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No files matched your search
@@ -62,7 +62,7 @@ echo "Done generating documentation output"
|
||||
echo 'STARTING PUBLISH'
|
||||
|
||||
# WILL ALWAYS FAIL IF INITIATED FROM PR BRANCH
|
||||
./node_modules/.bin/gh-pages \
|
||||
npx gh-pages \
|
||||
--silent \
|
||||
--repo https://$GITHUB_TOKEN@github.com/OHIF/Viewers.git \
|
||||
--message 'Autogenerated Message: [ci skip]' \
|
||||
|
||||
+225
-180
@@ -13,53 +13,54 @@ version: 2.1
|
||||
##
|
||||
orbs:
|
||||
codecov: codecov/codecov@1.0.5
|
||||
cypress: cypress-io/cypress@1.10.0
|
||||
cypress: cypress-io/cypress@1.11.0
|
||||
executors:
|
||||
# Custom executor to override Cypress config
|
||||
deploy-to-prod-executor:
|
||||
docker:
|
||||
- image: 'cypress/browsers:node10.16.0-chrome77'
|
||||
environment:
|
||||
CYPRESS_BASE_URL: https://ohif-staging.netlify.com/
|
||||
|
||||
defaults: &defaults
|
||||
docker:
|
||||
- image: circleci/node:12.9.1
|
||||
environment:
|
||||
TERM: xterm # Enable colors in term
|
||||
QUICK_BUILD: true
|
||||
working_directory: ~/repo
|
||||
|
||||
jobs:
|
||||
###
|
||||
# Workflow: PR_CHECKS
|
||||
###
|
||||
UNIT_TESTS:
|
||||
<<: *defaults
|
||||
steps:
|
||||
# Update yarn
|
||||
- run: yarn -v
|
||||
#- run: rm -rf ~/.yarn && npm i -g yarn && yarn -v
|
||||
|
||||
# Enable yarn workspaces
|
||||
- run: yarn config set workspaces-experimental true
|
||||
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout:
|
||||
post:
|
||||
- git fetch --all
|
||||
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache ## Cache yarn and Cypress
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
|
||||
# RUN TESTS
|
||||
- run:
|
||||
name: 'JavaScript Test Suite'
|
||||
command: yarn run test:unit:ci
|
||||
|
||||
# PLATFORM/VIEWER
|
||||
- run:
|
||||
name: 'VIEWER: Combine report output'
|
||||
@@ -73,7 +74,6 @@ jobs:
|
||||
- codecov/upload:
|
||||
file: '/home/circleci/repo/platform/viewer/coverage/reports'
|
||||
flags: 'viewer'
|
||||
|
||||
# PLATFORM/CORE
|
||||
- run:
|
||||
name: 'CORE: Combine report output'
|
||||
@@ -88,12 +88,12 @@ jobs:
|
||||
file: '/home/circleci/repo/platform/core/coverage/reports'
|
||||
flags: 'core'
|
||||
|
||||
UNIT_TESTS_PERSIST_WORKSPACE:
|
||||
###
|
||||
# Workflow: PR_OPTIONAL_DOCKER_PUBLISH
|
||||
###
|
||||
DOCKER_PR_PUBLISH:
|
||||
<<: *defaults
|
||||
steps:
|
||||
# Update yarn
|
||||
#- run: rm -rf ~/.yarn && npm i -g yarn && yarn -v
|
||||
|
||||
# Enable yarn workspaces
|
||||
- run: yarn config set workspaces-experimental true
|
||||
|
||||
@@ -113,70 +113,152 @@ jobs:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
|
||||
- run:
|
||||
name: Build and push Docker image
|
||||
command: |
|
||||
# Remove npm config
|
||||
rm -f ./.npmrc
|
||||
# Set our version number using vars
|
||||
echo $CIRCLE_BUILD_NUM
|
||||
# Build our image, auth, and push
|
||||
docker build --tag ohif/viewer:PR_BUILD-$CIRCLE_BUILD_NUM .
|
||||
echo $DOCKER_PWD | docker login -u $DOCKER_LOGIN --password-stdin
|
||||
docker push ohif/viewer:PR_BUILD-$CIRCLE_BUILD_NUM
|
||||
|
||||
###
|
||||
# Workflow: DEPLOY
|
||||
###
|
||||
BUILD:
|
||||
<<: *defaults
|
||||
steps:
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout:
|
||||
post:
|
||||
- git fetch --all
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
# when lock file changes, use increasingly general patterns to restore cache
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache ## Cache yarn and Cypress
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
|
||||
# RUN TESTS
|
||||
# Build & Test
|
||||
- run:
|
||||
name: 'JavaScript Test Suite'
|
||||
command: yarn run test:unit:ci
|
||||
|
||||
# PLATFORM/VIEWER
|
||||
- run:
|
||||
name: 'VIEWER: Combine report output'
|
||||
command: |
|
||||
viewerCov="/home/circleci/repo/platform/viewer/coverage"
|
||||
touch "${viewerCov}/reports"
|
||||
cat "${viewerCov}/clover.xml" >> "${viewerCov}/reports"
|
||||
echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
|
||||
cat "${viewerCov}/lcov.info" >>"${viewerCov}/reports"
|
||||
echo "\<<\<<\<< EOF" >> "${viewerCov}/reports"
|
||||
- codecov/upload:
|
||||
file: '/home/circleci/repo/platform/viewer/coverage/reports'
|
||||
flags: 'viewer'
|
||||
|
||||
# PLATFORM/CORE
|
||||
- run:
|
||||
name: 'CORE: Combine report output'
|
||||
command: |
|
||||
coreCov="/home/circleci/repo/platform/core/coverage"
|
||||
touch "${coreCov}/reports"
|
||||
cat "${coreCov}/clover.xml" >> "${coreCov}/reports"
|
||||
echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
|
||||
cat "${coreCov}/lcov.info" >> "${coreCov}/reports"
|
||||
echo "\<<\<<\<< EOF" >> "${coreCov}/reports"
|
||||
- codecov/upload:
|
||||
file: '/home/circleci/repo/platform/core/coverage/reports'
|
||||
flags: 'core'
|
||||
|
||||
name: 'Build the OHIF Viewer'
|
||||
command: yarn run build
|
||||
no_output_timeout: 45m
|
||||
# - run:
|
||||
# name: 'Upload SourceMaps, Send Deploy Notification'
|
||||
# command: |
|
||||
# # export FILE_1=$(find ./build/static/js -type f -name "2.*.js" -exec basename {} \;)
|
||||
# # export FILE_MAIN=$(find ./build/static/js -type f -name "main.*.js" -exec basename {} \;)
|
||||
# # export FILE_RUNTIME_MAIN=$(find ./build/static/js -type f -name "runtime~main.*.js" -exec basename {} \;)
|
||||
# # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_1.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_1
|
||||
# # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_MAIN
|
||||
# # curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_RUNTIME_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_RUNTIME_MAIN
|
||||
# curl --request POST https://api.rollbar.com/api/1/deploy/ -F access_token=$ROLLBAR_TOKEN -F environment=$GOOGLE_STORAGE_BUCKET -F revision=$CIRCLE_SHA1 -F local_username=CircleCI
|
||||
# Persist :+1:
|
||||
- persist_to_workspace: &persist_to_workspace
|
||||
- persist_to_workspace:
|
||||
root: ~/repo
|
||||
paths: .
|
||||
paths:
|
||||
- platform/viewer/dist
|
||||
- netlify.toml
|
||||
- .netlify
|
||||
|
||||
NPM_PUBLISH:
|
||||
<<: *defaults
|
||||
DEPLOY_TO_DEV:
|
||||
docker:
|
||||
- image: circleci/node:12.9.1
|
||||
environment:
|
||||
TERM: xterm
|
||||
NETLIFY_SITE_ID: 32708787-c9b0-4634-b50f-7ca41952da77
|
||||
working_directory: ~/repo
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- run: cd .netlify && npm install
|
||||
- run:
|
||||
cp .netlify/deploy-workflow/_redirects platform/viewer/dist/_redirects
|
||||
- run: cd .netlify && npm run deploy
|
||||
|
||||
DEPLOY_TO_STAGING:
|
||||
docker:
|
||||
- image: circleci/node:12.9.1
|
||||
environment:
|
||||
TERM: xterm
|
||||
NETLIFY_SITE_ID: c7502ae3-b150-493c-8422-05701e44a969
|
||||
working_directory: ~/repo
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- run: cd .netlify && npm install
|
||||
- run:
|
||||
cp .netlify/deploy-workflow/_redirects platform/viewer/dist/_redirects
|
||||
- run: cd .netlify && npm run deploy
|
||||
|
||||
DEPLOY_TO_PRODUCTION:
|
||||
docker:
|
||||
- image: circleci/node:12.9.1
|
||||
environment:
|
||||
TERM: xterm
|
||||
NETLIFY_SITE_ID: 79c4a5da-5c95-4dc9-84f7-45fd9dfe21b0
|
||||
working_directory: ~/repo
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- run: cd .netlify && npm install
|
||||
- run:
|
||||
cp .netlify/deploy-workflow/_redirects platform/viewer/dist/_redirects
|
||||
- run: cd .netlify && npm run deploy
|
||||
|
||||
###
|
||||
# Workflow: RELEASE
|
||||
###
|
||||
NPM_PUBLISH:
|
||||
<<: *defaults
|
||||
steps:
|
||||
- run: yarn -v
|
||||
# Checkout code and ALL Git Tags
|
||||
- checkout:
|
||||
post:
|
||||
- git fetch --all
|
||||
# Use increasingly general patterns to restore cache
|
||||
- restore_cache:
|
||||
name: Restore Yarn and Cypress Package Cache
|
||||
keys:
|
||||
- yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- yarn-packages-
|
||||
- run:
|
||||
name: Install Dependencies
|
||||
command: yarn install --frozen-lockfile
|
||||
- save_cache:
|
||||
name: Save Yarn Package Cache
|
||||
paths:
|
||||
- ~/.cache/yarn
|
||||
key: yarn-packages-{{ checksum "yarn.lock" }}
|
||||
- run:
|
||||
name: Avoid hosts unknown for github
|
||||
command:
|
||||
mkdir ~/.ssh/ && echo -e "Host github.com\n\tStrictHostKeyChecking
|
||||
no\n" > ~/.ssh/config
|
||||
- run: git config --global user.email "danny.ri.brown+ohif-bot@gmail.com"
|
||||
- run: git config --global user.name "ohif-bot"
|
||||
command: |
|
||||
rm -rf ~/.ssh
|
||||
mkdir ~/.ssh/
|
||||
echo -e "Host github.com\n\tStrictHostKeyChecking no\n" > ~/.ssh/config
|
||||
git config --global user.email "danny.ri.brown+ohif-bot@gmail.com"
|
||||
git config --global user.name "ohif-bot"
|
||||
- run:
|
||||
name: Authenticate with registry
|
||||
name: Authenticate with NPM registry
|
||||
command:
|
||||
echo "//registry.npmjs.org/:_authToken=$NPM_TOKEN" > ~/repo/.npmrc
|
||||
- run: npx lerna version
|
||||
- run: npx lerna publish from-package
|
||||
|
||||
# Persist :+1:
|
||||
- persist_to_workspace:
|
||||
root: ~/repo
|
||||
paths: .
|
||||
@@ -184,21 +266,20 @@ jobs:
|
||||
DOCS_PUBLISH:
|
||||
<<: *defaults
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- checkout
|
||||
- run:
|
||||
name: Avoid hosts unknown for github
|
||||
command:
|
||||
mkdir ~/.ssh/ && echo -e "Host github.com\n\tStrictHostKeyChecking
|
||||
no\n" > ~/.ssh/config
|
||||
- run: git config --global user.email "danny.ri.brown+ohif-bot@gmail.com"
|
||||
- run: git config --global user.name "ohif-bot"
|
||||
- run: yarn global add gitbook-cli
|
||||
- run: yarn global add gh-pages
|
||||
command: |
|
||||
rm -rf ~/.ssh
|
||||
mkdir ~/.ssh/
|
||||
echo -e "Host github.com\n\tStrictHostKeyChecking no\n" > ~/.ssh/config
|
||||
git config --global user.email "danny.ri.brown+ohif-bot@gmail.com"
|
||||
git config --global user.name "ohif-bot"
|
||||
- run: yarn global add gitbook-cli gh-pages
|
||||
- run: chmod +x ~/repo/.circleci/build-and-publish-docs.sh
|
||||
- run: ~/repo/.circleci/build-and-publish-docs.sh
|
||||
|
||||
DOCKER_PUBLISH:
|
||||
DOCKER_MASTER_PUBLISH:
|
||||
<<: *defaults
|
||||
steps:
|
||||
- attach_workspace:
|
||||
@@ -209,7 +290,8 @@ jobs:
|
||||
name: Build and push Docker image
|
||||
command: |
|
||||
# This file will exist if a new version was published by
|
||||
# our `semantic-release` command in the previous job
|
||||
# our command in the previous job. Created in npm postpublish hook
|
||||
# in the `platform/viewer` project.
|
||||
if [[ ! -e platform/viewer/success_version.txt ]]; then
|
||||
exit 0
|
||||
else
|
||||
@@ -227,55 +309,9 @@ jobs:
|
||||
docker push ohif/$IMAGE_NAME:latest
|
||||
fi
|
||||
|
||||
VIEWER_DEMO_BUILD:
|
||||
<<: *defaults
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
# Build & Test
|
||||
- run:
|
||||
name: 'Build Demo Site'
|
||||
command: yarn run build:demo
|
||||
no_output_timeout: 45m
|
||||
- run:
|
||||
name: 'Upload SourceMaps, Send Deploy Notification'
|
||||
command: |
|
||||
# export FILE_1=$(find ./build/static/js -type f -name "2.*.js" -exec basename {} \;)
|
||||
# export FILE_MAIN=$(find ./build/static/js -type f -name "main.*.js" -exec basename {} \;)
|
||||
# export FILE_RUNTIME_MAIN=$(find ./build/static/js -type f -name "runtime~main.*.js" -exec basename {} \;)
|
||||
# curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_1.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_1
|
||||
# curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_MAIN
|
||||
# curl https://api.rollbar.com/api/1/sourcemap -F source_map=@build/static/js/$FILE_RUNTIME_MAIN.map -F access_token=$ROLLBAR_TOKEN -F version=$CIRCLE_SHA1 -F minified_url=https://$GOOGLE_STORAGE_BUCKET/static/js/$FILE_RUNTIME_MAIN
|
||||
curl --request POST https://api.rollbar.com/api/1/deploy/ -F access_token=$ROLLBAR_TOKEN -F environment=$GOOGLE_STORAGE_BUCKET -F revision=$CIRCLE_SHA1 -F local_username=CircleCI
|
||||
# Persist :+1:
|
||||
- persist_to_workspace:
|
||||
root: ~/repo
|
||||
paths: .
|
||||
|
||||
VIEWER_DEMO_PUBLISH:
|
||||
working_directory: ~/repo
|
||||
docker:
|
||||
- image: google/cloud-sdk
|
||||
steps:
|
||||
- attach_workspace:
|
||||
at: ~/repo
|
||||
- setup_remote_docker:
|
||||
docker_layer_caching: false
|
||||
- run:
|
||||
name: Deploy latest version to viewer.ohif.org
|
||||
command: |
|
||||
# https://circleci.com/docs/2.0/google-auth/#authorization
|
||||
echo $GCLOUD_SERVICE_KEY | gcloud auth activate-service-account --key-file=-
|
||||
gcloud --quiet config set project ${GOOGLE_PROJECT_ID}
|
||||
gcloud --quiet config set compute/zone ${GOOGLE_COMPUTE_ZONE}
|
||||
# Remove all files in Storage Bucket; Push latest
|
||||
gsutil -m rm gs://$GOOGLE_STORAGE_BUCKET/**
|
||||
gsutil -m rsync -R platform/viewer/dist gs://$GOOGLE_STORAGE_BUCKET
|
||||
|
||||
workflows:
|
||||
version: 2
|
||||
|
||||
# PULL REQUESTS
|
||||
PR_CHECKS:
|
||||
jobs:
|
||||
- UNIT_TESTS:
|
||||
@@ -288,10 +324,13 @@ workflows:
|
||||
# E2E: PWA
|
||||
- cypress/run:
|
||||
name: 'E2E: PWA'
|
||||
executor: cypress/browsers-chrome76
|
||||
browser: chrome
|
||||
pre-steps:
|
||||
- run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
|
||||
add wait-on' # Use yarn latest
|
||||
yarn: true
|
||||
record: false
|
||||
store_artifacts: false
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true yarn run build
|
||||
@@ -307,14 +346,18 @@ workflows:
|
||||
# E2E: script-tag
|
||||
- cypress/run:
|
||||
name: 'E2E: Script Tag'
|
||||
executor: cypress/browsers-chrome76
|
||||
browser: chrome
|
||||
pre-steps:
|
||||
- run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
|
||||
add wait-on' # Use yarn latest
|
||||
yarn: true
|
||||
record: false
|
||||
store_artifacts: false
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true yarn run build:package
|
||||
start: yarn run test:e2e:serve
|
||||
spec: 'cypress/integration/common/**/*'
|
||||
wait-on: 'http://localhost:3000'
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
no-workspace: true # Don't persist workspace
|
||||
@@ -324,75 +367,77 @@ workflows:
|
||||
requires:
|
||||
- UNIT_TESTS
|
||||
|
||||
# MERGE TO MASTER
|
||||
RELEASE:
|
||||
PR_OPTIONAL_DOCKER_PUBLISH:
|
||||
jobs:
|
||||
- UNIT_TESTS_PERSIST_WORKSPACE:
|
||||
# https://circleci.com/docs/2.0/workflows/#holding-a-workflow-for-a-manual-approval
|
||||
- AWAIT_APPROVAL:
|
||||
type: approval
|
||||
# Update hub.docker.org
|
||||
- DOCKER_PR_PUBLISH:
|
||||
context: Docker Hub
|
||||
requires:
|
||||
- AWAIT_APPROVAL
|
||||
|
||||
###
|
||||
# Our workflow for building, deploying, and promoting builds across our
|
||||
# development, staging, and production environments.
|
||||
###
|
||||
DEPLOY:
|
||||
jobs:
|
||||
- BUILD:
|
||||
filters:
|
||||
branches:
|
||||
only: master
|
||||
# E2E: PWA + Persist
|
||||
- cypress/run:
|
||||
name: 'E2E: PWA'
|
||||
pre-steps:
|
||||
- run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
|
||||
add wait-on' # Use yarn latest
|
||||
yarn: true
|
||||
record: true
|
||||
store_artifacts: true
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true yarn run build
|
||||
start: yarn run test:e2e:serve
|
||||
wait-on: 'http://localhost:3000'
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
no-workspace: true # Don't persist workspace
|
||||
post-steps:
|
||||
- store_artifacts:
|
||||
path: platform/viewer/cypress/screenshots
|
||||
- store_test_results:
|
||||
path: cypress/results
|
||||
- DEPLOY_TO_DEV:
|
||||
requires:
|
||||
- UNIT_TESTS_PERSIST_WORKSPACE
|
||||
# E2E: script-tag
|
||||
- cypress/run:
|
||||
name: 'E2E: Script Tag'
|
||||
pre-steps:
|
||||
- run: 'rm -rf ~/.yarn && npm i -g yarn && yarn -v && yarn global
|
||||
add wait-on' # Use yarn latest
|
||||
yarn: true
|
||||
store_artifacts: false
|
||||
working_directory: platform/viewer
|
||||
build: npx cross-env QUICK_BUILD=true yarn run build:package
|
||||
start: yarn run test:e2e:serve
|
||||
wait-on: 'http://localhost:3000'
|
||||
cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
no-workspace: true # Don't persist workspace
|
||||
post-steps:
|
||||
- store_artifacts:
|
||||
path: platform/viewer/cypress/screenshots
|
||||
- store_test_results:
|
||||
path: cypress/results
|
||||
- BUILD
|
||||
- PROMOTE_TO_STAGING:
|
||||
type: approval
|
||||
requires:
|
||||
- UNIT_TESTS_PERSIST_WORKSPACE
|
||||
# Update NPM
|
||||
- DEPLOY_TO_DEV
|
||||
- DEPLOY_TO_STAGING:
|
||||
requires:
|
||||
- PROMOTE_TO_STAGING
|
||||
- PROMOTE_TO_PRODUCTION:
|
||||
type: approval
|
||||
requires:
|
||||
- DEPLOY_TO_STAGING
|
||||
- DEPLOY_TO_PRODUCTION:
|
||||
requires:
|
||||
- PROMOTE_TO_PRODUCTION
|
||||
###
|
||||
# Unit and E2E tests have already run for PR_CHECKS
|
||||
# Re-running should not gain us any confidence here
|
||||
###
|
||||
RELEASE:
|
||||
jobs:
|
||||
- NPM_PUBLISH:
|
||||
requires:
|
||||
- 'E2E: Script Tag'
|
||||
- 'E2E: PWA'
|
||||
# Update docs.ohif.org
|
||||
filters:
|
||||
branches:
|
||||
only: master
|
||||
- DOCS_PUBLISH:
|
||||
requires:
|
||||
- 'E2E: Script Tag'
|
||||
- 'E2E: PWA'
|
||||
- VIEWER_DEMO_BUILD:
|
||||
requires:
|
||||
- 'E2E: Script Tag'
|
||||
- 'E2E: PWA'
|
||||
# Update viewer.ohif.org
|
||||
- VIEWER_DEMO_PUBLISH:
|
||||
requires:
|
||||
- VIEWER_DEMO_BUILD
|
||||
# Update hub.docker.org
|
||||
- DOCKER_PUBLISH:
|
||||
filters:
|
||||
branches:
|
||||
only: master
|
||||
- DOCKER_MASTER_PUBLISH:
|
||||
requires:
|
||||
- NPM_PUBLISH
|
||||
#
|
||||
#
|
||||
# Potentially use to E2E test STAGING environment
|
||||
# before publishing to production
|
||||
# - cypress/run:
|
||||
# name: 'E2E: PWA'
|
||||
# executor: deploy-to-prod-executor
|
||||
# browser: chrome
|
||||
# working_directory: platform/viewer
|
||||
# cache-key: 'yarn-packages-{{ checksum "yarn.lock" }}'
|
||||
# yarn: true
|
||||
# record: false
|
||||
# no-workspace: true
|
||||
# store_artifacts: true
|
||||
# post-steps:
|
||||
# - store_artifacts:
|
||||
# path: platform/viewer/cypress/screenshots
|
||||
# - store_test_results:
|
||||
# path: cypress/results
|
||||
@@ -0,0 +1 @@
|
||||
PERCY_TOKEN=<your token here>
|
||||
@@ -16,6 +16,7 @@
|
||||
},
|
||||
"globals": {
|
||||
"cy": true,
|
||||
"before": true,
|
||||
"context": true,
|
||||
"Cypress": true,
|
||||
"assert": true
|
||||
|
||||
@@ -2,7 +2,7 @@
|
||||
name: "\U0001F41B Bug report"
|
||||
about: Create a report to help us improve
|
||||
title: ''
|
||||
labels: 'Community: Report :bug:'
|
||||
labels: 'Community: Report :bug:, Awaiting Reproduction, Triage :white_flag:'
|
||||
assignees: ''
|
||||
---
|
||||
|
||||
|
||||
@@ -2,7 +2,7 @@
|
||||
name: "\U0001F680 Feature request"
|
||||
about: Suggest an idea for this project
|
||||
title: ''
|
||||
labels: 'Community: Request :hand:'
|
||||
labels: 'Community: Request :hand:, Triage :white_flag:'
|
||||
assignees: ''
|
||||
---
|
||||
|
||||
|
||||
@@ -2,7 +2,7 @@
|
||||
name: "\U0001F917 Support Question"
|
||||
about: "I have a question \U0001F4AC"
|
||||
title: ''
|
||||
labels: 'Community: Question :question:'
|
||||
labels: 'Community: Question :question:, Triage :white_flag:'
|
||||
assignees: ''
|
||||
---
|
||||
|
||||
|
||||
@@ -0,0 +1,29 @@
|
||||
### Request Checklist
|
||||
|
||||
- [] Brief description of changes
|
||||
- [] Links to any relevant issues
|
||||
- [] Required status checks are passing
|
||||
- [] `@mention` a maintainer to request a review
|
||||
|
||||
#### Special
|
||||
|
||||
> If this PR is not on a branch for this repo, it is "untrusted" and does not
|
||||
> have access to env vars. Reviewers can kick off a trusted docker deploy by:
|
||||
>
|
||||
> 1. Verifying there are no malicious changes to CI build
|
||||
> 2. Using the [git-push-fork-to-upstream-branch][script] script
|
||||
> 3. Executing the manual approval step in the CI workflow
|
||||
|
||||
- [] Request docker publish of PR
|
||||
|
||||
_Want to improve this process? Consider PR'ing the ability for reviewers to add
|
||||
a label to trigger this process._
|
||||
|
||||
<!--
|
||||
Links
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[blog]: https://circleci.com/blog/triggering-trusted-ci-jobs-on-untrusted-forks/
|
||||
[script]: https://github.com/jklukas/git-push-fork-to-upstream-branch
|
||||
<!-- prettier-ignore-end -->
|
||||
+1
-1
@@ -15,7 +15,7 @@ exemptLabels:
|
||||
- 'Task: Refactor 🛠'
|
||||
- 'Task: Tests :microscope:'
|
||||
- 'PR: Awaiting Review 👀'
|
||||
- 'Triage 🏳️'
|
||||
- 'Triage :white_flag:'
|
||||
- 'Announcement 🎉'
|
||||
# Label to use when marking an issue as stale
|
||||
staleLabel: 'Stale :baguette_bread:'
|
||||
|
||||
@@ -21,6 +21,7 @@ npm-debug.log
|
||||
package-lock.json
|
||||
yarn-error.log
|
||||
.DS_Store
|
||||
.env
|
||||
|
||||
# Common Example Data Directories
|
||||
sampledata/
|
||||
|
||||
@@ -0,0 +1,5 @@
|
||||
# Specific to our non-deploy-preview deploys
|
||||
# Confgure redirects using netlify.toml
|
||||
|
||||
# PWA Redirect
|
||||
/* /index.html 200
|
||||
@@ -0,0 +1,15 @@
|
||||
{
|
||||
"name": "root",
|
||||
"private": true,
|
||||
"engines": {
|
||||
"node": ">=10",
|
||||
"npm": ">=6",
|
||||
"yarn": ">=1.16.0"
|
||||
},
|
||||
"scripts": {
|
||||
"deploy": "netlify deploy --prod --dir ./../platform/viewer/dist"
|
||||
},
|
||||
"devDependencies": {
|
||||
"netlify-cli": "^2.21.0"
|
||||
}
|
||||
}
|
||||
Vendored
+9
-7
@@ -1,10 +1,8 @@
|
||||
{
|
||||
"editor.rulers": [80, 120],
|
||||
|
||||
// ===
|
||||
// Spacing
|
||||
// ===
|
||||
|
||||
"editor.insertSpaces": true,
|
||||
"editor.tabSize": 2,
|
||||
"editor.trimAutoWhitespace": true,
|
||||
@@ -12,19 +10,23 @@
|
||||
"files.eol": "\n",
|
||||
"files.insertFinalNewline": true,
|
||||
"files.trimFinalNewlines": true,
|
||||
|
||||
// ===
|
||||
// Event Triggers
|
||||
// ===
|
||||
|
||||
"editor.formatOnSave": true,
|
||||
"eslint.autoFixOnSave": true,
|
||||
"eslint.run": "onSave",
|
||||
"eslint.validate": [
|
||||
{ "language": "javascript", "autoFix": true },
|
||||
{ "language": "javascriptreact", "autoFix": true }
|
||||
{
|
||||
"language": "javascript",
|
||||
"autoFix": true
|
||||
},
|
||||
{
|
||||
"language": "javascriptreact",
|
||||
"autoFix": true
|
||||
}
|
||||
],
|
||||
"prettier.disableLanguages": [],
|
||||
"prettier.disableLanguages": ["html"],
|
||||
"prettier.endOfLine": "lf",
|
||||
"workbench.colorCustomizations": {}
|
||||
}
|
||||
@@ -1,5 +1,9 @@
|
||||
// ~~ ENV
|
||||
const dotenv = require('dotenv');
|
||||
//
|
||||
const path = require('path');
|
||||
const webpack = require('webpack');
|
||||
const PACKAGE = require('../platform/viewer/package.json');
|
||||
// ~~ RULES
|
||||
const loadShadersRule = require('./rules/loadShaders.js');
|
||||
const loadWebWorkersRule = require('./rules/loadWebWorkers.js');
|
||||
@@ -9,6 +13,10 @@ const TerserJSPlugin = require('terser-webpack-plugin');
|
||||
// ~~ ENV VARS
|
||||
const NODE_ENV = process.env.NODE_ENV;
|
||||
const QUICK_BUILD = process.env.QUICK_BUILD;
|
||||
const BUILD_NUM = process.env.CIRCLE_BUILD_NUM || '0';
|
||||
|
||||
//
|
||||
dotenv.config();
|
||||
|
||||
module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
|
||||
if (!process.env.NODE_ENV) {
|
||||
@@ -68,6 +76,8 @@ module.exports = (env, argv, { SRC_DIR, DIST_DIR }) => {
|
||||
'process.env.DEBUG': JSON.stringify(process.env.DEBUG),
|
||||
'process.env.APP_CONFIG': JSON.stringify(process.env.APP_CONFIG || ''),
|
||||
'process.env.PUBLIC_URL': JSON.stringify(process.env.PUBLIC_URL || '/'),
|
||||
'process.env.VERSION_NUMBER': JSON.stringify(PACKAGE.version || ''),
|
||||
'process.env.BUILD_NUM': JSON.stringify(BUILD_NUM),
|
||||
}),
|
||||
],
|
||||
// Fix: https://github.com/webpack-contrib/css-loader/issues/447#issuecomment-285598881
|
||||
|
||||
@@ -44,6 +44,7 @@ RUN yarn config set workspaces-experimental true
|
||||
RUN yarn install
|
||||
|
||||
ENV PATH /usr/src/app/node_modules/.bin:$PATH
|
||||
ENV QUICK_BUILD true
|
||||
# ENV GENERATE_SOURCEMAP=false
|
||||
# ENV REACT_APP_CONFIG=config/default.js
|
||||
|
||||
|
||||
@@ -22,10 +22,12 @@
|
||||
[![NPM downloads][npm-downloads-image]][npm-url]
|
||||
[![Pulls][docker-pulls-img]][docker-image-url]
|
||||
[![MIT License][license-image]][license-url]
|
||||
[](https://app.fossa.io/projects/git%2Bgithub.com%2FOHIF%2FViewers?ref=badge_shield)
|
||||
|
||||
[![Netlify Status][netlify-image]][netlify-url]
|
||||
[![CircleCI][circleci-image]][circleci-url]
|
||||
[![codecov][codecov-image]][codecov-url]
|
||||
[![This project is using Percy.io for visual regression testing.][percy-image]](percy-url)
|
||||
[](#contributors)
|
||||
<!-- prettier-ignore-end -->
|
||||
|
||||
@@ -288,6 +290,8 @@ MIT © [OHIF](https://github.com/OHIF)
|
||||
[docker-image-url]: https://hub.docker.com/r/ohif/viewer
|
||||
[license-image]: https://img.shields.io/badge/license-MIT-blue.svg?style=flat-square
|
||||
[license-url]: LICENSE
|
||||
[percy-image]: https://percy.io/static/images/percy-badge.svg
|
||||
[percy-url]: https://percy.io/Open-Health-Imaging-Foundation/OHIF-Viewer
|
||||
<!-- Links -->
|
||||
[monorepo]: https://en.wikipedia.org/wiki/Monorepo
|
||||
[how-to-fork]: https://help.github.com/en/articles/fork-a-repo
|
||||
@@ -321,3 +325,6 @@ MIT © [OHIF](https://github.com/OHIF)
|
||||
[extension-vtk]: extensions/vtk/README.md
|
||||
[vtk-npm]: https://www.npmjs.com/package/@ohif/extension-vtk
|
||||
<!-- prettier-ignore-end -->
|
||||
|
||||
|
||||
[](https://app.fossa.io/projects/git%2Bgithub.com%2FOHIF%2FViewers?ref=badge_large)
|
||||
@@ -1,5 +1,6 @@
|
||||
# OHIF Viewers
|
||||
|
||||
- [Our Process](our-process.md)
|
||||
- Essentials
|
||||
- [Getting Started](essentials/getting-started.md)
|
||||
- [Installation](essentials/installation.md)
|
||||
@@ -47,5 +48,6 @@
|
||||
|
||||
- [FAQ](frequently-asked-questions.md)
|
||||
- [Contributing](contributing/index.md)
|
||||
- [Continuous Integration](continous-integration.md)
|
||||
- [Browser Support](browser-support.md)
|
||||
- [Help](help.md)
|
||||
Binary file not shown.
|
After Width: | Height: | Size: 7.8 KiB |
Binary file not shown.
|
After Width: | Height: | Size: 5.7 KiB |
Binary file not shown.
|
After Width: | Height: | Size: 4.7 KiB |
Binary file not shown.
|
After Width: | Height: | Size: 6.2 KiB |
@@ -0,0 +1,109 @@
|
||||
# Continous Integration (CI)
|
||||
|
||||
This repository uses `CircleCI` and `Netlify` for continous integration.
|
||||
|
||||
## Deploy Previews
|
||||
|
||||
[Netlify Deploy previews][deploy-previews] are generated for every pull request.
|
||||
They allow pull request authors and reviewers to "Preview" the OHIF Viewer as if
|
||||
the changes had been merged.
|
||||
|
||||
Deploy previews can be configured by modifying the `netlify.toml` file in the
|
||||
root of the repository. Some additional scripts/assets for netlify are included
|
||||
in the root `.netlify` directory.
|
||||
|
||||
## Workflows
|
||||
|
||||
[CircleCI Workflows][circleci-workflows] are a set of rules for defining a
|
||||
collection of jobs and their run order. They are self-documenting and their
|
||||
configuration can be found in our CircleCI configuration file:
|
||||
`.circleci/config.yml`.
|
||||
|
||||
### Workflow: PR_CHECKS
|
||||
|
||||
The PR_CHECKS workflow (Pull Request Checks) runs our automated unit and
|
||||
end-to-end tests for every code check-in. These tests must all pass before code
|
||||
can be merged to our `master` branch.
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/WORKFLOW_PR_CHECKS.png">
|
||||
<img src="/assets/img/WORKFLOW_PR_CHECKS.png" alt="workflow diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Workflow diagram for PR_CHECKS</i></div>
|
||||
</div>
|
||||
|
||||
### Workflow: PR_OPTIONAL_DOCKER_PUBLISH
|
||||
|
||||
The PR_OPTIONAL_DOCKER_PUBLISH workflow allows for "manual approval" to publish
|
||||
the pull request as a tagged docker image. This is helpful when changes need to
|
||||
be tested with the Google Adapter before merging to `master`.
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/WORKFLOW_PR_OPTIONAL_DOCKER_PUBLISH.png">
|
||||
<img src="/assets/img/WORKFLOW_PR_OPTIONAL_DOCKER_PUBLISH.png" alt="workflow diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Workflow diagram for PR_WORKFLOW_PR_OPTIONAL_DOCKER_PUBLISH</i></div>
|
||||
</div>
|
||||
|
||||
> NOTE: This workflow will fail unless it's for a branch on our `upstream`
|
||||
> repository. If you need this functionality, but the branch is from a fork,
|
||||
> merge the changes to a short-lived `feature/` branch on `upstream`
|
||||
|
||||
### Workflow: DEPLOY
|
||||
|
||||
The DEPLOY workflow deploys the OHIF Viewer when changes are merged to master.
|
||||
It uses the Netlify CLI to deploy assets created as part of the repository's PWA
|
||||
Build process (`yarn run build`). The workflow allows for "Manual Approval" to
|
||||
promote the build to `STAGING` and `PRODUCTION` environments.
