Compare commits
14
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a8caf4bba4 |
No files matched your search
@@ -3,6 +3,22 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [2.9.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.9.3...@ohif/extension-cornerstone@2.9.4) (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.9.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.9.2...@ohif/extension-cornerstone@2.9.3) (2020-09-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.9.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@2.9.1...@ohif/extension-cornerstone@2.9.2) (2020-08-20)
|
||||
|
||||
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone",
|
||||
"version": "2.9.2",
|
||||
"version": "2.9.4",
|
||||
"description": "OHIF extension for Cornerstone",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -36,7 +36,7 @@
|
||||
"cornerstone-math": "^0.1.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dcmjs": "0.16.0",
|
||||
"dcmjs": "0.16.3",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"hammerjs": "^2.0.8",
|
||||
"prop-types": "^15.6.2",
|
||||
|
||||
@@ -3,6 +3,7 @@ import init from './init.js';
|
||||
import commandsModule from './commandsModule.js';
|
||||
import toolbarModule from './toolbarModule.js';
|
||||
import CornerstoneViewportDownloadForm from './CornerstoneViewportDownloadForm';
|
||||
import { version } from '../package.json';
|
||||
|
||||
const Component = React.lazy(() => {
|
||||
return import('./OHIFCornerstoneViewport');
|
||||
@@ -24,6 +25,7 @@ export default {
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'cornerstone',
|
||||
version,
|
||||
|
||||
/**
|
||||
*
|
||||
|
||||
File renamed without changes.
File renamed without changes.
@@ -3,6 +3,30 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.1.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.1.4...@ohif/extension-debugging@0.1.5) (2020-09-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-debugging
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-debugging@0.1.3...@ohif/extension-debugging@0.1.4) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-debugging
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## 0.1.3 (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-debugging
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.1.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-p10-downloader@0.1.1...@ohif/extension-dicom-p10-downloader@0.1.2) (2020-06-18)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-p10-downloader
|
||||
File renamed without changes.
File renamed without changes.
@@ -1,7 +1,7 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-p10-downloader",
|
||||
"version": "0.1.2",
|
||||
"description": "OHIF extension for downloading DICOM P10 files",
|
||||
"name": "@ohif/extension-debugging",
|
||||
"version": "0.1.5",
|
||||
"description": "OHIF extension for debugging.",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
"repository": "OHIF/Viewers",
|
||||
@@ -33,6 +33,7 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"detect-browser": "5.1.1",
|
||||
"dicomweb-client": "^0.6.0",
|
||||
"file-saver": "^2.0.2",
|
||||
"jszip": "^3.2.2"
|
||||
@@ -0,0 +1,9 @@
|
||||
.debugReportModalHeader {
|
||||
padding: 10px 0 10px;
|
||||
color: var(--active-color);
|
||||
}
|
||||
|
||||
.debug-report-modal-container {
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
}
|
||||
@@ -0,0 +1,245 @@
|
||||
import React from 'react';
|
||||
import { detect } from 'detect-browser';
|
||||
import './DebugReportModal.css';
|
||||
import { ToolbarButton } from '@ohif/ui';
|
||||
|
||||
const DubugReportModal = ({
|
||||
viewports,
|
||||
studies,
|
||||
servers,
|
||||
extensionManager,
|
||||
mailTo,
|
||||
}) => {
|
||||
const mailToFunction = () => {
|
||||
const StudyInstanceUID = Object.keys(studies.studyData)[0];
|
||||
|
||||
const subject = encodeURI(`Issue with Study: ${StudyInstanceUID}`);
|
||||
|
||||
let body = `Enter the description of your problem here: \n\n\n`;
|
||||
|
||||
body += `============= SESSION INFO =============\n\n`;
|
||||
|
||||
// App version
|
||||
|
||||
body += '== App ==\n';
|
||||
body += `version\t${window.version}\n\n`;
|
||||
|
||||
// Extensions Versions
|
||||
|
||||
body += '== Extensions Versions ==\n';
|
||||
|
||||
const { registeredExtensionVesions } = extensionManager;
|
||||
|
||||
Object.keys(registeredExtensionVesions).forEach(extensionId => {
|
||||
const version = registeredExtensionVesions[extensionId];
|
||||
|
||||
body += `${extensionId}\t${version}\n`;
|
||||
});
|
||||
|
||||
body += '\n';
|
||||
|
||||
// Browser Info
|
||||
|
||||
const browser = detect();
|
||||
|
||||
const { name, os, type, version } = browser;
|
||||
|
||||
body += '== Browser Info ==\n';
|
||||
body += `name\t ${name}\n`;
|
||||
body += `os\t ${os}\n`;
|
||||
body += `type\t ${type}\n`;
|
||||
body += `version\t ${version}\n\n`;
|
||||
|
||||
// Study URL
|
||||
body += '== URL ==\n';
|
||||
body += `URL\t ${window.location.href}\n\n`;
|
||||
|
||||
// Layout
|
||||
|
||||
const { numRows, numColumns, viewportSpecificData } = viewports;
|
||||
|
||||
body += '== Viewport Layout ==\n';
|
||||
body += `Rows\t${numRows}\n`;
|
||||
body += `Columns\t${numColumns}\n\n`;
|
||||
|
||||
body += '== Viewports ==\n';
|
||||
|
||||
Object.keys(viewportSpecificData).forEach(viewportIndex => {
|
||||
const vsd = viewportSpecificData[viewportIndex];
|
||||
|
||||
const [row, column] = _viewportIndexToViewportPosition(
|
||||
viewportIndex,
|
||||
numColumns
|
||||
);
|
||||
|
||||
body += `[${row},${column}]\t${vsd.SeriesInstanceUID}\n`;
|
||||
});
|
||||
|
||||
// TODO Text dump of rest of stuff.
|
||||
|
||||
body = encodeURI(body);
|
||||
|
||||
window.location.href = `mailto:${mailTo}?subject=${subject}&body=${body}`;
|
||||
};
|
||||
|
||||
return (
|
||||
<div className="debug-report-modal-container">
|
||||
{mailTo ? (
|
||||
<div>
|
||||
<ToolbarButton
|
||||
label={'Send Bug Report'}
|
||||
onClick={mailToFunction}
|
||||
icon={'envelope-square'}
|
||||
isActive={false}
|
||||
/>
|
||||
</div>
|
||||
) : null}
|
||||
<div>
|
||||
<table>
|
||||
{getAppVersion()}
|
||||
{getExtensionVersions(extensionManager)}
|
||||
{getBrowserInfo()}
|
||||
{getCurrentStudyUrl()}
|
||||
{getLayout(viewports)}
|
||||
</table>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
const getAppVersion = () => {
|
||||
return (
|
||||
<React.Fragment>
|
||||
<tr>
|
||||
<th className="debugReportModalHeader">App</th>
|
||||
</tr>
|
||||
<tr>
|
||||
<td>Version</td>
|
||||
<td>{window.version}</td>
|
||||
</tr>
|
||||
</React.Fragment>
|
||||
);
|
||||
};
|
||||
|
||||
const getCurrentStudyUrl = () => {
|
||||
return (
|
||||
<React.Fragment>
|
||||
<tr>
|
||||
<th className="debugReportModalHeader">URL</th>
|
||||
</tr>
|
||||
<tr>
|
||||
<td>URL</td>
|
||||
<td>{window.location.href}</td>
|
||||
</tr>
|
||||
</React.Fragment>
|
||||
);
|
||||
};
|
||||
|
||||
const getExtensionVersions = extensionManager => {
|
||||
const { registeredExtensionVesions } = extensionManager;
|
||||
|
||||
const lineItems = Object.keys(registeredExtensionVesions).map(extensionId => {
|
||||
const version = registeredExtensionVesions[extensionId];
|
||||
|
||||
return (
|
||||
<tr>
|
||||
<td>{extensionId}</td>
|
||||
<td>{version}</td>
|
||||
</tr>
|
||||
);
|
||||
});
|
||||
|
||||
return (
|
||||
<React.Fragment>
|
||||
<th className="debugReportModalHeader">Extensions</th>
|
||||
{lineItems}
|
||||
</React.Fragment>
|
||||
);
|
||||
};
|
||||
|
||||
const getLayout = viewports => {
|
||||
const { numRows, numColumns } = viewports;
|
||||
|
||||
return (
|
||||
<React.Fragment>
|
||||
<tr>
|
||||
<th className="debugReportModalHeader">Viewports</th>
|
||||
</tr>
|
||||
<tr>
|
||||
<th>Layout</th>
|
||||
</tr>
|
||||
<tr>
|
||||
<td>Rows</td>
|
||||
<td>{numRows}</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td>Columns</td>
|
||||
<td>{numColumns}</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<th>SeriesInstanceUIDs</th>
|
||||
</tr>
|
||||
{getSeriesInstanceUIDsPerRow(viewports)}
|
||||
</React.Fragment>
|
||||
);
|
||||
};
|
||||
|
||||
const getBrowserInfo = () => {
|
||||
const browser = detect();
|
||||
|
||||
const { name, os, type, version } = browser;
|
||||
|
||||
return (
|
||||
<React.Fragment>
|
||||
<tr>
|
||||
<th className="debugReportModalHeader">Platform</th>
|
||||
</tr>
|
||||
<tr>
|
||||
<td>name</td>
|
||||
<td>{name}</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td>os</td>
|
||||
<td>{os}</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td>type</td>
|
||||
<td>{type}</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td>version</td>
|
||||
<td>{version}</td>
|
||||
</tr>
|
||||
</React.Fragment>
|
||||
);
|
||||
};
|
||||
|
||||
const getSeriesInstanceUIDsPerRow = viewports => {
|
||||
const { viewportSpecificData, numColumns } = viewports;
|
||||
|
||||
// NOTE viewportSpecificData is actually an object with numerical keys.
|
||||
return Object.keys(viewportSpecificData).map(viewportIndex => {
|
||||
const vsd = viewportSpecificData[viewportIndex];
|
||||
|
||||
const [row, column] = _viewportIndexToViewportPosition(
|
||||
viewportIndex,
|
||||
numColumns
|
||||
);
|
||||
|
||||
return (
|
||||
<tr>
|
||||
<td>{`[${row},${column}]`}</td>
|
||||
<td>{vsd.SeriesInstanceUID}</td>
|
||||
</tr>
|
||||
);
|
||||
});
|
||||
};
|
||||
|
||||
const _viewportIndexToViewportPosition = (viewportIndex, numColumns) => {
|
||||
const row = Math.floor(viewportIndex / numColumns);
|
||||
const column = viewportIndex % numColumns;
|
||||
|
||||
return [row, column];
|
||||
};
|
||||
|
||||
export default DubugReportModal;
|
||||
+29
-1
@@ -8,12 +8,16 @@ import {
|
||||
getSOPInstanceReferencesFromViewports,
|
||||
} from './utils';
|
||||
import _downloadAndZip, { downloadInstances } from './downloadAndZip';
|
||||
import DebugReportModal from './DebugReportModal';
|
||||
import React from 'react';
|
||||
|
||||
import state from './state';
|
||||
|
||||
const {
|
||||
utils: { Queue },
|
||||
} = OHIF;
|
||||
|
||||
export function getCommands(context) {
|
||||
export function getCommands(context, servicesManager, extensionManager) {
|
||||
const queue = new Queue(1);
|
||||
const actions = {
|
||||
/**
|
||||
@@ -87,9 +91,33 @@ export function getCommands(context) {
|
||||
serverConfig
|
||||
);
|
||||
},
|
||||
openDebugInfoModal({ viewports, studies, servers }) {
|
||||
const { UIModalService } = servicesManager.services;
|
||||
|
||||
const WrappedDebugReportModal = function() {
|
||||
return (
|
||||
<DebugReportModal
|
||||
viewports={viewports}
|
||||
studies={studies}
|
||||
servers={servers}
|
||||
extensionManager={extensionManager}
|
||||
mailTo={state.mailTo}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
UIModalService.show({
|
||||
content: WrappedDebugReportModal,
|
||||
title: `Debugging Information`,
|
||||
});
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
openDebugInfoModal: {
|
||||
commandFn: actions.openDebugInfoModal,
|
||||
storeContexts: ['viewports', 'servers', 'studies'],
|
||||
},
|
||||
downloadAndZip: {
|
||||
commandFn: queue.bindSafe(actions.downloadAndZip, error),
|
||||
storeContexts: ['servers'],
|
||||
File renamed without changes.
