chore(release): publish [skip ci]

- @ohif/extension-vtk@1.7.12
 - @ohif/viewer@4.5.20

extensions/dicom-rt/CHANGELOG.md

@@ -3,6 +3,14 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [0.4.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.4.8...@ohif/extension-dicom-rt@0.4.9) (2020-10-12)
+
+**Note:** Version bump only for package @ohif/extension-dicom-rt
+
+
+
+
+
 ## [0.4.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.4.7...@ohif/extension-dicom-rt@0.4.8) (2020-10-07)
 
 **Note:** Version bump only for package @ohif/extension-dicom-rt

extensions/dicom-rt/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-dicom-rt",
-  "version": "0.4.8",
+  "version": "0.4.9",
   "description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
   "author": "OHIF",
   "license": "MIT",
@@ -32,6 +32,7 @@
     "cornerstone-core": "^2.2.8",
     "cornerstone-tools": "^4.20.1",
     "dcmjs": "0.16.5",
+    "gl-matrix": "^3.3.0",
     "prop-types": "^15.6.2",
     "react": "^16.8.6",
     "react-dom": "^16.8.6",

extensions/dicom-rt/src/loadRTStruct.js

@@ -4,6 +4,7 @@ import cornerstone from 'cornerstone-core';
 import cornerstoneTools from 'cornerstone-tools';
 import transformPointsToImagePlane from './utils/transformPointsToImagePlane';
 import TOOL_NAMES from './utils/toolNames';
+import { vec3 } from 'gl-matrix';
 
 const dicomlab2RGB = dcmjs.data.Colors.dicomlab2RGB;
 const globalImageIdSpecificToolStateManager =
@@ -66,8 +67,6 @@ export default async function loadRTStruct(
 
   const rtStructDisplayToolName = TOOL_NAMES.RTSTRUCT_DISPLAY_TOOL;
 
-  debugger;
-
   for (let i = 0; i < ROIContourSequence.length; i++) {
     const ROIContour = ROIContourSequence[i];
     const { ReferencedROINumber, ContourSequence } = ROIContour;
@@ -88,7 +87,14 @@ export default async function loadRTStruct(
         ContourGeometricType,
       } = ContourSequenceArray[c];
 
-      const sopInstanceUID = ContourImageSequence.ReferencedSOPInstanceUID;
+      const sopInstanceUID = ContourImageSequence
+        ? ContourImageSequence.ReferencedSOPInstanceUID
+        : _getClosestSOPInstanceUID(
+            ContourData,
+            ContourGeometricType,
+            NumberOfContourPoints,
+            imageIdSopInstanceUidPairs
+          );
       const imageId = _getImageId(imageIdSopInstanceUidPairs, sopInstanceUID);
       const imageIdSpecificToolData = _getOrCreateImageIdSpecificToolData(
         toolState,
@@ -326,3 +332,78 @@ function _getImageIdSopInstanceUidPairsForDisplaySet(
 function _toArray(objOrArray) {
   return Array.isArray(objOrArray) ? objOrArray : [objOrArray];
 }
+
+function _getClosestSOPInstanceUID(
+  ContourData,
+  ContourGeometricType,
+  NumberOfContourPoints,
+  imageIdSopInstanceUidPairs
+) {
+  const closest = {
+    distance: Infinity,
+    sopInstanceUID: null,
+  };
+
+  let point;
+
+  switch (ContourGeometricType) {
+    case 'POINT':
+      point = ContourData;
+      break;
+    case 'CLOSED_PLANAR':
+    case 'OPEN_PLANAR':
+      // These are defined as planar, so get the of the region to get the
+      // Best mapping to a plane even if its potentially off center.
+
+      point = [0, 0, 0];
+      for (let p = 0; p < NumberOfContourPoints * 3; p += 3) {
+        point[0] += ContourData[p];
+        point[1] += ContourData[p + 1];
+        point[2] += ContourData[p + 2];
+      }
+
+      point[0] /= NumberOfContourPoints;
+      point[1] /= NumberOfContourPoints;
+      point[2] /= NumberOfContourPoints;
+  }
+
+  imageIdSopInstanceUidPairs.forEach(pair => {
+    const { imageId } = pair;
+
+    const imagePlaneModule = cornerstone.metaData.get(
+      'imagePlaneModule',
+      imageId
+    );
+
+    const distance = distanceFromPointToPlane(point, imagePlaneModule);
+
+    if (distance < closest.distance) {
+      closest.distance = distance;
+      closest.sopInstanceUID = pair.sopInstanceUID;
+    }
+  });
+
+  return closest.sopInstanceUID;
+}
+
+/**
+ *
+ * @param {number[3]} P - The point
+ * @param {object} imagePlaneModule The cornerstone metadata object for the imagePlane
+ */
+function distanceFromPointToPlane(P, imagePlaneModule) {
+  const {
+    rowCosines,
+    columnCosines,
+    imagePositionPatient: Q,
+  } = imagePlaneModule;
+
+  let N = [];
+  vec3.cross(N, rowCosines, columnCosines);
+
+  const [A, B, C] = N;
+
+  const D = -A * Q[0] - B * Q[1] - C * Q[2];
+
+  return Math.abs(A * P[0] + B * P[1] + C * P[2] + D); // Denominator is sqrt(A**2 + B**2 + C**2) which is 1 as its a normal vector
+}