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/WORKFLOW_DEPLOY.png">
|
||||
<img src="/assets/img/WORKFLOW_DEPLOY.png" alt="workflow diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Workflow diagram for WORKFLOW_DEPLOY</i></div>
|
||||
</div>
|
||||
|
||||
| Environment | Description | URL |
|
||||
| ----------- | ---------------------------------------------------------------------------------- | --------------------------------------------- |
|
||||
| Development | Always reflects latest changes on `master` branch. | [Netlify][netlify-dev] / [OHIF][ohif-dev] |
|
||||
| Staging | For manual testing before promotion to prod. Keeps development workflow unblocked. | [Netlify][netlify-stage] / [OHIF][ohif-stage] |
|
||||
| Production | Stable, tested, updated less frequently. | [Netlify][netlify-prod] / [OHIF][ohif-prod] |
|
||||
|
||||
### Workflow: RELEASE
|
||||
|
||||
The RELEASE workflow publishes our `npm` packages, updated documentation, and
|
||||
`docker` image when changes are merged to master. `Lerna` and "Semantic Commit
|
||||
Syntax" are used to independently version and publish the many packages in our
|
||||
monorepository. If a new version is cut/released, a Docker image is created.
|
||||
Documentation is generated with `gitbook` and pushed to our `gh-pages` branch.
|
||||
GitHub hosts the `gh-pages` branch with GitHub Pages.
|
||||
|
||||
- Platform Packages: https://github.com/ohif/viewers/#platform
|
||||
- Extension Packages: https://github.com/ohif/viewers/#extensions
|
||||
- Documentation: https://docs.ohif.org/
|
||||
|
||||
<div style="text-align: center;">
|
||||
<a href="/assets/img/WORKFLOW_RELEASE.png">
|
||||
<img src="/assets/img/WORKFLOW_RELEASE.png" alt="workflow diagram" style="margin: 0 auto; max-width: 500px;" />
|
||||
</a>
|
||||
<div><i>Workflow diagram for WORKFLOW_RELEASE</i></div>
|
||||
</div>
|
||||
|
||||
### HOTFIX
|
||||
|
||||
_Not yet implemented_
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[deploy-previews]: https://www.netlify.com/blog/2016/07/20/introducing-deploy-previews-in-netlify/
|
||||
[circleci-workflows]: https://circleci.com/docs/2.0/workflows/
|
||||
[netlify-dev]: https://ohif-dev.netlify.com
|
||||
[netlify-stage]: https://ohif-stage.netlify.com
|
||||
[netlify-prod]: https://ohif-prod.netlify.com
|
||||
[ohif-dev]: https://viewer-dev.ohif.org
|
||||
[ohif-stage]: https://viewer-stage.ohif.org
|
||||
[ohif-prod]: https://viewer-prod.ohif.org
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -7,8 +7,8 @@ like to discuss the changes you intend to make to clarify where or how they
|
||||
should be implemented, please don't hesitate to create a new issue. At a
|
||||
minimum, you may want to read the following documentation:
|
||||
|
||||
- [Essentials: Getting Started](./essentials/getting-started.md)
|
||||
- [Advanced: Architecture](./advanced/architecture.md)
|
||||
- [Essentials: Getting Started](/essentials/getting-started.md)
|
||||
- [Advanced: Architecture](/advanced/architecture.md)
|
||||
|
||||
Pull requests that are:
|
||||
|
||||
|
||||
@@ -48,7 +48,7 @@ If everything worked as expected, you should have a new `dist/` directory in the
|
||||
project's folder. It should roughly resemble the following:
|
||||
|
||||
```bash
|
||||
dist/
|
||||
<root>platform/viewer/dist/
|
||||
├── app-config.js
|
||||
├── app.bundle.js
|
||||
├── app.css
|
||||
|
||||
@@ -0,0 +1,109 @@
|
||||
# Our Process
|
||||
|
||||
Our process is a living, breathing thing. We strive to have regular [retrospectives][retrospective] that help us
|
||||
shape and adapt our process to our team's current needs. This document attempts to capture the broad strokes of
|
||||
that process in an effort to:
|
||||
|
||||
- Strengthen community member involvement and understanding
|
||||
- Welcome feedback and helpful suggestions
|
||||
|
||||
|
||||
## Overview
|
||||
|
||||
- [Issue Triage](#issue-triage)
|
||||
- [Issue Curation ("backlog grooming")](#issue-curation-backlog-grooming)
|
||||
- [Contributions (Pull Requests)](#contributions-pull-requests)
|
||||
- [Releases](#releases)
|
||||
|
||||
|
||||
_Include issue lifecycle diagram_
|
||||
|
||||
## Issue Triage
|
||||
|
||||
[GitHub issues][gh-issues] are the best way to provide feedback, ask questions, and suggest changes to the OHIF Viewer's core
|
||||
team. Community issues generally fall into one of three categories, and are marked with a `triage` label when created.
|
||||
|
||||
|
||||
|Issue Template Name | Description |
|
||||
|------------------------|-----------------------------------------------------------------------------------------|
|
||||
|Community: Report 🐛 | Describe a new issue; Provide steps to reproduce; Expected versus actual result? |
|
||||
|Community: Request ✋ | Describe a proposed new feature. Why should it be implemented? What is the impact/value? |
|
||||
|Community: Question ❓ | Seek clarification or assistance relevant to the repository. |
|
||||
|
||||
_table 1. issue template names and descriptions_
|
||||
|
||||
Issues that require `triage` are akin to support tickets. As this is often our first contact with would-be adopters and
|
||||
contributors, it's important that we strive for timely responses and satisfactory resolutions. We attempt to accomplish this
|
||||
by:
|
||||
|
||||
1. Responding to issues requiring `triage` at least once a week
|
||||
2. Create new "official issues" from "community issues"
|
||||
3. Provide clear guidance and next steps (when applicable)
|
||||
4. Regularly clean up old (stale) issues
|
||||
|
||||
> :pencil: Less obviously, patterns in the issues being reported can highlight areas that need improvement. For example, users often have
|
||||
difficulty navigating CORS issues when deploying the OHIF Viewer -- how do we best reduce our ticket volume for this issue?
|
||||
|
||||
### Backlogged Issues
|
||||
|
||||
Community issues serve as vehicles of discussion that lead us to "backlogged issues". Backlogged issues are the distilled and actionable information extracted from community issues. They contain the scope and requirements necessary for hand-off to a core-team (or community) contributor ^_^
|
||||
|
||||
|Category| Description| Labels|
|
||||
|--------|-----| ---------|
|
||||
| Bugs | An issue with steps that produce a bug (an unexpected result). | [Bug: Verified 🐛][label-bug] |
|
||||
| Stories| A feature/enhancement with a clear benefit, boundaries, and requirements. | [Story 🙌][label-story] |
|
||||
| Tasks | Changes that improve [UX], [DX], or test coverage; but don't impact application behavior | [Task: CI/Tooling 🤖][label-tooling], [Task: Docs 📖][label-docs], [Task: Refactor 🛠][label-refactor], [Task: Tests 🔬][label-tests] |
|
||||
|
||||
_table 2. backlogged issue types ([full list of labels][gh-labels])_
|
||||
|
||||
|
||||
## Issue Curation (["backlog grooming"][groom-backlog])
|
||||
|
||||
If a [GitHub issue][gh-issues] has a `bug`, `story`, or `task` label; it's on our backlog. If an issue is on our backlog, it means we are, at the very least, committed to reviewing any community drafted Pull Requests to complete the issue. If you're interested in seeing an issue completed but don't know where to start, please don't hesitate to leave a comment!
|
||||
|
||||
While we don't yet have a long-term or quarterly road map, we do regularly add items to our ["Active Development" GitHub Project Board][gh-board]. Items on this project board are either in active development by Core Team members, or queued up for development as in-progress items are completed.
|
||||
|
||||
> :pencil: Want to contribute but not sure where to start? Check out [Up for grabs][label-grabs] issues and our [Contributing documentation][contributing-docs]
|
||||
|
||||
## Contributions (Pull Requests)
|
||||
|
||||
Incoming Pull Requests (PRs) are triaged using the following labels. Code review is performed on all PRs where the bug fix or added functionality is deemed appropriate:
|
||||
|
||||
- PR: Bug Fix - Describes a PR filed to address a Bug.
|
||||
- PR: Draft - Describes a PR filed to gather early feedback from the core team, but which is not intended for merging in the short term.
|
||||
- Awaiting Response - Describes a PR where the core team is waiting for additional information from the author. This may occur before or after code review.
|
||||
- Awaiting Review - Describes a PR where the core team has not yet performed a code review.
|
||||
- Awaiting Revisions - Following code review, this label is applied until the author has made sufficient changes.
|
||||
|
||||
We rely on GitHub Checks and integrations with third party services to evaluate changes in code quality and test coverage. Tests must pass before a PR can be merged to master, and code quality and test coverage must not changed by a significant margin. For some repositories, visual screenshot-based tests are also included, and video recordings of end-to-end tests are stored for later review.
|
||||
|
||||
[You can read more about our continous integration efforts here](/continous-integration.md)
|
||||
|
||||
## Releases
|
||||
|
||||
Releases are made automatically based on the type of commits which have been merged (major.minor.patch). Releases are automatically pushed to NPM. Release notes are automatically generated. Users can subscribe to GitHub and NPM releases.
|
||||
|
||||
Important announcements are made on GitHub, tagged as Announcement, and pinned so that they remain at the top of the Issue page.
|
||||
|
||||
The Core team occasionally performs full manual testing to begin the process of releasing a Stable version. Once testing is complete, the known issues are addressed and a Stable version
|
||||
|
||||
|
||||
<!--
|
||||
LINKS
|
||||
-->
|
||||
|
||||
<!-- prettier-ignore-start -->
|
||||
[groom-backlog]: https://www.agilealliance.org/glossary/backlog-grooming
|
||||
[retrospective]: https://www.atlassian.com/team-playbook/plays/retrospective
|
||||
[gh-issues]: https://github.com/OHIF/Viewers/issues/new/choose
|
||||
[gh-labels]: https://github.com/OHIF/Viewers/labels
|
||||
[label-story]: https://github.com/OHIF/Viewers/labels/Story%20%3Araised_hands%3A
|
||||
[label-tooling]: https://github.com/OHIF/Viewers/labels/Task%3A%20CI%2FTooling%20%3Arobot%3A
|
||||
[label-docs]: https://github.com/OHIF/Viewers/labels/Task%3A%20Docs%20%3Abook%3A
|
||||
[label-refactor]: https://github.com/OHIF/Viewers/labels/Task%3A%20Refactor%20%3Ahammer_and_wrench%3A
|
||||
[label-tests]: https://github.com/OHIF/Viewers/labels/Task%3A%20Tests%20%3Amicroscope%3A
|
||||
[label-bug]: https://github.com/OHIF/Viewers/labels/Bug%3A%20Verified%20%3Abug%3A
|
||||
[gh-board]: https://github.com/OHIF/Viewers/projects/4
|
||||
[label-grabs]: https://github.com/OHIF/Viewers/issues?q=is%3Aissue+is%3Aopen+label%3A%22Up+For+Grabs+%3Araising_hand_woman%3A%22
|
||||
[contributing-docs]: https://docs.ohif.org/contributing/
|
||||
<!-- prettier-ignore-end -->
|
||||
@@ -11,7 +11,10 @@ export default {
|
||||
* LIFECYCLE HOOKS
|
||||
*/
|
||||
|
||||
preRegistration(extensionConfiguration) {},
|
||||
preRegistration({
|
||||
servicesManager,
|
||||
configuration: extensionConfiguration,
|
||||
}) {},
|
||||
|
||||
/**
|
||||
* MODULE GETTERS
|
||||
|
||||
@@ -3,6 +3,58 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
# [1.6.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.5.1...@ohif/extension-cornerstone@1.6.0) (2019-11-19)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* New dialog service ([#1202](https://github.com/OHIF/Viewers/issues/1202)) ([f65639c](https://github.com/OHIF/Viewers/commit/f65639c2b0dab01decd20cab2cef4263cb4fab37))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.5.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.5.0...@ohif/extension-cornerstone@1.5.1) (2019-11-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.5.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.4.1...@ohif/extension-cornerstone@1.5.0) (2019-11-13)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* expose UiNotifications service ([#1172](https://github.com/OHIF/Viewers/issues/1172)) ([5c04e34](https://github.com/OHIF/Viewers/commit/5c04e34c8fb2394ab7acd9eb4f2ab12afeb2f255))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.4.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.4.0...@ohif/extension-cornerstone@1.4.1) (2019-11-08)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* Add a fallback metadata provider which pulls metadata from WADO-… ([#1158](https://github.com/OHIF/Viewers/issues/1158)) ([31b1adf](https://github.com/OHIF/Viewers/commit/31b1adfa5993d6c8e3e9c8b03fa9856f2621b037))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.4.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.3.1...@ohif/extension-cornerstone@1.4.0) (2019-10-26)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Snapshot Download Tool ([#840](https://github.com/OHIF/Viewers/issues/840)) ([450e098](https://github.com/OHIF/Viewers/commit/450e0981a5ba054fcfcb85eeaeb18371af9088f8))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-cornerstone@1.3.0...@ohif/extension-cornerstone@1.3.1) (2019-10-09)
|
||||
|
||||
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone",
|
||||
"version": "1.3.1",
|
||||
"version": "1.6.0",
|
||||
"description": "OHIF extension for Cornerstone",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -48,6 +48,7 @@
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"classnames": "^2.2.6",
|
||||
"lodash.throttle": "^4.1.1",
|
||||
"query-string": "^6.8.3",
|
||||
"react-cornerstone-viewport": "2.x.x"
|
||||
}
|
||||
}
|
||||
@@ -24,8 +24,8 @@ export default {
|
||||
* @param {object} [configuration={}]
|
||||
* @param {object|array} [configuration.csToolsConfig] - Passed directly to `initCornerstoneTools`
|
||||
*/
|
||||
preRegistration(configuration = {}) {
|
||||
init(configuration);
|
||||
preRegistration({ servicesManager, configuration = {} }) {
|
||||
init({ servicesManager, configuration });
|
||||
},
|
||||
getViewportModule() {
|
||||
return OHIFCornerstoneViewport;
|
||||
|
||||
@@ -2,13 +2,33 @@ import OHIF from '@ohif/core';
|
||||
import cornerstone from 'cornerstone-core';
|
||||
import csTools from 'cornerstone-tools';
|
||||
import initCornerstoneTools from './initCornerstoneTools.js';
|
||||
import queryString from 'query-string';
|
||||
|
||||
function fallbackMetaDataProvider(type, imageId) {
|
||||
if (!imageId.includes('wado?requestType=WADO')) {
|
||||
return;
|
||||
}
|
||||
|
||||
// If you call for an WADO-URI imageId and get no
|
||||
// metadata, try reformatting to WADO-RS imageId
|
||||
const qs = queryString.parse(imageId);
|
||||
const wadoRoot = window.store.getState().servers.servers[0].wadoRoot;
|
||||
const wadoRsImageId = `wadors:${wadoRoot}/studies/${qs.studyUID}/series/${
|
||||
qs.seriesUID
|
||||
}/instances/${qs.objectUID}/frames/${qs.frame || 1}`;
|
||||
|
||||
return cornerstone.metaData.get(type, wadoRsImageId);
|
||||
}
|
||||
|
||||
// Add this fallback provider with a low priority so it is handled last
|
||||
cornerstone.metaData.addProvider(fallbackMetaDataProvider, -1);
|
||||
|
||||
/**
|
||||
*
|
||||
* @param {object} configuration
|
||||
* @param {Object|Array} configuration.csToolsConfig
|
||||
*/
|
||||
export default function init(configuration = {}) {
|
||||
export default function init({ servicesManager, configuration = {} }) {
|
||||
const { csToolsConfig } = configuration;
|
||||
const { StackManager } = OHIF.utils;
|
||||
const metadataProvider = new OHIF.cornerstone.MetadataProvider();
|
||||
@@ -78,6 +98,7 @@ export default function init(configuration = {}) {
|
||||
];
|
||||
|
||||
tools.forEach(tool => csTools.addTool(tool));
|
||||
|
||||
csTools.setToolActive('Pan', { mouseButtonMask: 4 });
|
||||
csTools.setToolActive('Zoom', { mouseButtonMask: 2 });
|
||||
csTools.setToolActive('Wwwc', { mouseButtonMask: 1 });
|
||||
|
||||
@@ -23,6 +23,17 @@ const TOOLBAR_BUTTON_TYPES = {
|
||||
BUILT_IN: 'builtIn',
|
||||
};
|
||||
|
||||
const TOOLBAR_BUTTON_BEHAVIORS = {
|
||||
CINE: 'CINE',
|
||||
DOWNLOAD_SCREEN_SHOT: 'DOWNLOAD_SCREEN_SHOT',
|
||||
};
|
||||
|
||||
/* TODO: Export enums through a extension manager. */
|
||||
const enums = {
|
||||
TOOLBAR_BUTTON_TYPES,
|
||||
TOOLBAR_BUTTON_BEHAVIORS,
|
||||
};
|
||||
|
||||
const definitions = [
|
||||
{
|
||||
id: 'StackScroll',
|
||||
@@ -102,7 +113,7 @@ const definitions = [
|
||||
//
|
||||
type: TOOLBAR_BUTTON_TYPES.BUILT_IN,
|
||||
options: {
|
||||
behavior: 'CINE',
|
||||
behavior: TOOLBAR_BUTTON_BEHAVIORS.CINE,
|
||||
},
|
||||
},
|
||||
{
|
||||
@@ -213,6 +224,17 @@ const definitions = [
|
||||
commandName: 'setToolActive',
|
||||
commandOptions: { toolName: 'Eraser' },
|
||||
},
|
||||
{
|
||||
id: 'Download',
|
||||
label: 'Download',
|
||||
icon: 'create-screen-capture',
|
||||
//
|
||||
type: TOOLBAR_BUTTON_TYPES.BUILT_IN,
|
||||
options: {
|
||||
behavior: TOOLBAR_BUTTON_BEHAVIORS.DOWNLOAD_SCREEN_SHOT,
|
||||
togglable: true,
|
||||
},
|
||||
},
|
||||
],
|
||||
},
|
||||
];
|
||||
|
||||
@@ -3,6 +3,17 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [1.0.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@1.0.0...@ohif/extension-dicom-html@1.0.1) (2019-10-29)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* Set SR viewport as active by interaction ([#1118](https://github.com/OHIF/Viewers/issues/1118)) ([5b33417](https://github.com/OHIF/Viewers/commit/5b334175c370afb930b4b6dbd307ddece8f850e3))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.0.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-dicom-html@0.50.8...@ohif/extension-dicom-html@1.0.0) (2019-09-27)
|
||||
|
||||
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-dicom-html",
|
||||
"version": "1.0.0",
|
||||
"version": "1.0.1",
|
||||
"description": "OHIF extension for rendering structured reports to HTML",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -0,0 +1,33 @@
|
||||
import OHIF from '@ohif/core';
|
||||
import { connect } from 'react-redux';
|
||||
import DicomHtmlViewport from './DicomHtmlViewport';
|
||||
|
||||
const { setViewportActive } = OHIF.redux.actions;
|
||||
|
||||
const mapStateToProps = (state, ownProps) => {
|
||||
const { viewportIndex, byteArray } = ownProps;
|
||||
const activeViewportIndex = state.viewports;
|
||||
|
||||
return {
|
||||
viewportIndex,
|
||||
activeViewportIndex,
|
||||
byteArray,
|
||||
};
|
||||
};
|
||||
|
||||
const mapDispatchToProps = (dispatch, ownProps) => {
|
||||
const { viewportIndex } = ownProps;
|
||||
|
||||
return {
|
||||
setViewportActive: () => {
|
||||
dispatch(setViewportActive(viewportIndex));
|
||||
},
|
||||
};
|
||||
};
|
||||
|
||||
const ConnectedDicomHtmlViewport = connect(
|
||||
mapStateToProps,
|
||||
mapDispatchToProps
|
||||
)(DicomHtmlViewport);
|
||||
|
||||
export default ConnectedDicomHtmlViewport;
|
||||
@@ -1,6 +1,8 @@
|
||||
import React, { Component } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import * as dcmjs from 'dcmjs';
|
||||
import TypedArrayProp from './TypedArrayProp';
|
||||
|
||||
import './DicomHtmlViewport.css';
|
||||
|
||||
function getRelationshipString(data) {
|
||||
@@ -30,7 +32,7 @@ function getValueString(data) {
|
||||
const {
|
||||
CodeMeaning,
|
||||
CodeValue,
|
||||
CodingSchemeDesignator
|
||||
CodingSchemeDesignator,
|
||||
} = data.ConceptNameCodeSequence;
|
||||
|
||||
return `${CodeMeaning} (${CodeValue}, ${CodingSchemeDesignator})`;
|
||||
@@ -75,7 +77,7 @@ function constructContentSequence(data, header) {
|
||||
}
|
||||
|
||||
const result = {