@@ -1,5 +1,8 @@
|
||||
import { getDicomWebClientFromConfig } from './utils';
|
||||
import { getCommands } from './commandsModule';
|
||||
import { version } from '../package.json';
|
||||
import toolbarModule from './toolbarModule';
|
||||
import state from './state';
|
||||
|
||||
/**
|
||||
* Constants
|
||||
@@ -21,23 +24,32 @@ export default {
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'dicom-p10-downloader',
|
||||
version,
|
||||
|
||||
/**
|
||||
* LIFECYCLE HOOKS
|
||||
*/
|
||||
|
||||
preRegistration({ appConfig }) {
|
||||
preRegistration({ appConfig, configuration }) {
|
||||
const dicomWebClient = getDicomWebClientFromConfig(appConfig);
|
||||
if (dicomWebClient) {
|
||||
sharedContext.dicomWebClient = dicomWebClient;
|
||||
}
|
||||
|
||||
if (configuration && configuration.mailTo) {
|
||||
state.mailTo = configuration.mailTo;
|
||||
}
|
||||
},
|
||||
|
||||
/**
|
||||
* MODULE GETTERS
|
||||
*/
|
||||
|
||||
getCommandsModule() {
|
||||
return getCommands(sharedContext);
|
||||
getCommandsModule({ servicesManager, extensionManager }) {
|
||||
return getCommands(sharedContext, servicesManager, extensionManager);
|
||||
},
|
||||
|
||||
getToolbarModule() {
|
||||
return toolbarModule;
|
||||
},
|
||||
};
|
||||
@@ -0,0 +1,3 @@
|
||||
const state = { mailTo: undefined };
|
||||
|
||||
export default state;
|
||||
@@ -0,0 +1,20 @@
|
||||
const TOOLBAR_BUTTON_TYPES = {
|
||||
COMMAND: 'command',
|
||||
};
|
||||
|
||||
const definitions = [
|
||||
{
|
||||
id: 'Debug Info',
|
||||
label: 'Debug Info',
|
||||
icon: 'cog',
|
||||
//
|
||||
type: TOOLBAR_BUTTON_TYPES.COMMAND,
|
||||
commandName: 'openDebugInfoModal',
|
||||
context: 'VIEWER',
|
||||
},
|
||||
];
|
||||
|
||||
export default {
|
||||
definitions,
|
||||
defaultContext: 'VIEWER',
|
||||
};
|
||||
File renamed without changes.
@@ -3,6 +3,30 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.2.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.2.7...@ohif/extension-dicom-html@1.2.8) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.2.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.2.6...@ohif/extension-dicom-html@1.2.7) (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.2.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.2.5...@ohif/extension-dicom-html@1.2.6) (2020-09-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.2.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.2.4...@ohif/extension-dicom-html@1.2.5) (2020-08-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-html
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-html",
|
||||
"version": "1.2.5",
|
||||
"version": "1.2.8",
|
||||
"description": "OHIF extension for rendering structured reports to HTML",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -29,7 +29,7 @@
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"dcmjs": "0.16.0",
|
||||
"dcmjs": "0.16.3",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
|
||||
@@ -22,11 +22,13 @@ const OHIFDicomHtmlSopClassHandler = {
|
||||
getDisplaySetFromSeries(series, study, dicomWebClient, authorizationHeaders) {
|
||||
const instance = series.getFirstInstance();
|
||||
|
||||
const metadata = instance.getData().metadata;
|
||||
const {
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SeriesNumber,
|
||||
} = instance._instance.metadata;
|
||||
} = metadata;
|
||||
|
||||
return {
|
||||
plugin: 'html',
|
||||
@@ -37,6 +39,8 @@ const OHIFDicomHtmlSopClassHandler = {
|
||||
SOPInstanceUID: instance.getSOPInstanceUID(),
|
||||
SeriesInstanceUID: series.getSeriesInstanceUID(),
|
||||
StudyInstanceUID: study.getStudyInstanceUID(),
|
||||
SeriesDescription,
|
||||
metadata,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SeriesNumber,
|
||||
|
||||
@@ -1,5 +1,6 @@
|
||||
import React from 'react';
|
||||
import OHIFDicomHtmlSopClassHandler from './OHIFDicomHtmlSopClassHandler.js';
|
||||
import { version } from '../package.json';
|
||||
|
||||
const Component = React.lazy(() => {
|
||||
return import('./OHIFDicomHtmlViewport');
|
||||
@@ -18,6 +19,7 @@ export default {
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'html',
|
||||
version,
|
||||
|
||||
getViewportModule() {
|
||||
return OHIFDicomHtmlViewport;
|
||||
|
||||
@@ -3,6 +3,22 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.51.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.51.2...@ohif/extension-dicom-microscopy@0.51.3) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.51.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.51.1...@ohif/extension-dicom-microscopy@0.51.2) (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.51.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-microscopy@0.51.0...@ohif/extension-dicom-microscopy@0.51.1) (2020-08-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-microscopy
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-microscopy",
|
||||
"version": "0.51.1",
|
||||
"version": "0.51.3",
|
||||
"description": "OHIF extension for Dicom Microscopy",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -12,11 +12,13 @@ const DicomMicroscopySopClassHandler = {
|
||||
getDisplaySetFromSeries(series, study, dicomWebClient) {
|
||||
const instance = series.getFirstInstance();
|
||||
|
||||
const metadata = instance.getData().metadata;
|
||||
const {
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
ContentDate,
|
||||
ContentTime,
|
||||
SeriesNumber,
|
||||
} = instance._instance.metadata;
|
||||
} = metadata;
|
||||
|
||||
// Note: We are passing the dicomweb client into each viewport!
|
||||
|
||||
@@ -28,9 +30,11 @@ const DicomMicroscopySopClassHandler = {
|
||||
SOPInstanceUID: instance.getSOPInstanceUID(),
|
||||
SeriesInstanceUID: series.getSeriesInstanceUID(),
|
||||
StudyInstanceUID: study.getStudyInstanceUID(),
|
||||
SeriesDescription,
|
||||
SeriesDate: ContentDate, // Map ContentDate/Time to SeriesTime for series list sorting.
|
||||
SeriesTime: ContentTime,
|
||||
SeriesNumber,
|
||||
metadata,
|
||||
};
|
||||
},
|
||||
};
|
||||
|
||||
@@ -1,5 +1,6 @@
|
||||
import React from 'react';
|
||||
import DicomMicroscopySopClassHandler from './DicomMicroscopySopClassHandler.js';
|
||||
import { version } from '../package.json';
|
||||
|
||||
const Component = React.lazy(() => {
|
||||
return import('./DicomMicroscopyViewport');
|
||||
@@ -18,6 +19,7 @@ export default {
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'microscopy',
|
||||
version,
|
||||
|
||||
getViewportModule() {
|
||||
return DicomMicroscopyViewport;
|
||||
|
||||
@@ -3,6 +3,22 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.0.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.0.5...@ohif/extension-dicom-pdf@1.0.6) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.0.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.0.4...@ohif/extension-dicom-pdf@1.0.5) (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.0.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-pdf@1.0.3...@ohif/extension-dicom-pdf@1.0.4) (2020-08-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-pdf
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-pdf",
|
||||
"version": "1.0.4",
|
||||
"version": "1.0.6",
|
||||
"description": "OHIF extension for Dicom PDF",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -12,11 +12,13 @@ const OHIFDicomPDFSopClassHandler = {
|
||||
getDisplaySetFromSeries(series, study, dicomWebClient, authorizationHeaders) {
|
||||
const instance = series.getFirstInstance();
|
||||
|
||||
const metadata = instance.getData().metadata;
|
||||
const {
|
||||
ContentDate,
|
||||
ContentTime,
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
} = instance._instance.metadata;
|
||||
} = metadata;
|
||||
|
||||
return {
|
||||
plugin: 'pdf',
|
||||
@@ -27,9 +29,11 @@ const OHIFDicomPDFSopClassHandler = {
|
||||
SOPInstanceUID: instance.getSOPInstanceUID(),
|
||||
SeriesInstanceUID: series.getSeriesInstanceUID(),
|
||||
StudyInstanceUID: study.getStudyInstanceUID(),
|
||||
SeriesDescription,
|
||||
SeriesDate: ContentDate, // Map ContentDate/Time to SeriesTime for series list sorting.
|
||||
SeriesTime: ContentTime,
|
||||
SeriesNumber,
|
||||
metadata,
|
||||
authorizationHeaders: authorizationHeaders,
|
||||
};
|
||||
},
|
||||
|
||||
@@ -1,5 +1,6 @@
|
||||
import React from 'react';
|
||||
import OHIFDicomPDFSopClassHandler from './OHIFDicomPDFSopClassHandler.js';
|
||||
import { version } from '../package.json';
|
||||
|
||||
const Component = React.lazy(() => {
|
||||
return import('./ConnectedOHIFDicomPDFViewer');
|
||||
@@ -18,6 +19,7 @@ export default {
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'pdf',
|
||||
version,
|
||||
getViewportModule() {
|
||||
return ConnectedOHIFDicomPDFViewer;
|
||||
},
|
||||
|
||||
@@ -3,6 +3,38 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.4.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.4.4...@ohif/extension-dicom-rt@0.4.5) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.4.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.4.3...@ohif/extension-dicom-rt@0.4.4) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.4.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.4.2...@ohif/extension-dicom-rt@0.4.3) (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.4.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.4.1...@ohif/extension-dicom-rt@0.4.2) (2020-09-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.4.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-rt@0.4.0...@ohif/extension-dicom-rt@0.4.1) (2020-08-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-rt
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-rt",
|
||||
"version": "0.4.1",
|
||||
"version": "0.4.5",
|
||||
"description": "OHIF extension for rendering DICOM RTSTRUCTs on top of cornerstone images.",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -31,7 +31,7 @@
|
||||
"@ohif/core": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"dcmjs": "0.16.0",
|
||||
"dcmjs": "0.16.3",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
|
||||
@@ -56,6 +56,7 @@ const OHIFDicomRTStructSopClassHandler = {
|
||||
SeriesTime,
|
||||
SeriesNumber,
|
||||
SeriesDescription,
|
||||
metadata,
|
||||
};
|
||||
|
||||
if (!metadata.ReferencedSeriesSequence) {
|
||||
|
||||
@@ -12,6 +12,9 @@ import StructureSetItem from '../StructureSetItem/StructureSetItem';
|
||||
import RTPanelSettings from '../RTSettings/RTSettings';
|
||||
import PanelSection from '../PanelSection/PanelSection';
|
||||
import LoadingIndicator from '../LoadingIndicator/LoadingIndicator';
|
||||
import TOOL_NAMES from '../../utils/toolNames';
|
||||
|
||||
const { RTSTRUCT_DISPLAY_TOOL } = TOOL_NAMES;
|
||||
|
||||
const { studyMetadataManager } = utils;
|
||||
|
||||
@@ -144,13 +147,16 @@ const RTPanel = ({
|
||||
if (isCornerstone()) {
|
||||
const enabledElements = cornerstone.getEnabledElements();
|
||||
const element = enabledElements[activeIndex].element;
|
||||
const toolState = cornerstoneTools.getToolState(element, 'stack');
|
||||
const stackToolState = cornerstoneTools.getToolState(
|
||||
element,
|
||||
'stack'
|
||||
);
|
||||
|
||||
if (!toolState) {
|
||||
if (!stackToolState) {
|
||||
return;
|
||||
}
|
||||
|
||||
const imageIds = toolState.data[0].imageIds;
|
||||
const imageIds = stackToolState.data[0].imageIds;
|
||||
|
||||
const module = cornerstoneTools.getModule('rtstruct');
|
||||
const imageId = module.getters.imageIdOfCenterFrameOfROIContour(
|
||||
@@ -159,6 +165,18 @@ const RTPanel = ({
|
||||
imageIds
|
||||
);
|
||||
|
||||
const toolState = cornerstoneTools.globalImageIdSpecificToolStateManager.saveToolState();
|
||||
const imageIdSpecificToolState = toolState[imageId];
|
||||
|
||||
const rtstructData =
|
||||
imageIdSpecificToolState[RTSTRUCT_DISPLAY_TOOL];
|
||||
|
||||
const specificData = rtstructData.data.find(
|
||||
rtData => rtData.ROINumber === ROINumber
|
||||
);
|
||||
|
||||
specificData.highlight = true;
|
||||
|
||||
const frameIndex = imageIds.indexOf(imageId);
|
||||
const SOPInstanceUID = cornerstone.metaData.get(
|
||||
'SOPInstanceUID',
|
||||
|
||||
@@ -1,15 +1,16 @@
|
||||
import React from 'react';
|
||||
|
||||
import init from './init.js';
|
||||
import sopClassHandlerModule from './OHIFDicomRTStructSopClassHandler';
|
||||
import id from './id.js';
|
||||
import RTPanel from './components/RTPanel/RTPanel';
|
||||
import { version } from '../package.json';
|
||||
|
||||
export default {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id,
|
||||
version,
|
||||
|
||||
/**
|
||||
*
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
import { importInternal, getToolState, toolColors } from 'cornerstone-tools';
|
||||
|
||||
import TOOL_NAMES from '../utils/toolNames';
|
||||
import drawCanvasCrosshairs from '../utils/drawCanvasCrosshairs';
|
||||
|
||||
// Cornerstone 3rd party dev kit imports
|
||||
const draw = importInternal('drawing/draw');
|
||||
@@ -37,11 +37,17 @@ export default class RTStructDisplayTool extends BaseTool {
|
||||
return;
|
||||
}
|
||||
|
||||
const { lineWidth, opacity } = rtstructModule.configuration;
|
||||
const {
|
||||
lineWidth,
|
||||
opacity,
|
||||
highlightOpacity,
|
||||
} = rtstructModule.configuration;
|
||||
|
||||
// We have tool data for this element - iterate over each one and draw it
|
||||
const context = getNewContext(eventData.canvasContext.canvas);
|
||||
|
||||
let crossHairCenter;
|
||||
|
||||
for (let i = 0; i < toolState.data.length; i++) {
|
||||
const data = toolState.data[i];
|
||||
|
||||
@@ -75,27 +81,51 @@ export default class RTStructDisplayTool extends BaseTool {
|
||||
colorArray[2]
|
||||
},${opacity})`;
|
||||
|
||||
let highlight = data.highlight;
|
||||
const options = { color, lineWidth };
|
||||
|
||||
if (highlight) {
|
||||
crossHairCenter = { x: 0, y: 0 };
|
||||
|
||||
points.forEach(point => {
|
||||
crossHairCenter.x += point.x;
|
||||
crossHairCenter.y += point.y;
|
||||
});
|
||||
|
||||
crossHairCenter.x /= points.length;
|
||||
crossHairCenter.y /= points.length;
|
||||
|
||||
// TODO: Disabling hightlight for now, it'd be good to bring it back
|
||||
// when we have a good way of doing this for SEG.