extensions/vtk/CHANGELOG.md

@@ -3,6 +3,22 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [1.7.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.7.11...@ohif/extension-vtk@1.7.12) (2020-10-13)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
+## [1.7.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.7.10...@ohif/extension-vtk@1.7.11) (2020-10-13)
+
+**Note:** Version bump only for package @ohif/extension-vtk
+
+
+
+
+
 ## [1.7.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.7.9...@ohif/extension-vtk@1.7.10) (2020-10-07)
 
 **Note:** Version bump only for package @ohif/extension-vtk

extensions/vtk/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-vtk",
-  "version": "1.7.10",
+  "version": "1.7.12",
   "description": "OHIF extension for VTK.js",
   "author": "OHIF",
   "license": "MIT",
@@ -50,7 +50,7 @@
   "dependencies": {
     "@babel/runtime": "^7.5.5",
     "lodash.throttle": "^4.1.1",
-    "react-vtkjs-viewport": "^0.10.4"
+    "react-vtkjs-viewport": "^0.13.1"
   },
   "devDependencies": {
     "@ohif/core": "^2.10.7",

extensions/vtk/src/commandsModule.js

@@ -1,9 +1,9 @@
 import throttle from 'lodash.throttle';
 import {
-  vtkInteractorStyleMPRCrosshairs,
   vtkInteractorStyleMPRWindowLevel,
+  vtkInteractorStyleRotatableMPRCrosshairs,
+  vtkSVGRotatableCrosshairsWidget,
   vtkInteractorStyleMPRRotate,
-  vtkSVGCrosshairsWidget,
 } from 'react-vtkjs-viewport';
 import { getImageData } from 'react-vtkjs-viewport';
 import { vec3 } from 'gl-matrix';
@@ -11,11 +11,10 @@ import setMPRLayout from './utils/setMPRLayout.js';
 import setViewportToVTK from './utils/setViewportToVTK.js';
 import Constants from 'vtk.js/Sources/Rendering/Core/VolumeMapper/Constants.js';
 import OHIFVTKViewport from './OHIFVTKViewport';
-import vtkCoordinate from 'vtk.js/Sources/Rendering/Core/Coordinate';
 
 const { BlendMode } = Constants;
 
-const commandsModule = ({ commandsManager }) => {
+const commandsModule = ({ commandsManager, UINotificationService }) => {
   // TODO: Put this somewhere else
   let apis = {};
 
