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+35
-27
@@ -48,12 +48,12 @@ jobs:
|
||||
- checkout:
|
||||
post:
|
||||
- git fetch --all
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
# - restore_cache:
|
||||
# name: Restore Yarn and Cypress Package Cache
|
||||
# keys:
|
||||
# # when lock file changes, use increasingly general patterns to restore cache
|
||||
# - yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# - yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
@@ -107,12 +107,12 @@ jobs:
|
||||
post:
|
||||
- git fetch --all
|
||||
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
# - restore_cache:
|
||||
# name: Restore Yarn and Cypress Package Cache
|
||||
# keys:
|
||||
# # when lock file changes, use increasingly general patterns to restore cache
|
||||
# - yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# - yarn-packages-
|
||||
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
@@ -143,12 +143,12 @@ jobs:
|
||||
- checkout:
|
||||
post:
|
||||
- git fetch --all
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
# - restore_cache:
|
||||
# name: Restore Yarn and Cypress Package Cache
|
||||
# keys:
|
||||
# # when lock file changes, use increasingly general patterns to restore cache
|
||||
# - yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# - yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
@@ -237,11 +237,11 @@ jobs:
|
||||
post:
|
||||
- git fetch --all
|
||||
# Use increasingly general patterns to restore cache
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
# - restore_cache:
|
||||
# name: Restore Yarn and Cypress Package Cache
|
||||
# keys:
|
||||
# - yarn-packages-{{ checksum "yarn.lock" }}
|
||||
# - yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
@@ -346,7 +346,9 @@ workflows:
|
||||
record: true
|
||||
store_artifacts: true
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build
|
||||
build:
|
||||
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
yarn run build
|
||||
start: yarn run test:e2e:serve
|
||||
spec: 'cypress/integration/common/**/*,cypress/integration/pwa/**/*'
|
||||
wait-on: 'http://localhost:3000'
|
||||
@@ -372,7 +374,9 @@ workflows:
|
||||
record: true
|
||||
store_artifacts: true
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build:package
|
||||
build:
|
||||
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
yarn run build:package
|
||||
start: yarn run test:e2e:serve
|
||||
spec: 'cypress/integration/common/**/*,cypress/integration/script-tag/**/*'
|
||||
wait-on: 'http://localhost:3000'
|
||||
@@ -403,7 +407,9 @@ workflows:
|
||||
yarn: true
|
||||
store_artifacts: false
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build
|
||||
build:
|
||||
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
yarn run build
|
||||
# start server --> verify running --> percy + chrome + cypress
|
||||
command: yarn run test:e2e:dist
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
@@ -480,7 +486,9 @@ workflows:
|
||||
yarn: true
|
||||
store_artifacts: false
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js yarn run build
|
||||
build:
|
||||
npx cross-env QUICK_BUILD=true APP_CONFIG=config/dicomweb-server.js
|
||||
yarn run build
|
||||
# start server --> verify running --> percy + chrome + cypress
|
||||
command: yarn run test:e2e:dist
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
|
||||
@@ -9,6 +9,7 @@ src/version.js
|
||||
junit.xml
|
||||
coverage/
|
||||
.docz/
|
||||
*.js.map
|
||||
|
||||
# YALC (for Erik)
|
||||
.yalc
|
||||
@@ -34,3 +35,4 @@ screenshots/
|
||||
|
||||
# Locize settings
|
||||
.locize
|
||||
|
||||
Vendored
+15
@@ -0,0 +1,15 @@
|
||||
{
|
||||
// Use IntelliSense to learn about possible attributes.
|
||||
// Hover to view descriptions of existing attributes.
|
||||
// For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
|
||||
"version": "0.2.0",
|
||||
"configurations": [
|
||||
{
|
||||
"type": "pwa-chrome",
|
||||
"request": "launch",
|
||||
"name": "Launch Chrome against localhost",
|
||||
"url": "http://localhost:3000",
|
||||
"webRoot": "${workspaceFolder}"
|
||||
}
|
||||
]
|
||||
}
|
||||
@@ -0,0 +1,24 @@
|
||||
cff-version: 1.2.0
|
||||
message: "If you use this software, please cite it as below."
|
||||
authors:
|
||||
- family-names: "Ziegler"
|
||||
given-names: "Erik"
|
||||
orcid: "https://orcid.org/0000-0003-1857-8129"
|
||||
- family-names: "Urban"
|
||||
given-names: "Trinity"
|
||||
- family-names: "Brown"
|
||||
given-names: "Danny"
|
||||
- family-names: "Petts"
|
||||
given-names: "James"
|
||||
- family-names: "Pieper"
|
||||
given-names: "Steve D"
|
||||
- family-names: "Lewis"
|
||||
given-names: "Rob"
|
||||
- family-names: "Hafey"
|
||||
given-names: "Chris"
|
||||
- family-names: "Harris"
|
||||
given-names: "Gordon J"
|
||||
title: "Open Health Imaging Foundation Viewer: An Extensible Open-Source Framework for Building Web-Based Imaging Applications to Support Cancer Research"
|
||||
doi: 10.1200/CCI.19.00131
|
||||
version: 1.0.0
|
||||
url: "https://github.com/OHIF/Viewers"
|
||||
+3
-2
@@ -21,7 +21,7 @@
|
||||
|
||||
# Stage 1: Build the application
|
||||
# docker build -t ohif/viewer:latest .
|
||||
FROM node:10.16.3-slim as builder
|
||||
FROM node:15.13.0-slim as builder
|
||||
|
||||
RUN mkdir /usr/src/app
|
||||
WORKDIR /usr/src/app
|
||||
@@ -39,6 +39,7 @@ COPY package.json /usr/src/app/package.json
|
||||
COPY postcss.config.js /usr/src/app/postcss.config.js
|
||||
COPY yarn.lock /usr/src/app/yarn.lock
|
||||
|
||||
RUN apt-get update && apt-get install -y python make g++
|
||||
# Run the install before copying the rest of the files
|
||||
RUN yarn config set workspaces-experimental true
|
||||
RUN yarn install
|
||||
@@ -52,7 +53,7 @@ RUN yarn run build
|
||||
|
||||
# Stage 2: Bundle the built application into a Docker container
|
||||
# which runs Nginx using Alpine Linux
|
||||
FROM nginx:1.15.5-alpine
|
||||
FROM nginx:1.21.1-alpine
|
||||
RUN apk add --no-cache bash
|
||||
RUN rm -rf /etc/nginx/conf.d
|
||||
COPY .docker/Viewer-v2.x /etc/nginx/conf.d
|
||||
|
||||
@@ -248,9 +248,6 @@ To acknowledge the OHIF Viewer in an academic publication, please cite
|
||||
>
|
||||
> _Cancer Research_, November 1 2017 (77) (21) e119-e122 DOI:
|
||||
> [10.1158/0008-5472.CAN-17-0334](https://www.doi.org/10.1158/0008-5472.CAN-17-0334)
|
||||
>
|
||||
> NCI Imaging Data Commons: contract number 19X037Q from Leidos Biomedical
|
||||
> Research under Task Order HHSN26100071 from NCI.
|
||||
|
||||
**Note:** If you use or find this repository helpful, please take the time to
|
||||
star this repository on Github. This is an easy way for us to assess adoption
|
||||
@@ -261,6 +258,22 @@ Cancer Institute, Informatics Technology for Cancer Research (ITCR) program,
|
||||
under a
|
||||
[grant to Dr. Gordon Harris at Massachusetts General Hospital (U24 CA199460)](https://projectreporter.nih.gov/project_info_description.cfm?aid=8971104).
|
||||
|
||||
## Projects that contributed to OHIF Viewer
|
||||
|
||||
The following is a (partial) list of projects that contributed resources towards
|
||||
development of OHIF Viewer:
|
||||
|
||||
- [NCI Imaging Data Commons (IDC) project](https://imaging.datacommons.cancer.gov/)
|
||||
supported development of new features and bug fixes marked with
|
||||
["IDC:priority"](https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3AIDC%3Apriority),
|
||||
["IDC:candidate"](https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3AIDC%3Acandidate)
|
||||
or
|
||||
["IDC:collaboration"](https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3AIDC%3Acollaboration).
|
||||
NCI Imaging Data Commons is supported by the contract number 19X037Q from
|
||||
Leidos Biomedical Research under Task Order HHSN26100071 from NCI.
|
||||
[IDC Viewer](https://learn.canceridc.dev/portal/visualization) is a customized
|
||||
version of the OHIF Viewer.
|
||||
|
||||
## License
|
||||
|
||||
MIT © [OHIF](https://github.com/OHIF)
|
||||
|
||||
@@ -8,7 +8,6 @@
|
||||
"-fontsettings",
|
||||
"github",
|
||||
"ga",
|
||||
"sitemap",
|
||||
"anchors",
|
||||
"versions"
|
||||
],
|
||||
@@ -24,7 +23,8 @@
|
||||
"token": "UA-110573590-2"
|
||||
},
|
||||
"sitemap": {
|
||||
"hostname": "https://docs.ohif.org"
|
||||
"hostname": "https://docs.ohif.org",
|
||||
"todo": "sitemap plugin removed; causing build errors"
|
||||
},
|
||||
"versions": {
|
||||
"gitbookConfigURL": "https://raw.githubusercontent.com/OHIF/Viewers/master/docs/book.json",
|
||||
|
||||
+2
-2
@@ -8,7 +8,6 @@
|
||||
"-fontsettings",
|
||||
"github",
|
||||
"ga",
|
||||
"sitemap",
|
||||
"anchors",
|
||||
"versions"
|
||||
],
|
||||
@@ -24,7 +23,8 @@
|
||||
"token": "UA-110573590-2"
|
||||
},
|
||||
"sitemap": {
|
||||
"hostname": "https://docs.ohif.org"
|
||||
"hostname": "https://docs.ohif.org",
|
||||
"todo": "sitemap plugin removed; causing build errors"
|
||||
},
|
||||
"versions": {
|
||||
"gitbookConfigURL": "https://raw.githubusercontent.com/OHIF/Viewers/master/docs/book.json",
|
||||
|
||||
@@ -3,6 +3,84 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [2.10.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.9...@ohif/extension-cornerstone@2.10.10) (2021-07-26)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* changed new image handler conditional for 0 edge case ([#2338](https://github.com/OHIF/Viewers/issues/2338)) ([b8ae92c](https://github.com/OHIF/Viewers/commit/b8ae92c2d4f733b3ca89826118029685650b396a))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.8...@ohif/extension-cornerstone@2.10.9) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.7...@ohif/extension-cornerstone@2.10.8) (2021-05-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.6...@ohif/extension-cornerstone@2.10.7) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.5...@ohif/extension-cornerstone@2.10.6) (2021-03-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.4...@ohif/extension-cornerstone@2.10.5) (2021-03-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.3...@ohif/extension-cornerstone@2.10.4) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.2...@ohif/extension-cornerstone@2.10.3) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.1...@ohif/extension-cornerstone@2.10.2) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.10.0...@ohif/extension-cornerstone@2.10.1) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone",
|
||||
"version": "2.10.1",
|
||||
"version": "2.10.10",
|
||||
"description": "OHIF extension for Cornerstone",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -36,7 +36,7 @@
|
||||
"cornerstone-math": "^0.1.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dcmjs": "0.17.2",
|
||||
"dcmjs": "0.18.8",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"hammerjs": "^2.0.8",
|
||||
"prop-types": "^15.6.2",
|
||||
@@ -51,6 +51,6 @@
|
||||
"classnames": "^2.2.6",
|
||||
"lodash.merge": "^4.6.2",
|
||||
"lodash.throttle": "^4.1.1",
|
||||
"react-cornerstone-viewport": "4.0.4"
|
||||
"react-cornerstone-viewport": "4.0.5"
|
||||
}
|
||||
}
|
||||
@@ -1,5 +1,6 @@
|
||||
import React, { Component } from 'react';
|
||||
|
||||
import OHIFCornerstoneViewportOverlay from './components/OHIFCornerstoneViewportOverlay'
|
||||
import ConnectedCornerstoneViewport from './ConnectedCornerstoneViewport';
|
||||
import OHIF from '@ohif/core';
|
||||
import PropTypes from 'prop-types';
|
||||
@@ -194,6 +195,7 @@ class OHIFCornerstoneViewport extends Component {
|
||||
return null;
|
||||
}
|
||||
const { viewportIndex } = this.props;
|
||||
const { inconsistencyWarnings } = this.props.viewportData.displaySet;
|
||||
const {
|
||||
imageIds,
|
||||
currentImageIdIndex,
|
||||
@@ -219,7 +221,7 @@ class OHIFCornerstoneViewport extends Component {
|
||||
const { displaySet } = this.props.viewportData;
|
||||
const { StudyInstanceUID } = displaySet;
|
||||
|
||||
if (currentImageIdIndex > 0) {
|
||||
if (currentImageIdIndex >= 0) {
|
||||
this.props.onNewImage({
|
||||
StudyInstanceUID,
|
||||
SOPInstanceUID: sopInstanceUid,
|
||||
@@ -229,14 +231,19 @@ class OHIFCornerstoneViewport extends Component {
|
||||
}
|
||||
};
|
||||
|
||||
const warningsOverlay = props => {
|
||||
return <OHIFCornerstoneViewportOverlay {...props} inconsistencyWarnings={inconsistencyWarnings} />
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
<ConnectedCornerstoneViewport
|
||||
viewportIndex={viewportIndex}
|
||||
imageIds={imageIds}
|
||||
imageIdIndex={currentImageIdIndex}
|
||||
onNewImage={newImageHandler}
|
||||
onNewImageDebounceTime={700}
|
||||
onNewImageDebounced={newImageHandler}
|
||||
onNewImageDebounceTime={300}
|
||||
viewportOverlayComponent={warningsOverlay}
|
||||
// ~~ Connected (From REDUX)
|
||||
// frameRate={frameRate}
|
||||
// isPlaying={false}
|
||||
|
||||
@@ -268,6 +268,7 @@ const commandsModule = ({ servicesManager }) => {
|
||||
SOPInstanceUID,
|
||||
frameIndex,
|
||||
activeViewportIndex,
|
||||
refreshViewports = true,
|
||||
}) => {
|
||||
const study = studyMetadataManager.get(StudyInstanceUID);
|
||||
|
||||
@@ -278,6 +279,10 @@ const commandsModule = ({ servicesManager }) => {
|
||||
);
|
||||
});
|
||||
|
||||
if (!displaySet) {
|
||||
return;
|
||||
}
|
||||
|
||||
displaySet.SOPInstanceUID = SOPInstanceUID;
|
||||
displaySet.frameIndex = frameIndex;
|
||||
|
||||
@@ -285,7 +290,9 @@ const commandsModule = ({ servicesManager }) => {
|
||||
setViewportSpecificData(activeViewportIndex, displaySet)
|
||||
);
|
||||
|
||||
refreshCornerstoneViewports();
|
||||
if (refreshViewports) {
|
||||
refreshCornerstoneViewports();
|
||||
}
|
||||
},
|
||||
};
|
||||
|
||||
|
||||
@@ -0,0 +1,69 @@
|
||||
.imageViewerViewport.empty ~ .OHIFCornerstoneViewportOverlay {
|
||||
display: none;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay {
|
||||
color: #9ccef9;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .overlay-element {
|
||||
position: absolute;
|
||||
font-weight: 400;
|
||||
text-shadow: 1px 1px #000;
|
||||
pointer-events: none;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .top-left {
|
||||
top: 20px;
|
||||
left: 20px;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .top-center {
|
||||
top: 20px;
|
||||
padding-top: 20px;
|
||||
width: 100%;
|
||||
text-align: center;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .top-right {
|
||||
top: 20px;
|
||||
right: 20px;
|
||||
text-align: right;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .bottom-left {
|
||||
bottom: 20px;
|
||||
left: 20px;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .bottom-left2 {
|
||||
bottom: 140px;
|
||||
left: 20px;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .bottom-right {
|
||||
bottom: 20px;
|
||||
right: 20px;
|
||||
text-align: right;
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay.controlsVisible .topright,
|
||||
.OHIFCornerstoneViewportOverlay.controlsVisible .bottomright {
|
||||
right: calc(20px + 19px);
|
||||
}
|
||||
.OHIFCornerstoneViewportOverlay .warning {
|
||||
position: absolute;
|
||||
font-weight: 400;
|
||||
text-shadow: 1px 1px #000;
|
||||
pointer-events: inherit;
|
||||
}
|
||||
|
||||
.OHIFCornerstoneViewportOverlay .warning svg {
|
||||
opacity: 1;
|
||||
color: #e29e4a;
|
||||
fill: #e29e4a;
|
||||
stroke: #e29e4a;
|
||||
width: 32px;
|
||||
height: 28px;
|
||||
}
|
||||
|
||||
.OHIFCornerstoneViewportOverlay svg {
|
||||
color: #9ccef9;
|
||||
fill: #9ccef9;
|
||||
stroke: #9ccef9;
|
||||
background-color: transparent;
|
||||
margin: 2px;
|
||||
width: 18px;
|
||||
height: 18px;
|
||||
}
|
||||
@@ -0,0 +1,167 @@
|
||||
import { PureComponent } from 'react';
|
||||
import React from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import './OHIFCornerstoneViewportOverlay.css';
|
||||
import {
|
||||
isValidNumber,
|
||||
formatNumberPrecision,
|
||||
formatDICOMDate,
|
||||
formatDICOMTime,
|
||||
formatPN,
|
||||
getCompression
|
||||
} from '../utils/formatStudy';
|
||||
import classNames from 'classnames';
|
||||
import { Icon } from '@ohif/ui/src/elements/Icon';
|
||||
import { Tooltip } from '@ohif/ui/src/components/tooltip';
|
||||
import { OverlayTrigger } from '@ohif/ui/src/components/overlayTrigger';
|
||||
|
||||
class OHIFCornerstoneViewportOverlay extends PureComponent {
|
||||
static propTypes = {
|
||||
scale: PropTypes.number.isRequired,
|
||||
windowWidth: PropTypes.oneOfType([
|
||||
PropTypes.number.isRequired,
|
||||
PropTypes.string.isRequired,
|
||||
]),
|
||||
windowCenter: PropTypes.oneOfType([
|
||||
PropTypes.number.isRequired,
|
||||
PropTypes.string.isRequired,
|
||||
]),
|
||||
imageId: PropTypes.string.isRequired,
|
||||
imageIndex: PropTypes.number.isRequired,
|
||||
stackSize: PropTypes.number.isRequired,
|
||||
inconsistencyWarnings: PropTypes.array.isRequired
|
||||
};
|
||||
|
||||
render() {
|
||||
const { imageId, scale, windowWidth, windowCenter, inconsistencyWarnings } = this.props;
|
||||
|
||||
if (!imageId) {
|
||||
return null;
|
||||
}
|
||||
|
||||
const zoomPercentage = formatNumberPrecision(scale * 100, 0);
|
||||
const seriesMetadata =
|
||||
cornerstone.metaData.get('generalSeriesModule', imageId) || {};
|
||||
const imagePlaneModule =
|
||||
cornerstone.metaData.get('imagePlaneModule', imageId) || {};
|
||||
const { rows, columns, sliceThickness, sliceLocation } = imagePlaneModule;
|
||||
const { seriesNumber, seriesDescription } = seriesMetadata;
|
||||
|
||||
const generalStudyModule =
|
||||
cornerstone.metaData.get('generalStudyModule', imageId) || {};
|
||||
const { studyDate, studyTime, studyDescription } = generalStudyModule;
|
||||
|
||||
const patientModule =
|
||||
cornerstone.metaData.get('patientModule', imageId) || {};
|
||||
const { patientId, patientName } = patientModule;
|
||||
|
||||
const generalImageModule =
|
||||
cornerstone.metaData.get('generalImageModule', imageId) || {};
|
||||
const { instanceNumber } = generalImageModule;
|
||||
|
||||
const cineModule = cornerstone.metaData.get('cineModule', imageId) || {};
|
||||
const { frameTime } = cineModule;
|
||||
|
||||
const frameRate = formatNumberPrecision(1000 / frameTime, 1);
|
||||
const compression = getCompression(imageId);
|
||||
const wwwc = `W: ${
|
||||
windowWidth.toFixed ? windowWidth.toFixed(0) : windowWidth
|
||||
} L: ${windowWidth.toFixed ? windowCenter.toFixed(0) : windowCenter}`;
|
||||
const imageDimensions = `${columns} x ${rows}`;
|
||||
|
||||
const { imageIndex, stackSize } = this.props;
|
||||
|
||||
const inconsistencyWarningsOn = inconsistencyWarnings && inconsistencyWarnings.length !== 0 ? true : false;
|
||||
const getWarningContent = (warningList) => {
|
||||
if (Array.isArray(warningList)) {
|
||||
const listedWarnings = warningList.map((warn, index) => {
|
||||
return <li key={index}>{warn}</li>;
|
||||
});
|
||||
|
||||
return <ol>{listedWarnings}</ol>;
|
||||
} else {
|
||||
return <React.Fragment>{warningList}</React.Fragment>;
|
||||
}
|
||||
};
|
||||
|
||||
const getWarningInfo = (seriesNumber, inconsistencyWarnings) => {
|
||||
return(
|
||||
<React.Fragment>
|
||||
{inconsistencyWarnings.length != 0 ? (
|
||||
<OverlayTrigger
|
||||
key={seriesNumber}
|
||||
placement="left"
|
||||
overlay={
|
||||
<Tooltip
|
||||
placement="left"
|
||||
className="in tooltip-warning"
|
||||
id="tooltip-left"
|
||||
>
|
||||
<div className="warningTitle">Series Inconsistencies</div>
|
||||
<div className="warningContent">{getWarningContent(inconsistencyWarnings)}</div>
|
||||
</Tooltip>
|
||||
}
|
||||
>
|
||||
<div className={classNames('warning')}>
|
||||
<span className="warning-icon">
|
||||
<Icon name="exclamation-triangle" />
|
||||
</span>
|
||||
</div>
|
||||
</OverlayTrigger>
|
||||
) : (
|
||||
<React.Fragment></React.Fragment>
|
||||
)}
|
||||
</React.Fragment>
|
||||
);
|
||||
};
|
||||
|
||||
const normal = (
|
||||
<React.Fragment>
|
||||
<div className="top-left overlay-element">
|
||||
<div>{formatPN(patientName)}</div>
|
||||
<div>{patientId}</div>
|
||||
</div>
|
||||
<div className="top-right overlay-element">
|
||||
<div>{studyDescription}</div>
|
||||
<div>
|
||||
{formatDICOMDate(studyDate)} {formatDICOMTime(studyTime)}
|
||||
</div>
|
||||
</div>
|
||||
<div className="bottom-right overlay-element">
|
||||
<div>Zoom: {zoomPercentage}%</div>
|
||||
<div>{wwwc}</div>
|
||||
<div className="compressionIndicator">{compression}</div>
|
||||
</div>
|
||||
<div className="bottom-left2 warning">
|
||||
<div>{inconsistencyWarningsOn ? getWarningInfo(seriesNumber, inconsistencyWarnings) : ''}</div>
|
||||
</div>
|
||||
<div className="bottom-left overlay-element">
|
||||
<div>{seriesNumber >= 0 ? `Ser: ${seriesNumber}` : ''}</div>
|
||||
<div>
|
||||
{stackSize > 1
|
||||
? `Img: ${instanceNumber} ${imageIndex}/${stackSize}`
|
||||
: ''}
|
||||
</div>
|
||||
<div>
|
||||
{frameRate >= 0 ? `${formatNumberPrecision(frameRate, 2)} FPS` : ''}
|
||||
<div>{imageDimensions}</div>
|
||||
<div>
|
||||
{isValidNumber(sliceLocation)
|
||||
? `Loc: ${formatNumberPrecision(sliceLocation, 2)} mm `
|
||||
: ''}
|
||||
{sliceThickness
|
||||
? `Thick: ${formatNumberPrecision(sliceThickness, 2)} mm`
|
||||
: ''}
|
||||
</div>
|
||||
<div>{seriesDescription}</div>
|
||||
</div>
|
||||
</div>
|
||||
</React.Fragment>
|
||||
);
|
||||
|
||||
return <div className="OHIFCornerstoneViewportOverlay">{normal}</div>;
|
||||
}
|
||||
}
|
||||
|
||||
export default OHIFCornerstoneViewportOverlay;
|
||||
@@ -38,7 +38,14 @@ export default {
|
||||
},
|
||||
getViewportModule({ commandsManager }) {
|
||||
const ExtendedOHIFCornerstoneViewport = props => {
|
||||
/**
|
||||
* TODO: This appears to be used to set the redux parameters for
|
||||
* the viewport when new images are loaded. It's very ugly
|
||||
* and we should remove it.