|
||||
|
||||
// options.fillStyle = color = `rgba(${colorArray[0]},${colorArray[1]},${
|
||||
// colorArray[2]
|
||||
// },${highlightOpacity})`;
|
||||
|
||||
// Draw highlight lines.
|
||||
|
||||
delete data.highlight; // Don't highlight on next render.
|
||||
}
|
||||
|
||||
switch (data.type) {
|
||||
case 'CLOSED_PLANAR':
|
||||
this._renderClosedPlanar(context, eventData.element, points, {
|
||||
color,
|
||||
lineWidth,
|
||||
});
|
||||
this._renderClosedPlanar(context, eventData.element, points, options);
|
||||
break;
|
||||
case 'POINT':
|
||||
this._renderPoint(context, eventData.element, points, {
|
||||
color,
|
||||
lineWidth,
|
||||
});
|
||||
this._renderPoint(context, eventData.element, points, options);
|
||||
break;
|
||||
case 'OPEN_PLANAR':
|
||||
this._renderOpenPlanar(context, eventData.element, points, {
|
||||
color,
|
||||
lineWidth,
|
||||
});
|
||||
this._renderOpenPlanar(context, eventData.element, points, options);
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
if (crossHairCenter) {
|
||||
drawCanvasCrosshairs(eventData, crossHairCenter, {
|
||||
color: toolColors.getActiveColor(),
|
||||
lineWidth: 1,
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
_renderClosedPlanar(context, element, points, options) {
|
||||
|
||||
@@ -13,7 +13,8 @@ function refreshViewport() {
|
||||
|
||||
const configuration = {
|
||||
lineWidth: 3,
|
||||
opacity: 1.0,
|
||||
opacity: 0.75,
|
||||
highlightOpacity: 0.5,
|
||||
};
|
||||
|
||||
const state = {
|
||||
|
||||
@@ -0,0 +1,56 @@
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import cornerstoneTools from 'cornerstone-tools';
|
||||
|
||||
const { importInternal } = cornerstoneTools;
|
||||
const draw = importInternal('drawing/draw');
|
||||
const drawLine = importInternal('drawing/drawLine');
|
||||
const getNewContext = importInternal('drawing/getNewContext');
|
||||
|
||||
export default function _drawCanvasCrosshairs(eventData, center, options) {
|
||||
const context = getNewContext(eventData.canvasContext.canvas);
|
||||
const { element } = eventData;
|
||||
|
||||
const centerCanvas = cornerstone.pixelToCanvas(element, center);
|
||||
|
||||
const { clientWidth: width, clientHeight: height } = element;
|
||||
|
||||
const offset = 10;
|
||||
|
||||
draw(context, context => {
|
||||
drawLine(
|
||||
context,
|
||||
element,
|
||||
{ x: centerCanvas.x + offset, y: centerCanvas.y },
|
||||
{ x: width, y: centerCanvas.y },
|
||||
options,
|
||||
'canvas'
|
||||
);
|
||||
|
||||
drawLine(
|
||||
context,
|
||||
element,
|
||||
{ x: centerCanvas.x - offset, y: centerCanvas.y },
|
||||
{ x: 0, y: centerCanvas.y },
|
||||
options,
|
||||
'canvas'
|
||||
);
|
||||
|
||||
drawLine(
|
||||
context,
|
||||
element,
|
||||
{ x: centerCanvas.x, y: centerCanvas.y + offset },
|
||||
{ x: centerCanvas.x, y: height },
|
||||
options,
|
||||
'canvas'
|
||||
);
|
||||
|
||||
drawLine(
|
||||
context,
|
||||
element,
|
||||
{ x: centerCanvas.x, y: centerCanvas.y - offset },
|
||||
{ x: centerCanvas.x, y: 0 },
|
||||
options,
|
||||
'canvas'
|
||||
);
|
||||
});
|
||||
}
|
||||
@@ -3,6 +3,38 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.4.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.4.4...@ohif/extension-dicom-segmentation@0.4.5) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.4.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.4.3...@ohif/extension-dicom-segmentation@0.4.4) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.4.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.4.2...@ohif/extension-dicom-segmentation@0.4.3) (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.4.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.4.1...@ohif/extension-dicom-segmentation@0.4.2) (2020-09-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.4.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-segmentation@0.4.0...@ohif/extension-dicom-segmentation@0.4.1) (2020-08-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-segmentation
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-segmentation",
|
||||
"version": "0.4.1",
|
||||
"version": "0.4.5",
|
||||
"description": "OHIF extension for viewing segmentations in the 2D MPR view",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -31,7 +31,7 @@
|
||||
"@ohif/core": "^0.50.0",
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"dcmjs": "0.16.0",
|
||||
"dcmjs": "0.16.3",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^16.8.6",
|
||||
"react-dom": "^16.8.6"
|
||||
|
||||
@@ -5,6 +5,7 @@ import cornerstone from 'cornerstone-core';
|
||||
import moment from 'moment';
|
||||
import { utils, log } from '@ohif/core';
|
||||
import { ScrollableArea, TableList, Icon } from '@ohif/ui';
|
||||
import DICOMSegTempCrosshairsTool from '../../tools/DICOMSegTempCrosshairsTool';
|
||||
|
||||
import setActiveLabelmap from '../../utils/setActiveLabelMap';
|
||||
import refreshViewports from '../../utils/refreshViewports';
|
||||
@@ -334,6 +335,12 @@ const SegmentationPanel = ({
|
||||
imageId
|
||||
);
|
||||
|
||||
DICOMSegTempCrosshairsTool.addCrosshair(
|
||||
element,
|
||||
imageId,
|
||||
segmentNumber
|
||||
);
|
||||
|
||||
onSegmentItemClick({
|
||||
StudyInstanceUID,
|
||||
SOPInstanceUID,
|
||||
|
||||
@@ -28,12 +28,12 @@ export default function getSopClassHandlerModule({ servicesManager }) {
|
||||
const {
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SeriesNumber,
|
||||
SeriesDescription,
|
||||
FrameOfReferenceUID,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
SeriesNumber,
|
||||
} = metadata;
|
||||
|
||||
const segDisplaySet = {
|
||||
@@ -55,6 +55,7 @@ export default function getSopClassHandlerModule({ servicesManager }) {
|
||||
SeriesTime,
|
||||
SeriesNumber,
|
||||
SeriesDescription,
|
||||
metadata,
|
||||
};
|
||||
|
||||
segDisplaySet.getSourceDisplaySet = function(studies) {
|
||||
|
||||
@@ -1,4 +1,7 @@
|
||||
import setActiveLabelmap from './utils/setActiveLabelMap';
|
||||
import { classes } from '@ohif/core';
|
||||
|
||||
const { ImageSet } = classes;
|
||||
|
||||
export default function getSourceDisplaySet(studies, segDisplaySet) {
|
||||
const referencedDisplaySet = _getReferencedDisplaySet(segDisplaySet, studies);
|
||||
@@ -19,15 +22,43 @@ const _getReferencedDisplaySet = (segDisplaySet, studies) => {
|
||||
ds => ds.displaySetInstanceUID !== segDisplaySet.displaySetInstanceUID
|
||||
);
|
||||
|
||||
const ReferencedSeriesSequence = Array.isArray(
|
||||
segDisplaySet.metadata.ReferencedSeriesSequence
|
||||
)
|
||||
? segDisplaySet.metadata.ReferencedSeriesSequence
|
||||
: [segDisplaySet.metadata.ReferencedSeriesSequence];
|
||||
const { metadata } = segDisplaySet;
|
||||
|
||||
const referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
|
||||
ReferencedSeries => ReferencedSeries.SeriesInstanceUID
|
||||
);
|
||||
let referencedSeriesInstanceUIDs;
|
||||
|
||||
if (metadata.ReferencedSeriesSequence) {
|
||||
const ReferencedSeriesSequence = _toArray(
|
||||
metadata.ReferencedSeriesSequence
|
||||
);
|
||||
|
||||
referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
|
||||
ReferencedSeries => ReferencedSeries.SeriesInstanceUID
|
||||
);
|
||||
} else {
|
||||
const { PerFrameFunctionalGroupsSequence } = metadata;
|
||||
|
||||
let SourceImageSequence;
|
||||
|
||||
if (metadata.SourceImageSequence) {
|
||||
SourceImageSequence = metadata.SourceImageSequence;
|
||||
} else {
|
||||
const firstFunctionalGroups = _toArray(
|
||||
PerFrameFunctionalGroupsSequence
|
||||
)[0];
|
||||
const { DerivationImageSequence } = firstFunctionalGroups;
|
||||
|
||||
SourceImageSequence = DerivationImageSequence;
|
||||
}
|
||||
|
||||
const firstSourceImage = _toArray(SourceImageSequence)[0];
|
||||
|
||||
const { ReferencedSOPInstanceUID } = firstSourceImage;
|
||||
|
||||
referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromSOPInstanceUID(
|
||||
otherDisplaySets,
|
||||
ReferencedSOPInstanceUID
|
||||
);
|
||||
}
|
||||
|
||||
const referencedDisplaySet = otherDisplaySets.find(ds =>
|
||||
referencedSeriesInstanceUIDs.includes(ds.SeriesInstanceUID)
|
||||
@@ -35,3 +66,23 @@ const _getReferencedDisplaySet = (segDisplaySet, studies) => {
|
||||
|
||||
return referencedDisplaySet;
|
||||
};
|
||||
|
||||
const _findReferencedSeriesInstanceUIDsFromSOPInstanceUID = (
|
||||
displaySets,
|
||||
SOPInstanceUID
|
||||
) => {
|
||||
const imageSets = displaySets.filter(ds => ds instanceof ImageSet);
|
||||
|
||||
for (let i = 0; i < imageSets.length; i++) {
|
||||
const { images } = imageSets[i];
|
||||
for (let j = 0; j < images.length; j++) {
|
||||
if (images[j].SOPInstanceUID === SOPInstanceUID) {
|
||||
return [images[j].getData().metadata.SeriesInstanceUID];
|
||||
}
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
function _toArray(arrayOrObject) {
|
||||
return Array.isArray(arrayOrObject) ? arrayOrObject : [arrayOrObject];
|
||||
}
|
||||
@@ -1,15 +1,16 @@
|
||||
import React from 'react';
|
||||
|
||||
import init from './init.js';
|
||||
import toolbarModule from './toolbarModule.js';
|
||||
import getSopClassHandlerModule from './getOHIFDicomSegSopClassHandler.js';
|
||||
import SegmentationPanel from './components/SegmentationPanel/SegmentationPanel.js';
|
||||
import { version } from '../package.json';
|
||||
|
||||
export default {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'com.ohif.dicom-segmentation',
|
||||
version,
|
||||
|
||||
/**
|
||||
*
|
||||
|
||||
@@ -1,4 +1,5 @@
|
||||
import csTools from 'cornerstone-tools';
|
||||
import DICOMSegTempCrosshairsTool from './tools/DICOMSegTempCrosshairsTool';
|
||||
|
||||
/**
|
||||
*
|
||||
@@ -17,4 +18,6 @@ export default function init({ servicesManager, configuration = {} }) {
|
||||
alwaysEraseOnClick: true,
|
||||
},
|
||||
});
|
||||
|
||||
csTools.addTool(DICOMSegTempCrosshairsTool);
|
||||
}
|
||||
@@ -0,0 +1,127 @@
|
||||
import cornerstoneTools, {
|
||||
importInternal,
|
||||
getToolState,
|
||||
toolColors,
|
||||
getModule,
|
||||
globalImageIdSpecificToolStateManager,
|
||||
} from 'cornerstone-tools';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import drawCanvasCrosshairs from '../utils/drawCanvasCrosshairs';
|
||||
import TOOL_NAMES from './TOOL_NAMES';
|
||||
|
||||
const { DICOM_SEG_TEMP_CROSSHAIRS_TOOL } = TOOL_NAMES;
|
||||
const { getters } = getModule('segmentation');
|
||||
|
||||
// Cornerstone 3rd party dev kit imports
|
||||
const BaseTool = importInternal('base/BaseTool');
|
||||
|
||||
/**
|
||||
* @class RTStructDisplayTool - Renders RTSTRUCT data in a read only manner (i.e. as an overlay).
