isSpacingUniform(imageSet.images, datasetIs4D);
|
||||
imageSet.isReconstructable = displaySpacingInfo.isUniform;
|
||||
|
||||
if (displaySpacingInfo.missingFrames) {
|
||||
// TODO -> This is currently unused, but may be used for reconstructing
|
||||
// Volumes with gaps later on.
|
||||
imageSet.missingFrames = displaySpacingInfo.missingFrames;
|
||||
}
|
||||
}
|
||||
|
||||
if (isReconstructable.missingFrames) {
|
||||
// TODO -> This is currently unused, but may be used for reconstructing
|
||||
// Volumes with gaps later on.
|
||||
imageSet.missingFrames = isReconstructable.missingFrames;
|
||||
if (!imageSet.displayReconstructableInfo) {
|
||||
// It is not reconstrabale Save type of warning
|
||||
imageSet.reconstructionIssues = displaySpacingInfo
|
||||
? displayReconstructableInfo.reconstructionIssues.concat(
|
||||
displaySpacingInfo.reconstructionIssues
|
||||
)
|
||||
: displayReconstructableInfo.reconstructionIssues;
|
||||
}
|
||||
|
||||
imageSet.isModalitySupported = true;
|
||||
|
||||
return imageSet;
|
||||
};
|
||||
|
||||
@@ -878,6 +985,7 @@ function _getDisplaySetFromSopClassModule(
|
||||
url: study.getData().wadoRoot,
|
||||
headers,
|
||||
errorInterceptor,
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
});
|
||||
|
||||
let displaySet = plugin.getDisplaySetFromSeries(
|
||||
@@ -892,3 +1000,149 @@ function _getDisplaySetFromSopClassModule(
|
||||
}
|
||||
return displaySet;
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the referenced series instance UIDs by searching the information in the
|
||||
* ReferencedSeriesSequence.
|
||||
* @param {object} derivatedDisplaySet.metadata
|
||||
* @return {array[string]} referenced series instance UIDs.
|
||||
*/
|
||||
function _findReferencedSeriesInstanceUIDsFromReferencedSeriesSequence(
|
||||
metadata
|
||||
) {
|
||||
if (!metadata.ReferencedSeriesSequence) {
|
||||
return;
|
||||
}
|
||||
|
||||
let referencedSeriesInstanceUIDs;
|
||||
const ReferencedSeriesSequence = _toArray(metadata.ReferencedSeriesSequence);
|
||||
|
||||
referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
|
||||
ReferencedSeries => ReferencedSeries.SeriesInstanceUID
|
||||
);
|
||||
|
||||
return referencedSeriesInstanceUIDs;
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the referenced series instance UIDs by searching the information in the
|
||||
* ReferencedImageSequence.
|
||||
* @param {object} derivatedDisplaySet.metadata
|
||||
* @param {array[object]} displaysets
|
||||
* @return {array[string]} referenced series instance UIDs.
|
||||
*/
|
||||
function _findReferencedSeriesInstanceUIDsFromReferencedImageSequence(
|
||||
metadata,
|
||||
displaySets
|
||||
) {
|
||||
if (!metadata.ReferencedImageSequence) {
|
||||
return;
|
||||
}
|
||||
|
||||
let referencedSeriesInstanceUIDs;
|
||||
const referencedImageArray = _toArray(metadata.ReferencedImageSequence);
|
||||
for (let i = 0; i < referencedImageArray.length; i++) {
|
||||
const { ReferencedSOPInstanceUID } = referencedImageArray[i];
|
||||
if (!ReferencedSOPInstanceUID) {
|
||||
continue;
|
||||
}
|
||||
|
||||
referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromSOPInstanceUID(
|
||||
displaySets,
|
||||
ReferencedSOPInstanceUID
|
||||
);
|
||||
|
||||
if (
|
||||
referencedSeriesInstanceUIDs &&
|
||||
referencedSeriesInstanceUIDs.length !== 0
|
||||
) {
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
return referencedSeriesInstanceUIDs;
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the referenced series instance UIDs by searching the information in the
|
||||
* SourceImageSequence.
|
||||
* @param {object} derivatedDisplaySet.metadata
|
||||
* @param {array[object]} displaysets
|
||||
* @return {array[string]} referenced series instance UIDs.
|
||||
*/
|
||||
function _findReferencedSeriesInstanceUIDsFromSourceImageSequence(
|
||||
metadata,
|
||||
displaySets
|
||||
) {
|
||||
let SourceImageSequence;
|
||||
|
||||
if (metadata.SourceImageSequence) {
|
||||
SourceImageSequence = metadata.SourceImageSequence;
|
||||
} else {
|
||||
const { PerFrameFunctionalGroupsSequence } = metadata;
|
||||
const firstFunctionalGroups = _toArray(PerFrameFunctionalGroupsSequence)[0];
|
||||
if (firstFunctionalGroups) {
|
||||
const { DerivationImageSequence } = firstFunctionalGroups;
|
||||
SourceImageSequence = DerivationImageSequence;
|
||||
}
|
||||
}
|
||||
|
||||
if (!SourceImageSequence) {
|
||||
return;
|
||||
}
|
||||
|
||||
const sourceImageArray = _toArray(SourceImageSequence);
|
||||
|
||||
let referencedSeriesInstanceUIDs;
|
||||
for (let i = 0; i < sourceImageArray.length; i++) {
|
||||
const { ReferencedSOPInstanceUID } = sourceImageArray[i];
|
||||
referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromSOPInstanceUID(
|
||||
displaySets,
|
||||
ReferencedSOPInstanceUID
|
||||
);
|
||||
if (
|
||||
referencedSeriesInstanceUIDs &&
|
||||
referencedSeriesInstanceUIDs.length !== 0
|
||||
) {
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
return referencedSeriesInstanceUIDs;
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the referenced series instance UIDs by searching the information in the
|
||||
* SOPInstanceUID of the displaySets.