|
||||
items
|
||||
items,
|
||||
};
|
||||
|
||||
if (header) {
|
||||
@@ -106,9 +108,7 @@ const { DicomMetaDictionary, DicomMessage } = dcmjs.data;
|
||||
function getMainData(data) {
|
||||
const root = [];
|
||||
|
||||
const patientValue = `${data.PatientName} (${data.PatientSex}, #${
|
||||
data.PatientID
|
||||
})`;
|
||||
const patientValue = `${data.PatientName} (${data.PatientSex}, #${data.PatientID})`;
|
||||
root.push(getMainDataItem('Patient', patientValue));
|
||||
|
||||
const studyValue = data.StudyDescription;
|
||||
@@ -117,15 +117,13 @@ function getMainData(data) {
|
||||
const seriesValue = `${data.SeriesDescription} (#${data.SeriesNumber})`;
|
||||
root.push(getMainDataItem('Series', seriesValue));
|
||||
|
||||
const manufacturerValue = `${data.Manufacturer} (${
|
||||
data.ManufacturerModelName
|
||||
}, #${data.DeviceSerialNumber})`;
|
||||
const manufacturerValue = `${data.Manufacturer} (${data.ManufacturerModelName}, #${data.DeviceSerialNumber})`;
|
||||
|
||||
root.push(getMainDataItem('Manufacturer', manufacturerValue));
|
||||
|
||||
const mainDataObjects = {
|
||||
CompletionFlag: 'Completion flag',
|
||||
VerificationFlag: 'Verification flag'
|
||||
VerificationFlag: 'Verification flag',
|
||||
};
|
||||
|
||||
Object.keys(mainDataObjects).forEach(key => {
|
||||
@@ -154,7 +152,7 @@ const getContentSequence = (data, level = 1) => {
|
||||
const {
|
||||
CodeMeaning,
|
||||
CodeValue,
|
||||
CodingSchemeDesignator
|
||||
CodingSchemeDesignator,
|
||||
} = data.ConceptNameCodeSequence;
|
||||
|
||||
header = `${CodeMeaning} (${CodeValue} - ${CodingSchemeDesignator})`;
|
||||
@@ -198,11 +196,14 @@ function getMainDataItem(key, value) {
|
||||
class DicomHtmlViewport extends Component {
|
||||
state = {
|
||||
content: null,
|
||||
error: null
|
||||
error: null,
|
||||
};
|
||||
|
||||
static propTypes = {
|
||||
byteArray: TypedArrayProp.uint8
|
||||
byteArray: TypedArrayProp.uint8,
|
||||
setViewportActive: PropTypes.func.isRequired,
|
||||
viewportIndex: PropTypes.number.isRequired,
|
||||
activeViewportIndex: PropTypes.number.isRequired,
|
||||
};
|
||||
|
||||
componentDidMount() {
|
||||
@@ -225,15 +226,34 @@ class DicomHtmlViewport extends Component {
|
||||
);
|
||||
|
||||
this.setState({
|
||||
content
|
||||
content,
|
||||
});
|
||||
}
|
||||
|
||||
setViewportActiveHandler = () => {
|
||||
const {
|
||||
setViewportActive,
|
||||
viewportIndex,
|
||||
activeViewportIndex,
|
||||
} = this.props;
|
||||
|
||||
if (viewportIndex !== activeViewportIndex) {
|
||||
setViewportActive();
|
||||
}
|
||||
};
|
||||
|
||||
render() {
|
||||
const { content, error } = this.state;
|
||||
|
||||
return (
|
||||
<div className={'DicomHtmlViewport'}>
|
||||
{this.state.content}
|
||||
{this.state.error && <h2>{JSON.stringify(this.state.error)}</h2>}
|
||||
<div
|
||||
data-cy="dicom-html-viewport"
|
||||
className="DicomHtmlViewport"
|
||||
onClick={this.setViewportActiveHandler}
|
||||
onScroll={this.setViewportActiveHandler}
|
||||
>
|
||||
{content}
|
||||
{error && <h2>{JSON.stringify(error)}</h2>}
|
||||
</div>
|
||||
);
|
||||
}
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
import React, { Component } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import DicomHtmlViewport from './DicomHtmlViewport';
|
||||
import OHIF from '@ohif/core';
|
||||
import ConnectedDicomHtmlViewport from './ConnectedDicomHtmlViewport';
|
||||
|
||||
const { DicomLoaderService } = OHIF.utils;
|
||||
|
||||
class OHIFDicomHtmlViewport extends Component {
|
||||
@@ -9,6 +10,7 @@ class OHIFDicomHtmlViewport extends Component {
|
||||
studies: PropTypes.object,
|
||||
displaySet: PropTypes.object,
|
||||
viewportIndex: PropTypes.number,
|
||||
viewportData: PropTypes.object,
|
||||
};
|
||||
|
||||
state = {
|
||||
@@ -40,7 +42,10 @@ class OHIFDicomHtmlViewport extends Component {
|
||||
return (
|
||||
<>
|
||||
{this.state.byteArray && (
|
||||
<DicomHtmlViewport byteArray={this.state.byteArray} />
|
||||
<ConnectedDicomHtmlViewport
|
||||
byteArray={this.state.byteArray}
|
||||
viewportIndex={this.props.viewportIndex}
|
||||
/>
|
||||
)}
|
||||
{this.state.error && <h2>{JSON.stringify(this.state.error)}</h2>}
|
||||
</>
|
||||
|
||||
@@ -3,6 +3,316 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.53.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.53.10...@ohif/extension-vtk@0.53.11) (2019-11-19)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.53.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.53.9...@ohif/extension-vtk@0.53.10) (2019-11-19)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.53.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.53.8...@ohif/extension-vtk@0.53.9) (2019-11-18)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.53.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.53.7...@ohif/extension-vtk@0.53.8) (2019-11-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.53.7](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.53.6...@ohif/extension-vtk@0.53.7) (2019-11-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.53.6](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.53.5...@ohif/extension-vtk@0.53.6) (2019-11-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.53.5](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.53.4...@ohif/extension-vtk@0.53.5) (2019-11-13)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.53.4](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.53.3...@ohif/extension-vtk@0.53.4) (2019-11-12)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.53.3](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.53.2...@ohif/extension-vtk@0.53.3) (2019-11-11)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* mpr2d vtkjs viewport does not render if range is set to `NaN` values ([#1157](https://github.com/OHIF/Viewers/issues/1157)) ([84a0972](https://github.com/OHIF/Viewers/commit/84a097212babc0f98198b9ced1def9743973a5a8))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.53.2](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.53.1...@ohif/extension-vtk@0.53.2) (2019-11-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.53.1](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.53.0...@ohif/extension-vtk@0.53.1) (2019-11-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.53.0](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.32...@ohif/extension-vtk@0.53.0) (2019-11-06)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* modal provider ([#1151](https://github.com/OHIF/Viewers/issues/1151)) ([75d88bc](https://github.com/OHIF/Viewers/commit/75d88bc454710d2dcdbc7d68c4d9df041159c840)), closes [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1146](https://github.com/OHIF/Viewers/issues/1146) [#1142](https://github.com/OHIF/Viewers/issues/1142) [#1143](https://github.com/OHIF/Viewers/issues/1143) [#1110](https://github.com/OHIF/Viewers/issues/1110) [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1119](https://github.com/OHIF/Viewers/issues/1119)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.32](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.31...@ohif/extension-vtk@0.52.32) (2019-11-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.31](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.30...@ohif/extension-vtk@0.52.31) (2019-11-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
## [0.52.30](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.29...@ohif/extension-vtk@0.52.30) (2019-11-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.29](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.28...@ohif/extension-vtk@0.52.29) (2019-11-04)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Upgrade react-vtkjs-viewport to fix volume orientation ([#1143](https://github.com/OHIF/Viewers/issues/1143)) ([1d86b1a](https://github.com/OHIF/Viewers/commit/1d86b1a102fc422053cff103de8c12ca6f437354))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.28](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.27...@ohif/extension-vtk@0.52.28) (2019-11-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.27](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.26...@ohif/extension-vtk@0.52.27) (2019-10-31)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.26](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.25...@ohif/extension-vtk@0.52.26) (2019-10-30)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.25](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.24...@ohif/extension-vtk@0.52.25) (2019-10-29)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.24](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.23...@ohif/extension-vtk@0.52.24) (2019-10-29)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.23](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.22...@ohif/extension-vtk@0.52.23) (2019-10-28)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.22](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.21...@ohif/extension-vtk@0.52.22) (2019-10-28)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* MIP styling ([#1109](https://github.com/OHIF/Viewers/issues/1109)) ([0d21cc6](https://github.com/OHIF/Viewers/commit/0d21cc6ad0c47706b9e62e05fe2a0f1d86339760))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.21](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.20...@ohif/extension-vtk@0.52.21) (2019-10-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.20](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.19...@ohif/extension-vtk@0.52.20) (2019-10-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.19](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.18...@ohif/extension-vtk@0.52.19) (2019-10-25)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.18](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.17...@ohif/extension-vtk@0.52.18) (2019-10-25)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Orthographic MPR fix ([#1092](https://github.com/OHIF/Viewers/issues/1092)) ([460e375](https://github.com/OHIF/Viewers/commit/460e375f0aa75d35f7a46b4d48e6cc706019956d))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.17](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.16...@ohif/extension-vtk@0.52.17) (2019-10-25)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Fix crosshairs location when using MIP ([#1080](https://github.com/OHIF/Viewers/issues/1080)) ([b451ce4](https://github.com/OHIF/Viewers/commit/b451ce440796f13b0891739d2130e8ee71993d3d))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.16](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.15...@ohif/extension-vtk@0.52.16) (2019-10-23)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Switch to orhtographic view for 2D MPR ([#1074](https://github.com/OHIF/Viewers/issues/1074)) ([13d337a](https://github.com/OHIF/Viewers/commit/13d337aaabb8dadf6366c6262c5e47e7781edd08))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.15](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.14...@ohif/extension-vtk@0.52.15) (2019-10-23)
|
||||
|
||||
|
||||
### Performance Improvements
|
||||
|
||||
* ⚡️ Throttle UI refresh of synced WL value in vtk port ([#1070](https://github.com/OHIF/Viewers/issues/1070)) ([9d08e81](https://github.com/OHIF/Viewers/commit/9d08e81aa5def63a5e34f464aae099f7c29f0ac5))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.14](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.13...@ohif/extension-vtk@0.52.14) (2019-10-22)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.13](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.12...@ohif/extension-vtk@0.52.13) (2019-10-18)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.12](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.11...@ohif/extension-vtk@0.52.12) (2019-10-18)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.11](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.10...@ohif/extension-vtk@0.52.11) (2019-10-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.10](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.9...@ohif/extension-vtk@0.52.10) (2019-10-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.9](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.8...@ohif/extension-vtk@0.52.9) (2019-10-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.52.8](https://github.com/OHIF/Viewers/compare/@ohif/extension-vtk@0.52.7...@ohif/extension-vtk@0.52.8) (2019-10-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-vtk
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/extension-vtk",
|
||||
"version": "0.52.8",
|
||||
"version": "0.53.11",
|
||||
"description": "OHIF extension for VTK.js",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
@@ -48,11 +48,12 @@
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"react-vtkjs-viewport": "^0.1.6"
|
||||
"lodash.throttle": "^4.1.1",
|
||||
"react-vtkjs-viewport": "^0.3.9"
|
||||
},
|
||||
"devDependencies": {
|
||||
"@ohif/core": "^1.3.2",
|
||||
"@ohif/ui": "^0.53.4",
|
||||
"@ohif/core": "^1.12.0",
|
||||
"@ohif/ui": "^0.64.0",
|
||||
"cornerstone-tools": "^4.0.9",
|
||||
"cornerstone-wado-image-loader": "^3.0.0",
|
||||
"dcmjs": "^0.6.1",
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
import OHIF from "@ohif/core";
|
||||
import { View2D } from "react-vtkjs-viewport";
|
||||
import { connect } from "react-redux";
|
||||
import OHIF from '@ohif/core';
|
||||
import { View2D } from 'react-vtkjs-viewport';
|
||||
import { connect } from 'react-redux';
|
||||
|
||||
const { setViewportActive, setViewportSpecificData } = OHIF.redux.actions;
|
||||
|
||||
@@ -24,7 +24,7 @@ const mapStateToProps = (state, ownProps) => {
|
||||
// Hopefully this doesn't break anything under the hood for this one
|
||||
// activeTool: activeButton && activeButton.command,
|
||||
...dataFromStore,
|
||||
enableStackPrefetch: isActive
|
||||
enableStackPrefetch: isActive,
|
||||
};
|
||||
};
|
||||
|
||||
@@ -38,7 +38,7 @@ const mapDispatchToProps = (dispatch, ownProps) => {
|
||||
|
||||
setViewportSpecificData: data => {
|
||||
dispatch(setViewportSpecificData(viewportIndex, data));
|
||||
}
|
||||
},
|
||||
};
|
||||
};
|
||||
|
||||
@@ -63,10 +63,10 @@ const mergeProps = (propsFromState, propsFromDispatch, ownProps) => {
|
||||
// Store the API details for later
|
||||
//setViewportSpecificData({ vtkApi: api });
|
||||
|
||||
if (afterCreation && typeof afterCreation === "function") {
|
||||
if (afterCreation && typeof afterCreation === 'function') {
|
||||
afterCreation(api);
|
||||
}
|
||||
}
|
||||
},
|
||||
};
|
||||
return props;
|
||||
};
|
||||
|
||||
@@ -3,15 +3,15 @@
|
||||
}
|
||||
|
||||
.loadingIndicator {
|
||||
background-color: rgba(0, 0, 0, 0.75);
|
||||
font-size: 18px;
|
||||
height: 100%;
|
||||
background-color: rgba(0, 0, 0, 0);
|
||||
font-size: 8px;
|
||||
height: 20%;
|
||||
overflow: hidden;
|
||||
position: absolute;
|
||||
top: 0;
|
||||
width: 100%;
|
||||
z-index: 1;
|
||||
|
||||
/* Necessary for click-through to cornerstone element below */
|
||||
/* Necessary for click-through to vtkjs element below */
|
||||
pointer-events: none;
|
||||
}
|
||||
@@ -1,7 +1,7 @@
|
||||
import './LoadingIndicator.css';
|
||||
|
||||
import React, { PureComponent } from 'react';
|
||||
|
||||
import { withTranslation } from 'react-i18next';
|
||||
import PropTypes from 'prop-types';
|
||||
|
||||
class LoadingIndicator extends PureComponent {
|
||||
@@ -35,7 +35,8 @@ class LoadingIndicator extends PureComponent {
|
||||
<div className="imageViewerLoadingIndicator loadingIndicator">
|
||||
<div className="indicatorContents">
|
||||
<p>
|
||||
Loading... <i className="fa fa-spin fa-circle-o-notch fa-fw" />{' '}
|
||||
{this.props.t('Reformatting')}...
|
||||
<i className="fa fa-spin fa-circle-o-notch fa-fw" />
|
||||
{percComplete}
|
||||
</p>
|
||||
</div>
|
||||
@@ -46,4 +47,4 @@ class LoadingIndicator extends PureComponent {
|
||||
}
|
||||
}
|
||||
|
||||
export default LoadingIndicator;
|
||||
export default withTranslation('Common')(LoadingIndicator);
|
||||
@@ -11,7 +11,6 @@ import vtkDataArray from 'vtk.js/Sources/Common/Core/DataArray';
|
||||
import vtkImageData from 'vtk.js/Sources/Common/DataModel/ImageData';
|
||||
import vtkVolume from 'vtk.js/Sources/Rendering/Core/Volume';
|
||||
import vtkVolumeMapper from 'vtk.js/Sources/Rendering/Core/VolumeMapper';
|
||||
import vtkViewportSubscriptionManager from './utils/vtkViewportSubscriptionManager.js';
|
||||
|
||||
const { StackManager } = OHIF.utils;
|
||||
|
||||
@@ -66,8 +65,16 @@ class OHIFVTKViewport extends Component {
|
||||
};
|
||||
|
||||
static propTypes = {
|
||||
studies: PropTypes.object,
|
||||
displaySet: PropTypes.object,
|
||||
viewportData: PropTypes.shape({
|
||||
studies: PropTypes.array,
|
||||
displaySet: PropTypes.shape({
|
||||
studyInstanceUid: PropTypes.string,
|
||||
displaySetInstanceUid: PropTypes.string,
|
||||
sopClassUids: PropTypes.arrayOf(PropTypes.string),
|
||||
sopInstanceUid: PropTypes.string,
|
||||
frameIndex: PropTypes.number,
|
||||
}),
|
||||
}),
|
||||
viewportIndex: PropTypes.number,
|
||||
children: PropTypes.node,
|
||||
};
|
||||
@@ -172,56 +179,64 @@ class OHIFVTKViewport extends Component {
|
||||
default:
|
||||
imageDataObject = getImageData(stack.imageIds, displaySetInstanceUid);
|
||||
|
||||
const loadImageDataPromise = loadImageData(imageDataObject);
|
||||
|
||||
return loadImageDataPromise.then(() => {
|
||||
return {
|
||||
data: imageDataObject.vtkImageData,
|
||||
};
|
||||
});
|
||||
return imageDataObject;
|
||||
}
|
||||
};
|
||||
|
||||
getOrCreateVolume(data, displaySetInstanceUid) {
|
||||
/**
|
||||
*
|
||||
*
|
||||
* @param {object} imageDataObject
|
||||
* @param {object} imageDataObject.vtkImageData
|
||||
* @param {object} imageDataObject.imageMetaData0
|
||||
* @param {number} [imageDataObject.imageMetaData0.windowWidth] - The volume's initial windowWidth
|
||||
* @param {number} [imageDataObject.imageMetaData0.windowCenter] - The volume's initial windowCenter
|
||||
* @param {string} imageDataObject.imageMetaData0.modality - CT, MR, PT, etc
|
||||
* @param {string} displaySetInstanceUid
|
||||
* @returns vtkVolumeActor
|
||||
* @memberof OHIFVTKViewport
|
||||
*/
|
||||
getOrCreateVolume(imageDataObject, displaySetInstanceUid) {
|
||||
if (volumeCache[displaySetInstanceUid]) {
|
||||
return volumeCache[displaySetInstanceUid];
|
||||
}
|
||||
|
||||
const { vtkImageData, imageMetaData0 } = imageDataObject;
|
||||
const { windowWidth, windowCenter, modality } = imageMetaData0;
|
||||
|
||||
const { lower, upper } = _getRangeFromWindowLevels(
|
||||
windowWidth,
|
||||
windowCenter,
|
||||
modality
|
||||
);
|
||||
const volumeActor = vtkVolume.newInstance();
|
||||
const volumeMapper = vtkVolumeMapper.newInstance();
|
||||
|
||||
volumeActor.setMapper(volumeMapper);
|
||||
volumeMapper.setInputData(data);
|
||||
volumeMapper.setInputData(vtkImageData);
|
||||
|
||||
const range = data
|
||||
.getPointData()
|
||||
.getScalars()
|
||||
.getRange();
|
||||
|
||||
// TODO: For PET we might want to just set this to 0-5 SUV
|
||||
volumeActor
|
||||
.getProperty()
|
||||
.getRGBTransferFunction(0)
|
||||
.setRange(range[0], range[1]);
|
||||
.setRange(lower, upper);
|
||||
|
||||
// TODO: Should look into implementing autoAdjustSampleDistance in vtk
|
||||
const sampleDistance =
|
||||
1.2 *
|
||||
Math.sqrt(
|
||||
data
|
||||
.getSpacing()
|
||||
.map(v => v * v)
|
||||
.reduce((a, b) => a + b, 0)
|
||||
);
|
||||
const spacing = vtkImageData.getSpacing();
|
||||
// Set the sample distance to half the mean length of one side. This is where the divide by 6 comes from.