|
||||
*/
|
||||
const onNewImageHandler = jumpData => {
|
||||
/** Do not trigger all viewports to render unnecessarily */
|
||||
jumpData.refreshViewports = false;
|
||||
commandsManager.runCommand('jumpToImage', jumpData);
|
||||
};
|
||||
return (
|
||||
|
||||
@@ -0,0 +1,109 @@
|
||||
import moment from 'moment';
|
||||
|
||||
/**
|
||||
* Checks if value is valid.
|
||||
*
|
||||
* @param {number} value
|
||||
* @returns {boolean} is valid.
|
||||
*/
|
||||
function isValidNumber(value) {
|
||||
return typeof value === 'number' && !isNaN(value);
|
||||
}
|
||||
|
||||
/**
|
||||
* Formats number precision.
|
||||
*
|
||||
* @param {number} number
|
||||
* @param {number} precision
|
||||
* @returns {number} formatted number.
|
||||
*/
|
||||
function formatNumberPrecision(number, precision) {
|
||||
if (number !== null) {
|
||||
return parseFloat(number).toFixed(precision);
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Formats DICOM date.
|
||||
*
|
||||
* @param {string} date
|
||||
* @param {string} strFormat
|
||||
* @returns {string} formatted date.
|
||||
*/
|
||||
function formatDICOMDate(date, strFormat = 'MMM D, YYYY') {
|
||||
return moment(date, 'YYYYMMDD').format(strFormat);
|
||||
}
|
||||
|
||||
/**
|
||||
* DICOM Time is stored as HHmmss.SSS, where:
|
||||
* HH 24 hour time:
|
||||
* m mm 0..59 Minutes
|
||||
* s ss 0..59 Seconds
|
||||
* S SS SSS 0..999 Fractional seconds
|
||||
*
|
||||
* Goal: '24:12:12'
|
||||
*
|
||||
* @param {*} time
|
||||
* @param {string} strFormat
|
||||
* @returns {string} formatted name.
|
||||
*/
|
||||
function formatDICOMTime(time, strFormat = 'HH:mm:ss') {
|
||||
return moment(time, 'HH:mm:ss').format(strFormat);
|
||||
}
|
||||
|
||||
/**
|
||||
* Formats a patient name for display purposes
|
||||
*
|
||||
* @param {string} name
|
||||
* @returns {string} formatted name.
|
||||
*/
|
||||
function formatPN(name) {
|
||||
if (!name) {
|
||||
return;
|
||||
}
|
||||
|
||||
// Convert the first ^ to a ', '. String.replace() only affects
|
||||
// the first appearance of the character.
|
||||
const commaBetweenFirstAndLast = name.replace('^', ', ');
|
||||
|
||||
// Replace any remaining '^' characters with spaces
|
||||
const cleaned = commaBetweenFirstAndLast.replace(/\^/g, ' ');
|
||||
|
||||
// Trim any extraneous whitespace
|
||||
return cleaned.trim();
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets compression type
|
||||
*
|
||||
* @param {number} imageId
|
||||
* @returns {string} comrpession type.
|
||||
*/
|
||||
function getCompression(imageId) {
|
||||
const generalImageModule =
|
||||
cornerstone.metaData.get('generalImageModule', imageId) || {};
|
||||
const {
|
||||
lossyImageCompression,
|
||||
lossyImageCompressionRatio,
|
||||
lossyImageCompressionMethod,
|
||||
} = generalImageModule;
|
||||
|
||||
if (lossyImageCompression === '01' && lossyImageCompressionRatio !== '') {
|
||||
const compressionMethod = lossyImageCompressionMethod || 'Lossy: ';
|
||||
const compressionRatio = formatNumberPrecision(
|
||||
lossyImageCompressionRatio,
|
||||
2
|
||||
);
|
||||
return compressionMethod + compressionRatio + ' : 1';
|
||||
}
|
||||
|
||||
return 'Lossless / Uncompressed';
|
||||
}
|
||||
|
||||
export { isValidNumber,
|
||||
formatNumberPrecision,
|
||||
formatDICOMDate,
|
||||
formatDICOMTime,
|
||||
formatPN,
|
||||
getCompression
|
||||
};
|
||||
@@ -3,6 +3,33 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.2.1...@ohif/extension-debugging@0.2.2) (2021-06-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-debugging
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.2.0...@ohif/extension-debugging@0.2.1) (2021-03-19)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-debugging
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.2.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.1.6...@ohif/extension-debugging@0.2.0) (2021-03-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **log:** add new log service ([14d6454](https://github.com/OHIF/Viewers/commit/14d6454eafaa2ccb50e133c2945c9558052ea27e))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.1.5...@ohif/extension-debugging@0.1.6) (2020-10-06)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-debugging
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-debugging",
|
||||
"version": "0.1.6",
|
||||
"version": "0.2.2",
|
||||
"description": "OHIF extension for debugging.",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -28,13 +28,12 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^2.6.0",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"dicomweb-client": "^0.5.2"
|
||||
"dicom-parser": "^1.8.3"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"detect-browser": "5.1.1",
|
||||
"dicomweb-client": "^0.6.0",
|
||||
"dicomweb-client": "^0.8.1",
|
||||
"file-saver": "^2.0.2",
|
||||
"jszip": "^3.2.2"
|
||||
}
|
||||
|
||||
@@ -12,3 +12,15 @@
|
||||
display: flex;
|
||||
flex-direction: row;
|
||||
}
|
||||
|
||||
.debug-report-modal-container .errors {
|
||||
margin-top: 10px;
|
||||
}
|
||||
|
||||
.debug-report-modal-container .errors-container {
|
||||
border: 1px solid var(--active-color);
|
||||
border-radius: 5px;
|
||||
padding: 10px;
|
||||
overflow: scroll;
|
||||
max-height: 300px;
|
||||
}
|
||||
@@ -10,6 +10,7 @@ const DubugReportModal = ({
|
||||
extensionManager,
|
||||
mailTo,
|
||||
debugModalMessage,
|
||||
errors = [],
|
||||
}) => {
|
||||
const copyDebugDataToClipboard = () => {
|
||||
const body = getEmailBody();
|
||||
@@ -131,6 +132,19 @@ const DubugReportModal = ({
|
||||
{getLayout(viewports)}
|
||||
</table>
|
||||
</div>
|
||||
<div className="errors">
|
||||
<h3>Errors ({errors.length})</h3>
|
||||
<div className="errors-container">
|
||||
{errors.map(error => {
|
||||
return (
|
||||
<div>
|
||||
<pre>Message: {error.message}</pre>
|
||||
{error.error && <pre>Stack: {error.error.stack}</pre>}
|
||||
</div>
|
||||
);
|
||||
})}
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
@@ -1,4 +1,6 @@
|
||||
import OHIF from '@ohif/core';
|
||||
import { useLogger } from '@ohif/ui';
|
||||
|
||||
import {
|
||||
save,
|
||||
upload,
|
||||
@@ -95,6 +97,7 @@ export function getCommands(context, servicesManager, extensionManager) {
|
||||
const { UIModalService } = servicesManager.services;
|
||||
|
||||
const WrappedDebugReportModal = function() {
|
||||
const { state: loggerState } = useLogger();
|
||||
return (
|
||||
<DebugReportModal
|
||||
viewports={viewports}
|
||||
@@ -103,6 +106,7 @@ export function getCommands(context, servicesManager, extensionManager) {
|
||||
extensionManager={extensionManager}
|
||||
mailTo={state.mailTo}
|
||||
debugModalMessage={state.debugModalMessage}
|
||||
errors={loggerState.errors}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
@@ -1,3 +1,3 @@
|
||||
const state = { mailTo: undefined, message: undefined };
|
||||
const state = { mailTo: undefined, debugModalMessage: undefined };
|
||||
|
||||
export default state;
|
||||
@@ -3,6 +3,81 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.3.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.9...@ohif/extension-dicom-html@1.3.10) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.8...@ohif/extension-dicom-html@1.3.9) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.7...@ohif/extension-dicom-html@1.3.8) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.6...@ohif/extension-dicom-html@1.3.7) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.5...@ohif/extension-dicom-html@1.3.6) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.4...@ohif/extension-dicom-html@1.3.5) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.3...@ohif/extension-dicom-html@1.3.4) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.2...@ohif/extension-dicom-html@1.3.3) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.1...@ohif/extension-dicom-html@1.3.2) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.3.0...@ohif/extension-dicom-html@1.3.1) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-html",
|
||||
"version": "1.3.1",
|
||||
"version": "1.3.10",
|
||||
"description": "OHIF extension for rendering structured reports to HTML",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -29,7 +29,7 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"dcmjs": "0.17.2",
|
||||
"dcmjs": "0.18.8",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
|
||||
@@ -168,6 +168,16 @@ const getContentSequence = (data, level = 1) => {
|
||||
Object.keys(data).forEach(key => {
|
||||
const value = data[key];
|
||||
|
||||
if (key === '_meta') {
|
||||
const HeaderDynamicLevel = `h3`;
|
||||
root.push(<hr />);
|
||||
root.push(
|
||||
<HeaderDynamicLevel key="Metadata">
|
||||
DICOM File Meta Information
|
||||
</HeaderDynamicLevel>
|
||||
);
|
||||
}
|
||||
|
||||
let content;
|
||||
if (value instanceof Object) {
|
||||
content = getContentSequence(value, level + 1);
|
||||
@@ -215,6 +225,7 @@ class DicomHtmlViewport extends Component {
|
||||
const dicomData = DicomMessage.readFile(arrayBuffer);
|
||||
const dataset = DicomMetaDictionary.naturalizeDataset(dicomData.dict);
|
||||
dataset._meta = DicomMetaDictionary.namifyDataset(dicomData.meta);
|
||||
dataset._meta = DicomMetaDictionary.naturalizeDataset(dataset._meta);
|
||||
|
||||
const mainData = getMainData(dataset);
|
||||
const contentSequence = getContentSequence(dataset);
|
||||
|
||||
@@ -9,6 +9,7 @@ const SOP_CLASS_UIDS = {
|
||||
MAMMOGRAPHY_CAD_SR: '1.2.840.10008.5.1.4.1.1.88.50',
|
||||
CHEST_CAD_SR: '1.2.840.10008.5.1.4.1.1.88.65',
|
||||
X_RAY_RADIATION_DOSE_SR: '1.2.840.10008.5.1.4.1.1.88.67',
|
||||
ACQUISITION_CONTEXT_SR_STORAGE: '1.2.840.10008.5.1.4.1.1.88.71',
|
||||
};
|
||||
|
||||
const sopClassUIDs = Object.values(SOP_CLASS_UIDS);
|
||||
|
||||
@@ -3,6 +3,17 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
# [0.52.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.51.4...@ohif/extension-dicom-microscopy@0.52.0) (2021-03-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **log:** add new log service ([14d6454](https://github.com/OHIF/Viewers/commit/14d6454eafaa2ccb50e133c2945c9558052ea27e))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.51.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.51.3...@ohif/extension-dicom-microscopy@0.51.4) (2021-01-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-microscopy",
|
||||
"version": "0.51.4",
|
||||
"version": "0.52.0",
|
||||
"description": "OHIF extension for Dicom Microscopy",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -70,12 +70,18 @@ class DicomMicroscopyViewport extends Component {
|
||||
});
|
||||
} catch (error) {
|
||||
console.error('[Microscopy Viewer] Failed to load:', error);
|
||||
const { UINotificationService } = this.props.servicesManager.services;
|
||||
const {
|
||||
UINotificationService,
|
||||
LoggerService,
|
||||
} = this.props.servicesManager.services;
|
||||
if (UINotificationService) {
|
||||
const message =
|
||||
'Failed to load viewport. Please check that you have hardware acceleration enabled.';
|
||||
LoggerService.error({ error, message });
|
||||
UINotificationService.show({
|
||||
autoClose: false,
|
||||
title: 'Microscopy Viewport',
|
||||
message:
|
||||
'Failed to load viewport. Please check that you have hardware acceleration enabled.',
|
||||
message,
|
||||
type: 'error',
|
||||
});
|
||||
}
|
||||
|
||||
@@ -3,6 +3,81 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.6.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.12...@ohif/extension-dicom-rt@0.6.13) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.11...@ohif/extension-dicom-rt@0.6.12) (2021-05-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.10...@ohif/extension-dicom-rt@0.6.11) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.9...@ohif/extension-dicom-rt@0.6.10) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.8...@ohif/extension-dicom-rt@0.6.9) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.7...@ohif/extension-dicom-rt@0.6.8) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.6...@ohif/extension-dicom-rt@0.6.7) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.5...@ohif/extension-dicom-rt@0.6.6) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.4...@ohif/extension-dicom-rt@0.6.5) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.6.3...@ohif/extension-dicom-rt@0.6.4) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-rt",
|
||||
"version": "0.6.4",
|
||||
"version": "0.6.13",
|
||||
"description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -31,7 +31,7 @@
|
||||
"@ohif/core": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"dcmjs": "0.17.2",
|
||||
"dcmjs": "0.18.8",
|
||||
"gl-matrix": "^3.3.0",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
|
||||
@@ -71,8 +71,8 @@ const OHIFDicomRTStructSopClassHandler = {
|
||||
}
|
||||
}
|
||||
|
||||
rtStructDisplaySet.getSourceDisplaySet = function (studies) {
|
||||
return getSourceDisplaySet(studies, rtStructDisplaySet);
|
||||
rtStructDisplaySet.getSourceDisplaySet = function (studies, activateLabelMap = true) {
|
||||
return getSourceDisplaySet(studies, rtStructDisplaySet, activateLabelMap);
|
||||
};
|
||||
|
||||
rtStructDisplaySet.load = function (referencedDisplaySet, studies) {
|
||||
|
||||
@@ -1,38 +1,14 @@
|
||||
export default function getSourceDisplaySet(studies, rtStructDisplaySet) {
|
||||
const referencedDisplaySet = _getReferencedDisplaySet(
|
||||
import { metadata } from '@ohif/core';
|
||||
|
||||
export default function getSourceDisplaySet(studies, rtStructDisplaySet, activateLabelMap = true) {
|
||||
const referencedDisplaySet = metadata.StudyMetadata.getReferencedDisplaySet(
|
||||
rtStructDisplaySet,
|
||||
studies
|
||||
);
|
||||
|
||||
rtStructDisplaySet.load(referencedDisplaySet, studies);
|
||||
if (activateLabelMap) {
|
||||
rtStructDisplaySet.load(referencedDisplaySet, studies);
|
||||
}
|
||||
|
||||
return referencedDisplaySet;
|
||||
}
|
||||
|
||||
const _getReferencedDisplaySet = (rtStructDisplaySet, studies) => {
|
||||
let allDisplaySets = [];
|
||||
|
||||
studies.forEach(study => {
|
||||
allDisplaySets = allDisplaySets.concat(study.displaySets);
|
||||
});
|
||||
|
||||
const otherDisplaySets = allDisplaySets.filter(
|
||||
ds => ds.displaySetInstanceUID !== rtStructDisplaySet.displaySetInstanceUID
|
||||
);
|
||||
|
||||
const ReferencedSeriesSequence = Array.isArray(
|
||||
rtStructDisplaySet.metadata.ReferencedSeriesSequence
|
||||
)
|
||||
? rtStructDisplaySet.metadata.ReferencedSeriesSequence
|
||||
: [rtStructDisplaySet.metadata.ReferencedSeriesSequence];
|
||||
|
||||
const referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
|
||||
ReferencedSeries => ReferencedSeries.SeriesInstanceUID
|
||||
);
|
||||
|
||||
const referencedDisplaySet = otherDisplaySets.find(ds =>
|
||||
referencedSeriesInstanceUIDs.includes(ds.SeriesInstanceUID)
|
||||
);
|
||||
|
||||
return referencedDisplaySet;
|
||||
};
|
||||
@@ -3,6 +3,116 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.6.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.9...@ohif/extension-dicom-segmentation@0.6.10) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.8...@ohif/extension-dicom-segmentation@0.6.9) (2021-05-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.7...@ohif/extension-dicom-segmentation@0.6.8) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.6...@ohif/extension-dicom-segmentation@0.6.7) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.5...@ohif/extension-dicom-segmentation@0.6.6) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.4...@ohif/extension-dicom-segmentation@0.6.5) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.3...@ohif/extension-dicom-segmentation@0.6.4) (2021-04-16)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.2...@ohif/extension-dicom-segmentation@0.6.3) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.1...@ohif/extension-dicom-segmentation@0.6.2) (2021-03-31)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.6.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.6.0...@ohif/extension-dicom-segmentation@0.6.1) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.6.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.5.4...@ohif/extension-dicom-segmentation@0.6.0) (2021-03-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **log:** add new log service ([14d6454](https://github.com/OHIF/Viewers/commit/14d6454eafaa2ccb50e133c2945c9558052ea27e))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.5.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.5.3...@ohif/extension-dicom-segmentation@0.5.4) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.5.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.5.2...@ohif/extension-dicom-segmentation@0.5.3) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.5.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.5.1...@ohif/extension-dicom-segmentation@0.5.2) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-segmentation",
|
||||
"version": "0.5.2",
|
||||
"version": "0.6.10",
|
||||
"description": "OHIF extension for viewing segmentations in the 2D MPR view",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -31,7 +31,7 @@
|
||||
"@ohif/core": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"dcmjs": "0.17.2",
|
||||
"dcmjs": "0.18.8",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
|
||||
+38
-4
@@ -155,7 +155,9 @@ const SegmentationPanel = ({
|
||||
|
||||
const brushStackState = getBrushStackState();
|
||||
brushStackState.activeLabelmapIndex = newLabelmapIndex;
|
||||
setState(state => ({ ...state, selectedSegmentation }));
|
||||
if (selectedSegmentation) {
|
||||
setState(state => ({ ...state, selectedSegmentation }));
|
||||
}
|
||||
|
||||
refreshViewports();
|
||||
|
||||
@@ -189,6 +191,10 @@ const SegmentationPanel = ({
|
||||
'extensiondicomsegmentationsegloaded',
|
||||
refreshSegmentations
|
||||
);
|
||||
document.addEventListener(
|
||||
'extensiondicomsegmentationsegselected',
|
||||
updateSegmentationComboBox
|
||||
);
|
||||
|
||||
/*
|
||||
* These are specific to each element;
|
||||
@@ -207,6 +213,10 @@ const SegmentationPanel = ({
|
||||
'extensiondicomsegmentationsegloaded',
|
||||
refreshSegmentations
|
||||
);
|
||||
document.removeEventListener(
|
||||
'extensiondicomsegmentationsegselected',
|
||||
updateSegmentationComboBox
|
||||
);
|
||||
cornerstoneTools.store.state.enabledElements.forEach(enabledElement =>
|
||||
enabledElement.removeEventListener(
|
||||
'cornerstonetoolslabelmapmodified',
|
||||
@@ -216,6 +226,27 @@ const SegmentationPanel = ({
|
||||
};
|
||||
}, [activeIndex, viewports]);
|
||||
|
||||
const updateSegmentationComboBox = (e) => {
|
||||
const index = e.detail.activatedLabelmapIndex;
|
||||
if (index !== -1) {
|
||||
setState(state => ({ ...state, selectedSegmentation: index }));
|
||||
} else {
|
||||
cleanSegmentationComboBox();
|
||||
}
|
||||
}
|
||||
|
||||
const cleanSegmentationComboBox = () => {
|
||||
setState(state => ({
|
||||
...state,
|
||||
segmentsHidden: [],
|
||||
segmentNumbers: [],
|
||||
labelMapList: [],
|
||||
segmentList: [],
|
||||
isDisabled: true,
|
||||
selectedSegmentation: -1,
|
||||
}));
|
||||
}
|
||||
|
||||
const refreshSegmentations = () => {
|
||||
const activeViewport = getActiveViewport();
|
||||
const isDisabled = !activeViewport || !activeViewport.StudyInstanceUID;
|
||||
@@ -277,7 +308,10 @@ const SegmentationPanel = ({
|
||||
activeViewport.SeriesInstanceUID
|
||||
);
|
||||
|
||||
return referencedSegDisplaysets.map((displaySet, index) => {
|
||||
const filteredReferencedSegDisplaysets = referencedSegDisplaysets.filter(
|
||||
(segDisplay => segDisplay.loadError !== true));
|
||||
|
||||
return filteredReferencedSegDisplaysets.map((displaySet, index) => {
|
||||
const {
|
||||
labelmapIndex,
|
||||
originLabelMapIndex,
|
||||
@@ -289,7 +323,7 @@ const SegmentationPanel = ({
|
||||
/* Map to display representation */
|
||||
const dateStr = `${SeriesDate}:${SeriesTime}`.split('.')[0];
|
||||
const date = moment(dateStr, 'YYYYMMDD:HHmmss');
|
||||
const displayDate = date.format('ddd, MMM Do YYYY');
|
||||
const displayDate = date.format('ddd, MMM Do YYYY, h:mm:ss a');
|
||||
const displayDescription = displaySet.SeriesDescription;
|
||||
|
||||
return {
|
||||
@@ -709,7 +743,7 @@ const _getReferencedSegDisplaysets = (StudyInstanceUID, SeriesInstanceUID) => {
|
||||
referencedDisplaysets.sort((a, b) => {
|
||||
const aNumber = Number(`${a.SeriesDate}${a.SeriesTime}`);
|
||||
const bNumber = Number(`${b.SeriesDate}${b.SeriesTime}`);
|
||||
return aNumber - bNumber;
|
||||
return bNumber - aNumber;
|
||||
});
|
||||
|
||||
return referencedDisplaysets;
|
||||
|
||||
@@ -3,7 +3,7 @@ import Select from 'react-select';
|
||||
|
||||
const SegmentationSelect = ({ value, formatOptionLabel, options }) => (
|
||||
<Select
|
||||
value={value}
|
||||
value={value === undefined ? null : value}
|
||||
formatOptionLabel={formatOptionLabel}
|
||||
styles={segmentationSelectStyles}
|
||||
options={options}
|
||||
|
||||
@@ -55,6 +55,7 @@ export default function getSopClassHandlerModule({ servicesManager }) {
|
||||
referencedDisplaySetUID: null, // Assigned when loaded.
|
||||
labelmapIndex: null, // Assigned when loaded.