|
||||
* @param {array[object]} displaysets
|
||||
* @param {string} SOPInstanceUID
|
||||
* @return {array[string]} referenced series instance UIDs.
|
||||
*/
|
||||
function _findReferencedSeriesInstanceUIDsFromSOPInstanceUID(
|
||||
displaySets,
|
||||
SOPInstanceUID
|
||||
) {
|
||||
const imageSets = displaySets.filter(ds => ds instanceof ImageSet);
|
||||
|
||||
for (let i = 0; i < imageSets.length; i++) {
|
||||
const { images } = imageSets[i];
|
||||
if (!images) {
|
||||
continue;
|
||||
}
|
||||
for (let j = 0; j < images.length; j++) {
|
||||
const image = images[j];
|
||||
if (!image) {
|
||||
continue;
|
||||
}
|
||||
if (image.SOPInstanceUID === SOPInstanceUID) {
|
||||
return [image.getData().metadata.SeriesInstanceUID];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
function _toArray(arrayOrObject) {
|
||||
return Array.isArray(arrayOrObject) ? arrayOrObject : [arrayOrObject];
|
||||
}
|
||||
|
||||
export { StudyMetadata };
|
||||
@@ -0,0 +1,11 @@
|
||||
const ReconstructionIssues = {
|
||||
DATASET_4D: 'datasetis4D',
|
||||
VARYING_IMAGESDIMENSIONS: 'imagesdimensionsvarying',
|
||||
VARYING_IMAGESCOMPONENTS: 'imagescomponentsvarying',
|
||||
VARYING_IMAGESORIENTATION: 'imagesorientationvarying',
|
||||
MISSING_FRAMES: 'missingframes',
|
||||
IRREGULAR_SPACING: 'irregularspacing',
|
||||
MULTIFFRAMES: 'multiframe',
|
||||
};
|
||||
|
||||
export {ReconstructionIssues};
|
||||
@@ -26,6 +26,7 @@ import {
|
||||
UIModalService,
|
||||
UIDialogService,
|
||||
MeasurementService,
|
||||
LoggerService,
|
||||
} from './services';
|
||||
|
||||
const OHIF = {
|
||||
@@ -60,6 +61,7 @@ const OHIF = {
|
||||
UIModalService,
|
||||
UIDialogService,
|
||||
MeasurementService,
|
||||
LoggerService,
|
||||
};
|
||||
|
||||
export {
|
||||
@@ -93,6 +95,7 @@ export {
|
||||
UIModalService,
|
||||
UIDialogService,
|
||||
MeasurementService,
|
||||
LoggerService,
|
||||
};
|
||||
|
||||
export { OHIF };
|
||||
|
||||
@@ -14,6 +14,7 @@ describe('Top level exports', () => {
|
||||
'UIModalService',
|
||||
'UIDialogService',
|
||||
'MeasurementService',
|
||||
'LoggerService',
|
||||
//
|
||||
'utils',
|
||||
'hotkeys',
|
||||
|
||||
@@ -78,17 +78,6 @@ export const setActiveViewportSpecificData = viewportSpecificData => ({
|
||||
/**
|
||||
* NOT-VIEWPORT
|
||||
*/
|
||||
export const setStudyLoadingProgress = (progressId, progressData) => ({
|
||||
type: 'SET_STUDY_LOADING_PROGRESS',
|
||||
progressId,
|
||||
progressData,
|
||||
});
|
||||
|
||||
export const clearStudyLoadingProgress = progressId => ({
|
||||
type: 'CLEAR_STUDY_LOADING_PROGRESS',
|
||||
progressId,
|
||||
});
|
||||
|
||||
export const setUserPreferences = state => ({
|
||||
type: SET_USER_PREFERENCES,
|
||||
state,
|
||||
@@ -134,8 +123,6 @@ const actions = {
|
||||
/**
|
||||
* NOT-VIEWPORT
|
||||
*/
|
||||
setStudyLoadingProgress,
|
||||
clearStudyLoadingProgress,
|
||||
setUserPreferences,
|
||||
setExtensionData,
|
||||
setTimepoints,
|
||||
|
||||
@@ -11,8 +11,6 @@ describe('actions', () => {
|
||||
'setLayout',
|
||||
'clearViewportSpecificData',
|
||||
'setActiveViewportSpecificData',
|
||||
'setStudyLoadingProgress',
|
||||
'clearStudyLoadingProgress',
|
||||
'setUserPreferences',
|
||||
'setExtensionData',
|
||||
'setTimepoints',
|
||||
|
||||
@@ -1,5 +1,4 @@
|
||||
import extensions from './extensions';
|
||||
import loading from './loading';
|
||||
import preferences from './preferences';
|
||||
import servers from './servers';
|
||||
import studies from './studies';
|
||||
@@ -8,7 +7,6 @@ import viewports from './viewports';
|
||||
|
||||
const reducers = {
|
||||
extensions,
|
||||
loading,
|
||||
preferences,
|
||||
servers,
|
||||
studies,
|
||||
|
||||
@@ -1,33 +0,0 @@
|
||||
import cloneDeep from 'lodash.clonedeep';
|
||||
|
||||
const defaultState = {
|
||||
progress: {},
|
||||
lastUpdated: null,
|
||||
};
|
||||
|
||||
const loading = (state = defaultState, action) => {
|
||||
let progress;
|
||||
let lastUpdated;
|
||||
switch (action.type) {
|
||||
case 'SET_STUDY_LOADING_PROGRESS':
|
||||
progress = cloneDeep(state).progress;
|
||||
progress[action.progressId] = action.progressData;
|
||||
|
||||
// This is a workaround so we can easily identify changes
|
||||
// to the progress object without doing deep comparison.