@@ -119,6 +118,14 @@ const commandsModule = ({ commandsManager }) => {
     getVtkApis: ({ index }) => {
       return apis[index];
     },
+    resetMPRView() {
+      apis.forEach(api => {
+        api.resetOrientation();
+      });
+
+      // Reset the crosshairs
+      apis[0].svgWidgets.rotatableCrosshairsWidget.resetCrosshairs(apis, 0);
+    },
     axial: async ({ viewports }) => {
       const api = await _getActiveViewportVTKApi(viewports);
 
@@ -165,7 +172,7 @@ const commandsModule = ({ commandsManager }) => {
       segmentNumber,
       frameIndex,
       frame,
-      done = () => { }
+      done = () => {},
     }) => {
       let api = apis[viewports.activeViewportIndex];
 
@@ -180,10 +187,13 @@ const commandsModule = ({ commandsManager }) => {
         displaySetInstanceUID,
         SOPClassUID,
         SOPInstanceUID,
-        frameIndex,
+        frameIndex
       );
 
-      const imageDataObject = getImageData(stack.imageIds, displaySetInstanceUID);
+      const imageDataObject = getImageData(
+        stack.imageIds,
+        displaySetInstanceUID
+      );
 
       let pixelIndex = 0;
       let x = 0;
@@ -209,9 +219,12 @@ const commandsModule = ({ commandsManager }) => {
       y /= count;
 
       const position = [x, y, frameIndex];
-      const worldPos = _convertModelToWorldSpace(position, imageDataObject.vtkImageData);
+      const worldPos = _convertModelToWorldSpace(
+        position,
+        imageDataObject.vtkImageData
+      );
 
-      api.svgWidgets.crosshairsWidget.moveCrosshairs(worldPos, apis);
+      api.svgWidgets.rotatableCrosshairsWidget.moveCrosshairs(worldPos, apis);
       done();
     },
     setSegmentationConfiguration: async ({
@@ -254,21 +267,35 @@ const commandsModule = ({ commandsManager }) => {
       await Promise.all(promises);
     },
     enableRotateTool: () => {
-      apis.forEach(api => {
+      apis.forEach((api, apiIndex) => {
         const istyle = vtkInteractorStyleMPRRotate.newInstance();
 
-        api.setInteractorStyle({ istyle });
+        api.setInteractorStyle({ istyle, configuration: { apis, apiIndex } });
       });
     },
     enableCrosshairsTool: () => {
       apis.forEach((api, apiIndex) => {
-        const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
+        const istyle = vtkInteractorStyleRotatableMPRCrosshairs.newInstance();
 
         api.setInteractorStyle({
           istyle,
-          configuration: { apis, apiIndex },
+          configuration: {
+            apis,
+            apiIndex,
+            uid: api.uid,
+          },
         });
       });
+
+      const rotatableCrosshairsWidget =
+        apis[0].svgWidgets.rotatableCrosshairsWidget;
+
+      const referenceLines = rotatableCrosshairsWidget.getReferenceLines();
+
+      // Initilise crosshairs if not initialised.
+      if (!referenceLines) {
+        rotatableCrosshairsWidget.resetCrosshairs(apis, 0);
+      }
     },
     enableLevelTool: () => {
       function updateVOI(apis, windowWidth, windowCenter) {
@@ -391,18 +418,59 @@ const commandsModule = ({ commandsManager }) => {
       // Add widgets and set default interactorStyle of each viewport.
       apis.forEach((api, apiIndex) => {
         api.addSVGWidget(
-          vtkSVGCrosshairsWidget.newInstance(),
-          'crosshairsWidget'
+          vtkSVGRotatableCrosshairsWidget.newInstance(),
+          'rotatableCrosshairsWidget'
         );
 
         const uid = api.uid;
-        const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
+        const istyle = vtkInteractorStyleRotatableMPRCrosshairs.newInstance();
 