|
||||
isLoaded: false,
|
||||
loadError: false,
|
||||
hasOverlapping: false,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
@@ -63,8 +64,8 @@ export default function getSopClassHandlerModule({ servicesManager }) {
|
||||
metadata,
|
||||
};
|
||||
|
||||
segDisplaySet.getSourceDisplaySet = function(studies) {
|
||||
return getSourceDisplaySet(studies, segDisplaySet);
|
||||
segDisplaySet.getSourceDisplaySet = function(studies, activateLabelMap = true, onDisplaySetLoadFailureHandler) {
|
||||
return getSourceDisplaySet(studies, segDisplaySet, activateLabelMap, onDisplaySetLoadFailureHandler);
|
||||
};
|
||||
|
||||
segDisplaySet.load = async function(referencedDisplaySet, studies) {
|
||||
@@ -82,57 +83,50 @@ export default function getSopClassHandlerModule({ servicesManager }) {
|
||||
StudyInstanceUID,
|
||||
referencedDisplaySet.SeriesInstanceUID
|
||||
);
|
||||
return new Promise(async (resolve, reject) => {
|
||||
let results;
|
||||
try {
|
||||
results = _parseSeg(segArrayBuffer, imageIds);
|
||||
} catch (error) {
|
||||
segDisplaySet.isLoaded = false;
|
||||
segDisplaySet.loadError = true;
|
||||
reject(error);
|
||||
}
|
||||
const {
|
||||
labelmapBufferArray,
|
||||
segMetadata,
|
||||
segmentsOnFrame,
|
||||
segmentsOnFrameArray,
|
||||
} = results;
|
||||
|
||||
let labelmapIndex;
|
||||
if (labelmapBufferArray.length > 1) {
|
||||
let labelmapIndexes = [];
|
||||
for (let i = 0; i < labelmapBufferArray.length; ++i) {
|
||||
labelmapIndexes.push(
|
||||
await loadSegmentation(
|
||||
imageIds,
|
||||
segDisplaySet,
|
||||
labelmapBufferArray[i],
|
||||
segMetadata,
|
||||
segmentsOnFrame,
|
||||
segmentsOnFrameArray[i]
|
||||
)
|
||||
);
|
||||
}
|
||||
/**
|
||||
* Since overlapping segmentations have virtual labelmaps,
|
||||
* originLabelMapIndex is used in the panel to select the correct dropdown value.
|
||||
*/
|
||||
segDisplaySet.hasOverlapping = true;
|
||||
segDisplaySet.originLabelMapIndex = labelmapIndexes[0];
|
||||
labelmapIndex = labelmapIndexes[0];
|
||||
console.warn('Overlapping segmentations!');
|
||||
} else {
|
||||
labelmapIndex = await loadSegmentation(
|
||||
imageIds,
|
||||
segDisplaySet,
|
||||
labelmapBufferArray[0],
|
||||
segMetadata,
|
||||
segmentsOnFrame,
|
||||
[]
|
||||
const results = await _parseSeg(segArrayBuffer, imageIds);
|
||||
if (results === undefined) {
|
||||
return;
|
||||
}
|
||||
const {
|
||||
labelmapBufferArray,
|
||||
segMetadata,
|
||||
segmentsOnFrame,
|
||||
segmentsOnFrameArray,
|
||||
} = results;
|
||||
let labelmapIndex;
|
||||
if (labelmapBufferArray.length > 1) {
|
||||
let labelmapIndexes = [];
|
||||
for (let i = 0; i < labelmapBufferArray.length; ++i) {
|
||||
labelmapIndexes.push(
|
||||
await loadSegmentation(
|
||||
imageIds,
|
||||
segDisplaySet,
|
||||
labelmapBufferArray[i],
|
||||
segMetadata,
|
||||
segmentsOnFrame,
|
||||
segmentsOnFrameArray[i]
|
||||
)
|
||||
);
|
||||
}
|
||||
resolve(labelmapIndex);
|
||||
});
|
||||
/**
|
||||
* Since overlapping segments have virtual labelmaps,
|
||||
* originLabelMapIndex is used in the panel to select the correct dropdown value.
|
||||
*/
|
||||
segDisplaySet.hasOverlapping = true;
|
||||
segDisplaySet.originLabelMapIndex = labelmapIndexes[0];
|
||||
labelmapIndex = labelmapIndexes[0];
|
||||
console.warn('Overlapping segments!');
|
||||
} else {
|
||||
labelmapIndex = await loadSegmentation(
|
||||
imageIds,
|
||||
segDisplaySet,
|
||||
labelmapBufferArray[0],
|
||||
segMetadata,
|
||||
segmentsOnFrame,
|
||||
[]
|
||||
);
|
||||
}
|
||||
};
|
||||
|
||||
return segDisplaySet;
|
||||
|
||||
@@ -1,88 +1,16 @@
|
||||
import setActiveLabelmap from './utils/setActiveLabelMap';
|
||||
import { classes } from '@ohif/core';
|
||||
import { metadata } from '@ohif/core';
|
||||
|
||||
const { ImageSet } = classes;
|
||||
export default function getSourceDisplaySet(studies, segDisplaySet, activateLabelMap = true, onDisplaySetLoadFailureHandler) {
|
||||
const referencedDisplaySet = metadata.StudyMetadata.getReferencedDisplaySet(segDisplaySet, studies);
|
||||
|
||||
export default function getSourceDisplaySet(studies, segDisplaySet) {
|
||||
const referencedDisplaySet = _getReferencedDisplaySet(segDisplaySet, studies);
|
||||
|
||||
setActiveLabelmap(referencedDisplaySet, studies, segDisplaySet);
|
||||
|
||||
return referencedDisplaySet;
|
||||
}
|
||||
|
||||
const _getReferencedDisplaySet = (segDisplaySet, studies) => {
|
||||
let allDisplaySets = [];
|
||||
|
||||
studies.forEach(study => {
|
||||
allDisplaySets = allDisplaySets.concat(study.displaySets);
|
||||
});
|
||||
|
||||
const otherDisplaySets = allDisplaySets.filter(
|
||||
ds => ds.displaySetInstanceUID !== segDisplaySet.displaySetInstanceUID
|
||||
);
|
||||
|
||||
const { metadata } = segDisplaySet;
|
||||
|
||||
let referencedSeriesInstanceUIDs;
|
||||
|
||||
if (metadata.ReferencedSeriesSequence) {
|
||||
const ReferencedSeriesSequence = _toArray(
|
||||
metadata.ReferencedSeriesSequence
|
||||
);
|
||||
|
||||
referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
|
||||
ReferencedSeries => ReferencedSeries.SeriesInstanceUID
|
||||
);
|
||||
} else {
|
||||
const { PerFrameFunctionalGroupsSequence } = metadata;
|
||||
|
||||
let SourceImageSequence;
|
||||
|
||||
if (metadata.SourceImageSequence) {
|
||||
SourceImageSequence = metadata.SourceImageSequence;
|
||||
} else {
|
||||
const firstFunctionalGroups = _toArray(
|
||||
PerFrameFunctionalGroupsSequence
|
||||
)[0];
|
||||
const { DerivationImageSequence } = firstFunctionalGroups;
|
||||
|
||||
SourceImageSequence = DerivationImageSequence;
|
||||
}
|
||||
|
||||
const firstSourceImage = _toArray(SourceImageSequence)[0];
|
||||
|
||||
const { ReferencedSOPInstanceUID } = firstSourceImage;
|
||||
|
||||
referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromSOPInstanceUID(
|
||||
otherDisplaySets,
|
||||
ReferencedSOPInstanceUID
|
||||
);
|
||||
let activatedLabelmapPromise;
|
||||
if (activateLabelMap) {
|
||||
activatedLabelmapPromise = setActiveLabelmap(referencedDisplaySet, studies, segDisplaySet, undefined, onDisplaySetLoadFailureHandler);
|
||||
}
|
||||
|
||||
const referencedDisplaySet = otherDisplaySets.find(ds =>
|
||||
referencedSeriesInstanceUIDs.includes(ds.SeriesInstanceUID)
|
||||
);
|
||||
|
||||
return referencedDisplaySet;
|
||||
};
|
||||
|
||||
const _findReferencedSeriesInstanceUIDsFromSOPInstanceUID = (
|
||||
displaySets,
|
||||
SOPInstanceUID
|
||||
) => {
|
||||
const imageSets = displaySets.filter(ds => ds instanceof ImageSet);
|
||||
|
||||
for (let i = 0; i < imageSets.length; i++) {
|
||||
const { images } = imageSets[i];
|
||||
for (let j = 0; j < images.length; j++) {
|
||||
if (images[j].SOPInstanceUID === SOPInstanceUID) {
|
||||
return [images[j].getData().metadata.SeriesInstanceUID];
|
||||
}
|
||||
}
|
||||
return {
|
||||
referencedDisplaySet : referencedDisplaySet,
|
||||
activatedLabelmapPromise : activatedLabelmapPromise
|
||||
}
|
||||
};
|
||||
|
||||
function _toArray(arrayOrObject) {
|
||||
return Array.isArray(arrayOrObject) ? arrayOrObject : [arrayOrObject];
|
||||
}
|
||||
@@ -25,12 +25,13 @@ export default {
|
||||
return toolbarModule;
|
||||
},
|
||||
getPanelModule({ commandsManager, api, servicesManager }) {
|
||||
const { UINotificationService } = servicesManager.services;
|
||||
const { UINotificationService, LoggerService } = servicesManager.services;
|
||||
|
||||
const ExtendedSegmentationPanel = props => {
|
||||
const { activeContexts } = api.hooks.useAppContext();
|
||||
|
||||
const onDisplaySetLoadFailureHandler = error => {
|
||||
LoggerService.error({ error, message: error.message });
|
||||
UINotificationService.show({
|
||||
title: 'DICOM Segmentation Loader',
|
||||
message: error.message,
|
||||
|
||||
@@ -20,7 +20,7 @@ export default async function setActiveLabelmap(
|
||||
displaySet,
|
||||
callback = () => {},
|
||||
onDisplaySetLoadFailure = err => {
|
||||
throw new Error(err.message);
|
||||
console.error(err.message);
|
||||
}
|
||||
) {
|
||||
const studyMetadata = studyMetadataManager.get(
|
||||
@@ -48,16 +48,15 @@ export default async function setActiveLabelmap(
|
||||
}
|
||||
|
||||
if (!displaySet.isLoaded) {
|
||||
const loadPromise = displaySet.load(referencedDisplaySet, studies);
|
||||
|
||||
loadPromise.catch(error => {
|
||||
try {
|
||||
await displaySet.load(referencedDisplaySet, studies);
|
||||
} catch (error) {
|
||||
displaySet.isLoaded = false;
|
||||
displaySet.loadError = true;
|
||||
onDisplaySetLoadFailure(error);
|
||||
|
||||
// Return old index.
|
||||
return activeLabelmapIndex;
|
||||
});
|
||||
|
||||
await loadPromise;
|
||||
return -1;
|
||||
}
|
||||
}
|
||||
|
||||
labelmapIndex =
|
||||
@@ -67,8 +66,11 @@ export default async function setActiveLabelmap(
|
||||
|
||||
// This might have just been created, so need to use the non-cached value.
|
||||
state = cornerstoneTools.getModule('segmentation').state;
|
||||
|
||||
brushStackState = state.series[firstImageId];
|
||||
brushStackState.activeLabelmapIndex = labelmapIndex;
|
||||
if (brushStackState) {
|
||||
brushStackState.activeLabelmapIndex = labelmapIndex;
|
||||
}
|
||||
|
||||
refreshViewports();
|
||||
callback();
|
||||
|
||||
@@ -3,6 +3,89 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.2.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.10...@ohif/extension-dicom-tag-browser@0.2.11) (2021-06-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.9...@ohif/extension-dicom-tag-browser@0.2.10) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.8...@ohif/extension-dicom-tag-browser@0.2.9) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.7...@ohif/extension-dicom-tag-browser@0.2.8) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.6...@ohif/extension-dicom-tag-browser@0.2.7) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.5...@ohif/extension-dicom-tag-browser@0.2.6) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.4...@ohif/extension-dicom-tag-browser@0.2.5) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.3...@ohif/extension-dicom-tag-browser@0.2.4) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.2...@ohif/extension-dicom-tag-browser@0.2.3) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.1...@ohif/extension-dicom-tag-browser@0.2.2) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-tag-browser@0.2.0...@ohif/extension-dicom-tag-browser@0.2.1) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-tag-browser",
|
||||
"version": "0.2.1",
|
||||
"version": "0.2.11",
|
||||
"description": "OHIF extension for checking DICOM headers.",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -28,12 +28,12 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^2.6.0",
|
||||
"dcmjs": "0.17.2",
|
||||
"dcmjs": "0.18.8",
|
||||
"react": "^16.8.6"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"dicomweb-client": "^0.6.0",
|
||||
"dicomweb-client": "^0.8.1",
|
||||
"moment": "2.24.0",
|
||||
"react-select": "^3.0.8"
|
||||
}
|
||||
|
||||
@@ -3,6 +3,11 @@
|
||||
margin-left: auto;
|
||||
}
|
||||
|
||||
.dicom-tag-browser-table-wrapper {
|
||||
height: 500px;
|
||||
overflow-y: scroll;
|
||||
}
|
||||
|
||||
.dicom-tag-browser-table tr {
|
||||
padding-left: 10px;
|
||||
padding-right: 10px;
|
||||
@@ -11,6 +16,20 @@
|
||||
white-space: nowrap;
|
||||
}
|
||||
|
||||
.dicom-tag-browser-content {
|
||||
overflow: hidden;
|
||||
width: 100%;
|
||||
padding-bottom: 50px;
|
||||
}
|
||||
|
||||
.dicom-tag-browser-instance-range .range {
|
||||
height: 20px;
|
||||
}
|
||||
|
||||
.dicom-tag-browser-instance-range {
|
||||
padding: 20px 0 20px 0;
|
||||
}
|
||||
|
||||
.dicom-tag-browser-table td.dicom-tag-browser-table-center {
|
||||
text-align: center;
|
||||
}
|
||||
|
||||
@@ -1,5 +1,6 @@
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import { classes, cornerstone as OHIFCornerstone } from '@ohif/core';
|
||||
import { Range } from '@ohif/ui';
|
||||
import dcmjs from 'dcmjs';
|
||||
import DicomBrowserSelect from './DicomBrowserSelect';
|
||||
import moment from 'moment';
|
||||
@@ -99,26 +100,35 @@ const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
|
||||
let instanceSelectList = null;
|
||||
|
||||
if (isImageStack) {
|
||||
const selectedInstanceValue = instanceList[activeInstance];
|
||||
|
||||
instanceSelectList = (
|
||||
<DicomBrowserSelect
|
||||
value={selectedInstanceValue}
|
||||
formatOptionLabel={DicomBrowserSelectItem}
|
||||
options={instanceList}
|
||||
/>
|
||||
<div className="dicom-tag-browser-instance-range">
|
||||
<Range
|
||||
showValue
|
||||
step={1}
|
||||
min={1}
|
||||
max={instanceList.length - 1}
|
||||
value={activeInstance}
|
||||
valueRenderer={value => <p>Instance Number: {value}</p>}
|
||||
onChange={({ target }) => {
|
||||
const instanceIndex = parseInt(target.value);
|
||||
setActiveInstance(instanceIndex);
|
||||
}}
|
||||
/>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
return (
|
||||
<div>
|
||||
<div className="dicom-tag-browser-content">
|
||||
<DicomBrowserSelect
|
||||
value={selectedDisplaySetValue}
|
||||
formatOptionLabel={DicomBrowserSelectItem}
|
||||
options={displaySetList}
|
||||
/>
|
||||
{instanceSelectList}
|
||||
<DicomTagTable tags={tags} meta={meta}></DicomTagTable>
|
||||
<div className="dicom-tag-browser-table-wrapper">
|
||||
<DicomTagTable tags={tags} meta={meta}></DicomTagTable>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
@@ -127,30 +137,28 @@ function DicomTagTable({ tags, meta }) {
|
||||
const rows = getFormattedRowsFromTags(tags, meta);
|
||||
|
||||
return (
|
||||
<div>
|
||||
<table className="dicom-tag-browser-table">
|
||||
<tbody>
|
||||
<tr>
|
||||
<th className="dicom-tag-browser-table-left">Tag</th>
|
||||
<th className="dicom-tag-browser-table-left">Value Representation</th>
|
||||
<th className="dicom-tag-browser-table-left">Keyword</th>
|
||||
<th className="dicom-tag-browser-table-left">Value</th>
|
||||
</tr>
|
||||
{rows.map((row, index) => {
|
||||
const className = row.className ? row.className : null;
|
||||
<table className="dicom-tag-browser-table">
|
||||
<tbody>
|
||||
<tr>
|
||||
<th className="dicom-tag-browser-table-left">Tag</th>
|
||||
<th className="dicom-tag-browser-table-left">Value Representation</th>
|
||||
<th className="dicom-tag-browser-table-left">Keyword</th>
|
||||
<th className="dicom-tag-browser-table-left">Value</th>
|
||||
</tr>
|
||||
{rows.map((row, index) => {
|
||||
const className = row.className ? row.className : null;
|
||||
|
||||
return (
|
||||
<tr className={className} key={`DICOMTagRow-${index}`}>
|
||||
<td>{row[0]}</td>
|
||||
<td className="dicom-tag-browser-table-center">{row[1]}</td>
|
||||
<td>{row[2]}</td>
|
||||
<td>{row[3]}</td>
|
||||
</tr>
|
||||
);
|
||||
})}
|
||||
</tbody>
|
||||
</table>
|
||||
</div>
|
||||
return (
|
||||
<tr className={className} key={`DICOMTagRow-${index}`}>
|
||||
<td>{row[0]}</td>
|
||||
<td className="dicom-tag-browser-table-center">{row[1]}</td>
|
||||
<td>{row[2]}</td>
|
||||
<td>{row[3]}</td>
|
||||
</tr>
|
||||
);
|
||||
})}
|
||||
</tbody>
|
||||
</table>
|
||||
);
|
||||
}
|
||||
|
||||
@@ -183,12 +191,16 @@ function getFormattedRowsFromTags(tags, meta) {
|
||||
} else {
|
||||
if (tagInfo.vr === 'xs') {
|
||||
try {
|
||||
const dataset = metadataProvider.getStudyDataset(meta.StudyInstanceUID);
|
||||
const dataset = metadataProvider.getStudyDataset(
|
||||
meta.StudyInstanceUID
|
||||
);
|
||||
const tag = dcmjs.data.Tag.fromPString(tagInfo.tag).toCleanString();
|
||||
const originalTagInfo = dataset[tag];
|
||||
tagInfo.vr = originalTagInfo.vr;
|
||||
} catch (error) {
|
||||
console.error(`Failed to parse value representation for tag '${tagInfo.keyword}'`);
|
||||
console.error(
|
||||
`Failed to parse value representation for tag '${tagInfo.keyword}'`
|
||||
);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -21,7 +21,7 @@ export default function getCommandsModule(servicesManager) {
|
||||
|
||||
const { UIModalService } = servicesManager.services;
|
||||
|
||||
const WrappedDicomTagBrowser = function () {
|
||||
const WrappedDicomTagBrowser = function() {
|
||||
return (
|
||||
<DicomTagBrowser
|
||||
displaySets={displaySets}
|
||||
@@ -34,7 +34,7 @@ export default function getCommandsModule(servicesManager) {
|
||||
content: WrappedDicomTagBrowser,
|
||||
title: `DICOM Tag Browser`,
|
||||
fullscreen: true,
|
||||
showScrollbar: true
|
||||
noScroll: true,
|
||||
});
|
||||
},
|
||||
};
|
||||
|
||||
@@ -3,6 +3,156 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.11.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.13...@ohif/extension-vtk@1.11.14) (2021-06-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.12...@ohif/extension-vtk@1.11.13) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.11...@ohif/extension-vtk@1.11.12) (2021-05-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.10...@ohif/extension-vtk@1.11.11) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.9...@ohif/extension-vtk@1.11.10) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.8...@ohif/extension-vtk@1.11.9) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.7...@ohif/extension-vtk@1.11.8) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.6...@ohif/extension-vtk@1.11.7) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.5...@ohif/extension-vtk@1.11.6) (2021-04-16)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.4...@ohif/extension-vtk@1.11.5) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.3...@ohif/extension-vtk@1.11.4) (2021-03-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.2...@ohif/extension-vtk@1.11.3) (2021-03-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.1...@ohif/extension-vtk@1.11.2) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.11.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.11.0...@ohif/extension-vtk@1.11.1) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.11.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.10.6...@ohif/extension-vtk@1.11.0) (2021-03-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **log:** add new log service ([14d6454](https://github.com/OHIF/Viewers/commit/14d6454eafaa2ccb50e133c2945c9558052ea27e))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.10.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.10.5...@ohif/extension-vtk@1.10.6) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.10.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.10.4...@ohif/extension-vtk@1.10.5) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.10.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.10.3...@ohif/extension-vtk@1.10.4) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.10.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.10.2...@ohif/extension-vtk@1.10.3) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-vtk",
|
||||
"version": "1.10.3",
|
||||
"version": "1.11.14",
|
||||
"description": "OHIF extension for VTK.js",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -35,7 +35,7 @@
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dcmjs": "0.17.2",
|
||||
"dcmjs": "0.18.8",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"i18next": "^17.0.3",
|
||||
"i18next-browser-languagedetector": "^3.0.1",
|
||||
@@ -53,8 +53,8 @@
|
||||
"react-vtkjs-viewport": "^0.14.2"
|
||||
},
|
||||
"devDependencies": {
|
||||
"@ohif/core": "^2.12.2",
|
||||
"@ohif/ui": "^1.8.1",
|
||||
"@ohif/core": "^2.13.13",
|
||||
"@ohif/ui": "^1.9.2",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dicom-parser": "^1.8.3",
|
||||
|
||||
@@ -360,12 +360,15 @@ class OHIFVTKViewport extends Component {
|
||||
} catch (error) {
|
||||
const errorTitle = 'Failed to load 2D MPR';
|
||||
console.error(errorTitle, error);
|
||||
const { UINotificationService } = this.props.servicesManager.services;
|
||||
const {
|
||||
UINotificationService,
|
||||
LoggerService,
|
||||
} = this.props.servicesManager.services;
|
||||
if (this.props.viewportIndex === 0) {
|
||||
const message = error.message.includes('buffer')
|
||||
? 'Dataset is too big to display in MPR'
|
||||
: error.message;
|
||||
console.error(errorTitle, error);
|
||||
LoggerService.error({ error, message });
|
||||
UINotificationService.show({
|
||||
title: errorTitle,
|
||||
message,
|
||||
@@ -428,11 +431,15 @@ class OHIFVTKViewport extends Component {
|
||||
};
|
||||
|
||||
const onPixelDataInsertedErrorCallback = error => {
|
||||
const { UINotificationService } = this.props.servicesManager.services;
|
||||
const {
|
||||
UINotificationService,
|
||||
LoggerService,
|
||||
} = this.props.servicesManager.services;
|
||||
|
||||
if (!this.hasError) {
|
||||
if (this.props.viewportIndex === 0) {
|
||||
// Only show the notification from one viewport 1 in MPR2D.
|
||||
LoggerService.error({ error, message: error.message });
|
||||
UINotificationService.show({
|
||||
title: 'MPR Load Error',
|
||||
message: error.message,
|
||||
|
||||
@@ -14,7 +14,9 @@ import OHIFVTKViewport from './OHIFVTKViewport';
|
||||
|
||||
const { BlendMode } = Constants;
|
||||
|
||||
const commandsModule = ({ commandsManager, UINotificationService }) => {
|
||||
const commandsModule = ({ commandsManager, servicesManager }) => {
|
||||
const { UINotificationService, LoggerService } = servicesManager.services;
|
||||
|
||||
// TODO: Put this somewhere else
|
||||
let apis = {};
|
||||
let defaultVOI;
|
||||
@@ -175,7 +177,7 @@ const commandsModule = ({ commandsManager, UINotificationService }) => {
|
||||
segmentNumber,
|
||||
frameIndex,
|
||||
frame,
|
||||
done = () => { },
|
||||
done = () => {},
|
||||
}) => {
|
||||
let api = apis[viewports.activeViewportIndex];
|
||||
|
||||
@@ -473,10 +475,12 @@ const commandsModule = ({ commandsManager, UINotificationService }) => {
|
||||
const volumeLength = dimensions[0] * dimensions[1] * dimensions[2];
|
||||
|
||||
if (volumeLength > maxBufferLengthFloat32) {
|
||||
const message =
|
||||
'This volume is too large to fit in WebGL 1 textures and will display incorrectly. Please use a different browser to view this data';
|
||||
LoggerService.error({ message });
|
||||
UINotificationService.show({
|
||||
title: 'Browser does not support WebGL 2',
|
||||
message:
|
||||
'This volume is too large to fit in WebGL 1 textures and will display incorrectly. Please use a different browser to view this data',
|
||||
message,
|
||||
type: 'error',
|
||||
autoClose: false,
|
||||
});
|
||||
|
||||
@@ -35,8 +35,7 @@ const vtkExtension = {
|
||||
return toolbarModule;
|
||||
},
|
||||
getCommandsModule({ commandsManager, servicesManager }) {
|
||||
const { UINotificationService } = servicesManager.services;
|
||||
return commandsModule({ commandsManager, UINotificationService });
|
||||
return commandsModule({ commandsManager, servicesManager });
|
||||
},
|
||||
};
|
||||
|
||||
|
||||
@@ -31,63 +31,7 @@ const _isDisplaySetReconstructable = (viewportSpecificData = {}, activeViewportI
|
||||
|
||||
if (!displaySet) {
|
||||
return false;
|
||||
}
|
||||
|
||||
// 2D MPR is not currently available for 4D datasets.