|
||||
lastUpdated = new Date().getTime();
|
||||
|
||||
return Object.assign({}, state, { progress, lastUpdated });
|
||||
case 'CLEAR_STUDY_LOADING_PROGRESS':
|
||||
progress = cloneDeep(state).progress;
|
||||
delete progress[action.progressId];
|
||||
|
||||
lastUpdated = new Date().getTime();
|
||||
|
||||
return Object.assign({}, state, { progress, lastUpdated });
|
||||
default:
|
||||
return state;
|
||||
}
|
||||
};
|
||||
|
||||
export default loading;
|
||||
@@ -0,0 +1,67 @@
|
||||
const name = 'LoggerService';
|
||||
|
||||
const publicAPI = {
|
||||
name,
|
||||
info: _info,
|
||||
error: _error,
|
||||
setServiceImplementation,
|
||||
};
|
||||
|
||||
const serviceImplementation = {
|
||||
_info: () => console.warn('info() NOT IMPLEMENTED'),
|
||||
_error: () => console.warn('error() NOT IMPLEMENTED'),
|
||||
};
|
||||
|
||||
/**
|
||||
* Logs an info
|
||||
*
|
||||
* @param {object} props { message, displayOnConsole }
|
||||
*/
|
||||
function _info({ message, displayOnConsole }) {
|
||||
return serviceImplementation._info({
|
||||
message,
|
||||
displayOnConsole,
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Logs an error
|
||||
*
|
||||
* @param {object} props { error, stack, message, displayOnConsole }
|
||||
* @returns void
|
||||
*/
|
||||
function _error({ error, stack, message, displayOnConsole }) {
|
||||
return serviceImplementation._error({
|
||||
error,
|
||||
stack,
|
||||
message,
|
||||
displayOnConsole,
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
*
|
||||
*
|
||||
* @param {*} {
|
||||
* info: infoImplementation,
|
||||
* error: errorImplementation,
|
||||
* }
|
||||
*/
|
||||
function setServiceImplementation({
|
||||
info: infoImplementation,
|
||||
error: errorImplementation,
|
||||
}) {
|
||||
if (infoImplementation) {
|
||||
serviceImplementation._info = infoImplementation;
|
||||
}
|
||||
if (errorImplementation) {
|
||||
serviceImplementation._error = errorImplementation;
|
||||
}
|
||||
}
|
||||
|
||||
export default {
|
||||
name,
|
||||
create: ({ configuration = {} }) => {
|
||||
return publicAPI;
|
||||
},
|
||||
};
|
||||
@@ -260,7 +260,6 @@ class MeasurementService {
|
||||
const sourceInfo = this._getSourceInfo(source);
|
||||
|
||||
if (!definition) {
|
||||
console.log('TEST');
|
||||
log.warn('No source definition provided. Exiting early.');
|
||||
return;
|
||||
}
|
||||
|
||||
@@ -3,6 +3,7 @@ import UINotificationService from './UINotificationService';
|
||||
import UIModalService from './UIModalService';
|
||||
import UIDialogService from './UIDialogService';
|
||||
import MeasurementService from './MeasurementService';
|
||||
import LoggerService from './LoggerService';
|
||||
|
||||
export {
|
||||
UINotificationService,
|
||||
@@ -10,4 +11,5 @@ export {
|
||||
UIDialogService,
|
||||
ServicesManager,
|
||||
MeasurementService,
|
||||
LoggerService,
|
||||
};
|
||||
@@ -0,0 +1,85 @@
|
||||
import { api } from 'dicomweb-client';
|
||||
|
||||
/**
|
||||
* An implementation of the static wado client, that fetches data from
|
||||
* a static response rather than actually doing real queries. This allows
|
||||
* fast encoding of test data, but because it is static, anything actually
|
||||
* performing searches doesn't work. This version fixes the query issue
|
||||
* by manually implementing a query option.