|
||||
* @extends cornerstoneTools.BaseTool
|
||||
*/
|
||||
export default class DICOMSegTempCrosshairsTool extends BaseTool {
|
||||
constructor(props = {}) {
|
||||
const defaultProps = {
|
||||
mixins: ['enabledOrDisabledBinaryTool'],
|
||||
name: DICOM_SEG_TEMP_CROSSHAIRS_TOOL,
|
||||
};
|
||||
|
||||
const initialProps = Object.assign(defaultProps, props);
|
||||
|
||||
super(initialProps);
|
||||
|
||||
this._rtStructModule = cornerstoneTools.getModule('rtstruct');
|
||||
}
|
||||
|
||||
renderToolData(evt) {
|
||||
const eventData = evt.detail;
|
||||
const { element } = eventData;
|
||||
const toolState = getToolState(evt.currentTarget, this.name);
|
||||
|
||||
if (!toolState) {
|
||||
return;
|
||||
}
|
||||
|
||||
// We have tool data for this element - iterate over each one and draw it
|
||||
|
||||
for (let i = 0; i < toolState.data.length; i++) {
|
||||
const data = toolState.data[i];
|
||||
const crossHairCenter = data.center;
|
||||
|
||||
drawCanvasCrosshairs(eventData, crossHairCenter, {
|
||||
color: toolColors.getActiveColor(),
|
||||
lineWidth: 1,
|
||||
});
|
||||
|
||||
// Remove the crosshairs, we only render them for one redraw.
|
||||
toolState.data.pop();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
DICOMSegTempCrosshairsTool.addCrosshair = (element, imageId, segmentNumber) => {
|
||||
const labelmap3D = getters.labelmap3D(element);
|
||||
const stackToolState = cornerstoneTools.getToolState(element, 'stack');
|
||||
const enabledElement = cornerstone.getEnabledElement(element);
|
||||
|
||||
const { rows, columns } = enabledElement.image;
|
||||
|
||||
if (!stackToolState) {
|
||||
return;
|
||||
}
|
||||
|
||||
const imageIds = stackToolState.data[0].imageIds;
|
||||
const imageIdIndex = imageIds.findIndex(imgId => imgId === imageId);
|
||||
|
||||
const labelmap2D = labelmap3D.labelmaps2D[imageIdIndex];
|
||||
const { pixelData } = labelmap2D;
|
||||
|
||||
let xCenter = 0;
|
||||
let yCenter = 0;
|
||||
|
||||
let count = 0;
|
||||
|
||||
for (let y = 0; y < rows; y++) {
|
||||
for (let x = 0; x < columns; x++) {
|
||||
if (pixelData[y * columns + x] === segmentNumber) {
|
||||
count++;
|
||||
xCenter += x + 0.5;
|
||||
yCenter += y + 0.5;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
xCenter /= count;
|
||||
yCenter /= count;
|
||||
|
||||
const globalToolState = globalImageIdSpecificToolStateManager.saveToolState();
|
||||
|
||||
if (!globalToolState[imageId]) {
|
||||
globalToolState[imageId] = {};
|
||||
}
|
||||
|
||||
const imageIdSpecificToolState = globalToolState[imageId];
|
||||
|
||||
if (!imageIdSpecificToolState[DICOM_SEG_TEMP_CROSSHAIRS_TOOL]) {
|
||||
imageIdSpecificToolState[DICOM_SEG_TEMP_CROSSHAIRS_TOOL] = { data: [] };
|
||||
} else if (!imageIdSpecificToolState[DICOM_SEG_TEMP_CROSSHAIRS_TOOL].data) {
|
||||
imageIdSpecificToolState[DICOM_SEG_TEMP_CROSSHAIRS_TOOL].data = [];
|
||||
}
|
||||
|
||||
const toolSpecificData =
|
||||
imageIdSpecificToolState[DICOM_SEG_TEMP_CROSSHAIRS_TOOL].data;
|
||||
|
||||
toolSpecificData.push({ center: { x: xCenter, y: yCenter }, segmentNumber });
|
||||
|
||||
// Enable the tool if not enabled for the element.
|
||||
|
||||
const tool = cornerstoneTools.getToolForElement(
|
||||
element,
|
||||
DICOM_SEG_TEMP_CROSSHAIRS_TOOL
|
||||
);
|
||||
|
||||
if (tool.mode !== 'enabled') {
|
||||
// If not already active or passive, set passive so contours render.
|
||||
cornerstoneTools.setToolEnabled(DICOM_SEG_TEMP_CROSSHAIRS_TOOL);
|
||||
}
|
||||
};
|
||||
@@ -0,0 +1,5 @@
|
||||
const TOOL_NAMES = {
|
||||
DICOM_SEG_TEMP_CROSSHAIRS_TOOL: 'DICOMSegTempCrosshairsTool',
|
||||
};
|
||||
|
||||
export default TOOL_NAMES;
|
||||
@@ -0,0 +1,56 @@
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import cornerstoneTools from 'cornerstone-tools';
|
||||
|
||||
const { importInternal } = cornerstoneTools;
|
||||
const draw = importInternal('drawing/draw');
|
||||
const drawLine = importInternal('drawing/drawLine');
|
||||
const getNewContext = importInternal('drawing/getNewContext');
|
||||
|
||||
export default function _drawCanvasCrosshairs(eventData, center, options) {
|
||||
const context = getNewContext(eventData.canvasContext.canvas);
|
||||
const { element } = eventData;
|
||||
|
||||
const centerCanvas = cornerstone.pixelToCanvas(element, center);
|
||||
|
||||
const { clientWidth: width, clientHeight: height } = element;
|
||||
|
||||
const offset = 10;
|
||||
|
||||
draw(context, context => {
|
||||
drawLine(
|
||||
context,
|
||||
element,
|
||||
{ x: centerCanvas.x + offset, y: centerCanvas.y },
|
||||
{ x: width, y: centerCanvas.y },
|
||||
options,
|
||||
'canvas'
|
||||
);
|
||||
|
||||
drawLine(
|
||||
context,
|
||||
element,
|
||||
{ x: centerCanvas.x - offset, y: centerCanvas.y },
|
||||
{ x: 0, y: centerCanvas.y },
|
||||
options,
|
||||
'canvas'
|
||||
);
|
||||
|
||||
drawLine(
|
||||
context,
|
||||
element,
|
||||
{ x: centerCanvas.x, y: centerCanvas.y + offset },
|
||||
{ x: centerCanvas.x, y: height },
|
||||
options,
|
||||
'canvas'
|
||||
);
|
||||
|
||||
drawLine(
|
||||
context,
|
||||
element,
|
||||
{ x: centerCanvas.x, y: centerCanvas.y - offset },
|
||||
{ x: centerCanvas.x, y: 0 },
|
||||
options,
|
||||
'canvas'
|
||||
);
|
||||
});
|
||||
}
|
||||
@@ -0,0 +1,8 @@
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
return webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
|
||||
};
|
||||
@@ -0,0 +1,38 @@
|
||||
const merge = require('webpack-merge');
|
||||
const path = require('path');
|
||||
const webpackCommon = require('./../../../.webpack/webpack.commonjs.js');
|
||||
const pkg = require('./../package.json');
|
||||
|
||||
const ROOT_DIR = path.join(__dirname, './..');
|
||||
const SRC_DIR = path.join(__dirname, '../src');
|
||||
const DIST_DIR = path.join(__dirname, '../dist');
|
||||
|
||||
module.exports = (env, argv) => {
|
||||
const commonConfig = webpackCommon(env, argv, { SRC_DIR, DIST_DIR });
|
||||
|
||||
return merge(commonConfig, {
|
||||
devtool: 'source-map',
|
||||
stats: {
|
||||
colors: true,
|
||||
hash: true,
|
||||
timings: true,
|
||||
assets: true,
|
||||
chunks: false,
|
||||
chunkModules: false,
|
||||
modules: false,
|
||||
children: false,
|
||||
warnings: true,
|
||||
},
|
||||
optimization: {
|
||||
minimize: true,
|
||||
sideEffects: true,
|
||||
},
|
||||
output: {
|
||||
path: ROOT_DIR,
|
||||
library: 'OHIFExtDicomP10Downloader',
|
||||
libraryTarget: 'umd',
|
||||
libraryExport: 'default',
|
||||
filename: pkg.main,
|
||||
},
|
||||
});
|
||||
};
|
||||
@@ -0,0 +1,8 @@
|
||||
# Change Log
|
||||
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## 0.0.2 (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-dicom-tag-browser
|
||||
@@ -0,0 +1,21 @@
|
||||
MIT License
|
||||
|
||||
Copyright (c) 2018 Open Health Imaging Foundation
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||
of this software and associated documentation files (the "Software"), to deal
|
||||
in the Software without restriction, including without limitation the rights
|
||||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||
copies of the Software, and to permit persons to whom the Software is
|
||||
furnished to do so, subject to the following conditions:
|
||||
|
||||
The above copyright notice and this permission notice shall be included in all
|
||||
copies or substantial portions of the Software.