|
||||
|
||||
// Assuming that slices at different time have the same position, here we just check if
|
||||
// there are multiple slices for the same ImagePositionPatient and disable MPR.
|
||||
|
||||
// A better heuristic would be checking 4D tags, e.g. the presence of multiple TemporalPositionIdentifier values.
|
||||
// However, some studies (e.g. https://github.com/OHIF/Viewers/issues/2113) do not have such tags.
|
||||
|
||||
for (let ii = 0; ii < displaySet.numImageFrames; ++ii) {
|
||||
const image = displaySet.images[ii];
|
||||
if (!image) continue;
|
||||
|
||||
const imageIdControl = image.getImageId()
|
||||
const instanceMetadataControl = cornerstone.metaData.get('instance', imageIdControl)
|
||||
|
||||
if (!instanceMetadataControl ||
|
||||
instanceMetadataControl === undefined ||
|
||||
!instanceMetadataControl.ImagePositionPatient ||
|
||||
instanceMetadataControl.ImagePositionPatient === undefined) {
|
||||
// if ImagePositionPatient is missing, skip the 4D datasets check.
|
||||
// do not return false, because it could be a 3D dataset.
|
||||
continue;
|
||||
}
|
||||
|
||||
let xImagePositionPatientControl = instanceMetadataControl.ImagePositionPatient[0];
|
||||
let yImagePositionPatientControl = instanceMetadataControl.ImagePositionPatient[1];
|
||||
let zImagePositionPatientControl = instanceMetadataControl.ImagePositionPatient[2];
|
||||
|
||||
for (let jj = ii + 1; jj < displaySet.numImageFrames; ++jj) {
|
||||
const image = displaySet.images[jj];
|
||||
if (!image) continue;
|
||||
|
||||
const imageId = image.getImageId()
|
||||
const instanceMetadata = cornerstone.metaData.get('instance', imageId)
|
||||
|
||||
if (!instanceMetadata ||
|
||||
instanceMetadata === undefined ||
|
||||
!instanceMetadata.ImagePositionPatient ||
|
||||
instanceMetadata.ImagePositionPatient === undefined) {
|
||||
// if ImagePositionPatient is missing, skip the 4D datasets check.
|
||||
// do not return false, because it could be a 3D dataset.
|
||||
continue;
|
||||
}
|
||||
|
||||
let xImagePositionPatient = instanceMetadata.ImagePositionPatient[0];
|
||||
let yImagePositionPatient = instanceMetadata.ImagePositionPatient[1];
|
||||
let zImagePositionPatient = instanceMetadata.ImagePositionPatient[2];
|
||||
|
||||
if (xImagePositionPatientControl === xImagePositionPatient &&
|
||||
yImagePositionPatientControl === yImagePositionPatient &&
|
||||
zImagePositionPatientControl === zImagePositionPatient) {
|
||||
return false;
|
||||
}
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
return displaySet.isReconstructable;
|
||||
};
|
||||
|
||||
@@ -3,6 +3,154 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [2.13.13](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.12...@ohif/core@2.13.13) (2021-06-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.12](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.11...@ohif/core@2.13.12) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.11](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.10...@ohif/core@2.13.11) (2021-05-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.10](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.9...@ohif/core@2.13.10) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.9](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.8...@ohif/core@2.13.9) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.8](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.7...@ohif/core@2.13.8) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.7](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.6...@ohif/core@2.13.7) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.6](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.5...@ohif/core@2.13.6) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.5](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.4...@ohif/core@2.13.5) (2021-04-16)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.4](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.3...@ohif/core@2.13.4) (2021-04-15)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **wl:** fix metadata provider window level issues after dicomweb update (string vs number) ([8681036](https://github.com/OHIF/Viewers/commit/8681036b2133cfc325658691a256a86b5e36705f))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.3](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.2...@ohif/core@2.13.3) (2021-03-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.2](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.1...@ohif/core@2.13.2) (2021-03-25)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* IDC-2288: Update toolbar tabs after derived displayset loaded ([#2307](https://github.com/OHIF/Viewers/issues/2307)) ([6e723eb](https://github.com/OHIF/Viewers/commit/6e723ebced58852007ca553792c740976cfc4201))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.13.1](https://github.com/OHIF/Viewers/compare/@ohif/core@2.13.0...@ohif/core@2.13.1) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [2.13.0](https://github.com/OHIF/Viewers/compare/@ohif/core@2.12.5...@ohif/core@2.13.0) (2021-03-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **log:** add new log service ([14d6454](https://github.com/OHIF/Viewers/commit/14d6454eafaa2ccb50e133c2945c9558052ea27e))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.12.5](https://github.com/OHIF/Viewers/compare/@ohif/core@2.12.4...@ohif/core@2.12.5) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.12.4](https://github.com/OHIF/Viewers/compare/@ohif/core@2.12.3...@ohif/core@2.12.4) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.12.3](https://github.com/OHIF/Viewers/compare/@ohif/core@2.12.2...@ohif/core@2.12.3) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.12.2](https://github.com/OHIF/Viewers/compare/@ohif/core@2.12.1...@ohif/core@2.12.2) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/core",
|
||||
"version": "2.12.2",
|
||||
"version": "2.13.13",
|
||||
"description": "Generic business logic for web-based medical imaging applications",
|
||||
"author": "OHIF Core Team",
|
||||
"license": "MIT",
|
||||
@@ -39,13 +39,14 @@
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"ajv": "^6.10.0",
|
||||
"dcmjs": "0.17.2",
|
||||
"dicomweb-client": "^0.6.0",
|
||||
"dcmjs": "0.18.8",
|
||||
"dicomweb-client": "^0.8.1",
|
||||
"immer": "6.0.2",
|
||||
"isomorphic-base64": "^1.0.2",
|
||||
"lodash.clonedeep": "^4.5.0",
|
||||
"lodash.merge": "^4.6.1",
|
||||
"mousetrap": "^1.6.3",
|
||||
"retry": "^0.12.0",
|
||||
"validate.js": "^0.12.0"
|
||||
}
|
||||
}
|
||||
@@ -6,6 +6,7 @@ import parseDicomStructuredReport from './parseDicomStructuredReport';
|
||||
import parseMeasurementsData from './parseMeasurementsData';
|
||||
import getAllDisplaySets from './utils/getAllDisplaySets';
|
||||
import errorHandler from '../errorHandler';
|
||||
import getXHRRetryRequestHook from '../utils/xhrRetryRequestHook';
|
||||
|
||||
const VERSION_NAME = 'dcmjs-0.0';
|
||||
const TRANSFER_SYNTAX_UID = '1.2.840.10008.1.2.1';
|
||||
@@ -23,6 +24,7 @@ const retrieveMeasurementFromSR = async (series, studies, serverUrl) => {
|
||||
url: serverUrl,
|
||||
headers: DICOMWeb.getAuthorizationHeader(),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
};
|
||||
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
@@ -74,6 +76,7 @@ const stowSRFromMeasurements = async (measurements, serverUrl) => {
|
||||
url: serverUrl,
|
||||
headers: DICOMWeb.getAuthorizationHeader(),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
};
|
||||
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
|
||||
@@ -77,7 +77,6 @@ const parseDicomStructuredReport = (part10SRArrayBuffer, displaySets) => {
|
||||
|
||||
/**
|
||||
* Function to create imagePath with all imageData related
|
||||
*
|
||||
* @param {string} StudyInstanceUID
|
||||
* @param {string} SeriesInstanceUID
|
||||
* @param {string} SOPInstanceUID
|
||||
|
||||
@@ -63,10 +63,15 @@ export class HotkeysManager {
|
||||
|
||||
definitions.forEach(definition => this.registerHotkeys(definition));
|
||||
} catch (error) {
|
||||
const { UINotificationService } = this._servicesManager.services;
|
||||
const {
|
||||
UINotificationService,
|
||||
LoggerService,
|
||||
} = this._servicesManager.services;
|
||||
const message = 'Erro while setting hotkeys';
|
||||
LoggerService.error({ error, message });
|
||||
UINotificationService.show({
|
||||
title: 'Hotkeys Manager',
|
||||
message: 'Erro while setting hotkeys',
|
||||
message,
|
||||
type: 'error',
|
||||
});
|
||||
}
|
||||
|
||||
@@ -4,6 +4,7 @@ import dicomParser from 'dicom-parser';
|
||||
import getPixelSpacingInformation from '../utils/metadataProvider/getPixelSpacingInformation';
|
||||
import fetchPaletteColorLookupTableData from '../utils/metadataProvider/fetchPaletteColorLookupTableData';
|
||||
import fetchOverlayData from '../utils/metadataProvider/fetchOverlayData';
|
||||
import validNumber from '../utils/metadataProvider/validNumber';
|
||||
|
||||
class MetadataProvider {
|
||||
constructor() {
|
||||
@@ -284,7 +285,7 @@ class MetadataProvider {
|
||||
|
||||
break;
|
||||
case WADO_IMAGE_LOADER_TAGS.VOI_LUT_MODULE:
|
||||
const { WindowCenter, WindowWidth } = instance;
|
||||
let { WindowCenter, WindowWidth } = instance;
|
||||
|
||||
const windowCenter = Array.isArray(WindowCenter)
|
||||
? WindowCenter
|
||||
@@ -294,15 +295,17 @@ class MetadataProvider {
|
||||
: [WindowWidth];
|
||||
|
||||
metadata = {
|
||||
windowCenter,
|
||||
windowWidth,
|
||||
windowCenter: validNumber(windowCenter),
|
||||
windowWidth: validNumber(windowWidth),
|
||||
};
|
||||
|
||||
break;
|
||||
case WADO_IMAGE_LOADER_TAGS.MODALITY_LUT_MODULE:
|
||||
const rescaleSlope = validNumber(instance.RescaleSlope);
|
||||
const rescaleIntercept = validNumber(instance.RescaleIntercept);
|
||||
metadata = {
|
||||
rescaleIntercept: instance.RescaleIntercept,
|
||||
rescaleSlope: instance.RescaleSlope,
|
||||
rescaleIntercept,
|
||||
rescaleSlope,
|
||||
rescaleType: instance.RescaleType,
|
||||
};
|
||||
break;
|
||||
|
||||
@@ -9,11 +9,12 @@ import { SeriesMetadata } from './SeriesMetadata';
|
||||
import { api } from 'dicomweb-client';
|
||||
// - createStacks
|
||||
import { isImage } from '../../utils/isImage';
|
||||
import isDisplaySetReconstructable from '../../utils/isDisplaySetReconstructable';
|
||||
import { isDisplaySetReconstructable, isSpacingUniform } from '../../utils/isDisplaySetReconstructable';
|
||||
import errorHandler from '../../errorHandler';
|
||||
import isLowPriorityModality from '../../utils/isLowPriorityModality';
|
||||
import getXHRRetryRequestHook from '../../utils/xhrRetryRequestHook';
|
||||
|
||||
export class StudyMetadata extends Metadata {
|
||||
class StudyMetadata extends Metadata {
|
||||
constructor(data, uid) {
|
||||
super(data, uid);
|
||||
// Initialize Private Properties
|
||||
@@ -226,6 +227,56 @@ export class StudyMetadata extends Metadata {
|
||||
displaySets.map(displaySet => this._derivedDisplaySets.push(displaySet));
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Returns the source display set of the derivated display set.
|
||||
* @param {object} derivatedDisplaySet
|
||||
* @param {array[StudyMetadata]} studies
|
||||
* @return {object} source display set.
|
||||
*/
|
||||
static getReferencedDisplaySet(derivatedDisplaySet, studies) {
|
||||
let allDisplaySets = [];
|
||||
|
||||
studies.forEach(study => {
|
||||
allDisplaySets = allDisplaySets.concat(study.displaySets);
|
||||
});
|
||||
|
||||
const otherDisplaySets = allDisplaySets.filter(
|
||||
ds => ds.displaySetInstanceUID !== derivatedDisplaySet.displaySetInstanceUID
|
||||
);
|
||||
|
||||
const { metadata } = derivatedDisplaySet;
|
||||
|
||||
let referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromSourceImageSequence
|
||||
(metadata, otherDisplaySets);
|
||||
|
||||
let noReferencedSeriesAvailable = !referencedSeriesInstanceUIDs ||
|
||||
referencedSeriesInstanceUIDs.length === 0;
|
||||
if (noReferencedSeriesAvailable) {
|
||||
referencedSeriesInstanceUIDs =
|
||||
_findReferencedSeriesInstanceUIDsFromReferencedSeriesSequence
|
||||
(metadata);
|
||||
}
|
||||
|
||||
noReferencedSeriesAvailable = !referencedSeriesInstanceUIDs ||
|
||||
referencedSeriesInstanceUIDs.length === 0;
|
||||
if (noReferencedSeriesAvailable) {
|
||||
referencedSeriesInstanceUIDs =
|
||||
_findReferencedSeriesInstanceUIDsFromReferencedImageSequence
|
||||
(metadata, otherDisplaySets);
|
||||
}
|
||||
|
||||
const referencedSeriesAvailable = referencedSeriesInstanceUIDs &&
|
||||
referencedSeriesInstanceUIDs.length !== 0;
|
||||
if (referencedSeriesAvailable) {
|
||||
const referencedDisplaySet = otherDisplaySets.find(ds =>
|
||||
referencedSeriesInstanceUIDs.includes(ds.SeriesInstanceUID)
|
||||
);
|
||||
;
|
||||
return referencedDisplaySet;
|
||||
}
|
||||
};
|
||||
|
||||
/**
|
||||
* Returns a list of derived datasets in the study, filtered by the given filter.
|
||||
* @param {object} filter An object containing search filters
|
||||
@@ -252,20 +303,7 @@ export class StudyMetadata extends Metadata {
|
||||
if (referencedSeriesInstanceUID) {
|
||||
filteredDerivedDisplaySets = filteredDerivedDisplaySets.filter(
|
||||
displaySet => {
|
||||
if (!displaySet.metadata.ReferencedSeriesSequence) {
|
||||
return false;
|
||||
}
|
||||
|
||||
const ReferencedSeriesSequence = Array.isArray(
|
||||
displaySet.metadata.ReferencedSeriesSequence
|
||||
)
|
||||
? displaySet.metadata.ReferencedSeriesSequence
|
||||
: [displaySet.metadata.ReferencedSeriesSequence];
|
||||
|
||||
return ReferencedSeriesSequence.some(
|
||||
ReferencedSeries =>
|
||||
ReferencedSeries.SeriesInstanceUID === referencedSeriesInstanceUID
|
||||
);
|
||||
return StudyMetadata.getReferencedDisplaySet(displaySet, [this]).SeriesInstanceUID === referencedSeriesInstanceUID;
|
||||
}
|
||||
);
|
||||
}
|
||||
@@ -273,7 +311,7 @@ export class StudyMetadata extends Metadata {
|
||||
if (referencedFrameOfReferenceUID) {
|
||||
filteredDerivedDisplaySets = filteredDerivedDisplaySets.filter(
|
||||
displaySet =>
|
||||
displaySet.ReferencedFrameOfReferenceUID ===
|
||||
displaySet.FrameOfReferenceUID ===
|
||||
referencedFrameOfReferenceUID
|
||||
);
|
||||
}
|
||||
@@ -767,6 +805,16 @@ const isMultiFrame = instance => {
|
||||
return instance.getTagValue('NumberOfFrames') > 1;
|
||||
};
|
||||
|
||||
/**
|
||||
* Creates a display set for a series.
|
||||
* Checks if a series is reconstructable to a 3D volume.
|
||||
* If reconstructable, the frames are sorted.
|
||||
*
|
||||
* @param {SeriesMetadata} series The series metadata object from which the display sets will be created
|
||||
* @param {Object[]} instances An array of `OHIFInstanceMetadata` objects.
|
||||
*
|
||||
* @returns {Object} imageSet.
|
||||
*/
|
||||
const makeDisplaySet = (series, instances) => {
|
||||
const instance = instances[0];
|
||||
const imageSet = new ImageSet(instances);
|
||||
@@ -786,7 +834,7 @@ const makeDisplaySet = (series, instances) => {
|
||||
isMultiFrame: isMultiFrame(instance),
|
||||
});
|
||||
|
||||
// Sort the images in this series if needed
|
||||
// Sort the images in this series by instanceNumber
|
||||
const shallSort = true; //!OHIF.utils.ObjectPath.get(Meteor, 'settings.public.ui.sortSeriesByIncomingOrder');
|
||||
if (shallSort) {
|
||||
imageSet.sortBy((a, b) => {
|
||||
@@ -804,18 +852,32 @@ const makeDisplaySet = (series, instances) => {
|
||||
imageSet.getImage(0).getTagValue('InstanceNumber')
|
||||
);
|
||||
|
||||
const isReconstructable = isDisplaySetReconstructable(instances);
|
||||
|
||||
imageSet.isReconstructable = isReconstructable.value;
|
||||
const displayReconstructableInfo = isDisplaySetReconstructable(instances);
|
||||
imageSet.isReconstructable = displayReconstructableInfo.value;
|
||||
|
||||
let displaySpacingInfo = undefined;
|
||||
if (shallSort && imageSet.isReconstructable) {
|
||||
// sort images by image position
|
||||
imageSet.sortByImagePositionPatient();
|
||||
|
||||
// check if the spacing is uniform and update isReconstructable
|
||||
const datasetIs4D = displayReconstructableInfo.reconstructionIssues.find
|
||||
(issue => issue === ReconstructionIssues.DATASET_4D);
|
||||
displaySpacingInfo = isSpacingUniform(imageSet.images, datasetIs4D);
|
||||
imageSet.isReconstructable = displaySpacingInfo.isUniform;
|
||||
|
||||
if (displaySpacingInfo.missingFrames) {
|
||||
// TODO -> This is currently unused, but may be used for reconstructing
|
||||
// Volumes with gaps later on.
|
||||
imageSet.missingFrames = displaySpacingInfo.missingFrames;
|
||||
}
|
||||
}
|
||||
|
||||
if (isReconstructable.missingFrames) {
|
||||
// TODO -> This is currently unused, but may be used for reconstructing
|
||||
// Volumes with gaps later on.
|
||||
imageSet.missingFrames = isReconstructable.missingFrames;
|
||||
if (!imageSet.displayReconstructableInfo) {
|
||||
// It is not reconstrabale Save type of warning
|
||||
imageSet.reconstructionIssues = displaySpacingInfo ?
|
||||
displayReconstructableInfo.reconstructionIssues.concat(displaySpacingInfo.reconstructionIssues) :
|
||||
displayReconstructableInfo.reconstructionIssues;
|
||||
}
|
||||
|
||||
return imageSet;
|
||||
@@ -878,6 +940,7 @@ function _getDisplaySetFromSopClassModule(
|
||||
url: study.getData().wadoRoot,
|
||||
headers,
|
||||
errorInterceptor,
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
});
|
||||
|
||||
let displaySet = plugin.getDisplaySetFromSeries(
|
||||
@@ -892,3 +955,147 @@ function _getDisplaySetFromSopClassModule(
|
||||
}
|
||||
return displaySet;
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the referenced series instance UIDs by searching the information in the
|
||||
* ReferencedSeriesSequence.
|
||||
* @param {object} derivatedDisplaySet.metadata
|
||||
* @return {array[string]} referenced series instance UIDs.
|
||||
*/
|
||||
function _findReferencedSeriesInstanceUIDsFromReferencedSeriesSequence (
|
||||
metadata,
|
||||
) {
|
||||
if (!metadata.ReferencedSeriesSequence) {
|
||||
return;
|
||||
}
|
||||
|
||||
let referencedSeriesInstanceUIDs;
|
||||
const ReferencedSeriesSequence = _toArray(
|
||||
metadata.ReferencedSeriesSequence
|
||||
);
|
||||
|
||||
referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
|
||||
ReferencedSeries => ReferencedSeries.SeriesInstanceUID
|
||||
);
|
||||
|
||||
return referencedSeriesInstanceUIDs;
|
||||
};
|
||||
|
||||
/**
|
||||
* Returns the referenced series instance UIDs by searching the information in the
|
||||
* ReferencedImageSequence.
|
||||
* @param {object} derivatedDisplaySet.metadata
|
||||
* @param {array[object]} displaysets
|
||||
* @return {array[string]} referenced series instance UIDs.
|
||||
*/
|
||||
function _findReferencedSeriesInstanceUIDsFromReferencedImageSequence (
|
||||
metadata,
|
||||
displaySets
|
||||
) {
|
||||
if (!metadata.ReferencedImageSequence) {
|
||||
return;
|
||||
}
|
||||
|
||||
let referencedSeriesInstanceUIDs;
|
||||
const referencedImageArray = _toArray(metadata.ReferencedImageSequence);
|
||||
for (let i = 0; i < referencedImageArray.length; i++) {
|
||||
const { ReferencedSOPInstanceUID } = referencedImageArray[i];
|
||||
if (!ReferencedSOPInstanceUID) {
|
||||
continue;
|
||||
}
|
||||
|
||||
referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromSOPInstanceUID(
|
||||
displaySets,
|
||||
ReferencedSOPInstanceUID
|
||||
);
|
||||
|
||||
if (referencedSeriesInstanceUIDs && referencedSeriesInstanceUIDs.length !== 0) {
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
return referencedSeriesInstanceUIDs;
|
||||
};
|
||||
|
||||
/**
|
||||
* Returns the referenced series instance UIDs by searching the information in the
|
||||
* SourceImageSequence.
|
||||
* @param {object} derivatedDisplaySet.metadata
|
||||
* @param {array[object]} displaysets
|
||||
* @return {array[string]} referenced series instance UIDs.
|
||||
*/
|
||||
function _findReferencedSeriesInstanceUIDsFromSourceImageSequence (
|
||||
metadata,
|
||||
displaySets
|
||||
) {
|
||||
let SourceImageSequence;
|
||||
|
||||
if (metadata.SourceImageSequence) {
|
||||
SourceImageSequence = metadata.SourceImageSequence;
|
||||
} else {
|
||||
const { PerFrameFunctionalGroupsSequence } = metadata;
|
||||
const firstFunctionalGroups = _toArray(
|
||||
PerFrameFunctionalGroupsSequence
|
||||
)[0];
|
||||
if (firstFunctionalGroups) {
|
||||
const { DerivationImageSequence } = firstFunctionalGroups;
|
||||
SourceImageSequence = DerivationImageSequence;
|
||||
}
|
||||
}
|
||||
|
||||
if (!SourceImageSequence) {
|
||||
return;
|
||||
}
|
||||
|
||||
const sourceImageArray = _toArray(SourceImageSequence);
|
||||
|
||||
let referencedSeriesInstanceUIDs;
|
||||
for (let i = 0; i < sourceImageArray.length; i++) {
|
||||
const { ReferencedSOPInstanceUID } = sourceImageArray[i];
|
||||
referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromSOPInstanceUID(
|
||||
displaySets,
|
||||
ReferencedSOPInstanceUID
|
||||
);
|
||||
if (referencedSeriesInstanceUIDs && referencedSeriesInstanceUIDs.length !== 0) {
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
return referencedSeriesInstanceUIDs;
|
||||
};
|
||||
|
||||
/**
|
||||
* Returns the referenced series instance UIDs by searching the information in the
|
||||
* SOPInstanceUID of the displaySets.