|
||||
*/
|
||||
export default class StaticWadoClient extends api.DICOMwebClient {
|
||||
static filterKeys = {
|
||||
StudyInstanceUID: '0020000D',
|
||||
PatientName: '00100010',
|
||||
PatientID: '00100020',
|
||||
StudyDescription: '00081030',
|
||||
ModalitiesInStudy: '00080061',
|
||||
};
|
||||
|
||||
constructor(qidoConfig) {
|
||||
super(qidoConfig);
|
||||
this.staticWado = qidoConfig.staticWado;
|
||||
this.extendMetadataWithInstances = qidoConfig.extendMetadataWithInstances;
|
||||
}
|
||||
|
||||
async retrieveSeriesMetadata(options) {
|
||||
if (!this.extendMetadataWithInstances)
|
||||
return super.retrieveSeriesMetadata(options);
|
||||
const results = await Promise.all([
|
||||
super.retrieveSeriesMetadata(options),
|
||||
this.searchForInstances(options),
|
||||
]);
|
||||
const metadata = results[0];
|
||||
const instances = results[1];
|
||||
return metadata.map(item => {
|
||||
const sopUID = item['00080018'].Value[0];
|
||||
const instance = instances.find(
|
||||
instance => instance['00080018'].Value[0] == sopUID
|
||||
);
|
||||
Object.assign(item, instance);
|
||||
return item;
|
||||
});
|
||||
}
|
||||
|
||||
async searchForStudies(options) {
|
||||
if (!this.staticWado) return super.searchForStudies(options);
|
||||
|
||||
let searchResult = await super.searchForStudies(options);
|
||||
const { queryParams } = options;
|
||||
if (!queryParams) return searchResult;
|
||||
const filtered = searchResult.filter(study => {
|
||||
for (const key of Object.keys(StaticWadoClient.filterKeys)) {
|
||||
if (!this.filterItem(key, queryParams, study)) return false;
|
||||
}
|
||||
return true;
|
||||
});
|
||||
return filtered;
|
||||
}
|
||||
|
||||
filterItem(key, queryParams, study) {
|
||||
const altKey = StaticWadoClient.filterKeys[key] || key;
|
||||
if (!queryParams) return true;
|
||||
const testValue = queryParams[key] || queryParams[altKey];
|
||||
if (!testValue) return true;
|
||||
const valueElem = study[key] || study[altKey];
|
||||
if (!valueElem) return false;
|
||||
const value = valueElem.Value;
|
||||
return this.eqItem(testValue, value);
|
||||
}
|
||||
|
||||
eqItem(testValue, value) {
|
||||
if (testValue.filter) {
|
||||
return (
|
||||
testValue.filter(testItem => this.eqItem(testItem, value)).length > 0
|
||||
);
|
||||
}
|
||||
if (value === testValue) return true;
|
||||
if (typeof value == 'string') {
|
||||
return value.indexOf(testValue) != -1;
|
||||
}
|
||||
if (value.Alphabetic) return this.eqItem(testValue, value.Alphabetic);
|
||||
if (value.filter)
|
||||
return value.filter(item => this.eqItem(testValue, item)).length > 0;
|
||||
return false;
|
||||
}
|
||||
}
|
||||
@@ -1,7 +1,9 @@
|
||||
import { api } from 'dicomweb-client';
|
||||
import StaticWadoClient from './StaticWadoClient';
|
||||
import DICOMWeb from '../../../DICOMWeb/';
|
||||
|
||||
import errorHandler from '../../../errorHandler';
|
||||
import getXHRRetryRequestHook from '../../../utils/xhrRetryRequestHook';
|
||||
|
||||
/**
|
||||
* Creates a QIDO date string for a date range query
|
||||
@@ -114,13 +116,18 @@ function resultDataToStudies(resultData) {
|
||||
}
|
||||
|
||||
export default function Studies(server, filter) {
|
||||
const { staticWado } = server;
|
||||
const config = {
|
||||
...server,
|
||||
url: server.qidoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
};
|
||||
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
const dicomWeb = staticWado
|
||||
? new StaticWadoClient(config)
|
||||
: new api.DICOMwebClient(config);
|
||||
server.qidoSupportsIncludeField =
|
||||
server.qidoSupportsIncludeField === undefined
|
||||
? true
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
import { api } from 'dicomweb-client';
|
||||
import StaticWadoClient from '../qido/StaticWadoClient';
|
||||
import dcmjs from 'dcmjs';
|
||||
import DICOMWeb from '../../../DICOMWeb/';
|
||||
import RetrieveMetadataLoader from './retrieveMetadataLoader';
|
||||
@@ -10,6 +10,7 @@ import {
|
||||
} from './studyInstanceHelpers';
|
||||
|
||||
import errorHandler from '../../../errorHandler';
|
||||
import { getXHRRetryRequestHook } from '../../../utils/xhrRetryRequestHook';
|
||||
|
||||
const { naturalizeDataset } = dcmjs.data.DicomMetaDictionary;
|
||||
|
||||
@@ -72,10 +73,12 @@ export default class RetrieveMetadataLoaderAsync extends RetrieveMetadataLoader
|
||||
configLoad() {
|
||||
const { server } = this;
|
||||
|
||||
const client = new api.DICOMwebClient({
|
||||
const client = new StaticWadoClient({
|
||||
...server,
|
||||
url: server.qidoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
});
|
||||
|
||||
this.client = client;
|
||||
|
||||
@@ -4,6 +4,7 @@ import { createStudyFromSOPInstanceList } from './studyInstanceHelpers';
|
||||
import RetrieveMetadataLoader from './retrieveMetadataLoader';
|
||||
|
||||
import errorHandler from '../../../errorHandler';
|
||||
import getXHRRetryRequestHook from '../../../utils/xhrRetryRequestHook';
|
||||
|
||||
/**
|
||||
* Class for sync load of study metadata.