|
||||
|
||||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
||||
SOFTWARE.
|
||||
@@ -0,0 +1 @@
|
||||
# @ohif/extension-dicom-tag-browser
|
||||
@@ -0,0 +1,40 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-tag-browser",
|
||||
"version": "0.0.2",
|
||||
"description": "OHIF extension for checking DICOM headers.",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
"repository": "OHIF/Viewers",
|
||||
"main": "dist/index.umd.js",
|
||||
"module": "src/index.js",
|
||||
"publishConfig": {
|
||||
"access": "public"
|
||||
},
|
||||
"engines": {
|
||||
"node": ">=10",
|
||||
"npm": ">=6",
|
||||
"yarn": ">=1.16.0"
|
||||
},
|
||||
"files": [
|
||||
"dist",
|
||||
"README.md"
|
||||
],
|
||||
"scripts": {
|
||||
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --debug --output-pathinfo",
|
||||
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
|
||||
"build:package": "yarn run build",
|
||||
"prepublishOnly": "yarn run build",
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "^2.6.0",
|
||||
"dcmjs": "0.16.0",
|
||||
"react": "^16.8.6"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"dicomweb-client": "^0.6.0",
|
||||
"moment": "2.24.0",
|
||||
"react-select": "^3.0.8"
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,58 @@
|
||||
import React from 'react';
|
||||
import Select from 'react-select';
|
||||
|
||||
const DicomBrowserSelect = ({ value, formatOptionLabel, options }) => (
|
||||
<Select
|
||||
value={value}
|
||||
formatOptionLabel={formatOptionLabel}
|
||||
styles={dicomBrowserSelectStyles}
|
||||
options={options}
|
||||
/>
|
||||
);
|
||||
|
||||
const computedstyle = getComputedStyle(document.body);
|
||||
const uiGrayDarker = computedstyle.getPropertyValue('--ui-gray-darker');
|
||||
const activeColor = computedstyle.getPropertyValue('--active-color');
|
||||
const defaultColor = computedstyle.getPropertyValue('--default-color');
|
||||
const uiGrayDark = computedstyle.getPropertyValue('--ui-gray-dark');
|
||||
|
||||
const dicomBrowserSelectStyles = {
|
||||
singleValue: (base, state) => ({
|
||||
...base,
|
||||
width: '100%',
|
||||
}),
|
||||
control: (base, state) => ({
|
||||
...base,
|
||||
cursor: 'pointer',
|
||||
background: uiGrayDarker,
|
||||
borderRadius: state.isFocused ? '5px 5px 5px 5px' : 5,
|
||||
borderColor: state.isFocused ? activeColor : defaultColor,
|
||||
minHeight: '50px',
|
||||
'&:hover': {
|
||||
borderColor: activeColor,
|
||||
},
|
||||
}),
|
||||
menu: base => ({
|
||||
...base,
|
||||
borderRadius: 5,
|
||||
background: uiGrayDarker,
|
||||
}),
|
||||
option: (base, state) => ({
|
||||
...base,
|
||||
cursor: 'pointer',
|
||||
'&:first-of-type': {
|
||||
borderTopLeftRadius: 5,
|
||||
borderTopRightRadius: 5,
|
||||
},
|
||||
'&:last-of-type': {
|
||||
borderBottomLeftRadius: 5,
|
||||
borderBottomRightRadius: 5,
|
||||
},
|
||||
background: state.isSelected ? uiGrayDark : uiGrayDarker,
|
||||
'&:hover': {
|
||||
background: uiGrayDark,
|
||||
},
|
||||
}),
|
||||
};
|
||||
|
||||
export default DicomBrowserSelect;
|
||||
@@ -0,0 +1,25 @@
|
||||
.dcmseg-segmentation-item {
|
||||
display: flex;
|
||||
justify-content: start;
|
||||
margin: 0;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-item .segmentation-meta {
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
flex-grow: 1;
|
||||
overflow: hidden;
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-item .segmentation-meta-title {
|
||||
text-overflow: ellipsis;
|
||||
overflow: hidden;
|
||||
white-space: nowrap;
|
||||
color: white;
|
||||
max-width: calc(100% - 30px);
|
||||
}
|
||||
|
||||
.dcmseg-segmentation-item .segmentation-meta-description {
|
||||
font-size: 12px;
|
||||
color: var(--text-secondary-color);
|
||||
}
|
||||
@@ -0,0 +1,27 @@
|
||||
import React from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
|
||||
import './DicomBrowserSelectItem.css';
|
||||
|
||||
const DicomBrowserSelectItem = ({ onClick, title, description }) => {
|
||||
return (
|
||||
<li className="dcmseg-segmentation-item" onClick={onClick}>
|
||||
<div className="segmentation-meta">
|
||||
<div className="segmentation-meta-title">{title}</div>
|
||||
<div className="segmentation-meta-description">{description}</div>
|
||||
</div>
|
||||
</li>
|
||||
);
|
||||
};
|
||||
|
||||
DicomBrowserSelectItem.propTypes = {
|
||||
onClick: PropTypes.func.isRequired,
|
||||
title: PropTypes.string.isRequired,
|
||||
description: PropTypes.string.isRequired,
|
||||
};
|
||||
|
||||
DicomBrowserSelectItem.defaultProps = {
|
||||
description: '',
|
||||
};
|
||||
|
||||
export default DicomBrowserSelectItem;
|
||||
@@ -0,0 +1,27 @@
|
||||
.dicom-tag-browser-table {
|
||||
margin-right: auto;
|
||||
margin-left: auto;
|
||||
}
|
||||
|
||||
.dicom-tag-browser-table td {
|
||||
padding-left: 10px;
|
||||
padding-right: 10px;
|
||||
color: var(--table-text-primary-color);
|
||||
border-top: 1px solid #ddd;
|
||||
white-space: nowrap;
|
||||
}
|
||||
|
||||
.dicom-tag-browser-table td.dicom-tag-browser-table-center {
|
||||
text-align: center;
|
||||
}
|
||||
|
||||
.dicom-tag-browser-table th {
|
||||
padding-left: 10px;
|
||||
padding-right: 10px;
|
||||
text-align: center;
|
||||
color: var(--active-color);
|
||||
}
|
||||
|
||||
.dicom-tag-browser-table th.dicom-tag-browser-table-left {
|
||||
text-align: left;
|
||||
}
|
||||
@@ -0,0 +1,228 @@
|
||||
import React, { useState } from 'react';
|
||||
import { classes } from '@ohif/core';
|
||||
import dcmjs from 'dcmjs';
|
||||
import DicomBrowserSelect from './DicomBrowserSelect';
|
||||
import moment from 'moment';
|
||||
import './DicomTagBrowser.css';
|
||||
import DicomBrowserSelectItem from './DicomBrowserSelectItem';
|
||||
|
||||
const { ImageSet } = classes;
|
||||
const { DicomMetaDictionary } = dcmjs.data;
|
||||
const { nameMap } = DicomMetaDictionary;
|
||||
|
||||
const DicomTagBrowser = ({ displaySets, displaySetInstanceUID }) => {
|
||||
const [
|
||||
activeDisplaySetInstanceUID,
|
||||
setActiveDisplaySetInstanceUID,
|
||||
] = useState(displaySetInstanceUID);
|
||||
const [activeInstance, setActiveInstance] = useState(0);
|
||||
|
||||
const activeDisplaySet = displaySets.find(
|
||||
ds => ds.displaySetInstanceUID === activeDisplaySetInstanceUID
|
||||
);
|
||||
|
||||
const displaySetList = displaySets.map(displaySet => {
|
||||
const {
|
||||
displaySetInstanceUID,
|
||||
SeriesDate,
|
||||
SeriesTime,
|
||||
SeriesNumber,
|
||||
SeriesDescription,
|
||||
Modality,
|
||||
} = displaySet;
|
||||
|
||||
/* Map to display representation */
|
||||
const dateStr = `${SeriesDate}:${SeriesTime}`.split('.')[0];
|
||||
const date = moment(dateStr, 'YYYYMMDD:HHmmss');
|
||||
const displayDate = date.format('ddd, MMM Do YYYY');
|
||||
|
||||
return {
|
||||
value: displaySetInstanceUID,
|
||||
title: `${SeriesNumber} (${Modality}): ${SeriesDescription}`,
|
||||
description: displayDate,
|
||||
onClick: () => {
|
||||
setActiveDisplaySetInstanceUID(displaySetInstanceUID);
|
||||
setActiveInstance(0);
|
||||
},
|
||||
};
|
||||
});
|
||||
|
||||
let metadata;
|
||||
const isImageStack = activeDisplaySet instanceof ImageSet;
|
||||
|
||||
let selectedInstanceValue;
|
||||
let instanceList;
|
||||
|
||||
if (isImageStack) {
|
||||
const { images } = activeDisplaySet;
|
||||
const image = images[activeInstance];
|
||||
|
||||
instanceList = images.map((image, index) => {
|
||||
const metadata = image.getData().metadata;
|
||||
|
||||
const { InstanceNumber } = metadata;
|
||||
|
||||
return {
|
||||
value: index,
|
||||
title: `Instance Number: ${InstanceNumber}`,
|
||||
description: '',
|
||||
onClick: () => {
|
||||
setActiveInstance(index);
|
||||
},
|
||||
};
|
||||
});
|
||||
|
||||
selectedInstanceValue = instanceList[activeInstance];
|
||||
|
||||
metadata = image.getData().metadata;
|
||||
} else {
|
||||
metadata = activeDisplaySet.metadata;
|
||||
}
|
||||
|
||||
const selectedDisplaySetValue = displaySetList.find(
|
||||
ds => ds.value === activeDisplaySetInstanceUID
|
||||
);
|
||||
|
||||
return (
|
||||
<div>
|
||||
<DicomBrowserSelect
|
||||
value={selectedDisplaySetValue}
|
||||
formatOptionLabel={DicomBrowserSelectItem}
|
||||
options={displaySetList}
|
||||
/>
|
||||
{isImageStack ? (
|
||||
<DicomBrowserSelect
|
||||
value={selectedInstanceValue}
|
||||
formatOptionLabel={DicomBrowserSelectItem}
|
||||
options={instanceList}
|
||||
/>
|
||||
) : null}
|
||||
<DicomTagTable instanceMetadata={metadata}></DicomTagTable>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
function DicomTagTable({ instanceMetadata }) {
|
||||
const rows = getRows(instanceMetadata);
|
||||
|
||||
return (
|
||||
<div>
|
||||
<table className="dicom-tag-browser-table">
|
||||
<tr>
|
||||
<th className="dicom-tag-browser-table-left">Tag</th>
|
||||
<th className="dicom-tag-browser-table-left">Value Representation</th>
|
||||
<th className="dicom-tag-browser-table-left">Keyword</th>
|
||||
<th className="dicom-tag-browser-table-left">Value</th>
|
||||
</tr>
|
||||
{rows.map(row => (
|
||||
<tr>
|
||||
<td>{row[0]}</td>
|
||||
<td>{row[1]}</td>
|
||||
<td>{row[2]}</td>
|
||||
<td>{row[3]}</td>
|
||||
</tr>
|
||||
))}
|
||||
</table>
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
function getRows(metadata, depth = 0) {
|
||||
// Tag, Type, Value, Keyword
|
||||
|
||||
const keywords = Object.keys(metadata);
|
||||
|
||||
let tagIndent = '';
|
||||
|
||||
for (let i = 0; i < depth; i++) {
|
||||
tagIndent += '>';
|
||||
}
|
||||
|
||||
const rows = [];
|
||||
|
||||
for (let i = 0; i < keywords.length; i++) {
|
||||
let keyword = keywords[i];
|
||||
|
||||
if (keyword === '_vrMap') {
|
||||
continue;
|
||||
}
|
||||
|
||||
const tagInfo = nameMap[keyword];
|
||||
|
||||
let value = metadata[keyword];
|
||||
|
||||
if (tagInfo && tagInfo.vr === 'SQ') {
|
||||
const sequenceAsArray = toArray(value);
|
||||
|
||||
// Push line defining the sequence
|
||||
rows.push([`${tagIndent}${tagInfo.tag}`, tagInfo.vr, keyword, '']);
|
||||
|
||||
if (value === null) {
|
||||
// Type 2 Sequence
|
||||
continue;
|
||||
}
|
||||
|
||||
sequenceAsArray.forEach(item => {
|
||||
const sequenceRows = getRows(item, depth + 1);
|
||||
|
||||
sequenceRows.forEach(row => {
|
||||
rows.push(row);
|
||||
});
|
||||
});
|
||||
|
||||
continue;
|
||||
}
|
||||
|
||||
if (Array.isArray(value)) {
|
||||
value = value.join('\\');
|
||||
}
|
||||
|
||||
if (typeof value === 'number') {
|
||||
value = value.toString();
|
||||
}
|
||||
|
||||
if (typeof value !== 'string') {
|
||||
if (value === null) {
|
||||
value = ' ';
|
||||
} else {
|
||||
if (typeof value === 'object') {
|
||||
if (value.InlineBinary) {
|
||||
value = 'Inline Binary';
|
||||
} else if (value.BulkDataURI) {
|
||||
value = `Bulk Data URI`; //: ${value.BulkDataURI}`;
|
||||
} else if (value.Alphabetic) {
|
||||
value = value.Alphabetic;
|
||||
} else {