|
||||
* @param {array[object]} displaysets
|
||||
* @param {string} SOPInstanceUID
|
||||
* @return {array[string]} referenced series instance UIDs.
|
||||
*/
|
||||
function _findReferencedSeriesInstanceUIDsFromSOPInstanceUID (
|
||||
displaySets,
|
||||
SOPInstanceUID
|
||||
) {
|
||||
const imageSets = displaySets.filter(ds => ds instanceof ImageSet);
|
||||
|
||||
for (let i = 0; i < imageSets.length; i++) {
|
||||
const { images } = imageSets[i];
|
||||
if (!images) {
|
||||
continue;
|
||||
}
|
||||
for (let j = 0; j < images.length; j++) {
|
||||
const image = images[j];
|
||||
if (!image) {
|
||||
continue;
|
||||
}
|
||||
if (image.SOPInstanceUID === SOPInstanceUID) {
|
||||
return [image.getData().metadata.SeriesInstanceUID];
|
||||
}
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
function _toArray(arrayOrObject) {
|
||||
return Array.isArray(arrayOrObject) ? arrayOrObject : [arrayOrObject];
|
||||
}
|
||||
|
||||
export {StudyMetadata};
|
||||
@@ -0,0 +1,11 @@
|
||||
const ReconstructionIssues = {
|
||||
DATASET_4D: 'datasetis4D',
|
||||
VARYING_IMAGESDIMENSIONS: 'imagesdimensionsvarying',
|
||||
VARYING_IMAGESCOMPONENTS: 'imagescomponentsvarying',
|
||||
VARYING_IMAGESORIENTATION: 'imagesorientationvarying',
|
||||
MISSING_FRAMES: 'missingframes',
|
||||
IRREGULAR_SPACING: 'irregularspacing',
|
||||
MULTIFFRAMES: 'multiframe',
|
||||
};
|
||||
|
||||
export {ReconstructionIssues};
|
||||
@@ -26,6 +26,7 @@ import {
|
||||
UIModalService,
|
||||
UIDialogService,
|
||||
MeasurementService,
|
||||
LoggerService,
|
||||
} from './services';
|
||||
|
||||
const OHIF = {
|
||||
@@ -60,6 +61,7 @@ const OHIF = {
|
||||
UIModalService,
|
||||
UIDialogService,
|
||||
MeasurementService,
|
||||
LoggerService,
|
||||
};
|
||||
|
||||
export {
|
||||
@@ -93,6 +95,7 @@ export {
|
||||
UIModalService,
|
||||
UIDialogService,
|
||||
MeasurementService,
|
||||
LoggerService,
|
||||
};
|
||||
|
||||
export { OHIF };
|
||||
|
||||
@@ -14,6 +14,7 @@ describe('Top level exports', () => {
|
||||
'UIModalService',
|
||||
'UIDialogService',
|
||||
'MeasurementService',
|
||||
'LoggerService',
|
||||
//
|
||||
'utils',
|
||||
'hotkeys',
|
||||
|
||||
@@ -0,0 +1,67 @@
|
||||
const name = 'LoggerService';
|
||||
|
||||
const publicAPI = {
|
||||
name,
|
||||
info: _info,
|
||||
error: _error,
|
||||
setServiceImplementation,
|
||||
};
|
||||
|
||||
const serviceImplementation = {
|
||||
_info: () => console.warn('info() NOT IMPLEMENTED'),
|
||||
_error: () => console.warn('error() NOT IMPLEMENTED'),
|
||||
};
|
||||
|
||||
/**
|
||||
* Logs an info
|
||||
*
|
||||
* @param {object} props { message, displayOnConsole }
|
||||
*/
|
||||
function _info({ message, displayOnConsole }) {
|
||||
return serviceImplementation._info({
|
||||
message,
|
||||
displayOnConsole,
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Logs an error
|
||||
*
|
||||
* @param {object} props { error, stack, message, displayOnConsole }
|
||||
* @returns void
|
||||
*/
|
||||
function _error({ error, stack, message, displayOnConsole }) {
|
||||
return serviceImplementation._error({
|
||||
error,
|
||||
stack,
|
||||
message,
|
||||
displayOnConsole,
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
*
|
||||
*
|
||||
* @param {*} {
|
||||
* info: infoImplementation,
|
||||
* error: errorImplementation,
|
||||
* }
|
||||
*/
|
||||
function setServiceImplementation({
|
||||
info: infoImplementation,
|
||||
error: errorImplementation,
|
||||
}) {
|
||||
if (infoImplementation) {
|
||||
serviceImplementation._info = infoImplementation;
|
||||
}
|
||||
if (errorImplementation) {
|
||||
serviceImplementation._error = errorImplementation;
|
||||
}
|
||||
}
|
||||
|
||||
export default {
|
||||
name,
|
||||
create: ({ configuration = {} }) => {
|
||||
return publicAPI;
|
||||
},
|
||||
};
|
||||
@@ -9,7 +9,8 @@
|
||||
* @property {boolean} [closeButton=true] Should the modal body render the close button.
|
||||
* @property {string} [title=null] Should the modal render the title independently of the body content.
|
||||
* @property {string} [customClassName=null] The custom class to style the modal.
|
||||
* @property {boolean} [showScrollbar=null] Show or hide scrollbar.
|
||||
* @property {boolean} [showScrollbar=false] Show or hide scrollbar.
|
||||
* @property {boolean} [noScroll=false] Disable or not the scrollbar.
|
||||
*/
|
||||
|
||||
const name = 'UIModalService';
|
||||
@@ -29,7 +30,7 @@ const serviceImplementation = {
|
||||
/**
|
||||
* Show a new UI modal;
|
||||
*
|
||||
* @param {ModalProps} props { content, contentProps, shouldCloseOnEsc, isOpen, onClose, closeButton, title, customClassName, showScrollbar }
|
||||
* @param {ModalProps} props { content, contentProps, shouldCloseOnEsc, isOpen, onClose, closeButton, title, customClassName, showScrollbar, noScroll }
|
||||
*/
|
||||
function _show({
|
||||
content = null,
|
||||
@@ -41,7 +42,8 @@ function _show({
|
||||
title = null,
|
||||
fullscreen = false,
|
||||
customClassName = null,
|
||||
showScrollbar = false
|
||||
showScrollbar = false,
|
||||
noScroll = false,
|
||||
}) {
|
||||
return serviceImplementation._show({
|
||||
content,
|
||||
@@ -53,7 +55,8 @@ function _show({
|
||||
title,
|
||||
fullscreen,
|
||||
customClassName,
|
||||
showScrollbar
|
||||
showScrollbar,
|
||||
noScroll,
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
@@ -3,6 +3,7 @@ import UINotificationService from './UINotificationService';
|
||||
import UIModalService from './UIModalService';
|
||||
import UIDialogService from './UIDialogService';
|
||||
import MeasurementService from './MeasurementService';
|
||||
import LoggerService from './LoggerService';
|
||||
|
||||
export {
|
||||
UINotificationService,
|
||||
@@ -10,4 +11,5 @@ export {
|
||||
UIDialogService,
|
||||
ServicesManager,
|
||||
MeasurementService,
|
||||
LoggerService,
|
||||
};
|
||||
@@ -2,6 +2,7 @@ import { api } from 'dicomweb-client';
|
||||
import DICOMWeb from '../../../DICOMWeb/';
|
||||
|
||||
import errorHandler from '../../../errorHandler';
|
||||
import getXHRRetryRequestHook from '../../../utils/xhrRetryRequestHook';
|
||||
|
||||
/**
|
||||
* Creates a QIDO date string for a date range query
|
||||
@@ -118,6 +119,7 @@ export default function Studies(server, filter) {
|
||||
url: server.qidoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
};
|
||||
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
|
||||
@@ -10,6 +10,7 @@ import {
|
||||
} from './studyInstanceHelpers';
|
||||
|
||||
import errorHandler from '../../../errorHandler';
|
||||
import { getXHRRetryRequestHook } from '../../../utils/xhrRetryRequestHook';
|
||||
|
||||
const { naturalizeDataset } = dcmjs.data.DicomMetaDictionary;
|
||||
|
||||
@@ -76,6 +77,7 @@ export default class RetrieveMetadataLoaderAsync extends RetrieveMetadataLoader
|
||||
url: server.qidoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
});
|
||||
|
||||
this.client = client;
|
||||
|
||||
@@ -4,6 +4,7 @@ import { createStudyFromSOPInstanceList } from './studyInstanceHelpers';
|
||||
import RetrieveMetadataLoader from './retrieveMetadataLoader';
|
||||
|
||||
import errorHandler from '../../../errorHandler';
|
||||
import getXHRRetryRequestHook from '../../../utils/xhrRetryRequestHook';
|
||||
|
||||
/**
|
||||
* Class for sync load of study metadata.
|
||||
@@ -61,6 +62,7 @@ export default class RetrieveMetadataLoaderSync extends RetrieveMetadataLoader {
|
||||
url: server.wadoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
});
|
||||
|
||||
this.client = client;
|
||||
|
||||
@@ -4,6 +4,7 @@ import { api } from 'dicomweb-client';
|
||||
import DICOMWeb from '../DICOMWeb';
|
||||
|
||||
import errorHandler from '../errorHandler';
|
||||
import getXHRRetryRequestHook from './xhrRetryRequestHook';
|
||||
|
||||
const getImageId = imageObj => {
|
||||
if (!imageObj) {
|
||||
@@ -66,6 +67,7 @@ const wadorsRetriever = (
|
||||
url,
|
||||
headers,
|
||||
errorInterceptor,
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
};
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
|
||||
|
||||
@@ -18,6 +18,7 @@ import isDicomUid from './isDicomUid';
|
||||
import resolveObjectPath from './resolveObjectPath';
|
||||
import * as hierarchicalListUtils from './hierarchicalListUtils';
|
||||
import * as progressTrackingUtils from './progressTrackingUtils';
|
||||
import xhrRetryRequestHook from './xhrRetryRequestHook';
|
||||
|
||||
const utils = {
|
||||
guid,
|
||||
@@ -40,6 +41,7 @@ const utils = {
|
||||
resolveObjectPath,
|
||||
hierarchicalListUtils,
|
||||
progressTrackingUtils,
|
||||
xhrRetryRequestHook,
|
||||
};
|
||||
|
||||
export {
|
||||
@@ -63,6 +65,7 @@ export {
|
||||
resolveObjectPath,
|
||||
hierarchicalListUtils,
|
||||
progressTrackingUtils,
|
||||
xhrRetryRequestHook,
|
||||
};
|
||||
|
||||
export default utils;
|
||||
@@ -23,6 +23,7 @@ describe('Top level exports', () => {
|
||||
'resolveObjectPath',
|
||||
'hierarchicalListUtils',
|
||||
'progressTrackingUtils',
|
||||
'xhrRetryRequestHook',
|
||||
].sort();
|
||||
|
||||
const exports = Object.keys(utils.default).sort();
|
||||
|
||||
@@ -1,9 +1,14 @@
|
||||
import { ReconstructionIssues } from './../enums.js';
|
||||
|
||||
|
||||
/**
|
||||
* Checks if a series is reconstructable to a 3D volume.
|
||||
*
|
||||
* @param {Object[]} instances An array of `OHIFInstanceMetadata` objects.
|
||||
* @param {Object[]} An array of `OHIFInstanceMetadata` objects.
|
||||
*
|
||||
* @returns {Object} value, reconstructionIssues.
|
||||
*/
|
||||
export default function isDisplaySetReconstructable(instances) {
|
||||
function isDisplaySetReconstructable(instances) {
|
||||
if (!instances.length) {
|
||||
return { value: false };
|
||||
}
|
||||
@@ -23,31 +28,45 @@ export default function isDisplaySetReconstructable(instances) {
|
||||
}
|
||||
|
||||
if (isMultiframe) {
|
||||
return processMultiframe(instances[0]);
|
||||
return processMultiframe();
|
||||
} else {
|
||||
return processSingleframe(instances);
|
||||
}
|
||||
}
|
||||
|
||||
function processMultiframe(instance) {
|
||||
//TODO: deal with multriframe checks! return false for now as can't reconstruct.
|
||||
return { value: false };
|
||||
/**
|
||||
* Process reconstructable multiframes checks
|
||||
* TODO: deal with multriframe checks! return false for now as can't reconstruct.
|
||||
* *
|
||||
* @returns {Object} value and reconstructionIssues.
|
||||
*/
|
||||
function processMultiframe() {
|
||||
const reconstructionIssues = [ReconstructionIssues.MULTIFRAMES];
|
||||
return { value: false, reconstructionIssues };
|
||||
}
|
||||
|
||||
/**
|
||||
* Process reconstructable single frame checks
|
||||
*
|
||||
* @param {Object[]} An array of `OHIFInstanceMetadata` objects.
|
||||
*
|
||||
* @returns {Object} value and reconstructionIssues.
|
||||
*/
|
||||
function processSingleframe(instances) {
|
||||
const n = instances.length;
|
||||
const firstImage = instances[0].getData().metadata;
|
||||
const firstImageRows = firstImage.Rows;
|
||||
const firstImageColumns = firstImage.Columns;
|
||||
const firstImageSamplesPerPixel = firstImage.SamplesPerPixel;
|
||||
const firstImageOrientationPatient = firstImage.ImageOrientationPatient;
|
||||
const firstImagePositionPatient = firstImage.ImagePositionPatient;
|
||||
|
||||
const reconstructionIssues = [];
|
||||
// Can't reconstruct if we:
|
||||
// -- Have a different dimensions within a displaySet.
|
||||
// -- Have a different number of components within a displaySet.
|
||||
// -- Have different orientations within a displaySet.
|
||||
for (let i = 1; i < instances.length; i++) {
|
||||
const instance = instances[i].getData().metadata;
|
||||
for (let ii = 1; ii < n; ++ii) {
|
||||
const instance = instances[ii].getData().metadata;
|
||||
const {
|
||||
Rows,
|
||||
Columns,
|
||||
@@ -55,67 +74,146 @@ function processSingleframe(instances) {
|
||||
ImageOrientationPatient,
|
||||
} = instance;
|
||||
|
||||
if (
|
||||
Rows !== firstImageRows ||
|
||||
Columns !== firstImageColumns ||
|
||||
SamplesPerPixel !== firstImageSamplesPerPixel ||
|
||||
!_isSameOrientation(ImageOrientationPatient, firstImageOrientationPatient)
|
||||
) {
|
||||
return { value: false };
|
||||
if (Rows !== firstImageRows || Columns !== firstImageColumns) {
|
||||
reconstructionIssues.push(ReconstructionIssues.VARYING_IMAGESDIMENSIONS);
|
||||
} else if (SamplesPerPixel !== firstImageSamplesPerPixel) {
|
||||
reconstructionIssues.push(ReconstructionIssues.VARYING_IMAGESCOMPONENTS);
|
||||
} else if (!_isSameArray(ImageOrientationPatient, firstImageOrientationPatient)) {
|
||||
reconstructionIssues.push(ReconstructionIssues.VARYING_IMAGESORIENTATION);
|
||||
}
|
||||
|
||||
if (reconstructionIssues.length !== 0) {
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
// check if dataset is 4D
|
||||
if (_isDataset4D(instances)) {
|
||||
reconstructionIssues.push(ReconstructionIssues.DATASET_4D);
|
||||
}
|
||||
|
||||
return { value: reconstructionIssues.length === 0 ? true : false, reconstructionIssues };
|
||||
}
|
||||
|
||||
/**
|
||||
* Check is the spacing is uniform.
|
||||
* The input metadata array has to be ordered by image position.
|
||||
*
|
||||
* @param {Object[]} An array of `OHIFInstanceMetadata` objects.
|
||||
* @param {boolean} is the dataset 4D.
|
||||
*
|
||||
* @returns {Object} isUniform, reconstructionIssues and missingFrames
|
||||
*/
|
||||
function isSpacingUniform(instances, datasetIs4D) {
|
||||
const n = instances.length;
|
||||
const firstImage = instances[0].getData().metadata;
|
||||
const firstImagePositionPatient = firstImage.ImagePositionPatient;
|
||||
|
||||
const reconstructionIssues = [];
|
||||
let missingFrames = 0;
|
||||
|
||||
// Check if frame spacing is approximately equal within a spacingTolerance.
|
||||
// If spacing is on a uniform grid but we are missing frames,
|
||||
// Allow reconstruction, but pass back the number of missing frames.
|
||||
if (instances.length > 2) {
|
||||
const lastIpp = instances[instances.length - 1].getData().metadata
|
||||
if (n > 2) {
|
||||
const lastIpp = instances[n - 1].getData().metadata
|
||||
.ImagePositionPatient;
|
||||
|
||||
// We can't reconstruct if we are missing ImagePositionPatient values
|
||||
if (!firstImagePositionPatient || !lastIpp) {
|
||||
return { value: false };
|
||||
}
|
||||
if (firstImagePositionPatient && lastIpp) {
|
||||
const averageSpacingBetweenFrames =
|
||||
_getPerpendicularDistance(firstImagePositionPatient, lastIpp) /
|
||||
(n - 1);
|
||||
|
||||
const averageSpacingBetweenFrames =
|
||||
_getPerpendicularDistance(firstImagePositionPatient, lastIpp) /
|
||||
(instances.length - 1);
|
||||
let previousImagePositionPatient = firstImagePositionPatient;
|
||||
|
||||
let previousImagePositionPatient = firstImagePositionPatient;
|
||||
for (let ii = 1; ii < n; ++ii) {
|
||||
const instance = instances[ii].getData().metadata;
|
||||
const { ImagePositionPatient } = instance;
|
||||
|
||||
for (let i = 1; i < instances.length; i++) {
|
||||
const instance = instances[i].getData().metadata;
|
||||
const { ImagePositionPatient } = instance;
|
||||
const spacingBetweenFrames = _getPerpendicularDistance(
|
||||
ImagePositionPatient,
|
||||
previousImagePositionPatient
|
||||
);
|
||||
|
||||
const spacingBetweenFrames = _getPerpendicularDistance(
|
||||
ImagePositionPatient,
|
||||
previousImagePositionPatient
|
||||
);
|
||||
const spacingIssue = _getSpacingIssue(
|
||||
spacingBetweenFrames,
|
||||
averageSpacingBetweenFrames
|
||||
);
|
||||
|
||||
if (spacingIssue) {
|
||||
const issue = spacingIssue.issue;
|
||||
|
||||
if (issue === reconstructionIssues.MISSING_FRAMES) {
|
||||
missingFrames += spacingIssue.missingFrames;
|
||||
} else if (issue === reconstructionIssues.IRREGULAR_SPACING) {
|
||||
return { value: false };
|
||||
if (datasetIs4D && spacingBetweenFrames < 1.e-3) {
|
||||
// the dataset is 4D, if the distance is zero, means that we are
|
||||
// checking the 4th dimension. Do not return, since we want still to
|
||||
// check the 3rd dimension spacing.
|
||||
continue;
|
||||
}
|
||||
}
|
||||
|
||||
previousImagePositionPatient = ImagePositionPatient;
|
||||
const spacingIssue = _getSpacingIssue(
|
||||
spacingBetweenFrames,
|
||||
averageSpacingBetweenFrames
|
||||
);
|
||||
|
||||
if (spacingIssue) {
|
||||
const issue = spacingIssue.issue;
|
||||
|
||||
if (issue === ReconstructionIssues.MISSING_FRAMES) {
|
||||
missingFrames += spacingIssue.missingFrames;
|
||||
} else if (issue === ReconstructionIssues.IRREGULAR_SPACING) {
|
||||
reconstructionIssues.push(issue);
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
previousImagePositionPatient = ImagePositionPatient;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return { value: true, missingFrames };
|
||||
return { isUniform: reconstructionIssues.length === 0 ? true : false, missingFrames, reconstructionIssues };
|
||||
}
|
||||
|
||||
function _isSameOrientation(iop1, iop2) {
|
||||
|
||||
/**
|
||||
* Check if 4D dataset.
|
||||
*
|
||||
* Assuming that slices at different time have the same position, here we just check if
|
||||
* there are multiple slices for the same ImagePositionPatient and disable MPR.
|
||||
*
|
||||
* A better heuristic would be checking 4D tags, e.g. the presence of multiple TemporalPositionIdentifier values.
|
||||
* However, some studies (e.g. https://github.com/OHIF/Viewers/issues/2113) do not have such tags.
|
||||
*
|
||||
* @param {Object[]} instances An array of `OHIFInstanceMetadata` objects.
|
||||
*
|
||||
* @returns {boolean} dataset4D value.
|
||||
*/
|
||||
function _isDataset4D(instances) {
|
||||
const n = instances.length;
|
||||
for (let ii = 0; ii < n; ++ii) {
|
||||
const instanceMetadataControl = instances[ii].getData().metadata;
|
||||
if (
|
||||
!instanceMetadataControl ||
|
||||
instanceMetadataControl === undefined ||
|
||||
!instanceMetadataControl.ImagePositionPatient ||
|
||||
instanceMetadataControl.ImagePositionPatient === undefined
|
||||
) {
|
||||
continue;
|
||||
}
|
||||
for (let jj = ii + 1; jj < n; ++jj) {
|
||||
const instanceMetadata = instances[jj].getData().metadata;
|
||||
if (
|
||||
!instanceMetadata ||
|
||||
instanceMetadata === undefined ||
|
||||
!instanceMetadata.ImagePositionPatient ||
|
||||
instanceMetadata.ImagePositionPatient === undefined
|
||||
) {
|
||||
continue;
|
||||
}
|
||||
|
||||
if (_isSameArray(instanceMetadataControl.ImagePositionPatient, instanceMetadata.ImagePositionPatient)) {
|
||||
return true;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return false;
|
||||
}
|
||||
|
||||
function _isSameArray(iop1, iop2) {
|
||||
if (iop1 === undefined || !iop2 === undefined) {
|
||||
return;
|
||||
}
|
||||
@@ -156,12 +254,12 @@ function _getSpacingIssue(spacing, averageSpacing) {
|
||||
|
||||
if (errorForEachSpacing < spacingTolerance * averageSpacing) {
|
||||
return {
|
||||
issue: reconstructionIssues.MISSING_FRAMES,
|
||||
issue: ReconstructionIssues.MISSING_FRAMES,
|
||||
missingFrames: numberOfSpacings - 1,
|
||||
};
|
||||
}
|
||||
|
||||
return { issue: reconstructionIssues.IRREGULAR_SPACING };
|
||||
return { issue: ReconstructionIssues.IRREGULAR_SPACING };
|
||||
}
|
||||
|
||||
function _getPerpendicularDistance(a, b) {
|
||||
@@ -173,7 +271,5 @@ function _getPerpendicularDistance(a, b) {
|
||||
}
|
||||
|
||||
const constructableModalities = ['MR', 'CT', 'PT', 'NM'];
|
||||
const reconstructionIssues = {
|
||||
MISSING_FRAMES: 'missingframes',
|
||||
IRREGULAR_SPACING: 'irregularspacing',
|
||||
};
|
||||
|
||||
export {isDisplaySetReconstructable, isSpacingUniform};
|
||||
@@ -45,13 +45,13 @@ import studyMetadataManager from './studyMetadataManager';
|
||||
* @param {string} referencedDisplaySet.studyInstanceUid
|
||||
* @param {Array} referencedDisplaySet.sopClassUids
|
||||
* @param {Study[]} studies Collection of studies
|
||||
* @param {object} logger
|
||||
* @param {object} snackbar
|
||||
* @returns void
|
||||
*/
|
||||
const loadAndCacheDerivedDisplaySets = (referencedDisplaySet, studies) => {
|
||||
async function loadAndCacheDerivedDisplaySets(referencedDisplaySet, studies, logger, snackbar) {
|
||||
const { StudyInstanceUID, SeriesInstanceUID } = referencedDisplaySet;
|
||||
|
||||
const promises = [];
|
||||
|
||||
const studyMetadata = studyMetadataManager.get(StudyInstanceUID);
|
||||
|
||||
if (!studyMetadata) {
|
||||
@@ -80,11 +80,10 @@ const loadAndCacheDerivedDisplaySets = (referencedDisplaySet, studies) => {
|
||||
});
|
||||
|
||||
// For each type, see if any are loaded, if not load the most recent.