|
||||
// https://github.com/Kitware/VTK/blob/6b559c65bb90614fb02eb6d1b9e3f0fca3fe4b0b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.cxx#L344
|
||||
const sampleDistance = (spacing[0] + spacing[1] + spacing[2]) / 6;
|
||||
|
||||
volumeMapper.setSampleDistance(sampleDistance);
|
||||
|
||||
// Be generous to surpress warnings, as the logging really hurts performance.
|
||||
// TODO: maybe we should auto adjust samples to 1000.
|
||||
volumeMapper.setMaximumSamplesPerRay(4000);
|
||||
|
||||
volumeCache[displaySetInstanceUid] = volumeActor;
|
||||
|
||||
return volumeActor;
|
||||
}
|
||||
|
||||
async setStateFromProps() {
|
||||
setStateFromProps() {
|
||||
const { studies, displaySet } = this.props.viewportData;
|
||||
const {
|
||||
studyInstanceUid,
|
||||
@@ -238,8 +253,7 @@ class OHIFVTKViewport extends Component {
|
||||
}
|
||||
|
||||
const sopClassUid = sopClassUids[0];
|
||||
|
||||
let { data, labelmap } = await this.getViewportData(
|
||||
const imageDataObject = this.getViewportData(
|
||||
studies,
|
||||
studyInstanceUid,
|
||||
displaySetInstanceUid,
|
||||
@@ -248,29 +262,51 @@ class OHIFVTKViewport extends Component {
|
||||
frameIndex
|
||||
);
|
||||
|
||||
this.imageDataObject = imageDataObject;
|
||||
|
||||
// TODO: Temporarily disabling this since it is not yet
|
||||
// being used and hurts performance significantly.
|
||||
/*if (!labelmap) {
|
||||
labelmap = createLabelMapImageData(data);
|
||||
}*/
|
||||
|
||||
const volumeActor = this.getOrCreateVolume(data, displaySetInstanceUid);
|
||||
const volumeActor = this.getOrCreateVolume(
|
||||
imageDataObject,
|
||||
displaySetInstanceUid
|
||||
);
|
||||
|
||||
this.setState({
|
||||
volumes: [volumeActor],
|
||||
paintFilterBackgroundImageData: data,
|
||||
paintFilterLabelMapImageData: labelmap,
|
||||
paintFilterBackgroundImageData: imageDataObject.vtkImageData,
|
||||
paintFilterLabelMapImageData: null, // TODO
|
||||
percentComplete: 0,
|
||||
});
|
||||
|
||||
this.setState(
|
||||
{
|
||||
paintFilterBackgroundImageData: imageDataObject.vtkImageData,
|
||||
paintFilterLabelMapImageData: null, // TODO
|
||||
percentComplete: 0,
|
||||
},
|
||||
() => {
|
||||
this.loadProgressively(imageDataObject);
|
||||
|
||||
// TODO: There must be a better way to do this.
|
||||
// We do this so that if all the data is available the react-vtkjs-viewport
|
||||
// Will render _something_ before the volumes are set and the volume
|
||||
// Construction that happens in react-vtkjs-viewport locks up the CPU.
|
||||
setTimeout(() => {
|
||||
this.setState({
|
||||
volumes: [volumeActor],
|
||||
});
|
||||
}, 200);
|
||||
}
|
||||
);
|
||||
}
|
||||
|
||||
componentDidMount() {
|
||||
this.setStateFromProps();
|
||||
}
|
||||
|
||||
componentWillUnmount() {
|
||||
vtkViewportSubscriptionManager.unsubscribe(this.props.viewportIndex);
|
||||
}
|
||||
|
||||
componentDidUpdate(prevProps) {
|
||||
const { studies, displaySet } = this.props.viewportData;
|
||||
const prevDisplaySet = prevProps.viewportData.displaySet;
|
||||
@@ -285,6 +321,37 @@ class OHIFVTKViewport extends Component {
|
||||
}
|
||||
}
|
||||
|
||||
loadProgressively(imageDataObject) {
|
||||
loadImageData(imageDataObject);
|
||||
|
||||
const { isLoading, insertPixelDataPromises } = imageDataObject;
|
||||
|
||||
const numberOfFrames = insertPixelDataPromises.length;
|
||||
|
||||
if (!isLoading) {
|
||||
this.setState({ isLoaded: true });
|
||||
return;
|
||||
}
|
||||
|
||||
insertPixelDataPromises.forEach(promise => {
|
||||
promise.then(numberProcessed => {
|
||||
const percentComplete = Math.floor(
|
||||
(numberProcessed * 100) / numberOfFrames
|
||||
);
|
||||
|
||||
if (percentComplete !== this.state.percentComplete) {
|
||||
this.setState({
|
||||
percentComplete,
|
||||
});
|
||||
}
|
||||
});
|
||||
});
|
||||
|
||||
Promise.all(insertPixelDataPromises).then(() => {
|
||||
this.setState({ isLoaded: true });
|
||||
});
|
||||
}
|
||||
|
||||
render() {
|
||||
let childrenWithProps = null;
|
||||
|
||||
@@ -302,21 +369,23 @@ class OHIFVTKViewport extends Component {
|
||||
|
||||
return (
|
||||
<>
|
||||
{this.state.volumes ? (
|
||||
<ConnectedVTKViewport
|
||||
volumes={this.state.volumes}
|
||||
paintFilterLabelMapImageData={
|
||||
this.state.paintFilterLabelMapImageData
|
||||
}
|
||||
paintFilterBackgroundImageData={
|
||||
this.state.paintFilterBackgroundImageData
|
||||
}
|
||||
viewportIndex={this.props.viewportIndex}
|
||||
/>
|
||||
) : (
|
||||
<div style={style}>
|
||||
<LoadingIndicator />
|
||||
</div>
|
||||
<div style={style}>
|
||||
{!this.state.isLoaded && (
|
||||
<LoadingIndicator percentComplete={this.state.percentComplete} />
|
||||
)}
|
||||
{this.state.volumes && (
|
||||
<ConnectedVTKViewport
|
||||
volumes={this.state.volumes}
|
||||
paintFilterLabelMapImageData={
|
||||
this.state.paintFilterLabelMapImageData
|
||||
}
|
||||
paintFilterBackgroundImageData={
|
||||
this.state.paintFilterBackgroundImageData
|
||||
}
|
||||
viewportIndex={this.props.viewportIndex}
|
||||
/>
|
||||
)}
|
||||
</div>
|
||||
)}
|
||||
{childrenWithProps}
|
||||
</>
|
||||
@@ -324,4 +393,32 @@ class OHIFVTKViewport extends Component {
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Takes window levels and converts them to a range (lower/upper)
|
||||
* for use with VTK RGBTransferFunction
|
||||
*
|
||||
* @private
|
||||
* @param {number} [width] - the width of our window
|
||||
* @param {number} [center] - the center of our window
|
||||
* @param {string} [modality] - 'PT', 'CT', etc.
|
||||
* @returns { lower, upper } - range
|
||||
*/
|
||||
function _getRangeFromWindowLevels(width, center, modality = undefined) {
|
||||
const levelsAreNotNumbers = isNaN(center) || isNaN(width);
|
||||
|
||||
if (levelsAreNotNumbers) {
|
||||
return { lower: 0, upper: 512 };
|
||||
}
|
||||
|
||||
// For PET just set the range to 0-5 SUV
|
||||
if (modality === 'PT') {
|
||||
return { lower: 0, upper: 5 };
|
||||
}
|
||||
|
||||
return {
|
||||
lower: center - width / 2.0,
|
||||
upper: center + width / 2.0,
|
||||
};
|
||||
}
|
||||
|
||||
export default OHIFVTKViewport;
|
||||
@@ -1,69 +1,19 @@
|
||||
import {
|
||||
vtkInteractorStyleMPRCrosshairs,
|
||||
vtkInteractorStyleMPRWindowLevel,
|
||||
vtkInteractorStyleMPRSlice,
|
||||
vtkInteractorStyleMPRRotate,
|
||||
vtkSVGCrosshairsWidget,
|
||||
vtkSVGWidgetManager,
|
||||
} from 'react-vtkjs-viewport';
|
||||
|
||||
import setMPRLayout from './utils/setMPRLayout.js';
|
||||
import setViewportToVTK from './utils/setViewportToVTK.js';
|
||||
import vtkViewportSubscriptionManager from './utils/vtkViewportSubscriptionManager.js';
|
||||
import vtkCoordinate from 'vtk.js/Sources/Rendering/Core/Coordinate';
|
||||
import vtkMath from 'vtk.js/Sources/Common/Core/Math';
|
||||
import vtkMatrixBuilder from 'vtk.js/Sources/Common/Core/MatrixBuilder';
|
||||
import Constants from 'vtk.js/Sources/Rendering/Core/VolumeMapper/Constants.js';
|
||||
import throttle from 'lodash.throttle';
|
||||
|
||||
const { BlendMode } = Constants;
|
||||
|
||||
// TODO: Put this somewhere else
|
||||
let apis = {};
|
||||
let currentSlabThickness = 0.1;
|
||||
let defaultSlabThickness = 0.1;
|
||||
|
||||
function getCrosshairCallbackForIndex(index) {
|
||||
return ({ worldPos }) => {
|
||||
// Set camera focal point to world coordinate for linked views
|
||||
apis.forEach((api, viewportIndex) => {
|
||||
if (viewportIndex !== index) {
|
||||
// We are basically doing the same as getSlice but with the world coordinate
|
||||
// that we want to jump to instead of the camera focal point.
|
||||
// I would rather do the camera adjustment directly but I keep
|
||||
// doing it wrong and so this is good enough for now.
|
||||
const renderWindow = api.genericRenderWindow.getRenderWindow();
|
||||
|
||||
const istyle = renderWindow.getInteractor().getInteractorStyle();
|
||||
const sliceNormal = istyle.getSliceNormal();
|
||||
const transform = vtkMatrixBuilder
|
||||
.buildFromDegree()
|
||||
.identity()
|
||||
.rotateFromDirections(sliceNormal, [1, 0, 0]);
|
||||
|
||||
const mutatedWorldPos = worldPos.slice();
|
||||
transform.apply(mutatedWorldPos);
|
||||
const slice = mutatedWorldPos[0];
|
||||
|
||||
istyle.setSlice(slice);
|
||||
|
||||
renderWindow.render();
|
||||
}
|
||||
|
||||
const renderer = api.genericRenderWindow.getRenderer();
|
||||
const wPos = vtkCoordinate.newInstance();
|
||||
wPos.setCoordinateSystemToWorld();
|
||||
wPos.setValue(worldPos);
|
||||
|
||||
const displayPosition = wPos.getComputedDisplayValue(renderer);
|
||||
const { svgWidgetManager } = api;
|
||||
api.svgWidgets.crosshairsWidget.setPoint(
|
||||
displayPosition[0],
|
||||
displayPosition[1]
|
||||
);
|
||||
svgWidgetManager.render();
|
||||
});
|
||||
};
|
||||
}
|
||||
|
||||
async function _getActiveViewportVTKApi(viewports) {
|
||||
const {
|
||||
@@ -105,8 +55,6 @@ async function _getActiveViewportVTKApi(viewports) {
|
||||
|
||||
function _setView(api, sliceNormal, viewUp) {
|
||||
const renderWindow = api.genericRenderWindow.getRenderWindow();
|
||||
const renderer = api.genericRenderWindow.getRenderer();
|
||||
const camera = renderer.getActiveCamera();
|
||||
const istyle = renderWindow.getInteractor().getInteractorStyle();
|
||||
istyle.setSliceNormal(...sliceNormal);
|
||||
istyle.setViewUp(...viewUp);
|
||||
@@ -114,41 +62,6 @@ function _setView(api, sliceNormal, viewUp) {
|
||||
renderWindow.render();
|
||||
}
|
||||
|
||||
function switchMPRInteractors(api, istyle) {
|
||||
const renderWindow = api.genericRenderWindow.getRenderWindow();
|
||||
const renderer = api.genericRenderWindow.getRenderer();
|
||||
const camera = renderer.getActiveCamera();
|
||||
const currentIStyle = renderWindow.getInteractor().getInteractorStyle();
|
||||
|
||||
let currentViewport;
|
||||
if (currentIStyle.getViewport && istyle.getViewport) {
|
||||
currentViewport = currentIStyle.getViewport();
|
||||
}
|
||||
|
||||
let currentSlabThickness;
|
||||
if (currentIStyle.getSlabThickness && istyle.getSlabThickness) {
|
||||
currentSlabThickness = currentIStyle.getSlabThickness();
|
||||
defaultSlabThickness = currentSlabThickness;
|
||||
}
|
||||
|
||||
renderWindow.getInteractor().setInteractorStyle(istyle);
|
||||
|
||||
// TODO: Not sure why this is required the second time this function is called
|
||||
istyle.setInteractor(renderWindow.getInteractor());
|
||||
|
||||
if (currentViewport) {
|
||||
istyle.setViewport(currentViewport);
|
||||
}
|
||||
|
||||
if (istyle.getVolumeMapper() !== api.volumes[0]) {
|
||||
if (currentSlabThickness) {
|
||||
istyle.setSlabThickness(currentSlabThickness);
|
||||
}
|
||||
|
||||
istyle.setVolumeMapper(api.volumes[0]);
|
||||
}
|
||||
}
|
||||
|
||||
const actions = {
|
||||
axial: async ({ viewports }) => {
|
||||
const api = await _getActiveViewportVTKApi(viewports);
|
||||
@@ -175,52 +88,56 @@ const actions = {
|
||||
apis.forEach(api => {
|
||||
const istyle = vtkInteractorStyleMPRRotate.newInstance();
|
||||
|
||||
switchMPRInteractors(api, istyle);
|
||||
api.setInteractorStyle({ istyle });
|
||||
});
|
||||
},
|
||||
enableCrosshairsTool: () => {
|
||||
apis.forEach((api, index) => {
|
||||
apis.forEach((api, apiIndex) => {
|
||||
const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
|
||||
|
||||
switchMPRInteractors(api, istyle);
|
||||
|
||||
istyle.setCallback(getCrosshairCallbackForIndex(index));
|
||||
api.setInteractorStyle({
|
||||
istyle,
|
||||
configuration: { apis, apiIndex },
|
||||
});
|
||||
});
|
||||
},
|
||||
enableLevelTool: () => {
|
||||
function updateVOI(apis, windowWidth, windowCenter) {
|
||||
apis.forEach(api => {
|
||||
api.updateVOI(windowWidth, windowCenter);
|
||||
});
|
||||
}
|
||||
|
||||
const throttledUpdateVOIs = throttle(updateVOI, 16, { trailing: true }); // ~ 60 fps
|
||||
|
||||
const callbacks = {
|
||||
setOnLevelsChanged: ({ windowCenter, windowWidth }) => {
|
||||
apis.forEach(api => {
|
||||
const renderWindow = api.genericRenderWindow.getRenderWindow();
|
||||
|
||||
renderWindow.render();
|
||||
});
|
||||
|
||||
throttledUpdateVOIs(apis, windowWidth, windowCenter);
|
||||
},
|
||||
};
|
||||
|
||||
apis.forEach(api => {
|
||||
const istyle = vtkInteractorStyleMPRWindowLevel.newInstance();
|
||||
|
||||
switchMPRInteractors(api, istyle);
|
||||
api.setInteractorStyle({ istyle, callbacks });
|
||||
});
|
||||
},
|
||||
setSlabThickness: ({ slabThickness }) => {
|
||||
currentSlabThickness = slabThickness;
|
||||
|
||||
apis.forEach(api => {
|
||||
const renderWindow = api.genericRenderWindow.getRenderWindow();
|
||||
const istyle = renderWindow.getInteractor().getInteractorStyle();
|
||||
|
||||
if (istyle.setSlabThickness) {
|
||||
istyle.setSlabThickness(currentSlabThickness);
|
||||
}
|
||||
|
||||
renderWindow.render();
|
||||
api.setSlabThickness(slabThickness);
|
||||
});
|
||||
},
|
||||
changeSlabThickness: ({ change }) => {
|
||||
currentSlabThickness += change;
|
||||
currentSlabThickness = Math.max(currentSlabThickness, 0.1);
|
||||
|
||||
apis.forEach(api => {
|
||||
const renderWindow = api.genericRenderWindow.getRenderWindow();
|
||||
const istyle = renderWindow.getInteractor().getInteractorStyle();
|
||||
const slabThickness = Math.max(api.getSlabThickness() + change, 0.1);
|
||||
|
||||
if (istyle.setSlabThickness) {
|
||||
istyle.setSlabThickness(currentSlabThickness);
|
||||
}
|
||||
|
||||
renderWindow.render();
|
||||
api.setSlabThickness(slabThickness);
|
||||
});
|
||||
},
|
||||
setBlendModeToComposite: () => {
|
||||
@@ -228,13 +145,15 @@ const actions = {
|
||||
const renderWindow = api.genericRenderWindow.getRenderWindow();
|
||||
const istyle = renderWindow.getInteractor().getInteractorStyle();
|
||||
|
||||
const slabThickness = api.getSlabThickness();
|
||||
|
||||
const mapper = api.volumes[0].getMapper();
|
||||
if (mapper.setBlendModeToComposite) {
|
||||
mapper.setBlendModeToComposite();
|
||||
}
|
||||
|
||||
if (istyle.setSlabThickness) {
|
||||
istyle.setSlabThickness(defaultSlabThickness);
|
||||
istyle.setSlabThickness(slabThickness);
|
||||
}
|
||||
renderWindow.render();
|
||||
});
|
||||
@@ -252,7 +171,6 @@ const actions = {
|
||||
setBlendMode: ({ blendMode }) => {
|
||||
apis.forEach(api => {
|
||||
const renderWindow = api.genericRenderWindow.getRenderWindow();
|
||||
const istyle = renderWindow.getInteractor().getInteractorStyle();
|
||||
|
||||
api.volumes[0].getMapper().setBlendMode(blendMode);
|
||||
|
||||
@@ -260,78 +178,60 @@ const actions = {
|
||||
});
|
||||
},
|
||||
mpr2d: async ({ viewports }) => {
|
||||
// TODO push a lot of this backdoor logic lower down to the library level.
|
||||
const displaySet =
|
||||
viewports.viewportSpecificData[viewports.activeViewportIndex];
|
||||
|
||||
let apiByViewport;
|
||||
// Get current VOI if cornerstone viewport.
|
||||
const cornerstoneVOI = getVOIFromCornerstoneViewport(displaySet);
|
||||
|
||||
const viewportProps = [
|
||||
{
|
||||
//Axial
|
||||
orientation: {
|
||||
sliceNormal: [0, 0, 1],
|
||||
viewUp: [0, -1, 0],
|
||||
},
|
||||
},
|
||||
{
|
||||
// Sagital
|
||||
orientation: {
|
||||
sliceNormal: [1, 0, 0],
|
||||
viewUp: [0, 0, 1],
|
||||
},
|
||||
},
|
||||
{
|
||||
// Coronal
|
||||
orientation: {
|
||||
sliceNormal: [0, 1, 0],
|
||||
viewUp: [0, 0, 1],
|
||||
},
|
||||
},
|
||||
];
|
||||
|
||||
try {
|
||||
apiByViewport = await setMPRLayout(displaySet);
|
||||
apis = await setMPRLayout(displaySet, viewportProps, 1, 3);
|
||||
} catch (error) {
|
||||
throw new Error(error);
|
||||
}
|
||||
|
||||
apis = apiByViewport;
|
||||
if (cornerstoneVOI) {
|
||||
setVOI(cornerstoneVOI);
|
||||
}
|
||||
|
||||
const rgbTransferFunction = apiByViewport[0].volumes[0]
|
||||
.getProperty()
|
||||
.getRGBTransferFunction(0);
|
||||
|
||||
const onModifiedSubscription = rgbTransferFunction.onModified(() => {
|
||||
apiByViewport.forEach(a => {
|
||||
const renderWindow = a.genericRenderWindow.getRenderWindow();
|
||||
|
||||
renderWindow.render();
|
||||
});
|
||||
});
|
||||
|
||||
vtkViewportSubscriptionManager.pushSubscription(0, onModifiedSubscription);
|
||||
|
||||
apiByViewport.forEach((api, index) => {
|
||||
const renderWindow = api.genericRenderWindow.getRenderWindow();
|
||||
const renderer = api.genericRenderWindow.getRenderer();
|
||||
const camera = renderer.getActiveCamera();
|
||||
// Add widgets and set default interactorStyle of each viewport.