|
||||
console.error('Unrecognised Value for element:');
|
||||
console.error(value);
|
||||
value = ' ';
|
||||
}
|
||||
} else {
|
||||
console.error('Unrecognised Value for element:');
|
||||
console.error(value);
|
||||
value = ' ';
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Remove retired tags
|
||||
keyword = keyword.replace('RETIRED_', '');
|
||||
|
||||
if (tagInfo) {
|
||||
rows.push([`${tagIndent}${tagInfo.tag}`, tagInfo.vr, keyword, value]);
|
||||
} else {
|
||||
// Private tag
|
||||
const tag = `(${keyword.substring(0, 4)},${keyword.substring(4, 8)})`;
|
||||
|
||||
rows.push([`${tagIndent}${tag}`, '', 'Private Tag', value]);
|
||||
}
|
||||
}
|
||||
|
||||
return rows;
|
||||
}
|
||||
|
||||
function toArray(objectOrArray) {
|
||||
return Array.isArray(objectOrArray) ? objectOrArray : [objectOrArray];
|
||||
}
|
||||
|
||||
export default DicomTagBrowser;
|
||||
@@ -0,0 +1,52 @@
|
||||
import { utils } from '@ohif/core';
|
||||
import React from 'react';
|
||||
import DicomTagBrowser from './components/DicomTagBrowser';
|
||||
|
||||
const { studyMetadataManager } = utils;
|
||||
|
||||
export default function getCommandsModule(servicesManager) {
|
||||
const actions = {
|
||||
openDICOMTagViewer({ viewports }) {
|
||||
const { activeViewportIndex, viewportSpecificData } = viewports;
|
||||
const activeViewportSpecificData =
|
||||
viewportSpecificData[activeViewportIndex];
|
||||
|
||||
const {
|
||||
StudyInstanceUID,
|
||||
displaySetInstanceUID,
|
||||
} = activeViewportSpecificData;
|
||||
|
||||
const studyMetadata = studyMetadataManager.get(StudyInstanceUID);
|
||||
const displaySets = studyMetadata.getDisplaySets();
|
||||
|
||||
const { UIModalService } = servicesManager.services;
|
||||
|
||||
const WrappedDicomTagBrowser = function() {
|
||||
return (
|
||||
<DicomTagBrowser
|
||||
displaySets={displaySets}
|
||||
displaySetInstanceUID={displaySetInstanceUID}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
UIModalService.show({
|
||||
content: WrappedDicomTagBrowser,
|
||||
title: `DICOM Tag Browser`,
|
||||
fullscreen: true,
|
||||
});
|
||||
},
|
||||
};
|
||||
|
||||
const definitions = {
|
||||
openDICOMTagViewer: {
|
||||
commandFn: actions.openDICOMTagViewer,
|
||||
storeContexts: ['servers', 'viewports'],
|
||||
},
|
||||
};
|
||||
|
||||
return {
|
||||
actions,
|
||||
definitions,
|
||||
};
|
||||
}
|
||||
@@ -0,0 +1,26 @@
|
||||
import getCommandsModule from './getCommandsModule';
|
||||
import toolbarModule from './toolbarModule';
|
||||
|
||||
/**
|
||||
* Constants
|
||||
*/
|
||||
|
||||
/**
|
||||
* Extension
|
||||
*/
|
||||
export default {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'dicom-tag-browser',
|
||||
|
||||
/**
|
||||
* MODULE GETTERS
|
||||
*/
|
||||
getCommandsModule({ servicesManager }) {
|
||||
return getCommandsModule(servicesManager);
|
||||
},
|
||||
getToolbarModule() {
|
||||
return toolbarModule;
|
||||
},
|
||||
};
|
||||
@@ -0,0 +1,20 @@
|
||||
const TOOLBAR_BUTTON_TYPES = {
|
||||
COMMAND: 'command',
|
||||
};
|
||||
|
||||
const definitions = [
|
||||
{
|
||||
id: 'TagBrowser',
|
||||
label: 'Tag Browser',
|
||||
icon: 'list',
|
||||
//
|
||||
type: TOOLBAR_BUTTON_TYPES.COMMAND,
|
||||
commandName: 'openDICOMTagViewer',
|
||||
context: 'VIEWER',
|
||||
},
|
||||
];
|
||||
|
||||
export default {
|
||||
definitions,
|
||||
defaultContext: 'VIEWER',
|
||||
};
|
||||
@@ -3,6 +3,14 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.2.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-lesion-tracker@0.2.0...@ohif/extension-lesion-tracker@0.2.1) (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-lesion-tracker
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.2.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-lesion-tracker@0.1.0...@ohif/extension-lesion-tracker@0.2.0) (2020-02-10)
|
||||
|
||||
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-lesion-tracker",
|
||||
"version": "0.2.0",
|
||||
"version": "0.2.1",
|
||||
"description": "OHIF extension for Lesion Tracker",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -1,10 +1,12 @@
|
||||
import MeasurementComparisonTable from './components/MeasurementComparisonTable';
|
||||
import { version } from '../package.json';
|
||||
|
||||
export default {
|
||||
/**
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'lesion-tracker',
|
||||
version,
|
||||
|
||||
/**
|
||||
* @param {object} params
|
||||
@@ -26,7 +28,7 @@ export default {
|
||||
component: MeasurementComparisonTable,
|
||||
},
|
||||
],
|
||||
defaultContext: ['VIEWER']
|
||||
defaultContext: ['VIEWER'],
|
||||
};
|
||||
},
|
||||
|
||||
|
||||
@@ -3,6 +3,46 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.7.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.7.6...@ohif/extension-vtk@1.7.7) (2020-09-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.7.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.7.5...@ohif/extension-vtk@1.7.6) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.7.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.7.4...@ohif/extension-vtk@1.7.5) (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.7.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.7.3...@ohif/extension-vtk@1.7.4) (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.7.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.7.2...@ohif/extension-vtk@1.7.3) (2020-09-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.7.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@1.7.1...@ohif/extension-vtk@1.7.2) (2020-08-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-vtk",
|
||||
"version": "1.7.2",
|
||||
"version": "1.7.7",
|
||||
"description": "OHIF extension for VTK.js",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -35,7 +35,7 @@
|
||||
"cornerstone-core": "^2.2.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dcmjs": "0.16.0",
|
||||
"dcmjs": "0.16.3",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"i18next": "^17.0.3",
|
||||
"i18next-browser-languagedetector": "^3.0.1",
|
||||
@@ -53,8 +53,8 @@
|
||||
"react-vtkjs-viewport": "^0.10.4"
|
||||
},
|
||||
"devDependencies": {
|
||||
"@ohif/core": "^2.10.1",
|
||||
"@ohif/ui": "^1.5.3",
|
||||
"@ohif/core": "^2.10.5",
|
||||
"@ohif/ui": "^1.5.5",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dicom-parser": "^1.8.3",
|
||||
|
||||
@@ -3,6 +3,7 @@ import asyncComponent from './asyncComponent.js';
|
||||
import commandsModule from './commandsModule.js';
|
||||
import toolbarModule from './toolbarModule.js';
|
||||
import withCommandsManager from './withCommandsManager.js';
|
||||
import { version } from '../package.json';
|
||||
// This feels weird
|
||||
// import loadLocales from './loadLocales';
|
||||
|
||||
@@ -15,6 +16,7 @@ const vtkExtension = {
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'vtk',
|
||||
version,
|
||||
|
||||
getViewportModule({ commandsManager, servicesManager }) {
|
||||
const ExtendedVTKViewport = props => (
|
||||
|
||||
@@ -3,6 +3,38 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [2.10.5](https://github.com/OHIF/Viewers/compare/@ohif/core@2.10.4...@ohif/core@2.10.5) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.4](https://github.com/OHIF/Viewers/compare/@ohif/core@2.10.3...@ohif/core@2.10.4) (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.3](https://github.com/OHIF/Viewers/compare/@ohif/core@2.10.2...@ohif/core@2.10.3) (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.2](https://github.com/OHIF/Viewers/compare/@ohif/core@2.10.1...@ohif/core@2.10.2) (2020-09-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [2.10.1](https://github.com/OHIF/Viewers/compare/@ohif/core@2.10.0...@ohif/core@2.10.1) (2020-08-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/core",
|
||||
"version": "2.10.1",
|
||||
"version": "2.10.5",
|
||||
"description": "Generic business logic for web-based medical imaging applications",
|
||||
"author": "OHIF Core Team",
|
||||
"license": "MIT",
|
||||
@@ -39,7 +39,7 @@
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"ajv": "^6.10.0",
|
||||
"dcmjs": "0.16.0",
|
||||
"dcmjs": "0.16.3",
|
||||
"dicomweb-client": "^0.6.0",
|
||||
"immer": "6.0.2",
|
||||
"isomorphic-base64": "^1.0.2",
|
||||
|
||||
@@ -5,6 +5,7 @@ export default class ExtensionManager {
|
||||
constructor({ commandsManager, servicesManager, api, appConfig = {} }) {
|
||||
this.modules = {};
|
||||
this.registeredExtensionIds = [];
|
||||
this.registeredExtensionVesions = {};
|
||||
this.moduleTypeNames = Object.values(MODULE_TYPES);
|
||||
//
|
||||
this._commandsManager = commandsManager;
|
||||
@@ -51,6 +52,7 @@ export default class ExtensionManager {
|
||||
}
|
||||
|
||||
let extensionId = extension.id;
|
||||
const version = extension.version;
|
||||
|
||||
if (!extensionId) {
|
||||
extensionId = Math.random()
|
||||
@@ -98,6 +100,8 @@ export default class ExtensionManager {
|
||||
|
||||
// Track extension registration
|
||||
this.registeredExtensionIds.push(extensionId);
|
||||
|
||||
this.registeredExtensionVesions[extensionId] = version;
|
||||
}
|
||||
|
||||
/**
|
||||
@@ -120,7 +124,8 @@ export default class ExtensionManager {
|
||||
commandsManager: this._commandsManager,
|
||||
appConfig: this._appConfig,
|
||||
configuration,
|
||||
api: this._api
|
||||
api: this._api,
|
||||
extensionManager: this,
|
||||
});
|
||||
|
||||
if (!extensionModule) {
|
||||
|
||||
@@ -184,6 +184,8 @@ describe('ExtensionManager.js', () => {
|
||||
commandsManager,
|
||||
appConfig,
|
||||
configuration: extensionConfiguration,
|
||||
api: undefined,
|
||||
extensionManager,
|
||||
});
|
||||
}
|
||||
});
|
||||
@@ -226,7 +228,7 @@ describe('ExtensionManager.js', () => {
|
||||
return {
|
||||
definitions: {
|
||||
exampleDefinition: {
|
||||
commandFn: () => { },
|
||||
commandFn: () => {},
|
||||
storeContexts: [],
|
||||
options: {},
|
||||
},
|
||||
|
||||
@@ -38,6 +38,7 @@ function _show({
|
||||
onClose = null,
|
||||
closeButton = true,
|
||||
title = null,
|
||||
fullscreen = false,
|
||||
customClassName = null,
|
||||
}) {
|
||||
return serviceImplementation._show({
|
||||
@@ -48,6 +49,7 @@ function _show({
|
||||
onClose,
|
||||
closeButton,
|
||||
title,
|
||||
fullscreen,
|
||||
customClassName,
|
||||
});
|
||||
}
|
||||
|
||||
@@ -11,12 +11,15 @@ import { retrieveStudyMetadata } from './retrieveStudyMetadata';
|
||||
* @param {Array} studyInstanceUIDs The UIDs of the Studies to be retrieved
|
||||
* @param {Object} [filters] - Object containing filters to be applied on retrieve metadata process
|
||||
* @param {string} [filter.seriesInstanceUID] - series instance uid to filter results against
|
||||
* @param {boolean} [separateSeriesInstanceUIDFilters = false] - If true, split filtered metadata calls into multiple calls,
|
||||
* as some DICOMWeb implementations only support single filters.