         api.setInteractorStyle({
           istyle,
           configuration: { apis, apiIndex, uid },
         });
+
+        api.svgWidgets.rotatableCrosshairsWidget.setApiIndex(apiIndex);
+        api.svgWidgets.rotatableCrosshairsWidget.setApis(apis);
       });
+
+      const firstApi = apis[0];
+
+      // Initialise crosshairs
+      apis[0].svgWidgets.rotatableCrosshairsWidget.resetCrosshairs(apis, 0);
+
+      // Check if we have full WebGL 2 support
+      const openGLRenderWindow = apis[0].genericRenderWindow.getOpenGLRenderWindow();
+
+      if (!openGLRenderWindow.getWebgl2()) {
+        // Throw a warning if we don't have WebGL 2 support,
+        // And the volume is too big to fit in a 2D texture
+
+        const openGLContext = openGLRenderWindow.getContext();
+        const maxTextureSizeInBytes = openGLContext.getParameter(
+          openGLContext.MAX_TEXTURE_SIZE
+        );
+
+        const maxBufferLengthFloat32 =
+          (maxTextureSizeInBytes * maxTextureSizeInBytes) / 4;
+
+        const dimensions = firstApi.volumes[0]
+          .getMapper()
+          .getInputData()
+          .getDimensions();
+
+        const volumeLength = dimensions[0] * dimensions[1] * dimensions[2];
+
+        if (volumeLength > maxBufferLengthFloat32) {
+          UINotificationService.show({
+            title: 'Browser does not support WebGL 2',
+            message:
+              'This volume is too large to fit in WebGL 1 textures and will display incorrectly. Please use a different browser to view this data',
+            type: 'error',
+            autoClose: false,
+          });
+        }
+      }
     },
   };
 
@@ -456,6 +524,10 @@ const commandsModule = ({ commandsManager }) => {
       commandFn: actions.enableLevelTool,
       options: {},
     },
+    resetMPRView: {
+      commandFn: actions.resetMPRView,
+      options: {},
+    },
     setBlendModeToComposite: {
       commandFn: actions.setBlendModeToComposite,
       options: { blendMode: BlendMode.COMPOSITE_BLEND },

extensions/vtk/src/index.js

@@ -27,8 +27,9 @@ const vtkExtension = {
   getToolbarModule() {
     return toolbarModule;
   },
-  getCommandsModule({ commandsManager }) {
-    return commandsModule({ commandsManager });
+  getCommandsModule({ commandsManager, servicesManager }) {
+    const { UINotificationService } = servicesManager.services;
+    return commandsModule({ commandsManager, UINotificationService });
   },
 };
 

extensions/vtk/src/toolbarModule.js

@@ -25,6 +25,15 @@ const definitions = [
     commandName: 'enableLevelTool',
     commandOptions: {},
   },
+  {
+    id: 'Reset',
+    label: 'Reset',
+    icon: 'reset',
+    //
+    type: TOOLBAR_BUTTON_TYPES.COMMAND,
+    commandName: 'resetMPRView',
+    commandOptions: {},
+  },
   {
     id: 'Rotate',
     label: 'Rotate',
@@ -131,4 +140,4 @@ const definitions = [
 export default {
   definitions,
   defaultContext: 'ACTIVE_VIEWPORT::VTK',
-}
+};

platform/viewer/CHANGELOG.md

@@ -3,6 +3,30 @@
 All notable changes to this project will be documented in this file.
 See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
 
+## [4.5.20](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.5.19...@ohif/viewer@4.5.20) (2020-10-13)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.5.19](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.5.18...@ohif/viewer@4.5.19) (2020-10-13)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
+## [4.5.18](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.5.17...@ohif/viewer@4.5.18) (2020-10-12)
+
+**Note:** Version bump only for package @ohif/viewer
+
+
+
+
+
 ## [4.5.17](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.5.16...@ohif/viewer@4.5.17) (2020-10-07)
 