|
||||
@@ -61,6 +62,7 @@ export default class RetrieveMetadataLoaderSync extends RetrieveMetadataLoader {
|
||||
url: server.wadoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
});
|
||||
|
||||
this.client = client;
|
||||
|
||||
@@ -116,6 +116,11 @@ async function makeSOPInstance(server, study, instance) {
|
||||
};
|
||||
study.seriesMap[SeriesInstanceUID] = series;
|
||||
study.series.push(series);
|
||||
} else {
|
||||
if (series.SeriesDate === undefined)
|
||||
series.SeriesDate = naturalizedInstance.SeriesDate;
|
||||
if (series.SeriesTime === undefined)
|
||||
series.SeriesTime = naturalizedInstance.SeriesTime;
|
||||
}
|
||||
|
||||
const wadouri = buildInstanceWadoUrl(
|
||||
|
||||
@@ -4,6 +4,7 @@ import { api } from 'dicomweb-client';
|
||||
import DICOMWeb from '../DICOMWeb';
|
||||
|
||||
import errorHandler from '../errorHandler';
|
||||
import getXHRRetryRequestHook from './xhrRetryRequestHook';
|
||||
|
||||
const getImageId = imageObj => {
|
||||
if (!imageObj) {
|
||||
@@ -66,6 +67,7 @@ const wadorsRetriever = (
|
||||
url,
|
||||
headers,
|
||||
errorInterceptor,
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
};
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
|
||||
|
||||
@@ -18,6 +18,7 @@ import isDicomUid from './isDicomUid';
|
||||
import resolveObjectPath from './resolveObjectPath';
|
||||
import * as hierarchicalListUtils from './hierarchicalListUtils';
|
||||
import * as progressTrackingUtils from './progressTrackingUtils';
|
||||
import xhrRetryRequestHook from './xhrRetryRequestHook';
|
||||
|
||||
const utils = {
|
||||
guid,
|
||||
@@ -40,6 +41,7 @@ const utils = {
|
||||
resolveObjectPath,
|
||||
hierarchicalListUtils,
|
||||
progressTrackingUtils,
|
||||
xhrRetryRequestHook,
|
||||
};
|
||||
|
||||
export {
|
||||
@@ -63,6 +65,7 @@ export {
|
||||
resolveObjectPath,
|
||||
hierarchicalListUtils,
|
||||
progressTrackingUtils,
|
||||
xhrRetryRequestHook,
|
||||
};
|
||||
|
||||
export default utils;
|
||||
@@ -23,6 +23,7 @@ describe('Top level exports', () => {
|
||||
'resolveObjectPath',
|
||||
'hierarchicalListUtils',
|
||||
'progressTrackingUtils',
|
||||
'xhrRetryRequestHook',
|
||||
].sort();
|
||||
|
||||
const exports = Object.keys(utils.default).sort();
|
||||
|
||||
@@ -1,9 +1,13 @@
|
||||
import { ReconstructionIssues } from './../enums.js';
|
||||
|
||||
/**
|
||||
* Checks if a series is reconstructable to a 3D volume.
|
||||
*
|
||||
* @param {Object[]} instances An array of `OHIFInstanceMetadata` objects.
|
||||
* @param {Object[]} An array of `OHIFInstanceMetadata` objects.
|
||||
*
|
||||
* @returns {Object} value, reconstructionIssues.
|
||||
*/
|
||||
export default function isDisplaySetReconstructable(instances) {
|
||||
function isDisplaySetReconstructable(instances) {
|
||||
if (!instances.length) {
|
||||
return { value: false };
|
||||
}
|
||||
@@ -23,31 +27,45 @@ export default function isDisplaySetReconstructable(instances) {
|
||||
}
|
||||
|
||||
if (isMultiframe) {
|
||||
return processMultiframe(instances[0]);
|
||||
return processMultiframe();
|
||||
} else {
|
||||
return processSingleframe(instances);
|
||||
}
|
||||
}
|
||||
|
||||
function processMultiframe(instance) {
|
||||
//TODO: deal with multriframe checks! return false for now as can't reconstruct.
|
||||
return { value: false };
|
||||
/**
|
||||
* Process reconstructable multiframes checks
|
||||
* TODO: deal with multriframe checks! return false for now as can't reconstruct.
|
||||
* *
|
||||
* @returns {Object} value and reconstructionIssues.
|
||||
*/
|
||||
function processMultiframe() {
|
||||
const reconstructionIssues = [ReconstructionIssues.MULTIFRAMES];
|
||||
return { value: false, reconstructionIssues };
|
||||
}
|
||||
|
||||
/**
|
||||
* Process reconstructable single frame checks
|
||||
*
|
||||
* @param {Object[]} An array of `OHIFInstanceMetadata` objects.
|
||||
*
|
||||
* @returns {Object} value and reconstructionIssues.