|
||||
* @returns {Promise} that will be resolved with the metadata or rejected with the error
|
||||
*/
|
||||
export default function retrieveStudiesMetadata(
|
||||
server,
|
||||
studyInstanceUIDs,
|
||||
filters
|
||||
filters,
|
||||
separateSeriesInstanceUIDFilters = false
|
||||
) {
|
||||
// Create an empty array to store the Promises for each metaData retrieval call
|
||||
const promises = [];
|
||||
@@ -24,7 +27,12 @@ export default function retrieveStudiesMetadata(
|
||||
// Loop through the array of studyInstanceUIDs
|
||||
studyInstanceUIDs.forEach(function(StudyInstanceUID) {
|
||||
// Send the call and resolve or reject the related promise based on its outcome
|
||||
const promise = retrieveStudyMetadata(server, StudyInstanceUID, filters);
|
||||
const promise = retrieveStudyMetadata(
|
||||
server,
|
||||
StudyInstanceUID,
|
||||
filters,
|
||||
separateSeriesInstanceUIDFilters
|
||||
);
|
||||
|
||||
// Add the current promise to the array of promises
|
||||
promises.push(promise);
|
||||
|
||||
@@ -11,9 +11,16 @@ const StudyMetaDataPromises = new Map();
|
||||
* @param {string} StudyInstanceUID The UID of the Study to be retrieved
|
||||
* @param {Object} [filters] - Object containing filters to be applied on retrieve metadata process
|
||||
* @param {string} [filter.seriesInstanceUID] - series instance uid to filter results against
|
||||
* @param {boolean} [separateSeriesInstanceUIDFilters = false] - If true, split filtered metadata calls into multiple calls,
|
||||
* as some DICOMWeb implementations only support single filters.
|
||||
* @returns {Promise} that will be resolved with the metadata or rejected with the error
|
||||
*/
|
||||
export function retrieveStudyMetadata(server, StudyInstanceUID, filters) {
|
||||
export function retrieveStudyMetadata(
|
||||
server,
|
||||
StudyInstanceUID,
|
||||
filters,
|
||||
separateSeriesInstanceUIDFilters = false
|
||||
) {
|
||||
// @TODO: Whenever a study metadata request has failed, its related promise will be rejected once and for all
|
||||
// and further requests for that metadata will always fail. On failure, we probably need to remove the
|
||||
// corresponding promise from the "StudyMetaDataPromises" map...
|
||||
@@ -33,11 +40,29 @@ export function retrieveStudyMetadata(server, StudyInstanceUID, filters) {
|
||||
}
|
||||
|
||||
// Create a promise to handle the data retrieval
|
||||
const promise = new Promise((resolve, reject) => {
|
||||
RetrieveMetadata(server, StudyInstanceUID, filters).then(function(data) {
|
||||
resolve(data);
|
||||
}, reject);
|
||||
});
|
||||
let promise;
|
||||
|
||||
if (
|
||||
filters &&
|
||||
filters.seriesInstanceUID &&
|
||||
separateSeriesInstanceUIDFilters
|
||||
) {
|
||||
promise = __separateSeriesRequestToAggregatePromiseateSeriesRequestToAggregatePromise(
|
||||
server,
|
||||
StudyInstanceUID,
|
||||
filters
|
||||
);
|
||||
} else {
|
||||
promise = RetrieveMetadata(server, StudyInstanceUID, filters);
|
||||
|
||||
/*
|
||||
promise = new Promise((resolve, reject) => {
|
||||
RetrieveMetadata(server, StudyInstanceUID, filters).then(function(data) {
|
||||
resolve(data);
|
||||
}, reject);
|
||||
});
|
||||
*/
|
||||
}
|
||||
|
||||
// Store the promise in cache
|
||||
StudyMetaDataPromises.set(StudyInstanceUID, promise);
|
||||
@@ -45,6 +70,49 @@ export function retrieveStudyMetadata(server, StudyInstanceUID, filters) {
|
||||
return promise;
|
||||
}
|
||||
|
||||
/**
|
||||
* Splits up seriesInstanceUID filters to multiple calls for platforms
|
||||
* @param {Object} server Object with server configuration parameters
|
||||
* @param {string} StudyInstanceUID The UID of the Study to be retrieved
|
||||
* @param {Object} filters - Object containing filters to be applied on retrieve metadata process
|
||||
*/
|
||||
function __separateSeriesRequestToAggregatePromiseateSeriesRequestToAggregatePromise(
|
||||
server,
|
||||
StudyInstanceUID,
|
||||
filters
|
||||
) {
|
||||
const { seriesInstanceUID } = filters;
|
||||
const seriesInstanceUIDs = seriesInstanceUID.split(',');
|
||||
|
||||
return new Promise((resolve, reject) => {
|
||||
const promises = [];
|
||||
|
||||
seriesInstanceUIDs.forEach(uid => {
|
||||
const seriesSpecificFilters = Object.assign({}, filters, {
|
||||
seriesInstanceUID: uid,
|
||||
});
|
||||
|
||||
promises.push(
|
||||
RetrieveMetadata(server, StudyInstanceUID, seriesSpecificFilters)
|
||||
);
|
||||
});
|
||||
|
||||
Promise.all(promises).then(results => {
|
||||
const data = results[0];
|
||||
|
||||
let series = [];
|
||||
|
||||
results.forEach(result => {
|
||||
series = [...series, ...result.series];
|
||||
});
|
||||
|
||||
data.series = series;
|
||||
|
||||
resolve(data);
|
||||
}, reject);
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Delete the cached study metadata retrieval promise to ensure that the browser will
|
||||
* re-retrieve the study metadata when it is next requested
|
||||
|
||||
@@ -3,6 +3,22 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.5.5](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.5.4...@ohif/ui@1.5.5) (2020-09-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/ui
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.5.4](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.5.3...@ohif/ui@1.5.4) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/ui
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.5.3](https://github.com/OHIF/Viewers/compare/@ohif/ui@1.5.2...@ohif/ui@1.5.3) (2020-07-23)
|
||||
|
||||
**Note:** Version bump only for package @ohif/ui
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/ui",
|
||||
"version": "1.5.3",
|
||||
"version": "1.5.5",
|
||||
"description": "A set of React components for Medical Imaging Viewers",
|
||||
"author": "OHIF Contributors",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -22,6 +22,7 @@ const OHIFModal = ({
|
||||
closeButton,
|
||||
shouldCloseOnEsc,
|
||||
isOpen,
|
||||
fullscreen,
|
||||
title,
|
||||
onClose,
|
||||
children,
|
||||
@@ -41,9 +42,13 @@ const OHIFModal = ({
|
||||
);
|
||||
};
|
||||
|
||||
const classes = fullscreen
|
||||
? classNames('OHIFModal', className, 'OHIFModal-fullscreen')
|
||||
: classNames('OHIFModal', className);
|
||||
|
||||
return (
|
||||
<Modal
|
||||
className={classNames('OHIFModal', className)}
|
||||
className={classes}
|
||||
data-cy="modal"
|
||||
shouldCloseOnEsc={shouldCloseOnEsc}
|
||||
isOpen={isOpen}
|
||||
|
||||
@@ -18,9 +18,17 @@
|
||||
@media (min-width: 768px)
|
||||
width: 600px
|
||||
|
||||
&.OHIFModal-fullscreen
|
||||
width: 95%
|
||||
|
||||
@media (min-width: 992px)
|
||||
width: 900px
|
||||
|
||||
&.OHIFModal-fullscreen
|
||||
width: 95%
|
||||
|
||||
|
||||
|
||||
&__content
|
||||
padding: 20px
|
||||
max-height: 90vh;
|
||||
|
||||
@@ -36,6 +36,7 @@ const ModalProvider = ({ children, modal: Modal, service }) => {
|
||||
closeButton: true,
|
||||
title: null,
|
||||
customClassName: '',
|
||||
fullscreen: false,
|
||||
};
|
||||
|
||||
const [options, setOptions] = useState(DEFAULT_OPTIONS);
|
||||
@@ -78,6 +79,7 @@ const ModalProvider = ({ children, modal: Modal, service }) => {
|
||||
title,
|
||||
customClassName,
|
||||
shouldCloseOnEsc,
|
||||
fullscreen,
|
||||
closeButton,
|
||||
} = options;
|
||||
|
||||
@@ -89,6 +91,7 @@ const ModalProvider = ({ children, modal: Modal, service }) => {
|
||||
shouldCloseOnEsc={shouldCloseOnEsc}
|
||||
isOpen={isOpen}
|
||||
title={title}
|
||||
fullscreen={fullscreen}
|
||||
closeButton={closeButton}
|
||||
onClose={() => {
|
||||
if (onClose) {
|
||||
|
||||
@@ -87,6 +87,7 @@ import user from './icons/user.svg';
|
||||
import youtube from './icons/youtube.svg';
|
||||
import eye from './icons/eye.svg';
|
||||
import eyeClosed from './icons/eye-closed.svg';
|
||||
import envelopeSquare from './icons/envelope-square.svg';
|
||||
|
||||
const ICONS = {
|
||||
eye,
|
||||
@@ -176,6 +177,7 @@ const ICONS = {
|
||||
lung,
|
||||
liver,
|
||||
save: saveRegular,
|
||||
'envelope-square': envelopeSquare,
|
||||
};
|
||||
|
||||
/**
|
||||
|
||||
@@ -0,0 +1,10 @@
|
||||
<svg xmlns="http://www.w3.org/2000/svg"
|
||||
xmlns="http://www.w3.org/2000/svg"
|
||||
viewBox="0 0 448 512"
|
||||
aria-labelledby="envelope-square"
|
||||
width="1em"
|
||||
height="1em"
|
||||
fill="currentColor"
|
||||
>
|
||||
<path d="M400 32H48C21.49 32 0 53.49 0 80v352c0 26.51 21.49 48 48 48h352c26.51 0 48-21.49 48-48V80c0-26.51-21.49-48-48-48zM178.117 262.104C87.429 196.287 88.353 196.121 64 177.167V152c0-13.255 10.745-24 24-24h272c13.255 0 24 10.745 24 24v25.167c-24.371 18.969-23.434 19.124-114.117 84.938-10.5 7.655-31.392 26.12-45.883 25.894-14.503.218-35.367-18.227-45.883-25.895zM384 217.775V360c0 13.255-10.745 24-24 24H88c-13.255 0-24-10.745-24-24V217.775c13.958 10.794 33.329 25.236 95.303 70.214 14.162 10.341 37.975 32.145 64.694 32.01 26.887.134 51.037-22.041 64.72-32.025 61.958-44.965 81.325-59.406 95.283-70.199z"/>
|
||||
</svg>
|
||||
|
After Width: | Height: | Size: 811 B |
@@ -9,7 +9,7 @@ services:
|
||||
max-size: '10m'
|
||||
ports:
|
||||
- '389:389'
|
||||
env_file: ./dcm4che/docker-compose-dcm4che.env
|
||||
env_file: ./docker-compose-dcm4che.env
|
||||
volumes:
|
||||