|
||||
Object.keys(displaySetsPerModality).forEach(key => {
|
||||
await Promise.all(Object.keys(displaySetsPerModality).map(async (key) => {
|
||||
const displaySets = displaySetsPerModality[key];
|
||||
|
||||
const isLoaded = displaySets.some(displaySet => displaySet.isLoaded);
|
||||
|
||||
if (isLoaded) {
|
||||
return;
|
||||
}
|
||||
@@ -107,12 +106,34 @@ const loadAndCacheDerivedDisplaySets = (referencedDisplaySet, studies) => {
|
||||
}
|
||||
});
|
||||
|
||||
recentDisplaySet.isLoading = true;
|
||||
try {
|
||||
if (recentDisplaySet.hasOwnProperty('getSourceDisplaySet') &&
|
||||
typeof recentDisplaySet.getSourceDisplaySet === 'function') {
|
||||
await recentDisplaySet.getSourceDisplaySet(studies);
|
||||
} else {
|
||||
await recentDisplaySet.load(referencedDisplaySet, studies);
|
||||
}
|
||||
} catch (error) {
|
||||
recentDisplaySet.isLoaded = false;
|
||||
recentDisplaySet.loadError = true;
|
||||
logger.error({ error, message: error.message });
|
||||
snackbar.show({
|
||||
title: 'Error loading derived display set:',
|
||||
message: error.message,
|
||||
type: 'error',
|
||||
error,
|
||||
autoClose: false,
|
||||
});
|
||||
}
|
||||
}));
|
||||
|
||||
promises.push(recentDisplaySet.load(referencedDisplaySet, studies));
|
||||
});
|
||||
|
||||
return promises;
|
||||
/*
|
||||
* TODO: Improve the way we notify parts of the app
|
||||
* that depends on derived display sets to be loaded.
|
||||
* (Implement pubsub for better tracking of derived display sets)
|
||||
*/
|
||||
const event = new CustomEvent('deriveddisplaysetsloadedandcached');
|
||||
document.dispatchEvent(event);
|
||||
};
|
||||
|
||||
export default loadAndCacheDerivedDisplaySets;
|
||||
@@ -4,6 +4,7 @@ import str2ab from '../str2ab';
|
||||
import unpackOverlay from './unpackOverlay';
|
||||
|
||||
import errorHandler from '../../errorHandler';
|
||||
import getXHRRetryRequestHook from '../xhrRetryRequestHook';
|
||||
|
||||
export default async function fetchOverlayData(instance, server) {
|
||||
const OverlayDataPromises = [];
|
||||
@@ -69,6 +70,7 @@ async function _getOverlayData(tag, server) {
|
||||
url: server.wadoRoot, //BulkDataURI is absolute, so this isn't used
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
};
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
const options = {
|
||||
|
||||
@@ -3,6 +3,7 @@ import DICOMWeb from '../../DICOMWeb';
|
||||
import str2ab from '../str2ab';
|
||||
|
||||
import errorHandler from '../../errorHandler';
|
||||
import getXHRRetryRequestHook from '../xhrRetryRequestHook';
|
||||
|
||||
export default async function fetchPaletteColorLookupTableData(
|
||||
instance,
|
||||
@@ -141,6 +142,7 @@ function _getPaletteColor(server, paletteColorLookupTableData, lutDescriptor) {
|
||||
url: server.wadoRoot, //BulkDataURI is absolute, so this isn't used
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
errorInterceptor: errorHandler.getHTTPErrorHandler(),
|
||||
requestHooks: [getXHRRetryRequestHook()],
|
||||
};
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
const options = {
|
||||
|
||||
@@ -0,0 +1,9 @@
|
||||
const validNumber = val => {
|
||||
if (Array.isArray(val)) {
|
||||
return val.map(v => (v !== undefined ? Number(v) : v));
|
||||
} else {
|
||||
return val !== undefined ? Number(val) : val;
|
||||
}
|
||||
};
|
||||
|
||||
export default validNumber;
|
||||
@@ -0,0 +1,103 @@
|
||||
import retry from 'retry';
|
||||
|
||||
const defaultRetryOptions = {
|
||||
retries: 5,
|
||||
factor: 3,
|
||||
minTimeout: 1 * 1000,
|
||||
maxTimeout: 60 * 1000,
|
||||
randomize: true,
|
||||
retryableStatusCodes: [429, 500],
|
||||
};
|
||||
|
||||
let retryOptions = { ...defaultRetryOptions };
|
||||
|
||||
/**
|
||||
* Request hook used to add retry functionality to XHR requests.
|
||||
*
|
||||
* @param {XMLHttpRequest} request XHR request instance
|
||||
* @param {object} metadata Metadata about the request
|
||||
* @param {object} metadata.url URL
|
||||
* @param {object} metadata.method HTTP method
|
||||
* @returns {XMLHttpRequest} request instance optionally modified
|
||||
*/
|
||||
const xhrRetryRequestHook = (request, metadata) => {
|
||||
const { url, method } = metadata;
|
||||
|
||||
function faultTolerantRequestSend(...args) {
|
||||
const operation = retry.operation(retryOptions);
|
||||
|
||||
operation.attempt(function operationAttempt(currentAttempt) {
|
||||
const originalOnReadyStateChange = request.onreadystatechange;
|
||||
|
||||
/** Overriding/extending XHR function */
|
||||
request.onreadystatechange = function onReadyStateChange(...args) {
|
||||
originalOnReadyStateChange.apply(request, args);
|
||||
|
||||
if (retryOptions.retryableStatusCodes.includes(request.status)) {
|
||||
const errorMessage = `Attempt to request ${url} failed.`;
|
||||
const attemptFailedError = new Error(errorMessage);
|
||||
operation.retry(attemptFailedError);
|
||||
}
|
||||
};
|
||||
|
||||
/** Call open only on retry (after headers and other things were set in the xhr instance) */
|
||||
if (currentAttempt > 1) {
|
||||
console.warn(`Requesting ${url}... (attempt: ${currentAttempt})`);
|
||||
request.open(method, url, true);
|
||||
}
|
||||
});
|
||||
|
||||
originalRequestSend.apply(request, args);
|
||||
}
|
||||
|
||||
/** Overriding/extending XHR function */
|
||||
const originalRequestSend = request.send;
|
||||
request.send = faultTolerantRequestSend;
|
||||
|
||||
return request;
|
||||
};
|
||||
|
||||
/**
|
||||
* Returns a configured retry request hook function
|
||||
* that can be used to add retry functionality to XHR request.
|
||||
*
|
||||
* Default options:
|
||||
* retries: 5
|
||||
* factor: 3
|
||||
* minTimeout: 1 * 1000
|
||||
* maxTimeout: 60 * 1000
|
||||
* randomize: true
|
||||
*
|
||||
* @param {object} options
|
||||
* @param {number} options.retires number of retries
|
||||
* @param {number} options.factor factor
|
||||
* @param {number} options.minTimeout the min timeout
|
||||
* @param {number} options.maxTimeout the max timeout
|
||||
* @param {boolean} options.randomize randomize
|
||||
* @param {array} options.retryableStatusCodes status codes that can trigger retry
|
||||
* @returns {function} the configured retry request function
|
||||
*/
|
||||
export const getXHRRetryRequestHook = (options = {}) => {
|
||||
retryOptions = { ...defaultRetryOptions };
|
||||
if ('retries' in options) {
|
||||
retryOptions.retries = options.retries;
|
||||
}
|
||||
if ('factor' in options) {
|
||||
retryOptions.factor = options.factor;
|
||||
}
|
||||
if ('minTimeout' in options) {
|
||||
retryOptions.minTimeout = options.minTimeout;
|
||||
}
|
||||
if ('maxTimeout' in options) {
|
||||
retryOptions.maxTimeout = options.maxTimeout;
|
||||
}
|
||||
if ('randomize' in options) {
|
||||
retryOptions.randomize = options.randomize;
|
||||
}
|
||||
if ('retryableStatusCodes' in options) {
|
||||
retryOptions.retryableStatusCodes = options.retryableStatusCodes;
|
||||
}
|
||||
return xhrRetryRequestHook;
|
||||
};
|
||||
|
||||
export default getXHRRetryRequestHook;
|
||||
@@ -3,6 +3,41 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.9.2](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.9.1...@ohif/ui@1.9.2) (2021-05-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/ui
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.9.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.9.0...@ohif/ui@1.9.1) (2021-03-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/ui
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.9.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.8.2...@ohif/ui@1.9.0) (2021-03-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **log:** add new log service ([14d6454](https://github.com/OHIF/Viewers/commit/14d6454eafaa2ccb50e133c2945c9558052ea27e))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.8.2](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.8.1...@ohif/ui@1.8.2) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/ui
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.8.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.8.0...@ohif/ui@1.8.1) (2021-01-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/ui
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/ui",
|
||||
"version": "1.8.1",
|
||||
"version": "1.9.2",
|
||||
"description": "A set of React components for Medical Imaging Viewers",
|
||||
"author": "OHIF Contributors",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -32,6 +32,10 @@
|
||||
max-height: 90vh;
|
||||
overflow-y: auto;
|
||||
|
||||
&.noScroll &__content {
|
||||
overflow: hidden;
|
||||
}
|
||||
|
||||
&:not(.visibleScrollbar) &__content
|
||||
overflow-x: hidden;
|
||||
scrollbar-width: none;
|
||||
|
||||
@@ -3,6 +3,7 @@ import './ImageThumbnail.styl';
|
||||
|
||||
import { utils } from '@ohif/core';
|
||||
import React, { useState, useEffect, createRef } from 'react';
|
||||
import classNames from 'classnames';
|
||||
|
||||
import PropTypes from 'prop-types';
|
||||
import ViewportErrorIndicator from '../../viewer/ViewportErrorIndicator';
|
||||
@@ -15,6 +16,7 @@ import ViewportLoadingIndicator from '../../viewer/ViewportLoadingIndicator';
|
||||
//import cornerstone from 'cornerstone-core';
|
||||
function ImageThumbnail(props) {
|
||||
const {
|
||||
active,
|
||||
width,
|
||||
height,
|
||||
imageSrc,
|
||||
@@ -97,7 +99,7 @@ function ImageThumbnail(props) {
|
||||
}, [fetchImagePromise, image.imageId, imageId, purgeCancelablePromise, setImagePromise]);
|
||||
|
||||
return (
|
||||
<div className="ImageThumbnail">
|
||||
<div className={classNames('ImageThumbnail', { active: active })}>
|
||||
<div className="image-thumbnail-canvas">
|
||||
{shouldRenderToCanvas() ? (
|
||||
<canvas ref={canvasRef} width={width} height={height} />
|
||||
@@ -126,6 +128,7 @@ function ImageThumbnail(props) {
|
||||
}
|
||||
|
||||
ImageThumbnail.propTypes = {
|
||||
active: PropTypes.bool,
|
||||
imageSrc: PropTypes.string,
|
||||
imageId: PropTypes.string,
|
||||
error: PropTypes.bool,
|
||||
@@ -135,6 +138,7 @@ ImageThumbnail.propTypes = {
|
||||
};
|
||||
|
||||
ImageThumbnail.defaultProps = {
|
||||
active: false,
|
||||
error: false,
|
||||
stackPercentComplete: 0,
|
||||
width: 217,
|
||||
|
||||
@@ -6,7 +6,7 @@
|
||||
--sidebar-transition: all 0.3s ease;
|
||||
}
|
||||
|
||||
.ThumbnailEntry.active .ImageThumbnail
|
||||
.ImageThumbnail.active
|
||||
border-color: var(--active-color);
|
||||
box-shadow: none
|
||||
transition: var(--sidebar-transition);
|
||||
@@ -14,7 +14,7 @@
|
||||
.ImageThumbnail
|
||||
background-color: var(--primary-background-color);
|
||||
box-shadow: inset 0 0 0 1px var(--ui-border-color-dark);
|
||||
border: 5px solid transparent
|
||||
border: 2px solid transparent
|
||||
border-radius: 12px
|
||||
height: 135px
|
||||
margin: 0 auto
|
||||
|
||||
@@ -20,6 +20,7 @@ function StudyBrowser(props) {
|
||||
return study.thumbnails.map((thumb, thumbIndex) => {
|
||||
// TODO: Thumb has more props than we care about?
|
||||
const {
|
||||
active,
|
||||
altImageText,
|
||||
displaySetInstanceUID,
|
||||
imageId,
|
||||
@@ -28,6 +29,7 @@ function StudyBrowser(props) {
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
stackPercentComplete,
|
||||
hasWarnings,
|
||||
} = thumb;
|
||||
|
||||
return (
|
||||
@@ -37,6 +39,7 @@ function StudyBrowser(props) {
|
||||
data-cy="thumbnail-list"
|
||||
>
|
||||
<Thumbnail
|
||||
active={active}
|
||||
supportsDrag={supportsDrag}
|
||||
key={`${studyIndex}_${thumbIndex}`}
|
||||
id={`${studyIndex}_${thumbIndex}`} // Unused?
|
||||
@@ -50,6 +53,7 @@ function StudyBrowser(props) {
|
||||
numImageFrames={numImageFrames}
|
||||
SeriesDescription={SeriesDescription}
|
||||
SeriesNumber={SeriesNumber}
|
||||
hasWarnings={hasWarnings}
|
||||
stackPercentComplete={stackPercentComplete}
|
||||
// Events
|
||||
onClick={onThumbnailClick.bind(
|
||||
|
||||
@@ -1,8 +1,11 @@
|
||||
import React from 'react';
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { useDrag } from 'react-dnd';
|
||||
import ImageThumbnail from './ImageThumbnail';
|
||||
import classNames from 'classnames';
|
||||
import { Icon } from './../../elements/Icon';
|
||||
import { Tooltip } from './../tooltip';
|
||||
import { OverlayTrigger } from './../overlayTrigger';
|
||||
|
||||
import './Thumbnail.styl';
|
||||
|
||||
@@ -11,7 +14,22 @@ function ThumbnailFooter({
|
||||
SeriesNumber,
|
||||
InstanceNumber,
|
||||
numImageFrames,
|
||||
hasWarnings
|
||||
}) {
|
||||
const [inconsistencyWarnings, inconsistencyWarningsSet] = useState([]);
|
||||
|
||||
useEffect(() => {
|
||||
let unmounted = false
|
||||
hasWarnings.then(response => {
|
||||
if (!unmounted) {
|
||||
inconsistencyWarningsSet(response)
|
||||
}
|
||||
})
|
||||
return () => {
|
||||
unmounted = true
|
||||
}
|
||||
}, [])
|
||||
|
||||
const infoOnly = !SeriesDescription;
|
||||
|
||||
const getInfo = (value, icon, className = '') => {
|
||||
@@ -22,28 +40,73 @@ function ThumbnailFooter({
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
const getWarningContent = (inconsistencyWarnings) => {
|
||||
if (Array.isArray(inconsistencyWarnings)) {
|
||||
const listedWarnings = inconsistencyWarnings.map((warn, index) => {
|
||||
return <li key={index}>{warn}</li>;
|
||||
});
|
||||
|
||||
return <ol>{listedWarnings}</ol>;
|
||||
} else {
|
||||
return <React.Fragment>{inconsistencyWarnings}</React.Fragment>;
|
||||
}
|
||||
};
|
||||
|
||||
const getWarningInfo = (SeriesNumber, inconsistencyWarnings) => {
|
||||
return(
|
||||
<React.Fragment>
|
||||
{inconsistencyWarnings && inconsistencyWarnings.length != 0 ? (
|
||||
<OverlayTrigger
|
||||
key={SeriesNumber}
|
||||
placement="left"
|
||||
overlay={
|
||||
<Tooltip
|
||||
placement="left"
|
||||
className="in tooltip-warning"
|
||||
id="tooltip-left"
|
||||
>
|
||||
<div className="warningTitle">Series Inconsistencies</div>
|
||||
<div className="warningContent">{getWarningContent(inconsistencyWarnings)}</div>
|
||||
</Tooltip>
|
||||
}
|
||||
>
|
||||
<div className={classNames('warning')}>
|
||||
<span className="warning-icon">
|
||||
<Icon name="exclamation-triangle" />
|
||||
</span>
|
||||
</div>
|
||||
</OverlayTrigger>
|
||||
) : (
|
||||
<React.Fragment></React.Fragment>
|
||||
)}
|
||||
</React.Fragment>
|
||||
);
|
||||
};
|
||||
const getSeriesInformation = (
|
||||
SeriesNumber,
|
||||
InstanceNumber,
|
||||
numImageFrames
|
||||
numImageFrames,
|
||||
inconsistencyWarnings
|
||||
) => {
|
||||
if (!SeriesNumber && !InstanceNumber && !numImageFrames) {
|
||||
return;
|
||||
}
|
||||
|
||||
return (
|
||||
const seriesInformation =
|
||||
<div className="series-information">
|
||||
{getInfo(SeriesNumber, 'S:')}
|
||||
{getInfo(InstanceNumber, 'I:')}
|
||||
{getInfo(numImageFrames, '', 'image-frames')}
|
||||
{getWarningInfo(SeriesNumber, inconsistencyWarnings)}
|
||||
</div>
|
||||
);
|
||||
|
||||
return (seriesInformation);
|
||||
};
|
||||
|
||||
return (
|
||||
<div className={classNames('series-details', { 'info-only': infoOnly })}>
|
||||
<div className="series-description">{SeriesDescription}</div>
|
||||
{getSeriesInformation(SeriesNumber, InstanceNumber, numImageFrames)}
|
||||
{getSeriesInformation(SeriesNumber, InstanceNumber, numImageFrames, inconsistencyWarnings)}
|
||||
</div>
|
||||
);
|
||||
}
|
||||
@@ -60,6 +123,7 @@ function Thumbnail(props) {
|
||||
numImageFrames,
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
hasWarnings,
|
||||
stackPercentComplete,
|
||||
StudyInstanceUID,
|
||||
onClick,
|
||||
@@ -95,6 +159,7 @@ function Thumbnail(props) {
|
||||
{/* SHOW IMAGE */}
|
||||
{hasImage && (
|
||||
<ImageThumbnail
|
||||
active={active}
|
||||
imageSrc={imageSrc}
|
||||
imageId={imageId}
|
||||
error={error}
|
||||
@@ -126,13 +191,14 @@ Thumbnail.propTypes = {
|
||||
stackPercentComplete: PropTypes.number,
|
||||
/**
|
||||
altImageText will be used when no imageId or imageSrc is provided.