|
||||
*/
|
||||
function processSingleframe(instances) {
|
||||
const n = instances.length;
|
||||
const firstImage = instances[0].getData().metadata;
|
||||
const firstImageRows = firstImage.Rows;
|
||||
const firstImageColumns = firstImage.Columns;
|
||||
const firstImageSamplesPerPixel = firstImage.SamplesPerPixel;
|
||||
const firstImageOrientationPatient = firstImage.ImageOrientationPatient;
|
||||
const firstImagePositionPatient = firstImage.ImagePositionPatient;
|
||||
|
||||
const reconstructionIssues = [];
|
||||
// Can't reconstruct if we:
|
||||
// -- Have a different dimensions within a displaySet.
|
||||
// -- Have a different number of components within a displaySet.
|
||||
// -- Have different orientations within a displaySet.
|
||||
for (let i = 1; i < instances.length; i++) {
|
||||
const instance = instances[i].getData().metadata;
|
||||
for (let ii = 1; ii < n; ++ii) {
|
||||
const instance = instances[ii].getData().metadata;
|
||||
const {
|
||||
Rows,
|
||||
Columns,
|
||||
@@ -55,67 +73,157 @@ function processSingleframe(instances) {
|
||||
ImageOrientationPatient,
|
||||
} = instance;
|
||||
|
||||
if (
|
||||
Rows !== firstImageRows ||
|
||||
Columns !== firstImageColumns ||
|
||||
SamplesPerPixel !== firstImageSamplesPerPixel ||
|
||||
!_isSameOrientation(ImageOrientationPatient, firstImageOrientationPatient)
|
||||
if (Rows !== firstImageRows || Columns !== firstImageColumns) {
|
||||
reconstructionIssues.push(ReconstructionIssues.VARYING_IMAGESDIMENSIONS);
|
||||
} else if (SamplesPerPixel !== firstImageSamplesPerPixel) {
|
||||
reconstructionIssues.push(ReconstructionIssues.VARYING_IMAGESCOMPONENTS);
|
||||
} else if (
|
||||
!_isSameArray(ImageOrientationPatient, firstImageOrientationPatient)
|
||||
) {
|
||||
return { value: false };
|
||||
reconstructionIssues.push(ReconstructionIssues.VARYING_IMAGESORIENTATION);
|
||||
}
|
||||
|
||||
if (reconstructionIssues.length !== 0) {
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
// check if dataset is 4D
|
||||
if (_isDataset4D(instances)) {
|
||||
reconstructionIssues.push(ReconstructionIssues.DATASET_4D);
|
||||
}
|
||||
|
||||
return {
|
||||
value: reconstructionIssues.length === 0 ? true : false,
|
||||
reconstructionIssues,
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
* Check is the spacing is uniform.
|
||||
* The input metadata array has to be ordered by image position.
|
||||
*
|
||||
* @param {Object[]} An array of `OHIFInstanceMetadata` objects.
|
||||
* @param {boolean} is the dataset 4D.
|
||||
*
|
||||
* @returns {Object} isUniform, reconstructionIssues and missingFrames
|
||||
*/
|
||||
function isSpacingUniform(instances, datasetIs4D) {
|
||||
const n = instances.length;
|
||||
const firstImage = instances[0].getData().metadata;
|
||||
const firstImagePositionPatient = firstImage.ImagePositionPatient;
|
||||
|
||||
const reconstructionIssues = [];
|
||||
let missingFrames = 0;
|
||||
|
||||
// Check if frame spacing is approximately equal within a spacingTolerance.
|
||||
// If spacing is on a uniform grid but we are missing frames,
|
||||
// Allow reconstruction, but pass back the number of missing frames.
|
||||
if (instances.length > 2) {
|
||||
const lastIpp = instances[instances.length - 1].getData().metadata
|
||||
.ImagePositionPatient;
|
||||
if (n > 2) {
|
||||
const lastIpp = instances[n - 1].getData().metadata.ImagePositionPatient;
|
||||
|
||||
// We can't reconstruct if we are missing ImagePositionPatient values
|
||||
if (!firstImagePositionPatient || !lastIpp) {
|
||||
return { value: false };
|
||||
}
|
||||
if (firstImagePositionPatient && lastIpp) {
|
||||
const averageSpacingBetweenFrames =
|
||||
_getPerpendicularDistance(firstImagePositionPatient, lastIpp) / (n - 1);
|
||||
|
||||
const averageSpacingBetweenFrames =
|
||||
_getPerpendicularDistance(firstImagePositionPatient, lastIpp) /
|
||||
(instances.length - 1);
|
||||
let previousImagePositionPatient = firstImagePositionPatient;
|
||||
|
||||
let previousImagePositionPatient = firstImagePositionPatient;
|
||||
for (let ii = 1; ii < n; ++ii) {
|
||||
const instance = instances[ii].getData().metadata;
|
||||
const { ImagePositionPatient } = instance;
|
||||
|
||||
for (let i = 1; i < instances.length; i++) {
|
||||
const instance = instances[i].getData().metadata;
|
||||
const { ImagePositionPatient } = instance;
|
||||
const spacingBetweenFrames = _getPerpendicularDistance(
|
||||
ImagePositionPatient,
|
||||
previousImagePositionPatient
|
||||
);
|
||||
|
||||
const spacingBetweenFrames = _getPerpendicularDistance(
|
||||
ImagePositionPatient,
|
||||
previousImagePositionPatient
|
||||
);
|
||||
const spacingIssue = _getSpacingIssue(
|
||||
spacingBetweenFrames,
|
||||
averageSpacingBetweenFrames
|
||||
);
|
||||
|
||||
if (spacingIssue) {
|
||||
const issue = spacingIssue.issue;
|
||||
|
||||
if (issue === reconstructionIssues.MISSING_FRAMES) {
|
||||
missingFrames += spacingIssue.missingFrames;
|
||||
} else if (issue === reconstructionIssues.IRREGULAR_SPACING) {
|
||||
return { value: false };
|
||||
if (datasetIs4D && spacingBetweenFrames < 1e-3) {
|
||||
// the dataset is 4D, if the distance is zero, means that we are
|
||||
// checking the 4th dimension. Do not return, since we want still to
|
||||
// check the 3rd dimension spacing.