|
||||
apis.forEach((api, apiIndex) => {
|
||||
api.addSVGWidget(
|
||||
vtkSVGCrosshairsWidget.newInstance(),
|
||||
'crosshairsWidget'
|
||||
);
|
||||
|
||||
const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
|
||||
renderWindow.getInteractor().setInteractorStyle(istyle);
|
||||
|
||||
istyle.setVolumeMapper(api.volumes[0]);
|
||||
istyle.setCallback(getCrosshairCallbackForIndex(index));
|
||||
|
||||
const svgWidgetManager = vtkSVGWidgetManager.newInstance();
|
||||
svgWidgetManager.setRenderer(renderer);
|
||||
svgWidgetManager.setScale(1);
|
||||
|
||||
const crosshairsWidget = vtkSVGCrosshairsWidget.newInstance();
|
||||
|
||||
svgWidgetManager.addWidget(crosshairsWidget);
|
||||
svgWidgetManager.render();
|
||||
|
||||
api.svgWidgetManager = svgWidgetManager;
|
||||
api.svgWidgets = {
|
||||
crosshairsWidget,
|
||||
};
|
||||
|
||||
switch (index) {
|
||||
default:
|
||||
case 0:
|
||||
//Axial
|
||||
istyle.setSliceNormal(0, 0, 1);
|
||||
istyle.setViewUp(0, -1, 0);
|
||||
|
||||
break;
|
||||
case 1:
|
||||
// sagittal
|
||||
istyle.setSliceNormal(1, 0, 0);
|
||||
istyle.setViewUp(0, 0, 1);
|
||||
break;
|
||||
case 2:
|
||||
// Coronal
|
||||
istyle.setSliceNormal(0, 1, 0);
|
||||
istyle.setViewUp(0, 0, 1);
|
||||
break;
|
||||
}
|
||||
|
||||
renderWindow.render();
|
||||
api.setInteractorStyle({
|
||||
istyle,
|
||||
configuration: { apis, apiIndex },
|
||||
});
|
||||
});
|
||||
},
|
||||
};
|
||||
@@ -421,3 +321,41 @@ export default {
|
||||
definitions,
|
||||
defaultContext: 'ACTIVE_VIEWPORT::VTK',
|
||||
};
|
||||
|
||||
function getVOIFromCornerstoneViewport(displaySet) {
|
||||
const cornerstoneElement = cornerstone.getEnabledElement(displaySet.dom);
|
||||
|
||||
if (cornerstoneElement) {
|
||||
const imageId = cornerstoneElement.image.imageId;
|
||||
|
||||
const { modality } = cornerstone.metaData.get(
|
||||
'generalSeriesModule',
|
||||
imageId
|
||||
);
|
||||
|
||||
if (modality !== 'PT') {
|
||||
const { windowWidth, windowCenter } = cornerstoneElement.viewport.voi;
|
||||
|
||||
return {
|
||||
windowWidth,
|
||||
windowCenter,
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
function setVOI(voi) {
|
||||
const { windowWidth, windowCenter } = voi;
|
||||
const lower = windowCenter - windowWidth / 2.0;
|
||||
const upper = windowCenter + windowWidth / 2.0;
|
||||
|
||||
const rgbTransferFunction = apis[0].volumes[0]
|
||||
.getProperty()
|
||||
.getRGBTransferFunction(0);
|
||||
|
||||
rgbTransferFunction.setRange(lower, upper);
|
||||
|
||||
apis.forEach(api => {
|
||||
api.updateVOI(windowWidth, windowCenter);
|
||||
});
|
||||
}
|
||||
@@ -1,7 +1,7 @@
|
||||
import React, { useState, useEffect } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import classnames from 'classnames';
|
||||
import { Range, Checkbox, Select } from '@ohif/ui';
|
||||
import { Range, Checkbox, OldSelect } from '@ohif/ui';
|
||||
|
||||
import './slab-thickness-toolbar-button.styl';
|
||||
|
||||
@@ -16,6 +16,10 @@ const ToolbarLabel = props => {
|
||||
return <div className="toolbar-button-label">{label}</div>;
|
||||
};
|
||||
|
||||
ToolbarLabel.propTypes = {
|
||||
label: PropTypes.string.isRequired,
|
||||
};
|
||||
|
||||
const ToolbarSlider = props => {
|
||||
const { value, min, max, onChange } = props;
|
||||
return (
|
||||
@@ -33,6 +37,13 @@ const ToolbarSlider = props => {
|
||||
);
|
||||
};
|
||||
|
||||
ToolbarSlider.propTypes = {
|
||||
value: PropTypes.number.isRequired,
|
||||
min: PropTypes.number.isRequired,
|
||||
max: PropTypes.number.isRequired,
|
||||
onChange: PropTypes.func.isRequired,
|
||||
};
|
||||
|
||||
const _getSelectOptions = button => {
|
||||
return button.operationButtons.map(button => {
|
||||
return {
|
||||
@@ -184,12 +195,12 @@ function SlabThicknessToolbarComponent({
|
||||
checked={state.modeChecked}
|
||||
onChange={onChangeCheckbox}
|
||||
></Checkbox>
|
||||
<Select
|
||||
<OldSelect
|
||||
key="toolbar-select"
|
||||
options={selectOptions}
|
||||
value={selectOptions[INITIAL_OPTION_INDEX].value}
|
||||
onChange={onChangeSelect}
|
||||
></Select>
|
||||
></OldSelect>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
|
||||
@@ -1,11 +1,23 @@
|
||||
import setLayoutAndViewportData from './setLayoutAndViewportData.js';
|
||||
|
||||
export default function setMPRLayout(displaySet) {
|
||||
export default function setMPRLayout(
|
||||
displaySet,
|
||||
viewportPropsArray,
|
||||
numRows = 1,
|
||||
numColumns = 1
|
||||
) {
|
||||
return new Promise((resolve, reject) => {
|
||||
const viewports = [];
|
||||
const numRows = 1;
|
||||
const numColumns = 3;
|
||||
const numViewports = numRows * numColumns;
|
||||
|
||||
if (viewportPropsArray && viewportPropsArray.length !== numViewports) {
|
||||
reject(
|
||||
new Error(
|
||||
'viewportProps is supplied but its length is not equal to numViewports'
|
||||
)
|
||||
);
|
||||
}
|
||||
|
||||
const viewportSpecificData = {};
|
||||
|
||||
for (let i = 0; i < numViewports; i++) {
|
||||
@@ -17,8 +29,8 @@ export default function setMPRLayout(displaySet) {
|
||||
const apis = [];
|
||||
viewports.forEach((viewport, index) => {
|
||||
apis[index] = null;
|
||||
const viewportProps = viewportPropsArray[index];
|
||||
viewports[index] = Object.assign({}, viewports[index], {
|
||||
// plugin: 'vtk',
|
||||
vtk: {
|
||||
mode: 'mpr', // TODO: not used
|
||||
afterCreation: api => {
|
||||
@@ -28,6 +40,7 @@ export default function setMPRLayout(displaySet) {
|
||||
resolve(apis);
|
||||
}
|
||||
},
|
||||
...viewportProps,
|
||||
},
|
||||
});
|
||||
});
|
||||
|
||||
@@ -1,28 +0,0 @@
|
||||
const subscriptions = [];
|
||||
|
||||
// This is pretty hacky right now, but it makes sure we don't keep adding subscriptions.
|
||||
// TODO -> Nuke this and move it up a layer once we have more vigorous layout support.
|
||||
|
||||
const vtkViewportSubscriptionManager = {
|
||||
subscriptions,
|
||||
pushSubscription(viewportIndex, subscription) {
|
||||
if (!Array.isArray(subscriptions[viewportIndex])) {
|
||||
subscriptions[viewportIndex] = [];
|
||||
}
|
||||
|
||||
subscriptions[viewportIndex].push(subscription);
|
||||
},
|
||||
unsubscribe(viewportIndex) {
|
||||
if (!subscriptions[viewportIndex]) {
|
||||
return;
|
||||
}
|
||||
|
||||
while (subscriptions[viewportIndex].length) {
|
||||
subscriptions[viewportIndex].pop().unsubscribe();
|
||||
}
|
||||
|
||||
subscriptions[viewportIndex] = null;
|
||||
},
|
||||
};
|
||||
|
||||
export default vtkViewportSubscriptionManager;
|
||||
+3
-14
@@ -8,15 +8,6 @@
|
||||
# managed by CircleCI and deployed to our Google Hosting
|
||||
#
|
||||
|
||||
# Settings in the [build] context are global and are applied to all contexts
|
||||
# unless otherwise overridden by more specific contexts.
|
||||
[build]
|
||||
# Directory to change to before starting a build.
|
||||
# This is where we will look for package.json/.nvmrc/etc.
|
||||
base = ""
|
||||
publish = "project/build-output/"
|
||||
|
||||
|
||||
# NODE_VERSION in root `.nvmrc` takes priority
|
||||
# YARN_FLAGS: https://www.netlify.com/docs/build-gotchas/#yarn
|
||||
[build.environment]
|
||||
@@ -28,17 +19,15 @@
|
||||
|
||||
# Production context: all deploys from the Production branch set in your site's
|
||||
# deploy contexts will inherit these settings.
|
||||
# [context.production]
|
||||
# publish = "project/output/"
|
||||
# command = "make publish"
|
||||
# environment = { ACCESS_TOKEN = "super secret", NODE_VERSION = "8.0.1" }
|
||||
[context.production]
|
||||
ignore = "exit 0" # Never build production; We'll let our CI do that
|
||||
|
||||
# Deploy Preview context: all deploys generated from a pull/merge request will
|
||||
# inherit these settings.
|
||||
[context.deploy-preview]
|
||||
base = ""
|
||||
publish = ".netlify/www/"
|
||||
command = "yarn config set workspaces-experimental true && chmod +x .netlify/build-deploy-preview.sh && .netlify/build-deploy-preview.sh"
|
||||
command = "chmod +x .netlify/build-deploy-preview.sh && .netlify/build-deploy-preview.sh"
|
||||
|
||||
[[headers]]
|
||||
# Define which paths this specific [[headers]] block will cover.
|
||||
|
||||
+7
-1
@@ -26,6 +26,7 @@
|
||||
"test:unit": "jest --collectCoverage",
|
||||
"test:unit:ci": "lerna run test:unit:ci --parallel --stream",
|
||||
"test:e2e": "lerna run test:e2e --stream",
|
||||
"test:e2e:ci": "lerna run test:e2e:ci --stream",
|
||||
"test:e2e:dist": "lerna run test:e2e:dist --stream",
|
||||
"test:e2e:serve": "lerna run test:e2e:serve --stream",
|
||||
"see-changed": "lerna changed",
|
||||
@@ -49,6 +50,7 @@
|
||||
"@babel/plugin-transform-runtime": "^7.5.0",
|
||||
"@babel/preset-env": "^7.5.0",
|
||||
"@babel/preset-react": "^7.0.0",
|
||||
"@percy/cypress": "^2.2.0",
|
||||
"babel-eslint": "9.x",
|
||||
"babel-loader": "^8.0.6",
|
||||
"babel-plugin-inline-react-svg": "1.1.0",
|
||||
@@ -57,16 +59,20 @@
|
||||
"copy-webpack-plugin": "^5.0.3",
|
||||
"cross-env": "^5.2.0",
|
||||
"css-loader": "^3.2.0",
|
||||
"dotenv": "^8.1.0",
|
||||
"eslint": "5.16.0",
|
||||
"eslint-config-prettier": "^6.4.0",
|
||||
"eslint-config-react-app": "^4.0.1",
|
||||
"eslint-plugin-flowtype": "2.x",
|
||||
"eslint-plugin-import": "2.x",
|
||||
"eslint-plugin-jsx-a11y": "6.x",
|
||||
"eslint-plugin-node": "^9.1.0",
|
||||
"eslint-plugin-prettier": "^3.1.1",
|
||||
"eslint-plugin-promise": "^4.2.1",
|
||||
"eslint-plugin-react": "7.x",
|
||||
"eslint-plugin-react-hooks": "1.5.0",
|
||||
"extract-css-chunks-webpack-plugin": "^4.5.4",
|
||||
"favicons-webpack-plugin": "^1.0.2",
|
||||
"html-webpack-plugin": "^3.2.0",
|
||||
"husky": "^3.0.0",
|
||||
"jest": "^24.8.0",
|
||||
@@ -97,7 +103,7 @@
|
||||
"webpack-dev-server": "^3.7.2",
|
||||
"webpack-hot-middleware": "^2.25.0",
|
||||
"webpack-merge": "^4.2.1",
|
||||
"workbox-webpack-plugin": "^4.3.1",
|
||||
"workbox-webpack-plugin": "^5.0.0-beta.1",
|
||||
"worker-loader": "^2.0.0"
|
||||
},
|
||||
"husky": {
|
||||
|
||||
@@ -3,6 +3,168 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
# [1.12.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.11.0...@ohif/core@1.12.0) (2019-11-19)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* New dialog service ([#1202](https://github.com/OHIF/Viewers/issues/1202)) ([f65639c](https://github.com/OHIF/Viewers/commit/f65639c2b0dab01decd20cab2cef4263cb4fab37))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.11.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.10.0...@ohif/core@1.11.0) (2019-11-19)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Issue 879 viewer route query param not filtering but promoting ([#1141](https://github.com/OHIF/Viewers/issues/1141)) ([b17f753](https://github.com/OHIF/Viewers/commit/b17f753e6222045252ef885e40233681541a32e1)), closes [#1118](https://github.com/OHIF/Viewers/issues/1118)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.10.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.9.1...@ohif/core@1.10.0) (2019-11-15)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Inject into Extension Modules / improve tests ([f63d8a7](https://github.com/OHIF/Viewers/commit/f63d8a73d867ad9dfd8ee0cad74edce180eb34f0))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.9.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.9.0...@ohif/core@1.9.1) (2019-11-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/core
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.9.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.8.0...@ohif/core@1.9.0) (2019-11-13)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* expose UiNotifications service ([#1172](https://github.com/OHIF/Viewers/issues/1172)) ([5c04e34](https://github.com/OHIF/Viewers/commit/5c04e34c8fb2394ab7acd9eb4f2ab12afeb2f255))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.8.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.7.1...@ohif/core@1.8.0) (2019-11-12)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Update hotkeys and user preferences modal ([#1135](https://github.com/OHIF/Viewers/issues/1135)) ([e62f5f8](https://github.com/OHIF/Viewers/commit/e62f5f8dd28ab363f23671cd21cee115abb870ff)), closes [#923](https://github.com/OHIF/Viewers/issues/923)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.7.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.7.0...@ohif/core@1.7.1) (2019-11-08)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* Add a fallback metadata provider which pulls metadata from WADO-… ([#1158](https://github.com/OHIF/Viewers/issues/1158)) ([31b1adf](https://github.com/OHIF/Viewers/commit/31b1adfa5993d6c8e3e9c8b03fa9856f2621b037))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.7.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.6.2...@ohif/core@1.7.0) (2019-11-05)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Filter by url query param for seriesInstnaceUID ([#1117](https://github.com/OHIF/Viewers/issues/1117)) ([e208f2e](https://github.com/OHIF/Viewers/commit/e208f2e6a9c49b16dadead0a917f657cf023929a)), closes [#1118](https://github.com/OHIF/Viewers/issues/1118)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.6.2](https://github.com/OHIF/Viewers/compare/@ohif/core@1.6.1...@ohif/core@1.6.2) (2019-11-05)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* [#1075](https://github.com/OHIF/Viewers/issues/1075) Returning to the Study List before all series have finishe… ([#1090](https://github.com/OHIF/Viewers/issues/1090)) ([ecaf578](https://github.com/OHIF/Viewers/commit/ecaf578f92dc40294cec7ff9b272fb432dec4125))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.6.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.6.0...@ohif/core@1.6.1) (2019-10-31)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* application crash if patientName is an object ([#1138](https://github.com/OHIF/Viewers/issues/1138)) ([64cf3b3](https://github.com/OHIF/Viewers/commit/64cf3b324da2383a927af1df2d46db2fca5318aa))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.6.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.5.2...@ohif/core@1.6.0) (2019-10-26)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Snapshot Download Tool ([#840](https://github.com/OHIF/Viewers/issues/840)) ([450e098](https://github.com/OHIF/Viewers/commit/450e0981a5ba054fcfcb85eeaeb18371af9088f8))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.5.2](https://github.com/OHIF/Viewers/compare/@ohif/core@1.5.1...@ohif/core@1.5.2) (2019-10-25)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* set SR in ActiveViewport by clicking thumb ([#1091](https://github.com/OHIF/Viewers/issues/1091)) ([986b7ae](https://github.com/OHIF/Viewers/commit/986b7ae2bf4f7d27f326e62f93285ce20eaf0a79))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.5.1](https://github.com/OHIF/Viewers/compare/@ohif/core@1.5.0...@ohif/core@1.5.1) (2019-10-25)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Orthographic MPR fix ([#1092](https://github.com/OHIF/Viewers/issues/1092)) ([460e375](https://github.com/OHIF/Viewers/commit/460e375f0aa75d35f7a46b4d48e6cc706019956d))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.5.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.4.0...@ohif/core@1.5.0) (2019-10-25)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Allow routes to load Google Cloud DICOM Stores in the Study List ([#1069](https://github.com/OHIF/Viewers/issues/1069)) ([21b586b](https://github.com/OHIF/Viewers/commit/21b586b08f3dde6613859712a9e0577dece564db))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [1.4.0](https://github.com/OHIF/Viewers/compare/@ohif/core@1.3.2...@ohif/core@1.4.0) (2019-10-15)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Only allow reconstruction of datasets that make sense ([#1010](https://github.com/OHIF/Viewers/issues/1010)) ([2d75e01](https://github.com/OHIF/Viewers/commit/2d75e01)), closes [#561](https://github.com/OHIF/Viewers/issues/561)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [1.3.2](https://github.com/OHIF/Viewers/compare/@ohif/core@1.3.1...@ohif/core@1.3.2) (2019-10-14)
|
||||
|
||||
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/core",
|
||||
"version": "1.3.2",
|
||||
"version": "1.12.0",
|
||||
"description": "Generic business logic for web-based medical imaging applications",
|
||||
"author": "OHIF Core Team",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -1,11 +1,14 @@
|
||||
export default function getModalities(modality, modalitiesInStudy) {
|
||||
let modalities = {};
|
||||
if (modality) {
|
||||
modalities = modality;
|
||||
if (!modality && !modalitiesInStudy) {
|
||||
return {};
|
||||
}
|
||||
|
||||
const modalities = modality || {
|
||||
vr: 'CS',
|
||||
Value: [],
|
||||
};
|
||||
|
||||
if (modalitiesInStudy) {
|
||||
// Find vr in modalities
|
||||
if (modalities.vr && modalities.vr === modalitiesInStudy.vr) {
|
||||
for (let i = 0; i < modalitiesInStudy.Value.length; i++) {
|
||||
const value = modalitiesInStudy.Value[i];
|
||||
@@ -14,8 +17,9 @@ export default function getModalities(modality, modalitiesInStudy) {
|
||||
}
|
||||
}
|
||||
} else {
|
||||
modalities = modalitiesInStudy;
|
||||
return modalitiesInStudy;
|
||||
}
|
||||
}
|
||||
|
||||
return modalities;
|
||||
}
|
||||
@@ -1,3 +1,4 @@
|
||||
import cloneDeep from 'lodash.clonedeep';
|
||||
import hotkeys from './hotkeys';
|
||||
import log from './../log.js';
|
||||
|
||||
@@ -51,10 +52,11 @@ export class HotkeysManager {
|
||||
* @param {Boolean} [isDefaultDefinitions]
|
||||
*/
|
||||
setHotkeys(hotkeyDefinitions, isDefaultDefinitions = false) {
|
||||
hotkeyDefinitions.forEach(definition => this.registerHotkeys(definition));
|
||||
const definitions = cloneDeep(hotkeyDefinitions);
|
||||
definitions.forEach(definition => this.registerHotkeys(definition));
|
||||
|
||||
if (isDefaultDefinitions) {
|
||||
this.hotkeyDefaults = hotkeyDefinitions;
|
||||
this.hotkeyDefaults = definitions;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -9,6 +9,7 @@ import { SeriesMetadata } from './SeriesMetadata';
|
||||
import { api } from 'dicomweb-client';
|
||||
// - createStacks
|
||||
import { isImage } from '../../utils/isImage';
|
||||
import isDisplaySetReconstructable from '../../utils/isDisplaySetReconstructable';
|
||||
import isLowPriorityModality from '../../utils/isLowPriorityModality';
|
||||
|
||||
export class StudyMetadata extends Metadata {
|
||||
@@ -146,6 +147,7 @@ export class StudyMetadata extends Metadata {
|
||||
|
||||
if (isMultiFrame(instance)) {
|
||||
displaySet = makeDisplaySet(series, [instance]);
|
||||
|
||||
displaySet.setAttributes({
|
||||
sopClassUids,
|
||||
isClip: true,
|
||||
@@ -620,6 +622,16 @@ const makeDisplaySet = (series, instances) => {
|
||||
imageSet.getImage(0).getRawValue('x00200013')
|
||||
);
|
||||
|
||||
const isReconstructable = isDisplaySetReconstructable(series, instances);
|
||||
|
||||
imageSet.isReconstructable = isReconstructable.value;
|
||||
|
||||
if (isReconstructable.missingFrames) {
|
||||
// TODO -> This is currently unused, but may be used for reconstructing
|
||||
// Volumes with gaps later on.