|
||||
It will be displayed inside the <div>. This is useful when it is difficult
|
||||
It will be displayed inside the <div>. This is useful when it is difficult
|
||||
to make a preview for a type of DICOM series (e.g. DICOM-SR)
|
||||
*/
|
||||
altImageText: PropTypes.string,
|
||||
SeriesDescription: PropTypes.string,
|
||||
SeriesNumber: PropTypes.oneOfType([PropTypes.string, PropTypes.number]),
|
||||
InstanceNumber: PropTypes.oneOfType([PropTypes.string, PropTypes.number]),
|
||||
hasWarnings: PropTypes.instanceOf(Promise),
|
||||
numImageFrames: PropTypes.number,
|
||||
onDoubleClick: PropTypes.func,
|
||||
onClick: PropTypes.func,
|
||||
|
||||
@@ -2,8 +2,15 @@
|
||||
|
||||
:root {
|
||||
--series-count-background-color: #678696;
|
||||
--active-color: #20A5D6;
|
||||
}
|
||||
|
||||
.thumbnail.active
|
||||
.alt-image-text
|
||||
border-color: var(--active-color);
|
||||
box-shadow: none
|
||||
transition: var(--sidebar-transition);
|
||||
|
||||
.thumbnail
|
||||
cursor: pointer
|
||||
display: table
|
||||
@@ -16,7 +23,7 @@
|
||||
justify-content: center;
|
||||
background-color: var(--primary-background-color);
|
||||
box-shadow: inset 0 0 0 1px var(--ui-border-color-dark);
|
||||
border: 5px solid transparent;
|
||||
border: 2px solid transparent;
|
||||
border-radius: 12px;
|
||||
height: 135px;
|
||||
margin: 0 auto;
|
||||
@@ -78,6 +85,17 @@
|
||||
height: 11px
|
||||
width: 11px
|
||||
|
||||
.warning
|
||||
margin: auto 0;
|
||||
opacity: 1
|
||||
color: #e29e4a;
|
||||
|
||||
svg
|
||||
width: 16px;
|
||||
height: 14px;
|
||||
pointer-events: inherit;
|
||||
|
||||
|
||||
.value
|
||||
color: var(--text-secondary-color);
|
||||
display: inline-block
|
||||
|
||||
@@ -0,0 +1,104 @@
|
||||
import React, { useState, createContext, useContext, useEffect } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
|
||||
const LoggerContext = createContext(null);
|
||||
const { Provider } = LoggerContext;
|
||||
|
||||
export const useLogger = () => useContext(LoggerContext);
|
||||
|
||||
const LoggerProvider = ({ children, service }) => {
|
||||
const [state, setState] = useState({
|
||||
errors: [],
|
||||
infos: [],
|
||||
});
|
||||
|
||||
useEffect(() => {
|
||||
const onErrorHandler = ({ error: errorObject, message }) => {
|
||||
error({ error: errorObject, message });
|
||||
};
|
||||
window.addEventListener('error', onErrorHandler);
|
||||
return () => {
|
||||
window.removeEventListener('error', onErrorHandler);
|
||||
};
|
||||
}, []);
|
||||
|
||||
/**
|
||||
* Logs an error
|
||||
*
|
||||
* @param {object} props { error, stack, message, displayOnConsole }
|
||||
* @returns void
|
||||
*/
|
||||
const error = ({
|
||||
error = {},
|
||||
stack = '',
|
||||
message = '',
|
||||
displayOnConsole = true,
|
||||
}) => {
|
||||
const errorObject = { error, stack, message, displayOnConsole };
|
||||
setState(state => ({ ...state, errors: [...state.errors, errorObject] }));
|
||||
|
||||
if (displayOnConsole) {
|
||||
console.error(error);
|
||||
}
|
||||
};
|
||||
|
||||
/**
|
||||
* Logs an info
|
||||
*
|
||||
* @param {object} props { message, displayOnConsole }
|
||||
* @returns void
|
||||
*/
|
||||
const info = ({ message = '', displayOnConsole = true }) => {
|
||||
setState(state => ({
|
||||
...state,
|
||||
infos: state.infos.push({ message, displayOnConsole }),
|
||||
}));
|
||||
|
||||
if (displayOnConsole) {
|
||||
console.info(message);
|
||||
}
|
||||
};
|
||||
|
||||
/**
|
||||
* Sets the implementation of a log service that can be used by extensions
|
||||
*
|
||||
* @returns void
|
||||
*/
|
||||
useEffect(() => {
|
||||
if (service) {
|
||||
service.setServiceImplementation({ error, info });
|
||||
}
|
||||
}, [error, service, info]);
|
||||
|
||||
return <Provider value={{ info, error, state }}>{children}</Provider>;
|
||||
};
|
||||
|
||||
/**
|
||||
* Higher Order Component to use the log methods through a Class Component
|
||||
*
|
||||
* @returns
|
||||
*/
|
||||
export const withLogger = Component => {
|
||||
return function WrappedComponent(props) {
|
||||
const { error, info, state } = useLogger();
|
||||
return <Component {...props} logger={{ error, info, state }} />;
|
||||
};
|
||||
};
|
||||
|
||||
LoggerProvider.defaultProps = {
|
||||
service: null,
|
||||
};
|
||||
|
||||
LoggerProvider.propTypes = {
|
||||
children: PropTypes.oneOfType([
|
||||
PropTypes.arrayOf(PropTypes.node),
|
||||
PropTypes.node,
|
||||
]).isRequired,
|
||||
service: PropTypes.shape({
|
||||
setServiceImplementation: PropTypes.func,
|
||||
}),
|
||||
};
|
||||
|
||||
export default LoggerProvider;
|
||||
|
||||
export const LogConsumer = LoggerContext.Consumer;
|
||||
@@ -82,14 +82,20 @@ const ModalProvider = ({ children, modal: Modal, service }) => {
|
||||
shouldCloseOnEsc,
|
||||
fullscreen,
|
||||
closeButton,
|
||||
showScrollbar
|
||||
showScrollbar,
|
||||
noScroll,
|
||||
} = options;
|
||||
|
||||
return (
|
||||
<Provider value={{ show, hide }}>
|
||||
{ModalContent && (
|
||||
<Modal
|
||||
className={classNames(customClassName, ModalContent.className, { 'visibleScrollbar': showScrollbar })}
|
||||
className={classNames(
|
||||
customClassName,
|
||||
ModalContent.className,
|
||||
{ visibleScrollbar: showScrollbar },
|
||||
{ noScroll }
|
||||
)}
|
||||
shouldCloseOnEsc={shouldCloseOnEsc}
|
||||
isOpen={isOpen}
|
||||
title={title}
|
||||
|
||||
@@ -18,3 +18,8 @@ export {
|
||||
withDialog,
|
||||
useDialog,
|
||||
} from './DialogProvider.js';
|
||||
export {
|
||||
default as LoggerProvider,
|
||||
withLogger,
|
||||
useLogger,
|
||||
} from './LoggerProvider.js';
|
||||
@@ -28,7 +28,13 @@ class Range extends Component {
|
||||
className="range"
|
||||
/>
|
||||
{this.props.showPercentage && <span>{`${this.state.value}%`}</span>}
|
||||
{this.props.showValue && <span>{this.state.value}</span>}
|
||||
{this.props.showValue && (
|
||||
<span>
|
||||
{this.props.valueRenderer
|
||||
? this.props.valueRenderer(this.state.value)
|
||||
: this.state.value}
|
||||
</span>
|
||||
)}
|
||||
</>
|
||||
);
|
||||
}
|
||||
@@ -40,6 +46,7 @@ Range.propTypes = {
|
||||
max: PropTypes.number.isRequired,
|
||||
step: PropTypes.number,
|
||||
id: PropTypes.string,
|
||||
valueRenderer: PropTypes.func,
|
||||
onChange: PropTypes.func,
|
||||
showPercentage: PropTypes.bool,
|
||||
showValue: PropTypes.bool,
|
||||
|
||||
@@ -30,7 +30,7 @@ import {
|
||||
AboutContent,
|
||||
OHIFModal,
|
||||
ErrorBoundary,
|
||||
ErrorPage
|
||||
ErrorPage,
|
||||
} from './components';
|
||||
import { useDebounce, useMedia } from './hooks';
|
||||
|
||||
@@ -66,6 +66,9 @@ import {
|
||||
ModalConsumer,
|
||||
useModal,
|
||||
withModal,
|
||||
LoggerProvider,
|
||||
withLogger,
|
||||
useLogger,
|
||||
} from './contextProviders';
|
||||
|
||||
export {
|
||||
@@ -127,11 +130,14 @@ export {
|
||||
useDialog,
|
||||
ErrorBoundary,
|
||||
ErrorPage,
|
||||
LoggerProvider,
|
||||
withLogger,
|
||||
useLogger,
|
||||
// Hooks
|
||||
useDebounce,
|
||||
useMedia,
|
||||
// Utils
|
||||
ViewerbaseDragDropContext,
|
||||
asyncComponent,
|
||||
retryImport
|
||||
retryImport,
|
||||
};
|
||||
@@ -41,6 +41,13 @@ module.exports = (env, argv) => {
|
||||
path: DIST_DIR,
|
||||
filename: isProdBuild ? '[name].bundle.[chunkhash].js' : '[name].js',
|
||||
publicPath: PUBLIC_URL, // Used by HtmlWebPackPlugin for asset prefix
|
||||
devtoolModuleFilenameTemplate: function(info) {
|
||||
if (isProdBuild) {
|
||||
return `webpack:///${info.resourcePath}`;
|
||||
} else {
|
||||
return 'file:///' + encodeURI(info.absoluteResourcePath);
|
||||
}
|
||||
},
|
||||
},
|
||||
module: {
|
||||
rules: [...extractStyleChunksRule(isProdBuild)],
|
||||
|
||||
@@ -3,6 +3,235 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [4.9.22](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.21...@ohif/viewer@4.9.22) (2021-08-19)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* Remove internet dependency for workbox (addressing [#2109](https://github.com/OHIF/Viewers/issues/2109)) ([#2151](https://github.com/OHIF/Viewers/issues/2151)) ([5f92f6e](https://github.com/OHIF/Viewers/commit/5f92f6ec7faa11d3fdc33ef8f22971a0bab87a36))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.21](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.20...@ohif/viewer@4.9.21) (2021-07-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.20](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.19...@ohif/viewer@4.9.20) (2021-06-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.19](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.18...@ohif/viewer@4.9.19) (2021-06-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.18](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.17...@ohif/viewer@4.9.18) (2021-06-02)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **dicom-html:** Add parsed dicom meta info section ([#2419](https://github.com/OHIF/Viewers/issues/2419)) ([403688b](https://github.com/OHIF/Viewers/commit/403688b18c52468fc1101166ec0c1734fb710039))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.17](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.16...@ohif/viewer@4.9.17) (2021-05-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.16](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.15...@ohif/viewer@4.9.16) (2021-05-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.15](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.14...@ohif/viewer@4.9.15) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.14](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.13...@ohif/viewer@4.9.14) (2021-04-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.13](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.12...@ohif/viewer@4.9.13) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.12](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.11...@ohif/viewer@4.9.12) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.11](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.10...@ohif/viewer@4.9.11) (2021-04-21)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.10](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.9...@ohif/viewer@4.9.10) (2021-04-16)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.9](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.8...@ohif/viewer@4.9.9) (2021-04-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.8](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.7...@ohif/viewer@4.9.8) (2021-03-31)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.7](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.6...@ohif/viewer@4.9.7) (2021-03-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.6](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.5...@ohif/viewer@4.9.6) (2021-03-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.5](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.4...@ohif/viewer@4.9.5) (2021-03-25)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* IDC-2288: Update toolbar tabs after derived displayset loaded ([#2307](https://github.com/OHIF/Viewers/issues/2307)) ([6e723eb](https://github.com/OHIF/Viewers/commit/6e723ebced58852007ca553792c740976cfc4201))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.4](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.3...@ohif/viewer@4.9.4) (2021-03-19)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.3](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.2...@ohif/viewer@4.9.3) (2021-03-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.2](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.1...@ohif/viewer@4.9.2) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.9.1](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.9.0...@ohif/viewer@4.9.1) (2021-03-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [4.9.0](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.8.12...@ohif/viewer@4.9.0) (2021-03-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **log:** add new log service ([14d6454](https://github.com/OHIF/Viewers/commit/14d6454eafaa2ccb50e133c2945c9558052ea27e))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.8.12](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.8.11...@ohif/viewer@4.8.12) (2021-03-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.8.11](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.8.10...@ohif/viewer@4.8.11) (2021-02-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.8.10](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.8.9...@ohif/viewer@4.8.10) (2021-02-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.8.9](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.8.8...@ohif/viewer@4.8.9) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.8.8](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.8.7...@ohif/viewer@4.8.8) (2021-02-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
@@ -91,7 +91,7 @@ describe('OHIF Cornerstone Hotkeys', () => {
|
||||
':nth-child(2) > .viewport-wrapper > .viewport-element > .ViewportOrientationMarkers.noselect > .left-mid.orientation-marker'
|
||||
).as('viewport2InfoMidLeft');
|
||||
cy.get(
|
||||
':nth-child(2) > .viewport-wrapper > .viewport-element > .ViewportOverlay > div.bottom-right.overlay-element > div'
|
||||
':nth-child(2) > .viewport-wrapper > .viewport-element > .OHIFCornerstoneViewportOverlay > div.bottom-right.overlay-element > div'
|
||||
).as('viewport2InfoBottomRight');
|
||||
|
||||
// Press multiples hotkeys on viewport #2
|
||||
|
||||
@@ -741,7 +741,7 @@ describe('OHIF User Preferences', () => {
|
||||
|
||||
// Overlay information from 2nd viewport
|
||||
let second_viewport_overlay =
|
||||
'div:nth-child(2) > div > div.viewport-element > div.ViewportOverlay > div.bottom-right.overlay-element > div';
|
||||
'div:nth-child(2) > div > div.viewport-element > div.OHIFCornerstoneViewportOverlay > div.bottom-right.overlay-element > div';
|
||||
|
||||
// Shift active viewport to Viewport #2
|
||||
cy.get('body').type('{rightarrow}');
|
||||
|
||||
@@ -25,10 +25,10 @@ export function initCommonElementsAliases() {
|
||||
'.pull-left > .RoundedButtonGroup > .roundedButtonWrapper > .roundedButton'
|
||||
).as('seriesBtn');
|
||||
cy.get('section.sidepanel.from-left').as('seriesPanel');
|
||||
cy.get('div.ViewportOverlay > div.bottom-left.overlay-element > div').as(
|
||||
cy.get('div.OHIFCornerstoneViewportOverlay > div.bottom-left.overlay-element > div').as(
|
||||
'viewportInfoBottomLeft'
|
||||
);
|
||||
cy.get('div.ViewportOverlay > div.bottom-right.overlay-element > div').as(
|
||||
cy.get('div.OHIFCornerstoneViewportOverlay > div.bottom-right.overlay-element > div').as(
|
||||
'viewportInfoBottomRight'
|
||||
);
|
||||
cy.get('.left-mid.orientation-marker').as('viewportInfoMidLeft');
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/viewer",
|
||||
"version": "4.8.8",
|
||||
"version": "4.9.22",
|
||||
"description": "OHIF Viewer",
|
||||
"author": "OHIF Contributors",
|
||||
"license": "MIT",
|
||||
@@ -49,18 +49,18 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"@ohif/core": "^2.12.2",
|
||||
"@ohif/extension-cornerstone": "^2.10.1",
|
||||
"@ohif/extension-debugging": "^0.1.6",
|
||||
"@ohif/extension-dicom-html": "^1.3.1",
|
||||
"@ohif/extension-dicom-microscopy": "^0.51.4",
|
||||
"@ohif/core": "^2.13.13",
|
||||
"@ohif/extension-cornerstone": "^2.10.10",
|
||||
"@ohif/extension-debugging": "^0.2.2",
|
||||
"@ohif/extension-dicom-html": "^1.3.10",
|
||||
"@ohif/extension-dicom-microscopy": "^0.52.0",
|
||||
"@ohif/extension-dicom-pdf": "^1.0.6",
|
||||
"@ohif/extension-dicom-rt": "^0.6.4",
|
||||
"@ohif/extension-dicom-segmentation": "^0.5.2",
|
||||
"@ohif/extension-dicom-rt": "^0.6.13",
|
||||
"@ohif/extension-dicom-segmentation": "^0.6.10",
|
||||
"@ohif/extension-lesion-tracker": "^0.2.1",
|
||||
"@ohif/extension-vtk": "^1.10.3",
|
||||
"@ohif/extension-vtk": "^1.11.14",
|
||||
"@ohif/i18n": "^0.53.0",
|
||||
"@ohif/ui": "^1.8.1",
|
||||
"@ohif/ui": "^1.9.2",
|
||||
"@tanem/react-nprogress": "^1.1.25",
|
||||
"classnames": "^2.2.6",
|
||||
"core-js": "^3.2.1",
|
||||
@@ -68,9 +68,9 @@
|
||||
"cornerstone-math": "^0.1.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dcmjs": "0.17.2",
|
||||
"dcmjs": "0.18.8",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"dicomweb-client": "^0.4.4",
|
||||
"dicomweb-client": "^0.8.1",
|
||||
"hammerjs": "^2.0.8",
|
||||
"i18next": "^17.0.3",
|
||||
"i18next-browser-languagedetector": "^3.0.1",
|
||||
|
||||
@@ -4,6 +4,7 @@ window.config = {
|
||||
extensions: [],
|
||||
showStudyList: true,
|
||||
filterQueryParam: false,
|
||||
disableServersCache: false,
|
||||
servers: {
|
||||
dicomWeb: [
|
||||
{
|
||||
|
||||
@@ -3,7 +3,17 @@
|
||||
// modules, so it's perfectly fine to serve this code to any browsers
|
||||
// (older browsers will just ignore it)
|
||||
//
|
||||
import { Workbox } from 'https://storage.googleapis.com/workbox-cdn/releases/5.0.0-beta.1/workbox-window.prod.mjs';
|
||||
|
||||
// The workbox code is locally stored and can be updated
|
||||
// by running `npx workbox-cli copyLibraries platform/viewer/public/third_party/workbox`
|
||||
// from the root directory.
|
||||
// Since the workbox version may change with copyLibraries ensure that the
|
||||
// right version is used here and in `service-worker.js`
|
||||
import { Workbox } from './third_party/workbox/workbox-v5.1.4/workbox-window.dev.mjs';
|
||||
|
||||
// Alternatively use the internet version by commenting out the above import and
|
||||
// replace with this line and do the corresponding change in service-worker.js
|
||||
// import { Workbox } from 'https://storage.googleapis.com/workbox-cdn/releases/5.0.0-beta.1/workbox-window.prod.mjs';
|
||||
|
||||
var supportsServiceWorker = 'serviceWorker' in navigator;
|
||||
var isNotLocalDevelopment =
|
||||
@@ -11,6 +21,7 @@ var isNotLocalDevelopment =
|
||||
|
||||
if (supportsServiceWorker && isNotLocalDevelopment) {
|
||||
const swFileLocation = (window.PUBLIC_URL || '/') + 'sw.js';
|
||||
|
||||
const wb = new Workbox(swFileLocation);
|
||||
|
||||
// Add an event listener to detect when the registered
|
||||
|
||||
+818
@@ -0,0 +1,818 @@
|
||||
this.workbox = this.workbox || {};
|
||||
this.workbox.backgroundSync = (function (exports, WorkboxError_js, logger_js, assert_js, getFriendlyURL_js, DBWrapper_js) {
|
||||
'use strict';
|
||||
|
||||
try {
|
||||
self['workbox:background-sync:5.1.4'] && _();
|
||||
} catch (e) {}
|
||||
|
||||
/*
|
||||
Copyright 2018 Google LLC
|
||||
|
||||
Use of this source code is governed by an MIT-style
|
||||
license that can be found in the LICENSE file or at
|
||||
https://opensource.org/licenses/MIT.
|
||||
*/
|
||||
const DB_VERSION = 3;
|
||||
const DB_NAME = 'workbox-background-sync';
|
||||
const OBJECT_STORE_NAME = 'requests';
|
||||
const INDEXED_PROP = 'queueName';
|
||||
/**
|
||||
* A class to manage storing requests from a Queue in IndexedDB,
|
||||
* indexed by their queue name for easier access.
|
||||
*
|
||||
* @private
|
||||
*/
|
||||
|
||||
class QueueStore {
|
||||
/**
|
||||
* Associates this instance with a Queue instance, so entries added can be
|
||||
* identified by their queue name.
|
||||
*
|
||||
* @param {string} queueName
|
||||
* @private
|
||||
*/
|
||||
constructor(queueName) {
|
||||
this._queueName = queueName;
|
||||
this._db = new DBWrapper_js.DBWrapper(DB_NAME, DB_VERSION, {
|
||||
onupgradeneeded: this._upgradeDb
|
||||
});
|
||||
}
|
||||
/**
|
||||
* Append an entry last in the queue.
|
||||
*
|
||||
* @param {Object} entry
|
||||
* @param {Object} entry.requestData
|
||||
* @param {number} [entry.timestamp]
|
||||
* @param {Object} [entry.metadata]
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
async pushEntry(entry) {
|
||||
{
|
||||
assert_js.assert.isType(entry, 'object', {
|
||||
moduleName: 'workbox-background-sync',
|
||||
className: 'QueueStore',
|
||||
funcName: 'pushEntry',
|
||||
paramName: 'entry'
|
||||
});
|
||||
assert_js.assert.isType(entry.requestData, 'object', {
|
||||
moduleName: 'workbox-background-sync',
|
||||
className: 'QueueStore',
|
||||
funcName: 'pushEntry',
|
||||
paramName: 'entry.requestData'
|
||||
});
|
||||
} // Don't specify an ID since one is automatically generated.
|
||||
|
||||
|
||||
delete entry.id;
|
||||
entry.queueName = this._queueName;
|
||||
await this._db.add(OBJECT_STORE_NAME, entry);
|
||||
}
|
||||
/**
|
||||
* Prepend an entry first in the queue.
|
||||
*
|
||||
* @param {Object} entry
|
||||
* @param {Object} entry.requestData
|
||||
* @param {number} [entry.timestamp]
|
||||
* @param {Object} [entry.metadata]
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
async unshiftEntry(entry) {
|
||||
{
|
||||
assert_js.assert.isType(entry, 'object', {
|
||||
moduleName: 'workbox-background-sync',
|
||||
className: 'QueueStore',
|
||||
funcName: 'unshiftEntry',
|
||||
paramName: 'entry'
|
||||
});
|
||||
assert_js.assert.isType(entry.requestData, 'object', {
|
||||
moduleName: 'workbox-background-sync',
|
||||
className: 'QueueStore',
|
||||
funcName: 'unshiftEntry',
|
||||
paramName: 'entry.requestData'
|
||||
});
|
||||
}
|
||||
|
||||
const [firstEntry] = await this._db.getAllMatching(OBJECT_STORE_NAME, {
|
||||
count: 1
|
||||
});
|
||||
|
||||
if (firstEntry) {
|
||||
// Pick an ID one less than the lowest ID in the object store.
|
||||
entry.id = firstEntry.id - 1;
|
||||
} else {
|
||||
// Otherwise let the auto-incrementor assign the ID.
|
||||
delete entry.id;
|
||||
}
|
||||
|
||||
entry.queueName = this._queueName;
|
||||
await this._db.add(OBJECT_STORE_NAME, entry);
|
||||
}
|
||||
/**
|
||||
* Removes and returns the last entry in the queue matching the `queueName`.
|
||||
*
|
||||
* @return {Promise<Object>}
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
async popEntry() {
|
||||
return this._removeEntry({
|
||||
direction: 'prev'
|
||||
});
|
||||
}
|
||||
/**
|
||||
* Removes and returns the first entry in the queue matching the `queueName`.
|
||||
*
|
||||
* @return {Promise<Object>}
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
async shiftEntry() {
|
||||
return this._removeEntry({
|
||||
direction: 'next'
|
||||
});
|
||||
}
|
||||
/**
|
||||
* Returns all entries in the store matching the `queueName`.
|
||||
*
|
||||
* @param {Object} options See {@link module:workbox-background-sync.Queue~getAll}
|
||||
* @return {Promise<Array<Object>>}
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
async getAll() {
|
||||
return await this._db.getAllMatching(OBJECT_STORE_NAME, {
|
||||
index: INDEXED_PROP,
|
||||
query: IDBKeyRange.only(this._queueName)
|
||||
});
|
||||
}
|
||||
/**
|
||||
* Deletes the entry for the given ID.
|
||||
*
|
||||
* WARNING: this method does not ensure the deleted enry belongs to this
|
||||
* queue (i.e. matches the `queueName`). But this limitation is acceptable
|
||||
* as this class is not publicly exposed. An additional check would make
|
||||
* this method slower than it needs to be.
|
||||
*
|
||||
* @private
|
||||
* @param {number} id
|
||||
*/
|
||||
|
||||
|
||||
async deleteEntry(id) {
|
||||
await this._db.delete(OBJECT_STORE_NAME, id);
|
||||
}
|
||||
/**
|
||||
* Removes and returns the first or last entry in the queue (based on the
|
||||
* `direction` argument) matching the `queueName`.
|
||||
*
|
||||
* @return {Promise<Object>}
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
async _removeEntry({
|
||||
direction
|
||||
}) {
|
||||
const [entry] = await this._db.getAllMatching(OBJECT_STORE_NAME, {
|
||||
direction,
|
||||
index: INDEXED_PROP,
|
||||
query: IDBKeyRange.only(this._queueName),
|
||||
count: 1
|
||||
});
|
||||
|
||||
if (entry) {
|
||||
await this.deleteEntry(entry.id);
|
||||
return entry;
|
||||
}
|
||||
}
|
||||
/**
|
||||
* Upgrades the database given an `upgradeneeded` event.
|
||||
*
|
||||
* @param {Event} event
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
_upgradeDb(event) {
|
||||
const db = event.target.result;
|
||||
|
||||
if (event.oldVersion > 0 && event.oldVersion < DB_VERSION) {
|
||||
if (db.objectStoreNames.contains(OBJECT_STORE_NAME)) {
|
||||
db.deleteObjectStore(OBJECT_STORE_NAME);
|
||||
}
|
||||
}
|
||||
|
||||
const objStore = db.createObjectStore(OBJECT_STORE_NAME, {
|
||||
autoIncrement: true,
|
||||
keyPath: 'id'
|
||||
});
|
||||
objStore.createIndex(INDEXED_PROP, INDEXED_PROP, {
|
||||
unique: false
|
||||
});
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
/*
|
||||
Copyright 2018 Google LLC
|
||||
|
||||
Use of this source code is governed by an MIT-style
|
||||
license that can be found in the LICENSE file or at
|
||||
https://opensource.org/licenses/MIT.
|
||||
*/
|
||||
const serializableProperties = ['method', 'referrer', 'referrerPolicy', 'mode', 'credentials', 'cache', 'redirect', 'integrity', 'keepalive'];
|
||||
/**
|
||||
* A class to make it easier to serialize and de-serialize requests so they
|
||||
* can be stored in IndexedDB.
|
||||
*
|
||||
* @private
|
||||
*/
|
||||
|
||||
class StorableRequest {
|
||||
/**
|
||||
* Accepts an object of request data that can be used to construct a
|
||||
* `Request` but can also be stored in IndexedDB.
|
||||
*
|
||||
* @param {Object} requestData An object of request data that includes the
|
||||
* `url` plus any relevant properties of
|
||||
* [requestInit]{@link https://fetch.spec.whatwg.org/#requestinit}.
|
||||
* @private
|
||||
*/
|
||||
constructor(requestData) {
|
||||
{
|
||||
assert_js.assert.isType(requestData, 'object', {
|
||||
moduleName: 'workbox-background-sync',
|
||||
className: 'StorableRequest',
|
||||
funcName: 'constructor',
|
||||
paramName: 'requestData'
|
||||
});
|
||||
assert_js.assert.isType(requestData.url, 'string', {
|
||||
moduleName: 'workbox-background-sync',
|
||||
className: 'StorableRequest',
|
||||
funcName: 'constructor',
|
||||
paramName: 'requestData.url'
|
||||
});
|
||||
} // If the request's mode is `navigate`, convert it to `same-origin` since
|
||||
// navigation requests can't be constructed via script.