|
||||
continue;
|
||||
}
|
||||
}
|
||||
|
||||
previousImagePositionPatient = ImagePositionPatient;
|
||||
const spacingIssue = _getSpacingIssue(
|
||||
spacingBetweenFrames,
|
||||
averageSpacingBetweenFrames
|
||||
);
|
||||
|
||||
if (spacingIssue) {
|
||||
const issue = spacingIssue.issue;
|
||||
|
||||
if (issue === ReconstructionIssues.MISSING_FRAMES) {
|
||||
missingFrames += spacingIssue.missingFrames;
|
||||
} else if (issue === ReconstructionIssues.IRREGULAR_SPACING) {
|
||||
reconstructionIssues.push(issue);
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
previousImagePositionPatient = ImagePositionPatient;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return { value: true, missingFrames };
|
||||
return {
|
||||
isUniform: reconstructionIssues.length === 0 ? true : false,
|
||||
missingFrames,
|
||||
reconstructionIssues,
|
||||
};
|
||||
}
|
||||
|
||||
function _isSameOrientation(iop1, iop2) {
|
||||
/**
|
||||
* Check if 4D dataset.
|
||||
*
|
||||
* Assuming that slices at different time have the same position, here we just check if
|
||||
* there are multiple slices for the same ImagePositionPatient and disable MPR.
|
||||
*
|
||||
* A better heuristic would be checking 4D tags, e.g. the presence of multiple TemporalPositionIdentifier values.
|
||||
* However, some studies (e.g. https://github.com/OHIF/Viewers/issues/2113) do not have such tags.
|
||||
*
|
||||
* @param {Object[]} instances An array of `OHIFInstanceMetadata` objects.
|
||||
*
|
||||
* @returns {boolean} dataset4D value.
|
||||
*/
|
||||
function _isDataset4D(instances) {
|
||||
const n = instances.length;
|
||||
for (let ii = 0; ii < n; ++ii) {
|
||||
const instanceMetadataControl = instances[ii].getData().metadata;
|
||||
if (
|
||||
!instanceMetadataControl ||
|
||||
instanceMetadataControl === undefined ||
|
||||
!instanceMetadataControl.ImagePositionPatient ||
|
||||
instanceMetadataControl.ImagePositionPatient === undefined
|
||||
) {
|
||||
continue;
|
||||
}
|
||||
for (let jj = ii + 1; jj < n; ++jj) {
|
||||
const instanceMetadata = instances[jj].getData().metadata;
|
||||
if (
|
||||
!instanceMetadata ||
|
||||
instanceMetadata === undefined ||
|
||||
!instanceMetadata.ImagePositionPatient ||
|
||||
instanceMetadata.ImagePositionPatient === undefined
|
||||
) {
|
||||
continue;
|
||||
}
|
||||
|
||||
if (
|
||||
_isSameArray(
|
||||
instanceMetadataControl.ImagePositionPatient,
|
||||
instanceMetadata.ImagePositionPatient
|
||||
)
|
||||
) {
|
||||
return true;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return false;
|
||||
}
|
||||
|
||||
function _isSameArray(iop1, iop2) {
|
||||
if (iop1 === undefined || !iop2 === undefined) {
|
||||
return;
|
||||
}
|
||||
@@ -156,24 +264,22 @@ function _getSpacingIssue(spacing, averageSpacing) {
|
||||
|
||||
if (errorForEachSpacing < spacingTolerance * averageSpacing) {
|
||||
return {
|
||||
issue: reconstructionIssues.MISSING_FRAMES,
|
||||
issue: ReconstructionIssues.MISSING_FRAMES,
|
||||
missingFrames: numberOfSpacings - 1,
|
||||
};
|
||||
}
|
||||
|
||||
return { issue: reconstructionIssues.IRREGULAR_SPACING };
|
||||
return { issue: ReconstructionIssues.IRREGULAR_SPACING };
|
||||
}
|
||||
|
||||
function _getPerpendicularDistance(a, b) {
|
||||
return Math.sqrt(
|
||||
Math.pow(a[0] - b[0], 2) +
|
||||
Math.pow(a[1] - b[1], 2) +
|
||||
Math.pow(a[2] - b[2], 2)
|
||||
Math.pow(a[1] - b[1], 2) +
|
||||
Math.pow(a[2] - b[2], 2)
|
||||
);
|
||||
}
|
||||
|
||||
const constructableModalities = ['MR', 'CT', 'PT', 'NM'];
|
||||
const reconstructionIssues = {
|
||||
MISSING_FRAMES: 'missingframes',
|
||||
IRREGULAR_SPACING: 'irregularspacing',
|
||||
};
|
||||
|
||||
export { isDisplaySetReconstructable, isSpacingUniform };
|
||||
@@ -45,13 +45,13 @@ import studyMetadataManager from './studyMetadataManager';
|
||||
* @param {string} referencedDisplaySet.studyInstanceUid
|
||||
* @param {Array} referencedDisplaySet.sopClassUids
|
||||
* @param {Study[]} studies Collection of studies
|
||||
* @param {object} logger
|
||||
* @param {object} snackbar
|
||||
* @returns void
|
||||
*/
|
||||
const loadAndCacheDerivedDisplaySets = (referencedDisplaySet, studies) => {
|
||||
async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, logger, snackbar) {
|
||||
const { StudyInstanceUID, SeriesInstanceUID } = referencedDisplaySet;
|
||||
|
||||
const promises = [];
|
||||
|
||||
const studyMetadata = studyMetadataManager.get(StudyInstanceUID);
|
||||
|
||||
if (!studyMetadata) {
|
||||
@@ -80,11 +80,10 @@ const loadAndCacheDerivedDisplaySets = (referencedDisplaySet, studies) => {
|
||||
});
|
||||
|
||||
// For each type, see if any are loaded, if not load the most recent.