|
||||
imageSet.missingFrames = isReconstructable.missingFrames;
|
||||
}
|
||||
|
||||
return imageSet;
|
||||
};
|
||||
|
||||
|
||||
@@ -2,12 +2,13 @@ import MODULE_TYPES from './MODULE_TYPES.js';
|
||||
import log from './../log.js';
|
||||
|
||||
export default class ExtensionManager {
|
||||
constructor({ commandsManager }) {
|
||||
constructor({ commandsManager, servicesManager }) {
|
||||
this.modules = {};
|
||||
this.registeredExtensionIds = [];
|
||||
this.moduleTypeNames = Object.values(MODULE_TYPES);
|
||||
//
|
||||
this._commandsManager = commandsManager;
|
||||
this._servicesManager = servicesManager;
|
||||
|
||||
this.moduleTypeNames.forEach(moduleType => {
|
||||
this.modules[moduleType] = [];
|
||||
@@ -66,7 +67,10 @@ export default class ExtensionManager {
|
||||
|
||||
// preRegistrationHook
|
||||
if (extension.preRegistration) {
|
||||
extension.preRegistration(configuration);
|
||||
extension.preRegistration({
|
||||
servicesManager: this._servicesManager,
|
||||
configuration,
|
||||
});
|
||||
}
|
||||
|
||||
// Register Modules
|
||||
@@ -106,7 +110,9 @@ export default class ExtensionManager {
|
||||
}
|
||||
|
||||
try {
|
||||
const extensionModule = getModuleFn();
|
||||
const extensionModule = getModuleFn({
|
||||
servicesManager: this._servicesManager,
|
||||
});
|
||||
|
||||
if (!extensionModule) {
|
||||
log.warn(
|
||||
|
||||
@@ -40,6 +40,30 @@ describe('ExtensionManager.js', () => {
|
||||
});
|
||||
|
||||
describe('registerExtension()', () => {
|
||||
it('calls preRegistration() for extension', () => {
|
||||
// SUT
|
||||
const fakeExtension = { one: '1', preRegistration: jest.fn() };
|
||||
extensionManager.registerExtension(fakeExtension);
|
||||
|
||||
// Assert
|
||||
expect(fakeExtension.preRegistration.mock.calls.length).toBe(1);
|
||||
});
|
||||
|
||||
it('calls preRegistration() passing configuration and servicesManager instance for extension', () => {
|
||||
const configuration = { config: 'Some configuration' };
|
||||
extensionManager._servicesManager = { services: { TestService: {} } };
|
||||
|
||||
// SUT
|
||||
const fakeExtension = { one: '1', preRegistration: jest.fn() };
|
||||
extensionManager.registerExtension(fakeExtension, configuration);
|
||||
|
||||
// Assert
|
||||
expect(fakeExtension.preRegistration.mock.calls[0][0]).toEqual({
|
||||
servicesManager: extensionManager._servicesManager,
|
||||
configuration,
|
||||
});
|
||||
});
|
||||
|
||||
it('logs a warning if the extension is null or undefined', () => {
|
||||
const undefinedExtension = undefined;
|
||||
const nullExtension = null;
|
||||
@@ -110,6 +134,25 @@ describe('ExtensionManager.js', () => {
|
||||
);
|
||||
});
|
||||
|
||||
it('successfully passes a servicesManager instance to each module', () => {
|
||||
extensionManager._servicesManager = { services: { TestService: {} } };
|
||||
|
||||
const extension = {
|
||||
id: 'hello-world',
|
||||
getViewportModule: jest.fn(),
|
||||
getSopClassHandlerModule: jest.fn(),
|
||||
getPanelModule: jest.fn(),
|
||||
getToolbarModule: jest.fn(),
|
||||
getCommandsModule: jest.fn(),
|
||||
};
|
||||
|
||||
extensionManager.registerExtension(extension);
|
||||
|
||||
expect(extension.getViewportModule.mock.calls[0][0]).toEqual({
|
||||
servicesManager: extensionManager._servicesManager,
|
||||
});
|
||||
});
|
||||
|
||||
it('successfully registers a module for each module type', () => {
|
||||
const extension = {
|
||||
id: 'hello-world',
|
||||
|
||||
@@ -1,6 +1,7 @@
|
||||
import './lib';
|
||||
|
||||
import { ExtensionManager, MODULE_TYPES } from './extensions';
|
||||
import { ServicesManager } from './services';
|
||||
import classes, { CommandsManager, HotkeysManager } from './classes/';
|
||||
|
||||
import DICOMWeb from './DICOMWeb';
|
||||
@@ -18,12 +19,19 @@ import ui from './ui';
|
||||
import user from './user.js';
|
||||
import utils from './utils/';
|
||||
|
||||
import {
|
||||
createUINotificationService,
|
||||
createUIModalService,
|
||||
createUIDialogService,
|
||||
} from './services';
|
||||
|
||||
const OHIF = {
|
||||
MODULE_TYPES,
|
||||
//
|
||||
CommandsManager,
|
||||
ExtensionManager,
|
||||
HotkeysManager,
|
||||
ServicesManager,
|
||||
//
|
||||
utils,
|
||||
studies,
|
||||
@@ -41,6 +49,10 @@ const OHIF = {
|
||||
viewer: {},
|
||||
measurements,
|
||||
hangingProtocols,
|
||||
//
|
||||
createUINotificationService,
|
||||
createUIModalService,
|
||||
createUIDialogService,
|
||||
};
|
||||
|
||||
export {
|
||||
@@ -49,6 +61,7 @@ export {
|
||||
CommandsManager,
|
||||
ExtensionManager,
|
||||
HotkeysManager,
|
||||
ServicesManager,
|
||||
//
|
||||
utils,
|
||||
studies,
|
||||
@@ -65,6 +78,10 @@ export {
|
||||
DICOMWeb,
|
||||
measurements,
|
||||
hangingProtocols,
|
||||
//
|
||||
createUINotificationService,
|
||||
createUIModalService,
|
||||
createUIDialogService,
|
||||
};
|
||||
|
||||
export { OHIF };
|
||||
|
||||
@@ -8,6 +8,11 @@ describe('Top level exports', () => {
|
||||
'CommandsManager',
|
||||
'ExtensionManager',
|
||||
'HotkeysManager',
|
||||
'ServicesManager',
|
||||
//
|
||||
'createUINotificationService',
|
||||
'createUIModalService',
|
||||
'createUIDialogService',
|
||||
//
|
||||
'utils',
|
||||
'studies',
|
||||
|
||||
@@ -1,18 +1,15 @@
|
||||
import cloneDeep from 'lodash.clonedeep';
|
||||
|
||||
const defaultState = {
|
||||
// Top level key
|
||||
viewer: {
|
||||
// First tab
|
||||
hotKeysData: {
|
||||
// hotkeyName, label, keys, column
|
||||
// zoom: { label: 'Zoom', command: 'Z', column: 0 },
|
||||
},
|
||||
// Second tab
|
||||
windowLevelData: {
|
||||
// order, description, window (int), level (int)
|
||||
// 0: { description: 'Soft tissue', window: '', level: '' },
|
||||
},
|
||||
// First tab
|
||||
hotkeyDefinitions: [
|
||||
// commandName, label, keys
|
||||
// [{ zoom: { label: 'Zoom', keys: ['z'] }}]
|
||||
],
|
||||
// Second tab
|
||||
windowLevelData: {
|
||||
// order, description, window (int), level (int)
|
||||
// 0: { description: 'Soft tissue', window: '', level: '' },
|
||||
},
|
||||
};
|
||||
|
||||
|
||||
@@ -34,7 +34,6 @@ const defaultState = {
|
||||
* @param {Object} [action.viewportSpecificData]
|
||||
*/
|
||||
const viewports = (state = defaultState, action) => {
|
||||
let currentData;
|
||||
let viewportSpecificData;
|
||||
let useActiveViewport = false;
|
||||
switch (action.type) {
|
||||
@@ -85,14 +84,24 @@ const viewports = (state = defaultState, action) => {
|
||||
// Allow fall-through
|
||||
// eslint-disable-next-line
|
||||
case SET_SPECIFIC_DATA: {
|
||||
const layout = cloneDeep(state.layout);
|
||||
const hasPlugin = action.data && action.data.plugin;
|
||||
const viewportIndex = useActiveViewport
|
||||
? state.activeViewportIndex
|
||||
: action.viewportIndex;
|
||||
currentData = cloneDeep(state.viewportSpecificData[viewportIndex]) || {};
|
||||
viewportSpecificData = cloneDeep(state.viewportSpecificData);
|
||||
viewportSpecificData[viewportIndex] = merge({}, currentData, action.data);
|
||||
const { dom } = state.viewportSpecificData[viewportIndex];
|
||||
|
||||
return Object.assign({}, state, { viewportSpecificData });
|
||||
viewportSpecificData = cloneDeep(state.viewportSpecificData);
|
||||
viewportSpecificData[viewportIndex] = {
|
||||
dom,
|
||||
...action.data,
|
||||
};
|
||||
|
||||
if (hasPlugin) {
|
||||
layout.viewports[viewportIndex].plugin = action.data.plugin;
|
||||
}
|
||||
|
||||
return Object.assign({}, state, { layout, viewportSpecificData });
|
||||
}
|
||||
case CLEAR_VIEWPORT:
|
||||
viewportSpecificData = cloneDeep(state.viewportSpecificData);
|
||||
|
||||
@@ -0,0 +1,49 @@
|
||||
import log from './../log.js';
|
||||
|
||||
export default class ServicesManager {
|
||||
constructor() {
|
||||
this.services = {};
|
||||
this.registeredServiceNames = [];
|
||||
}
|
||||
|
||||
/**
|
||||
*
|
||||
* @param {Object} service
|
||||
*/
|
||||
registerService(service) {
|
||||
if (!service) {
|
||||
log.warn(
|
||||
'Attempting to register a null/undefined service. Exiting early.'
|
||||
);
|
||||
return;
|
||||
}
|
||||
|
||||
let serviceName = service.name;
|
||||
|
||||
if (!serviceName) {
|
||||
log.warn(`Service name not set. Exiting early.`);
|
||||
return;
|
||||
}
|
||||
|
||||
if (this.registeredServiceNames.includes(serviceName)) {
|
||||
log.warn(
|
||||
`Extension name ${serviceName} has already been registered. Exiting before duplicating services.`
|
||||
);
|
||||
return;
|
||||
}
|
||||
|
||||
this.services[service.name] = service;
|
||||
|
||||
// Track service registration
|
||||
this.registeredServiceNames.push(serviceName);
|
||||
}
|
||||
|
||||
/**
|
||||
* An array of services.
|
||||
*
|
||||
* @param {Object[]} services - Array of services
|
||||
*/
|
||||
registerServices(services) {
|
||||
services.forEach(service => this.registerService(service));
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,70 @@
|
||||
import ServicesManager from './ServicesManager.js';
|
||||
import log from '../log.js';
|
||||
|
||||
jest.mock('./../log.js');
|
||||
|
||||
describe('ServicesManager.js', () => {
|
||||
let servicesManager;
|
||||
|
||||
beforeEach(() => {
|
||||
servicesManager = new ServicesManager();
|
||||
log.warn.mockClear();
|
||||
jest.clearAllMocks();
|
||||
});
|
||||
|
||||
describe('registerServices()', () => {
|
||||
it('calls registerService() for each service', () => {
|
||||
servicesManager.registerService = jest.fn();
|
||||
|
||||
const fakeServices = [
|
||||
{ name: 'UINotificationTestService', hide: jest.fn() },
|
||||
{ name: 'UIModalTestService', hide: jest.fn() },
|
||||
];
|
||||
|
||||
servicesManager.registerServices(fakeServices);
|
||||
|
||||
expect(servicesManager.registerService.mock.calls.length).toBe(2);
|
||||
});
|
||||
});
|
||||
|
||||
describe('registerService()', () => {
|
||||
it('logs a warning if the service is null or undefined', () => {
|
||||
const undefinedService = undefined;
|
||||
const nullService = null;
|
||||
|
||||
servicesManager.registerService(undefinedService);
|
||||
servicesManager.registerService(nullService);
|
||||
|
||||
expect(log.warn.mock.calls.length).toBe(2);
|
||||
});
|
||||
|
||||
it('logs a warning if the service does not have a name', () => {
|
||||
const serviceWithEmptyName = { name: '', hide: jest.fn() };
|
||||
const serviceWithoutName = { hide: jest.fn() };
|
||||
|
||||
servicesManager.registerService(serviceWithEmptyName);
|
||||
servicesManager.registerService(serviceWithoutName);
|
||||
|
||||
expect(log.warn.mock.calls.length).toBe(2);
|
||||
});
|
||||
|
||||
it('tracks which services have been registered', () => {
|
||||
const service = {
|
||||
name: 'UINotificationService',
|
||||
};
|
||||
|
||||
servicesManager.registerService(service);
|
||||
|
||||
expect(servicesManager.registeredServiceNames).toContain(service.name);
|
||||
});
|
||||
|
||||
it('logs a warning if the service has an name that has already been registered', () => {
|
||||
const service = { name: 'UINotificationService' };
|
||||
|
||||
servicesManager.registerService(service);
|
||||
servicesManager.registerService(service);
|
||||
|
||||
expect(log.warn.mock.calls.length).toBe(1);
|
||||
});
|
||||
});
|
||||
});
|
||||
@@ -0,0 +1,125 @@
|
||||
/**
|
||||
* A UI Element
|
||||
*
|
||||
* @typedef {ReactElement|HTMLElement} DialogContent
|
||||
*/
|
||||
|
||||
/**
|
||||
* A UI Position
|
||||
*
|
||||
* @typedef {Object} ElementPosition
|
||||
* @property {number} top -
|
||||
* @property {number} left -
|
||||
* @property {number} right -
|
||||
* @property {number} bottom -
|
||||
*/
|
||||
|
||||
/**
|
||||
* UI Dialog
|
||||
*
|
||||
* @typedef {Object} DialogProps
|
||||
* @property {string} id -
|
||||
* @property {DialogContent} content -
|
||||
* @property {boolean} isDraggable -
|
||||
* @property {ElementPosition} defaultPosition -
|
||||
* @property {ElementPosition} position -
|
||||
* @property {Function} onSubmit -
|
||||
* @property {Function} onClose -
|
||||
* @property {Function} onStart -
|
||||
* @property {Function} onStop -
|
||||
* @property {Function} onDrag -
|
||||
*/
|
||||
|
||||
const uiDialogServicePublicAPI = {
|
||||
name: 'UIDialogService',
|
||||
dismiss,
|
||||
dismissAll,
|
||||
create,
|
||||
setServiceImplementation,
|
||||
};
|
||||
|
||||
const uiDialogServiceImplementation = {
|
||||
_dismiss: () => console.warn('dismiss() NOT IMPLEMENTED'),
|
||||
_dismissAll: () => console.warn('dismissAll() NOT IMPLEMENTED'),
|
||||
_create: () => console.warn('create() NOT IMPLEMENTED'),
|
||||
};
|
||||
|
||||
function createUIDialogService() {
|
||||
return uiDialogServicePublicAPI;
|
||||
}
|
||||
|
||||
/**
|
||||
* Show a new UI dialog;
|
||||
*
|
||||
* @param {DialogProps} props { id, content, onSubmit, onClose, onStart, onDrag, onStop, isDraggable, defaultPosition, position }
|
||||
*/
|
||||
function create({
|
||||
id,
|
||||
content,
|
||||
onSubmit,
|
||||
onClose,
|
||||
onStart,
|
||||
onDrag,
|
||||
onStop,
|
||||
isDraggable,
|
||||
defaultPosition,
|
||||
position,
|
||||
}) {
|
||||
return uiDialogServiceImplementation._create({
|
||||
id,
|
||||
content,
|
||||
onSubmit,
|
||||
onClose,
|
||||
onStart,
|
||||
onDrag,
|
||||
onStop,
|
||||
isDraggable,
|
||||
defaultPosition,
|
||||
position,
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Destroys all dialogs, if any
|
||||
*
|
||||
* @returns void
|
||||
*/
|
||||
function dismissAll() {
|
||||
return uiDialogServiceImplementation._dismissAll();
|
||||
}
|
||||
|
||||
/**
|
||||
* Destroy the dialog, if currently created
|
||||
*
|
||||
* @returns void
|
||||
*/
|
||||
function dismiss({ id }) {
|
||||
return uiDialogServiceImplementation._dismiss({ id });
|
||||
}
|
||||
|
||||
/**
|
||||
*
|
||||
*
|
||||
* @param {*} {
|
||||
* dismiss: dismissImplementation,
|
||||
* dismissAll: dismissAllImplementation,
|
||||
* create: createImplementation,
|
||||
* }
|
||||
*/
|
||||
function setServiceImplementation({
|
||||
dismiss: dismissImplementation,
|
||||
dismissAll: dismissAllImplementation,
|
||||
create: createImplementation,
|
||||
}) {
|
||||
if (dismissImplementation) {
|
||||
uiDialogServiceImplementation._dismiss = dismissImplementation;
|
||||
}
|
||||
if (dismissAllImplementation) {
|
||||
uiDialogServiceImplementation._dismissAll = dismissAllImplementation;
|
||||
}
|
||||
if (createImplementation) {
|
||||
uiDialogServiceImplementation._create = createImplementation;
|
||||
}
|
||||
}
|
||||
|
||||
export default createUIDialogService;
|
||||
@@ -0,0 +1,82 @@
|
||||
/**
|
||||
* A UI Element
|
||||
*
|
||||
* @typedef {ReactElement|HTMLElement} Modal
|
||||
*/
|
||||
|
||||
/**
|
||||
* UI Modal
|
||||
*
|
||||
* @typedef {Object} ModalProps
|
||||
* @property {boolean} [shouldCloseOnEsc=false] -
|
||||
* @property {boolean} [isOpen=true] -
|
||||
* @property {boolean} [closeButton=true] -
|
||||
* @property {string} [title=null] - 'Modal Title'
|
||||
* @property {string} [customClassName=null] - '.ModalClass'
|
||||
*/
|
||||
|
||||
const uiModalServicePublicAPI = {
|
||||
name: 'UIModalService',
|
||||
hide,
|
||||
show,
|
||||
setServiceImplementation,
|
||||
};
|
||||
|
||||
const uiModalServiceImplementation = {
|
||||
_hide: () => console.warn('hide() NOT IMPLEMENTED'),
|
||||
_show: () => console.warn('show() NOT IMPLEMENTED'),
|
||||
};
|
||||
|
||||
function createUIModalService() {
|
||||
return uiModalServicePublicAPI;
|
||||
}
|
||||
|
||||
/**
|
||||
* Show a new UI modal;
|
||||
*
|
||||
* @param {Modal} component React component
|
||||
* @param {ModalProps} props { shouldCloseOnEsc, isOpen, closeButton, title, customClassName }
|
||||
*/
|
||||
function show(
|
||||
component,
|
||||
props = {
|
||||
shouldCloseOnEsc: false,
|
||||
isOpen: true,
|
||||
closeButton: true,
|
||||
title: null,
|
||||
customClassName: null,
|
||||
}
|
||||
) {
|
||||
return uiModalServiceImplementation._show(component, props);
|
||||
}
|
||||
|
||||
/**
|
||||
* Hides/dismisses the modal, if currently shown
|
||||
*
|
||||
* @returns void
|
||||
*/
|
||||
function hide() {
|
||||
return uiModalServiceImplementation._hide();
|
||||
}
|
||||
|
||||
/**
|
||||
*
|
||||
*
|
||||
* @param {*} {
|
||||
* hide: hideImplementation,
|
||||
* show: showImplementation,
|
||||
* }
|
||||
*/
|
||||
function setServiceImplementation({
|
||||
hide: hideImplementation,
|
||||
show: showImplementation,
|
||||
}) {
|
||||
if (hideImplementation) {
|
||||
uiModalServiceImplementation._hide = hideImplementation;
|
||||
}
|
||||
if (showImplementation) {
|
||||
uiModalServiceImplementation._show = showImplementation;
|
||||
}
|
||||
}
|
||||
|
||||
export default createUIModalService;
|
||||
@@ -0,0 +1,84 @@
|
||||
/**
|
||||
* A UI Notification
|
||||
*
|
||||
* @typedef {Object} Notification
|
||||
* @property {string} title -
|
||||
* @property {string} message -
|
||||
* @property {number} [duration=5000] - in ms
|
||||
* @property {string} [position="bottomRight"] -"topLeft" | "topCenter | "topRight" | "bottomLeft" | "bottomCenter" | "bottomRight"
|
||||
* @property {string} [type="info"] - "info" | "error" | "warning" | "success"
|
||||
* @property {boolean} [autoClose=true]
|
||||
*/
|
||||
|
||||
const uiNotificationServicePublicAPI = {
|
||||
name: 'UINotificationService',
|
||||
hide,
|
||||
show,
|
||||
setServiceImplementation,
|
||||
};
|
||||
|
||||
const uiNotificationServiceImplementation = {
|
||||
_hide: () => console.warn('hide() NOT IMPLEMENTED'),
|
||||
_show: () => console.warn('show() NOT IMPLEMENTED'),
|
||||
};
|
||||
|
||||
function createUINotificationService() {
|
||||
return uiNotificationServicePublicAPI;
|
||||
}
|
||||
|
||||
/**
|
||||
* Create and show a new UI notification; returns the
|
||||
* ID of the created notification.