- ./dcm4che/etc/localtime:/etc/localtime:ro
|
||||
- ./dcm4che/etc/timezone:/etc/timezone:ro
|
||||
@@ -25,7 +25,7 @@ services:
|
||||
max-size: '10m'
|
||||
ports:
|
||||
- '5432:5432'
|
||||
env_file: ./dcm4che/docker-compose-dcm4che.env
|
||||
env_file: ./docker-compose-dcm4che.env
|
||||
volumes:
|
||||
- ./dcm4che/etc/localtime:/etc/localtime:ro
|
||||
- ./dcm4che/etc/timezone:/etc/timezone:ro
|
||||
@@ -44,7 +44,7 @@ services:
|
||||
- '9990:9990'
|
||||
- '11112:11112'
|
||||
- '2575:2575'
|
||||
env_file: ./dcm4che/docker-compose-dcm4che.env
|
||||
env_file: ./docker-compose-dcm4che.env
|
||||
environment:
|
||||
WILDFLY_CHOWN: /opt/wildfly/standalone /storage
|
||||
WILDFLY_WAIT_FOR: ldap:389 db:5432
|
||||
@@ -73,5 +73,4 @@ services:
|
||||
restart: always
|
||||
networks:
|
||||
- dcm4che_default
|
||||
|
||||
networks: dcm4che_default:
|
||||
networks: dcm4che_default:
|
||||
@@ -3,6 +3,62 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [4.5.10](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.5.9...@ohif/viewer@4.5.10) (2020-09-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.5.9](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.5.8...@ohif/viewer@4.5.9) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.5.8](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.5.7...@ohif/viewer@4.5.8) (2020-09-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.5.7](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.5.6...@ohif/viewer@4.5.7) (2020-09-09)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.5.6](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.5.5...@ohif/viewer@4.5.6) (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.5.5](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.5.4...@ohif/viewer@4.5.5) (2020-09-03)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.5.4](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.5.3...@ohif/viewer@4.5.4) (2020-09-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [4.5.3](https://github.com/OHIF/Viewers/compare/@ohif/viewer@4.5.2...@ohif/viewer@4.5.3) (2020-08-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/viewer
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/viewer",
|
||||
"version": "4.5.3",
|
||||
"version": "4.5.10",
|
||||
"description": "OHIF Viewer",
|
||||
"author": "OHIF Contributors",
|
||||
"license": "MIT",
|
||||
@@ -48,18 +48,18 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"@ohif/core": "^2.10.1",
|
||||
"@ohif/extension-cornerstone": "^2.9.2",
|
||||
"@ohif/extension-dicom-html": "^1.2.5",
|
||||
"@ohif/extension-dicom-microscopy": "^0.51.1",
|
||||
"@ohif/extension-dicom-p10-downloader": "^0.1.2",
|
||||
"@ohif/extension-dicom-pdf": "^1.0.4",
|
||||
"@ohif/extension-dicom-rt": "^0.4.1",
|
||||
"@ohif/extension-dicom-segmentation": "^0.4.1",
|
||||
"@ohif/extension-lesion-tracker": "^0.2.0",
|
||||
"@ohif/extension-vtk": "^1.7.2",
|
||||
"@ohif/core": "^2.10.5",
|
||||
"@ohif/extension-cornerstone": "^2.9.4",
|
||||
"@ohif/extension-debugging": "^0.1.5",
|
||||
"@ohif/extension-dicom-html": "^1.2.8",
|
||||
"@ohif/extension-dicom-microscopy": "^0.51.3",
|
||||
"@ohif/extension-dicom-pdf": "^1.0.6",
|
||||
"@ohif/extension-dicom-rt": "^0.4.5",
|
||||
"@ohif/extension-dicom-segmentation": "^0.4.5",
|
||||
"@ohif/extension-lesion-tracker": "^0.2.1",
|
||||
"@ohif/extension-vtk": "^1.7.7",
|
||||
"@ohif/i18n": "^0.52.8",
|
||||
"@ohif/ui": "^1.5.3",
|
||||
"@ohif/ui": "^1.5.5",
|
||||
"@tanem/react-nprogress": "^1.1.25",
|
||||
"classnames": "^2.2.6",
|
||||
"core-js": "^3.2.1",
|
||||
@@ -67,7 +67,7 @@
|
||||
"cornerstone-math": "^0.1.8",
|
||||
"cornerstone-tools": "^4.20.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.0",
|
||||
"dcmjs": "0.16.0",
|
||||
"dcmjs": "0.16.3",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"dicomweb-client": "^0.4.4",
|
||||
"hammerjs": "^2.0.8",
|
||||
|
||||
@@ -5,11 +5,14 @@ window.config = function(props) {
|
||||
disableMeasurementPanel: true,
|
||||
routerBasename: '/',
|
||||
enableGoogleCloudAdapter: true,
|
||||
splitQueryParameterCalls: true, // Allows the user to split QIDO SeriesInstanceUID filters into multiple calls, if the server does not support multi-valued query parameters.
|
||||
enableGoogleCloudAdapterUI: false,
|
||||
showStudyList: true,
|
||||
filterQueryParam: true,
|
||||
httpErrorHandler: error => {
|
||||
// This is 429 when rejected from the public idc sandbox too often.
|
||||
console.warn(error.status);
|
||||
|
||||
// Could use services manager here to bring up a dialog/modal if needed.
|
||||
console.warn('test, navigate to https://ohif.org/');
|
||||
window.location = 'https://ohif.org/';
|
||||
|
||||
@@ -2,6 +2,9 @@ import commandsModule from './commandsModule.js';
|
||||
|
||||
export default {
|
||||
id: 'generic-viewer-commands',
|
||||
get version() {
|
||||
return window.version;
|
||||
},
|
||||
getCommandsModule({ commandsManager }) {
|
||||
return commandsModule({ commandsManager });
|
||||
},
|
||||
|
||||
@@ -9,6 +9,9 @@ export default {
|
||||
* Only required property. Should be a unique value across all extensions.
|
||||
*/
|
||||
id: 'measurements-table',
|
||||
get version() {
|
||||
return window.version;
|
||||
},
|
||||
|
||||
preRegistration({ servicesManager, commandsManager, configuration = {} }) {
|
||||
init({ servicesManager, commandsManager, configuration });
|
||||
|
||||
@@ -78,8 +78,6 @@ class ViewerLocalFileData extends Component {
|
||||
study.displaySets ||
|
||||
studyMetadata.createDisplaySets(sopClassHandlerModules);
|
||||
|
||||
debugger;
|
||||
|
||||
studyMetadata.forEachDisplaySet(displayset => {
|
||||
displayset.localFile = true;
|
||||
});
|
||||
|
||||
@@ -88,6 +88,7 @@ const _isQueryParamApplied = (study, filters = {}, isFilterStrategy) => {
|
||||
const { seriesInstanceUID } = filters;
|
||||
let applied = true;
|
||||
// skip in case no filter or no toast manager
|
||||
|
||||
if (!seriesInstanceUID) {
|
||||
return applied;
|
||||
}
|
||||
@@ -340,6 +341,13 @@ function ViewerRetrieveStudyData({
|
||||
}
|
||||
}
|
||||
|
||||
if (
|
||||
appConfig.splitQueryParameterCalls ||
|
||||
appConfig.enableGoogleCloudAdapter
|
||||
) {
|
||||
retrieveParams.push(true); // Seperate SeriesInstanceUID filter calls.
|
||||
}
|
||||
|
||||
cancelableStudiesPromises[studyInstanceUIDs] = makeCancelable(
|
||||
retrieveStudiesMetadata(...retrieveParams)
|
||||
)
|
||||
|
||||
@@ -29,7 +29,10 @@ import OHIFDicomSegmentationExtension from '@ohif/extension-dicom-segmentation';
|
||||
import OHIFDicomRtExtension from '@ohif/extension-dicom-rt';
|
||||
import OHIFDicomMicroscopyExtension from '@ohif/extension-dicom-microscopy';
|
||||
import OHIFDicomPDFExtension from '@ohif/extension-dicom-pdf';
|
||||
import OHIFDicomP10DownloaderExtension from '@ohif/extension-dicom-p10-downloader';
|
||||
import OHIFDicomTagBrowserExtension from '@ohif/extension-dicom-tag-browser';
|
||||
// Add this for Debugging purposes:
|
||||
//import OHIFDebuggingExtension from '@ohif/extension-debugging';
|
||||
import { version } from '../package.json';
|
||||
|
||||
/*
|
||||
* Default Settings
|
||||
@@ -38,6 +41,8 @@ let config = {};
|
||||
|
||||
if (window) {
|
||||
config = window.config || {};
|
||||
|
||||
window.version = version;
|
||||
}
|
||||
|
||||
const appProps = {
|
||||
@@ -49,7 +54,8 @@ const appProps = {
|
||||
OHIFDicomPDFExtension,
|
||||
OHIFDicomSegmentationExtension,
|
||||
OHIFDicomRtExtension,
|
||||
OHIFDicomP10DownloaderExtension,
|
||||
//[OHIFDebuggingExtension, { mailTo: 'support@canceridc.dev' }],
|
||||
//OHIFDicomTagBrowserExtension,
|
||||
],
|
||||
};
|
||||
|
||||
|
||||
@@ -6539,10 +6539,10 @@ dateformat@^3.0.0:
|
||||
resolved "https://registry.yarnpkg.com/dateformat/-/dateformat-3.0.3.tgz#a6e37499a4d9a9cf85ef5872044d62901c9889ae"
|
||||
integrity sha512-jyCETtSl3VMZMWeRo7iY1FL19ges1t55hMo5yaam4Jrsm5EPL89UQkoQRyiI+Yf4k8r2ZpdngkV8hr1lIdjb3Q==
|
||||
|
||||
dcmjs@0.16.0:
|
||||
version "0.16.0"
|
||||
resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.16.0.tgz#714755d006c3a49cf65ef13e627ff7a23151d35a"
|
||||
integrity sha512-41nY3Isg5i5FoSd1s67aUgUHi146r+fb8JuiRvDsxvm7MEkkdjIzMYMtxjsrVwKRW1xRH+x34nxbV9+8cc7WQw==
|
||||
dcmjs@0.16.3:
|
||||
version "0.16.3"
|
||||
resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.16.3.tgz#ef44ccc4988a473fd40e1601122c57f2babded11"
|
||||
integrity sha512-pMQGifMpMW9i9ufCdUoEPHrLWnm6ilnpfLqUc+PPoWr7OnuBhiRVRunbv39oTtFDZOLhQ2Ampm7UrkidWAbqiA==
|
||||
dependencies:
|
||||
"@babel/polyfill" "^7.8.3"
|
||||
"@babel/runtime" "^7.8.4"
|
||||
@@ -6782,6 +6782,11 @@ detab@2.0.2, detab@^2.0.0:
|
||||
dependencies:
|
||||
repeat-string "^1.5.4"
|
||||
|
||||
detect-browser@5.1.1:
|
||||
version "5.1.1"
|
||||
resolved "https://registry.yarnpkg.com/detect-browser/-/detect-browser-5.1.1.tgz#a800db91d3fd60d0861669f5984f1be9ffbe009c"
|
||||
integrity sha512-5n2aWI57qC3kZaK4j2zYsG6L1LrxgLptGCNhMQgdKhVn6cSdcq43pp6xHPfTHG3TYM6myF4tIPWiZtfdVDgb9w==
|
||||
|
||||
detect-file@^1.0.0:
|
||||
version "1.0.0"
|
||||
resolved "https://registry.yarnpkg.com/detect-file/-/detect-file-1.0.0.tgz#f0d66d03672a825cb1b73bdb3fe62310c8e552b7"
|
||||
|
||||
Reference in new issue
Block a user