|
||||
Object.keys(displaySetsPerModality).forEach(key => {
|
||||
await Promise.all(Object.keys(displaySetsPerModality).map(async (key) => {
|
||||
const displaySets = displaySetsPerModality[key];
|
||||
|
||||
const isLoaded = displaySets.some(displaySet => displaySet.isLoaded);
|
||||
|
||||
if (isLoaded) {
|
||||
return;
|
||||
}
|
||||
@@ -107,12 +106,34 @@ const loadAndCacheDerivedDisplaySets = (referencedDisplaySet, studies) => {
|
||||
}
|
||||
});
|
||||
|
||||
recentDisplaySet.isLoading = true;
|
||||
try {
|
||||
if (recentDisplaySet.hasOwnProperty('getSourceDisplaySet') &&
|
||||
typeof recentDisplaySet.getSourceDisplaySet === 'function') {
|
||||
await recentDisplaySet.getSourceDisplaySet(studies);
|
||||
} else {
|
||||
await recentDisplaySet.load(referencedDisplaySet, studies);
|
||||
}
|
||||
} catch (error) {
|
||||
recentDisplaySet.isLoaded = false;
|
||||
recentDisplaySet.loadError = true;
|
||||
logger.error({ error, message: error.message });
|
||||
snackbar.show({
|
||||
title: 'Error loading derived display set:',
|
||||
message: error.message,
|
||||
type: 'error',
|
||||
error,
|
||||
autoClose: false,
|
||||
});
|
||||
}
|
||||
}));
|
||||
|
||||
promises.push(recentDisplaySet.load(referencedDisplaySet, studies));
|
||||
});
|
||||
|
||||
return promises;
|
||||
/*
|
||||
* TODO: Improve the way we notify parts of the app
|
||||
* that depends on derived display sets to be loaded.
|
||||
* (Implement pubsub for better tracking of derived display sets)
|
||||
*/
|
||||
const event = new CustomEvent('deriveddisplaysetsloadedandcached');
|
||||
document.dispatchEvent(event);
|
||||
};
|
||||
|
||||
export default loadAndCacheDerivedDisplaySets;
|
||||
@@ -4,6 +4,7 @@ import str2ab from '../str2ab';
|
||||
import unpackOverlay from './unpackOverlay';
|
||||
|
||||
import errorHandler from '../../errorHandler';
|
||||
import getXHRRetryRequestHook from '../xhrRetryRequestHook';
|
||||
|
||||
export default async function fetchOverlayData(instance, server) {
|
||||
const OverlayDataPromises = [];
|
||||
@@ -69,6 +70,7 @@ async function _getOverlayData(tag, server) {
|
||||
url: server.wadoRoot, //BulkDataURI is absolute, so this isn't used
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
};
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
const options = {
|
||||
|
||||
@@ -3,6 +3,7 @@ import DICOMWeb from '../../DICOMWeb';
|
||||
import str2ab from '../str2ab';
|
||||
|
||||
import errorHandler from '../../errorHandler';
|
||||
import getXHRRetryRequestHook from '../xhrRetryRequestHook';
|
||||
|
||||
export default async function fetchPaletteColorLookupTableData(
|
||||
instance,
|
||||
@@ -141,6 +142,7 @@ function _getPaletteColor(server, paletteColorLookupTableData, lutDescriptor) {
|
||||
url: server.wadoRoot, //BulkDataURI is absolute, so this isn't used
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
};
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
const options = {
|
||||
|
||||
@@ -0,0 +1,9 @@
|
||||
const validNumber = val => {
|
||||
if (Array.isArray(val)) {
|
||||
return val.map(v => (v !== undefined ? Number(v) : v));
|
||||
} else {
|
||||
return val !== undefined ? Number(val) : val;
|
||||
}
|
||||
};
|
||||
|
||||
export default validNumber;
|
||||
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Reference in new issue
Block a user