|
||||
|
||||
|
||||
if (requestData['mode'] === 'navigate') {
|
||||
requestData['mode'] = 'same-origin';
|
||||
}
|
||||
|
||||
this._requestData = requestData;
|
||||
}
|
||||
/**
|
||||
* Converts a Request object to a plain object that can be structured
|
||||
* cloned or JSON-stringified.
|
||||
*
|
||||
* @param {Request} request
|
||||
* @return {Promise<StorableRequest>}
|
||||
*
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
static async fromRequest(request) {
|
||||
const requestData = {
|
||||
url: request.url,
|
||||
headers: {}
|
||||
}; // Set the body if present.
|
||||
|
||||
if (request.method !== 'GET') {
|
||||
// Use ArrayBuffer to support non-text request bodies.
|
||||
// NOTE: we can't use Blobs becuse Safari doesn't support storing
|
||||
// Blobs in IndexedDB in some cases:
|
||||
// https://github.com/dfahlander/Dexie.js/issues/618#issuecomment-398348457
|
||||
requestData.body = await request.clone().arrayBuffer();
|
||||
} // Convert the headers from an iterable to an object.
|
||||
|
||||
|
||||
for (const [key, value] of request.headers.entries()) {
|
||||
requestData.headers[key] = value;
|
||||
} // Add all other serializable request properties
|
||||
|
||||
|
||||
for (const prop of serializableProperties) {
|
||||
if (request[prop] !== undefined) {
|
||||
requestData[prop] = request[prop];
|
||||
}
|
||||
}
|
||||
|
||||
return new StorableRequest(requestData);
|
||||
}
|
||||
/**
|
||||
* Returns a deep clone of the instances `_requestData` object.
|
||||
*
|
||||
* @return {Object}
|
||||
*
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
toObject() {
|
||||
const requestData = Object.assign({}, this._requestData);
|
||||
requestData.headers = Object.assign({}, this._requestData.headers);
|
||||
|
||||
if (requestData.body) {
|
||||
requestData.body = requestData.body.slice(0);
|
||||
}
|
||||
|
||||
return requestData;
|
||||
}
|
||||
/**
|
||||
* Converts this instance to a Request.
|
||||
*
|
||||
* @return {Request}
|
||||
*
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
toRequest() {
|
||||
return new Request(this._requestData.url, this._requestData);
|
||||
}
|
||||
/**
|
||||
* Creates and returns a deep clone of the instance.
|
||||
*
|
||||
* @return {StorableRequest}
|
||||
*
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
clone() {
|
||||
return new StorableRequest(this.toObject());
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
/*
|
||||
Copyright 2018 Google LLC
|
||||
|
||||
Use of this source code is governed by an MIT-style
|
||||
license that can be found in the LICENSE file or at
|
||||
https://opensource.org/licenses/MIT.
|
||||
*/
|
||||
const TAG_PREFIX = 'workbox-background-sync';
|
||||
const MAX_RETENTION_TIME = 60 * 24 * 7; // 7 days in minutes
|
||||
|
||||
const queueNames = new Set();
|
||||
/**
|
||||
* Converts a QueueStore entry into the format exposed by Queue. This entails
|
||||
* converting the request data into a real request and omitting the `id` and
|
||||
* `queueName` properties.
|
||||
*
|
||||
* @param {Object} queueStoreEntry
|
||||
* @return {Object}
|
||||
* @private
|
||||
*/
|
||||
|
||||
const convertEntry = queueStoreEntry => {
|
||||
const queueEntry = {
|
||||
request: new StorableRequest(queueStoreEntry.requestData).toRequest(),
|
||||
timestamp: queueStoreEntry.timestamp
|
||||
};
|
||||
|
||||
if (queueStoreEntry.metadata) {
|
||||
queueEntry.metadata = queueStoreEntry.metadata;
|
||||
}
|
||||
|
||||
return queueEntry;
|
||||
};
|
||||
/**
|
||||
* A class to manage storing failed requests in IndexedDB and retrying them
|
||||
* later. All parts of the storing and replaying process are observable via
|
||||
* callbacks.
|
||||
*
|
||||
* @memberof module:workbox-background-sync
|
||||
*/
|
||||
|
||||
|
||||
class Queue {
|
||||
/**
|
||||
* Creates an instance of Queue with the given options
|
||||
*
|
||||
* @param {string} name The unique name for this queue. This name must be
|
||||
* unique as it's used to register sync events and store requests
|
||||
* in IndexedDB specific to this instance. An error will be thrown if
|
||||
* a duplicate name is detected.
|
||||
* @param {Object} [options]
|
||||
* @param {Function} [options.onSync] A function that gets invoked whenever
|
||||
* the 'sync' event fires. The function is invoked with an object
|
||||
* containing the `queue` property (referencing this instance), and you
|
||||
* can use the callback to customize the replay behavior of the queue.
|
||||
* When not set the `replayRequests()` method is called.
|
||||
* Note: if the replay fails after a sync event, make sure you throw an
|
||||
* error, so the browser knows to retry the sync event later.
|
||||
* @param {number} [options.maxRetentionTime=7 days] The amount of time (in
|
||||
* minutes) a request may be retried. After this amount of time has
|
||||
* passed, the request will be deleted from the queue.
|
||||
*/
|
||||
constructor(name, {
|
||||
onSync,
|
||||
maxRetentionTime
|
||||
} = {}) {
|
||||
this._syncInProgress = false;
|
||||
this._requestsAddedDuringSync = false; // Ensure the store name is not already being used
|
||||
|
||||
if (queueNames.has(name)) {
|
||||
throw new WorkboxError_js.WorkboxError('duplicate-queue-name', {
|
||||
name
|
||||
});
|
||||
} else {
|
||||
queueNames.add(name);
|
||||
}
|
||||
|
||||
this._name = name;
|
||||
this._onSync = onSync || this.replayRequests;
|
||||
this._maxRetentionTime = maxRetentionTime || MAX_RETENTION_TIME;
|
||||
this._queueStore = new QueueStore(this._name);
|
||||
|
||||
this._addSyncListener();
|
||||
}
|
||||
/**
|
||||
* @return {string}
|
||||
*/
|
||||
|
||||
|
||||
get name() {
|
||||
return this._name;
|
||||
}
|
||||
/**
|
||||
* Stores the passed request in IndexedDB (with its timestamp and any
|
||||
* metadata) at the end of the queue.
|
||||
*
|
||||
* @param {Object} entry
|
||||
* @param {Request} entry.request The request to store in the queue.
|
||||
* @param {Object} [entry.metadata] Any metadata you want associated with the
|
||||
* stored request. When requests are replayed you'll have access to this
|
||||
* metadata object in case you need to modify the request beforehand.
|
||||
* @param {number} [entry.timestamp] The timestamp (Epoch time in
|
||||
* milliseconds) when the request was first added to the queue. This is
|
||||
* used along with `maxRetentionTime` to remove outdated requests. In
|
||||
* general you don't need to set this value, as it's automatically set
|
||||
* for you (defaulting to `Date.now()`), but you can update it if you
|
||||
* don't want particular requests to expire.
|
||||
*/
|
||||
|
||||
|
||||
async pushRequest(entry) {
|
||||
{
|
||||
assert_js.assert.isType(entry, 'object', {
|
||||
moduleName: 'workbox-background-sync',
|
||||
className: 'Queue',
|
||||
funcName: 'pushRequest',
|
||||
paramName: 'entry'
|
||||
});
|
||||
assert_js.assert.isInstance(entry.request, Request, {
|
||||
moduleName: 'workbox-background-sync',
|
||||
className: 'Queue',
|
||||
funcName: 'pushRequest',
|
||||
paramName: 'entry.request'
|
||||
});
|
||||
}
|
||||
|
||||
await this._addRequest(entry, 'push');
|
||||
}
|
||||
/**
|
||||
* Stores the passed request in IndexedDB (with its timestamp and any
|
||||
* metadata) at the beginning of the queue.
|
||||
*
|
||||
* @param {Object} entry
|
||||
* @param {Request} entry.request The request to store in the queue.
|
||||
* @param {Object} [entry.metadata] Any metadata you want associated with the
|
||||
* stored request. When requests are replayed you'll have access to this
|
||||
* metadata object in case you need to modify the request beforehand.
|
||||
* @param {number} [entry.timestamp] The timestamp (Epoch time in
|
||||
* milliseconds) when the request was first added to the queue. This is
|
||||
* used along with `maxRetentionTime` to remove outdated requests. In
|
||||
* general you don't need to set this value, as it's automatically set
|
||||
* for you (defaulting to `Date.now()`), but you can update it if you
|
||||
* don't want particular requests to expire.
|
||||
*/
|
||||
|
||||
|
||||
async unshiftRequest(entry) {
|
||||
{
|
||||
assert_js.assert.isType(entry, 'object', {
|
||||
moduleName: 'workbox-background-sync',
|
||||
className: 'Queue',
|
||||
funcName: 'unshiftRequest',
|
||||
paramName: 'entry'
|
||||
});
|
||||
assert_js.assert.isInstance(entry.request, Request, {
|
||||
moduleName: 'workbox-background-sync',
|
||||
className: 'Queue',
|
||||
funcName: 'unshiftRequest',
|
||||
paramName: 'entry.request'
|
||||
});
|
||||
}
|
||||
|
||||
await this._addRequest(entry, 'unshift');
|
||||
}
|
||||
/**
|
||||
* Removes and returns the last request in the queue (along with its
|
||||
* timestamp and any metadata). The returned object takes the form:
|
||||
* `{request, timestamp, metadata}`.
|
||||
*
|
||||
* @return {Promise<Object>}
|
||||
*/
|
||||
|
||||
|
||||
async popRequest() {
|
||||
return this._removeRequest('pop');
|
||||
}
|
||||
/**
|
||||
* Removes and returns the first request in the queue (along with its
|
||||
* timestamp and any metadata). The returned object takes the form:
|
||||
* `{request, timestamp, metadata}`.
|
||||
*
|
||||
* @return {Promise<Object>}
|
||||
*/
|
||||
|
||||
|
||||
async shiftRequest() {
|
||||
return this._removeRequest('shift');
|
||||
}
|
||||
/**
|
||||
* Returns all the entries that have not expired (per `maxRetentionTime`).
|
||||
* Any expired entries are removed from the queue.
|
||||
*
|
||||
* @return {Promise<Array<Object>>}
|
||||
*/
|
||||
|
||||
|
||||
async getAll() {
|
||||
const allEntries = await this._queueStore.getAll();
|
||||
const now = Date.now();
|
||||
const unexpiredEntries = [];
|
||||
|
||||
for (const entry of allEntries) {
|
||||
// Ignore requests older than maxRetentionTime. Call this function
|
||||
// recursively until an unexpired request is found.
|
||||
const maxRetentionTimeInMs = this._maxRetentionTime * 60 * 1000;
|
||||
|
||||
if (now - entry.timestamp > maxRetentionTimeInMs) {
|
||||
await this._queueStore.deleteEntry(entry.id);
|
||||
} else {
|
||||
unexpiredEntries.push(convertEntry(entry));
|
||||
}
|
||||
}
|
||||
|
||||
return unexpiredEntries;
|
||||
}
|
||||
/**
|
||||
* Adds the entry to the QueueStore and registers for a sync event.
|
||||
*
|
||||
* @param {Object} entry
|
||||
* @param {Request} entry.request
|
||||
* @param {Object} [entry.metadata]
|
||||
* @param {number} [entry.timestamp=Date.now()]
|
||||
* @param {string} operation ('push' or 'unshift')
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
async _addRequest({
|
||||
request,
|
||||
metadata,
|
||||
timestamp = Date.now()
|
||||
}, operation) {
|
||||
const storableRequest = await StorableRequest.fromRequest(request.clone());
|
||||
const entry = {
|
||||
requestData: storableRequest.toObject(),
|
||||
timestamp
|
||||
}; // Only include metadata if it's present.
|
||||
|
||||
if (metadata) {
|
||||
entry.metadata = metadata;
|
||||
}
|
||||
|
||||
await this._queueStore[`${operation}Entry`](entry);
|
||||
|
||||
{
|
||||
logger_js.logger.log(`Request for '${getFriendlyURL_js.getFriendlyURL(request.url)}' has ` + `been added to background sync queue '${this._name}'.`);
|
||||
} // Don't register for a sync if we're in the middle of a sync. Instead,
|
||||
// we wait until the sync is complete and call register if
|
||||
// `this._requestsAddedDuringSync` is true.
|
||||
|
||||
|
||||
if (this._syncInProgress) {
|
||||
this._requestsAddedDuringSync = true;
|
||||
} else {
|
||||
await this.registerSync();
|
||||
}
|
||||
}
|
||||
/**
|
||||
* Removes and returns the first or last (depending on `operation`) entry
|
||||
* from the QueueStore that's not older than the `maxRetentionTime`.
|
||||
*
|
||||
* @param {string} operation ('pop' or 'shift')
|
||||
* @return {Object|undefined}
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
async _removeRequest(operation) {
|
||||
const now = Date.now();
|
||||
const entry = await this._queueStore[`${operation}Entry`]();
|
||||
|
||||
if (entry) {
|
||||
// Ignore requests older than maxRetentionTime. Call this function
|
||||
// recursively until an unexpired request is found.
|
||||
const maxRetentionTimeInMs = this._maxRetentionTime * 60 * 1000;
|
||||
|
||||
if (now - entry.timestamp > maxRetentionTimeInMs) {
|
||||
return this._removeRequest(operation);
|
||||
}
|
||||
|
||||
return convertEntry(entry);
|
||||
} else {
|
||||
return undefined;
|
||||
}
|
||||
}
|
||||
/**
|
||||
* Loops through each request in the queue and attempts to re-fetch it.
|
||||
* If any request fails to re-fetch, it's put back in the same position in
|
||||
* the queue (which registers a retry for the next sync event).
|
||||
*/
|
||||
|
||||
|
||||
async replayRequests() {
|
||||
let entry;
|
||||
|
||||
while (entry = await this.shiftRequest()) {
|
||||
try {
|
||||
await fetch(entry.request.clone());
|
||||
|
||||
if ("dev" !== 'production') {
|
||||
logger_js.logger.log(`Request for '${getFriendlyURL_js.getFriendlyURL(entry.request.url)}'` + `has been replayed in queue '${this._name}'`);
|
||||
}
|
||||
} catch (error) {
|
||||
await this.unshiftRequest(entry);
|
||||
|
||||
{
|
||||
logger_js.logger.log(`Request for '${getFriendlyURL_js.getFriendlyURL(entry.request.url)}'` + `failed to replay, putting it back in queue '${this._name}'`);
|
||||
}
|
||||
|
||||
throw new WorkboxError_js.WorkboxError('queue-replay-failed', {
|
||||
name: this._name
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
{
|
||||
logger_js.logger.log(`All requests in queue '${this.name}' have successfully ` + `replayed; the queue is now empty!`);
|
||||
}
|
||||
}
|
||||
/**
|
||||
* Registers a sync event with a tag unique to this instance.
|
||||
*/
|
||||
|
||||
|
||||
async registerSync() {
|
||||
if ('sync' in self.registration) {
|
||||
try {
|
||||
await self.registration.sync.register(`${TAG_PREFIX}:${this._name}`);
|
||||
} catch (err) {
|
||||
// This means the registration failed for some reason, possibly due to
|
||||
// the user disabling it.
|
||||
{
|
||||
logger_js.logger.warn(`Unable to register sync event for '${this._name}'.`, err);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
/**
|
||||
* In sync-supporting browsers, this adds a listener for the sync event.
|
||||
* In non-sync-supporting browsers, this will retry the queue on service
|
||||
* worker startup.
|
||||
*
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
_addSyncListener() {
|
||||
if ('sync' in self.registration) {
|
||||
self.addEventListener('sync', event => {
|
||||
if (event.tag === `${TAG_PREFIX}:${this._name}`) {
|
||||
{
|
||||
logger_js.logger.log(`Background sync for tag '${event.tag}'` + `has been received`);
|
||||
}
|
||||
|
||||
const syncComplete = async () => {
|
||||
this._syncInProgress = true;
|
||||
let syncError;
|
||||
|
||||
try {
|
||||
await this._onSync({
|
||||
queue: this
|
||||
});
|
||||
} catch (error) {
|
||||
syncError = error; // Rethrow the error. Note: the logic in the finally clause
|
||||
// will run before this gets rethrown.
|
||||
|
||||
throw syncError;
|
||||
} finally {
|
||||
// New items may have been added to the queue during the sync,
|
||||
// so we need to register for a new sync if that's happened...
|
||||
// Unless there was an error during the sync, in which
|
||||
// case the browser will automatically retry later, as long
|
||||
// as `event.lastChance` is not true.
|
||||
if (this._requestsAddedDuringSync && !(syncError && !event.lastChance)) {
|
||||
await this.registerSync();
|
||||
}
|
||||
|
||||
this._syncInProgress = false;
|
||||
this._requestsAddedDuringSync = false;
|
||||
}
|
||||
};
|
||||
|
||||
event.waitUntil(syncComplete());
|
||||
}
|
||||
});
|
||||
} else {
|
||||
{
|
||||
logger_js.logger.log(`Background sync replaying without background sync event`);
|
||||
} // If the browser doesn't support background sync, retry
|
||||
// every time the service worker starts up as a fallback.
|
||||
|
||||
|
||||
this._onSync({
|
||||
queue: this
|
||||
});
|
||||
}
|
||||
}
|
||||
/**
|
||||
* Returns the set of queue names. This is primarily used to reset the list
|
||||
* of queue names in tests.
|
||||
*
|
||||
* @return {Set}
|
||||
*
|
||||
* @private
|
||||
*/
|
||||
|
||||
|
||||
static get _queueNames() {
|
||||
return queueNames;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
/*
|
||||
Copyright 2018 Google LLC
|
||||
|
||||
Use of this source code is governed by an MIT-style
|
||||
license that can be found in the LICENSE file or at
|
||||
https://opensource.org/licenses/MIT.
|
||||
*/
|
||||
/**
|
||||
* A class implementing the `fetchDidFail` lifecycle callback. This makes it
|
||||
* easier to add failed requests to a background sync Queue.
|
||||
*
|
||||
* @memberof module:workbox-background-sync
|
||||
*/
|
||||
|
||||
class BackgroundSyncPlugin {
|
||||
/**
|
||||
* @param {string} name See the [Queue]{@link module:workbox-background-sync.Queue}
|
||||
* documentation for parameter details.
|
||||
* @param {Object} [options] See the
|
||||
* [Queue]{@link module:workbox-background-sync.Queue} documentation for
|
||||
* parameter details.
|
||||
*/
|
||||
constructor(name, options) {
|
||||
/**
|
||||
* @param {Object} options
|
||||
* @param {Request} options.request
|
||||
* @private
|
||||
*/
|
||||
this.fetchDidFail = async ({
|
||||
request
|
||||
}) => {
|
||||
await this._queue.pushRequest({
|
||||
request
|
||||
});
|
||||
};
|
||||
|
||||
this._queue = new Queue(name, options);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
exports.BackgroundSyncPlugin = BackgroundSyncPlugin;
|
||||
exports.Queue = Queue;
|
||||
|
||||
return exports;
|
||||
|
||||
}({}, workbox.core._private, workbox.core._private, workbox.core._private, workbox.core._private, workbox.core._private));
|
||||
//# sourceMappingURL=workbox-background-sync.dev.js.map
|
||||
Vendored
+1
@@ -0,0 +1 @@
|
||||
{"version":3,"file":"workbox-background-sync.dev.js","sources":["../_version.js","../lib/QueueStore.js","../lib/StorableRequest.js","../Queue.js","../BackgroundSyncPlugin.js"],"sourcesContent":["\"use strict\";\n// @ts-ignore\ntry {\n self['workbox:background-sync:5.1.4'] && _();\n}\ncatch (e) { }\n","/*\n Copyright 2018 Google LLC\n\n Use of this source code is governed by an MIT-style\n license that can be found in the LICENSE file or at\n https://opensource.org/licenses/MIT.\n*/\nimport { assert } from 'workbox-core/_private/assert.js';\nimport { DBWrapper } from 'workbox-core/_private/DBWrapper.js';\nimport '../_version.js';\nconst DB_VERSION = 3;\nconst DB_NAME = 'workbox-background-sync';\nconst OBJECT_STORE_NAME = 'requests';\nconst INDEXED_PROP = 'queueName';\n/**\n * A class to manage storing requests from a Queue in IndexedDB,\n * indexed by their queue name for easier access.\n *\n * @private\n */\nexport class QueueStore {\n /**\n * Associates this instance with a Queue instance, so entries added can be\n * identified by their queue name.\n *\n * @param {string} queueName\n * @private\n */\n constructor(queueName) {\n this._queueName = queueName;\n this._db = new DBWrapper(DB_NAME, DB_VERSION, {\n onupgradeneeded: this._upgradeDb,\n });\n }\n /**\n * Append an entry last in the queue.\n *\n * @param {Object} entry\n * @param {Object} entry.requestData\n * @param {number} [entry.timestamp]\n * @param {Object} [entry.metadata]\n * @private\n */\n async pushEntry(entry) {\n if (process.env.NODE_ENV !== 'production') {\n assert.isType(entry, 'object', {\n moduleName: 'workbox-background-sync',\n className: 'QueueStore',\n funcName: 'pushEntry',\n paramName: 'entry',\n });\n assert.isType(entry.requestData, 'object', {\n moduleName: 'workbox-background-sync',\n className: 'QueueStore',\n funcName: 'pushEntry',\n paramName: 'entry.requestData',\n });\n }\n // Don't specify an ID since one is automatically generated.\n delete entry.id;\n entry.queueName = this._queueName;\n await this._db.add(OBJECT_STORE_NAME, entry);\n }\n /**\n * Prepend an entry first in the queue.\n *\n * @param {Object} entry\n * @param {Object} entry.requestData\n * @param {number} [entry.timestamp]\n * @param {Object} [entry.metadata]\n * @private\n */\n async unshiftEntry(entry) {\n if (process.env.NODE_ENV !== 'production') {\n assert.isType(entry, 'object', {\n moduleName: 'workbox-background-sync',\n className: 'QueueStore',\n funcName: 'unshiftEntry',\n paramName: 'entry',\n });\n assert.isType(entry.requestData, 'object', {\n moduleName: 'workbox-background-sync',\n className: 'QueueStore',\n funcName: 'unshiftEntry',\n paramName: 'entry.requestData',\n });\n }\n const [firstEntry] = await this._db.getAllMatching(OBJECT_STORE_NAME, {\n count: 1,\n });\n if (firstEntry) {\n // Pick an ID one less than the lowest ID in the object store.\n entry.id = firstEntry.id - 1;\n }\n else {\n // Otherwise let the auto-incrementor assign the ID.\n delete entry.id;\n }\n entry.queueName = this._queueName;\n await this._db.add(OBJECT_STORE_NAME, entry);\n }\n /**\n * Removes and returns the last entry in the queue matching the `queueName`.\n *\n * @return {Promise<Object>}\n * @private\n */\n async popEntry() {\n return this._removeEntry({ direction: 'prev' });\n }\n /**\n * Removes and returns the first entry in the queue matching the `queueName`.\n *\n * @return {Promise<Object>}\n * @private\n */\n async shiftEntry() {\n return this._removeEntry({ direction: 'next' });\n }\n /**\n * Returns all entries in the store matching the `queueName`.\n *\n * @param {Object} options See {@link module:workbox-background-sync.Queue~getAll}\n * @return {Promise<Array<Object>>}\n * @private\n */\n async getAll() {\n return await this._db.getAllMatching(OBJECT_STORE_NAME, {\n index: INDEXED_PROP,\n query: IDBKeyRange.only(this._queueName),\n });\n }\n /**\n * Deletes the entry for the given ID.\n *\n * WARNING: this method does not ensure the deleted enry belongs to this\n * queue (i.e. matches the `queueName`). But this limitation is acceptable\n * as this class is not publicly exposed. An additional check would make\n * this method slower than iLine truncated
|
||||
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