 **Note:** Version bump only for package @ohif/viewer

platform/viewer/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/viewer",
-  "version": "4.5.17",
+  "version": "4.5.20",
   "description": "OHIF Viewer",
   "author": "OHIF Contributors",
   "license": "MIT",
@@ -54,10 +54,10 @@
     "@ohif/extension-dicom-html": "^1.2.9",
     "@ohif/extension-dicom-microscopy": "^0.51.3",
     "@ohif/extension-dicom-pdf": "^1.0.6",
-    "@ohif/extension-dicom-rt": "^0.4.8",
+    "@ohif/extension-dicom-rt": "^0.4.9",
     "@ohif/extension-dicom-segmentation": "^0.4.7",
     "@ohif/extension-lesion-tracker": "^0.2.1",
-    "@ohif/extension-vtk": "^1.7.10",
+    "@ohif/extension-vtk": "^1.7.12",
     "@ohif/i18n": "^0.52.8",
     "@ohif/ui": "^1.5.6",
     "@tanem/react-nprogress": "^1.1.25",

yarn.lock

@@ -6539,13 +6539,14 @@ dateformat@^3.0.0:
   resolved "https://registry.yarnpkg.com/dateformat/-/dateformat-3.0.3.tgz#a6e37499a4d9a9cf85ef5872044d62901c9889ae"
   integrity sha512-jyCETtSl3VMZMWeRo7iY1FL19ges1t55hMo5yaam4Jrsm5EPL89UQkoQRyiI+Yf4k8r2ZpdngkV8hr1lIdjb3Q==
 
-dcmjs@0.16.3:
-  version "0.16.3"
-  resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.16.3.tgz#ef44ccc4988a473fd40e1601122c57f2babded11"
-  integrity sha512-pMQGifMpMW9i9ufCdUoEPHrLWnm6ilnpfLqUc+PPoWr7OnuBhiRVRunbv39oTtFDZOLhQ2Ampm7UrkidWAbqiA==
+dcmjs@0.16.5:
+  version "0.16.5"
+  resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.16.5.tgz#05aa0c8d539a4d5777f996b9b796932d1f848993"
+  integrity sha512-Y92KAx4JSfev79xjYhaukQZjWgyJlaHnXSTdbtkGkJAHERjIakgHcCIPmACuVmtW/nHViTu04zIGAB0pmZ4GaA==
   dependencies:
     "@babel/polyfill" "^7.8.3"
     "@babel/runtime" "^7.8.4"
+    gl-matrix "^3.1.0"
     loglevelnext "^3.0.1"
     ndarray "^1.0.19"
 
@@ -16060,10 +16061,10 @@ react-transition-group@^4.1.1:
     loose-envify "^1.4.0"
     prop-types "^15.6.2"
 
-react-vtkjs-viewport@^0.10.4:
-  version "0.10.4"
-  resolved "https://registry.yarnpkg.com/react-vtkjs-viewport/-/react-vtkjs-viewport-0.10.4.tgz#eb038b0bf5c384bd3b45f2a0a57f52c682607fea"
-  integrity sha512-J1WxwHbjlttEWvdkM33DJx8QxHr3J7HR6wFSDVBDKY7McK2lwDAdRN8wSqy2BVNILlyurUUVwg2tK2txiJ+tuw==
+react-vtkjs-viewport@^0.13.1:
+  version "0.13.1"
+  resolved "https://registry.yarnpkg.com/react-vtkjs-viewport/-/react-vtkjs-viewport-0.13.1.tgz#11b69873377cd66b6522079eb05d54317c2e8903"
+  integrity sha512-P2jmv0rZtas9+pZCzVBr0R/EqmXpWqPP8JA1DScwKgFoYj4ApqnQeLXSVz2VHXi58q87k2uay9k7xcchLiStrQ==
   dependencies:
     date-fns "^2.2.1"
     gl-matrix "^3.1.0"