|
||||
*
|
||||
* @param {Notification} notification { title, message, duration, position, type, autoClose}
|
||||
* @returns {number} id
|
||||
*/
|
||||
function show({
|
||||
title,
|
||||
message,
|
||||
duration = 5000,
|
||||
position = 'bottomRight',
|
||||
type = 'info',
|
||||
autoClose = true,
|
||||
}) {
|
||||
return uiNotificationServiceImplementation._show({
|
||||
title,
|
||||
message,
|
||||
duration,
|
||||
position,
|
||||
type,
|
||||
autoClose,
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Hides/dismisses the notification, if currently shown
|
||||
*
|
||||
* @param {number} id - id of the notification to hide/dismiss
|
||||
* @returns undefined
|
||||
*/
|
||||
function hide(id) {
|
||||
return uiNotificationServiceImplementation._hide({ id });
|
||||
}
|
||||
|
||||
/**
|
||||
*
|
||||
*
|
||||
* @param {*} {
|
||||
* hide: hideImplementation,
|
||||
* show: showImplementation,
|
||||
* }
|
||||
*/
|
||||
function setServiceImplementation({
|
||||
hide: hideImplementation,
|
||||
show: showImplementation,
|
||||
}) {
|
||||
if (hideImplementation) {
|
||||
uiNotificationServiceImplementation._hide = hideImplementation;
|
||||
}
|
||||
if (showImplementation) {
|
||||
uiNotificationServiceImplementation._show = showImplementation;
|
||||
}
|
||||
}
|
||||
|
||||
export default createUINotificationService;
|
||||
@@ -0,0 +1,11 @@
|
||||
import ServicesManager from './ServicesManager.js';
|
||||
import createUINotificationService from './UINotificationService';
|
||||
import createUIModalService from './UIModalService';
|
||||
import createUIDialogService from './UIDialogService';
|
||||
|
||||
export {
|
||||
createUINotificationService,
|
||||
createUIModalService,
|
||||
createUIDialogService,
|
||||
ServicesManager,
|
||||
};
|
||||
@@ -0,0 +1,25 @@
|
||||
import DICOMWeb from '../DICOMWeb/';
|
||||
import isLowPriorityModality from '../utils/isLowPriorityModality';
|
||||
|
||||
const INFO = Symbol('INFO');
|
||||
|
||||
/**
|
||||
* Creates an object with processed series information and saves its reference
|
||||
* inside the series object itself.
|
||||
* @param {Object} series The raw series object
|
||||
* @returns {Object} object containing some useful info from given series
|
||||
*/
|
||||
export default function getSeriesInfo(series) {
|
||||
let info = series[INFO];
|
||||
if (!info) {
|
||||
const modality = DICOMWeb.getString(series['00080060'], '').toUpperCase();
|
||||
info = Object.freeze({
|
||||
modality,
|
||||
isLowPriority: isLowPriorityModality(modality),
|
||||
seriesInstanceUid: DICOMWeb.getString(series['0020000E']),
|
||||
seriesNumber: DICOMWeb.getNumber(series['00200011'], 0) || 0,
|
||||
});
|
||||
series[INFO] = info;
|
||||
}
|
||||
return info;
|
||||
}
|
||||
@@ -7,13 +7,16 @@ import { retrieveStudyMetadata } from './retrieveStudyMetadata';
|
||||
* This function calls retrieveStudyMetadata several times, asynchronously,
|
||||
* and waits for all of the results to be returned.
|
||||
*
|
||||
* @param studyInstanceUids The UIDs of the Studies to be retrieved
|
||||
* @return Promise
|
||||
* @param {Object} server Object with server configuration parameters
|
||||
* @param {Array} studyInstanceUids The UIDs of the Studies to be retrieved
|
||||
* @param {Object} [filters] - Object containing filters to be applied on retrieve metadata process
|
||||
* @param {string} [filter.seriesInstanceUID] - series instance uid to filter results against
|
||||
* @returns {Promise} that will be resolved with the metadata or rejected with the error
|
||||
*/
|
||||
export default function retrieveStudiesMetadata(
|
||||
server,
|
||||
studyInstanceUids,
|
||||
seriesInstanceUids
|
||||
filters
|
||||
) {
|
||||
// Create an empty array to store the Promises for each metaData retrieval call
|
||||
const promises = [];
|
||||
@@ -21,11 +24,7 @@ export default function retrieveStudiesMetadata(
|
||||
// Loop through the array of studyInstanceUids
|
||||
studyInstanceUids.forEach(function(studyInstanceUid) {
|
||||
// Send the call and resolve or reject the related promise based on its outcome
|
||||
const promise = retrieveStudyMetadata(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUids
|
||||
);
|
||||
const promise = retrieveStudyMetadata(server, studyInstanceUid, filters);
|
||||
|
||||
// Add the current promise to the array of promises
|
||||
promises.push(promise);
|
||||
|
||||
@@ -7,11 +7,13 @@ const StudyMetaDataPromises = new Map();
|
||||
/**
|
||||
* Retrieves study metadata
|
||||
*
|
||||
* @param {Object} server
|
||||
* @param {Object} server Object with server configuration parameters
|
||||
* @param {string} studyInstanceUid The UID of the Study to be retrieved
|
||||
* @param {Object} [filters] - Object containing filters to be applied on retrieve metadata process
|
||||
* @param {string} [filter.seriesInstanceUID] - series instance uid to filter results against
|
||||
* @returns {Promise} that will be resolved with the metadata or rejected with the error
|
||||
*/
|
||||
export function retrieveStudyMetadata(server, studyInstanceUid) {
|
||||
export function retrieveStudyMetadata(server, studyInstanceUid, filters) {
|
||||
// @TODO: Whenever a study metadata request has failed, its related promise will be rejected once and for all
|
||||
// and further requests for that metadata will always fail. On failure, we probably need to remove the
|
||||
// corresponding promise from the "StudyMetaDataPromises" map...
|
||||
@@ -32,7 +34,7 @@ export function retrieveStudyMetadata(server, studyInstanceUid) {
|
||||
|
||||
// Create a promise to handle the data retrieval
|
||||
const promise = new Promise((resolve, reject) => {
|
||||
RetrieveMetadata(server, studyInstanceUid).then(function(data) {
|
||||
RetrieveMetadata(server, studyInstanceUid, filters).then(function(data) {
|
||||
resolve(data);
|
||||
}, reject);
|
||||
});
|
||||
|
||||
@@ -30,7 +30,7 @@ function dateToString(date) {
|
||||
function getQIDOQueryParams(filter, serverSupportsQIDOIncludeField) {
|
||||
const commaSeparatedFields = [
|
||||
'00081030', // Study Description
|
||||
'00080060', //Modality
|
||||
'00080060', // Modality
|
||||
// Add more fields here if you want them in the result
|
||||
].join(',');
|
||||
|
||||
|
||||
@@ -1,609 +1,30 @@
|
||||
import { api } from 'dicomweb-client';
|
||||
import DICOMWeb from '../../../DICOMWeb/';
|
||||
import isLowPriorityModality from '../../../utils/isLowPriorityModality';
|
||||
|
||||
const INFO = Symbol('INFO');
|
||||
|
||||
const WADOProxy = {
|
||||
convertURL: (url, server) => {
|
||||
// TODO: Remove all WADOProxy stuff from this file
|
||||
return url;
|
||||
},
|
||||
};
|
||||
|
||||
function parseFloatArray(obj) {
|
||||
const result = [];
|
||||
|
||||
if (!obj) {
|
||||
return result;
|
||||
}
|
||||
|
||||
const objs = obj.split('\\');
|
||||
for (let i = 0; i < objs.length; i++) {
|
||||
result.push(parseFloat(objs[i]));
|
||||
}
|
||||
|
||||
return result;
|
||||
}
|
||||
|
||||
/**
|
||||
* Simple cache schema for retrieved color palettes.
|
||||
*/
|
||||
const paletteColorCache = {
|
||||
count: 0,
|
||||
maxAge: 24 * 60 * 60 * 1000, // 24h cache?
|
||||
entries: {},
|
||||
isValidUID: function(paletteUID) {
|
||||
return typeof paletteUID === 'string' && paletteUID.length > 0;
|
||||
},
|
||||
get: function(paletteUID) {
|
||||
let entry = null;
|
||||
if (this.entries.hasOwnProperty(paletteUID)) {
|
||||
entry = this.entries[paletteUID];
|
||||
// check how the entry is...
|
||||
if (Date.now() - entry.time > this.maxAge) {
|
||||
// entry is too old... remove entry.
|
||||
delete this.entries[paletteUID];
|
||||
this.count--;
|
||||
entry = null;
|
||||
}
|
||||
}
|
||||
return entry;
|
||||
},
|
||||
add: function(entry) {
|
||||
if (this.isValidUID(entry.uid)) {
|
||||
let paletteUID = entry.uid;
|
||||
if (this.entries.hasOwnProperty(paletteUID) !== true) {
|
||||
this.count++; // increment cache entry count...
|
||||
}
|
||||
entry.time = Date.now();
|
||||
this.entries[paletteUID] = entry;
|
||||
// @TODO: Add logic to get rid of old entries and reduce memory usage...
|
||||
}
|
||||
},
|
||||
};
|
||||
|
||||
/** Returns a WADO url for an instance
|
||||
*
|
||||
* @param studyInstanceUid
|
||||
* @param seriesInstanceUid
|
||||
* @param sopInstanceUid
|
||||
* @returns {string}
|
||||
*/
|
||||
function buildInstanceWadoUrl(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
) {
|
||||
// TODO: This can be removed, since DICOMWebClient has the same function. Not urgent, though
|
||||
const params = [];
|
||||
|
||||
params.push('requestType=WADO');
|
||||
params.push(`studyUID=${studyInstanceUid}`);
|
||||
params.push(`seriesUID=${seriesInstanceUid}`);
|
||||
params.push(`objectUID=${sopInstanceUid}`);
|
||||
params.push('contentType=application/dicom');
|
||||
params.push('transferSyntax=*');
|
||||
|
||||
const paramString = params.join('&');
|
||||
|
||||
return `${server.wadoUriRoot}?${paramString}`;
|
||||
}
|
||||
|
||||
function buildInstanceWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
) {
|
||||
return `${server.wadoRoot}/studies/${studyInstanceUid}/series/${seriesInstanceUid}/instances/${sopInstanceUid}`;
|
||||
}
|
||||
|
||||
function buildInstanceFrameWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid,
|
||||
frame
|
||||
) {
|
||||
const baseWadoRsUri = buildInstanceWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
);
|
||||
frame = frame != null || 1;
|
||||
|
||||
return `${baseWadoRsUri}/frames/${frame}`;
|
||||
}
|
||||
|
||||
/**
|
||||
* Parses the SourceImageSequence, if it exists, in order
|
||||
* to return a ReferenceSOPInstanceUID. The ReferenceSOPInstanceUID
|
||||
* is used to refer to this image in any accompanying DICOM-SR documents.
|
||||
*
|
||||
* @param instance
|
||||
* @returns {String} The ReferenceSOPInstanceUID
|
||||
*/
|
||||
function getSourceImageInstanceUid(instance) {
|
||||
// TODO= Parse the whole Source Image Sequence
|
||||
// This is a really poor workaround for now.
|
||||
// Later we should probably parse the whole sequence.
|
||||
var SourceImageSequence = instance['00082112'];
|
||||
if (
|
||||
SourceImageSequence &&
|
||||
SourceImageSequence.Value &&
|
||||
SourceImageSequence.Value.length &&
|
||||
SourceImageSequence.Value[0]['00081155'].Value
|
||||
) {
|
||||
return SourceImageSequence.Value[0]['00081155'].Value[0];
|
||||
}
|
||||
}
|
||||
|
||||
function getPaletteColor(server, instance, tag, lutDescriptor) {
|
||||
const numLutEntries = lutDescriptor[0];
|
||||
const bits = lutDescriptor[2];
|
||||
|
||||
let uri = WADOProxy.convertURL(instance[tag].BulkDataURI, server);
|
||||
|
||||
// TODO: Workaround for dcm4chee behind SSL-terminating proxy returning
|
||||
// incorrect bulk data URIs
|
||||
if (server.wadoRoot.indexOf('https') === 0 && !uri.includes('https')) {
|
||||
uri = uri.replace('http', 'https');
|
||||
}
|
||||
|
||||
const config = {
|
||||
url: server.wadoRoot, //BulkDataURI is absolute, so this isn't used
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
};
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
const options = {
|
||||
BulkDataURI: uri,
|
||||
};
|
||||
|
||||
const readUInt16 = (byteArray, position) => {
|
||||
return byteArray[position] + byteArray[position + 1] * 256;
|
||||
};
|
||||
|
||||
const arrayBufferToPaletteColorLUT = result => {
|
||||
const arraybuffer = result[0];
|
||||
const byteArray = new Uint8Array(arraybuffer);
|
||||
const lut = [];
|
||||
|
||||
for (let i = 0; i < numLutEntries; i++) {
|
||||
if (bits === 16) {
|
||||
lut[i] = readUInt16(byteArray, i * 2);
|
||||
} else {
|
||||
lut[i] = byteArray[i];
|
||||
}
|
||||
}
|
||||
|
||||
return lut;
|
||||
};
|
||||
|
||||
return dicomWeb.retrieveBulkData(options).then(arrayBufferToPaletteColorLUT);
|
||||
}
|
||||
|
||||
/**
|
||||
* Fetch palette colors for instances with "PALETTE COLOR" photometricInterpretation.
|
||||
*
|
||||
* @param server {Object} Current server;
|
||||
* @param instance {Object} The retrieved instance metadata;
|
||||
* @returns {String} The ReferenceSOPInstanceUID
|
||||
*/
|
||||
async function getPaletteColors(server, instance, lutDescriptor) {
|
||||
let paletteUID = DICOMWeb.getString(instance['00281199']);
|
||||
|
||||
return new Promise((resolve, reject) => {
|
||||
let entry;
|
||||
if (paletteColorCache.isValidUID(paletteUID)) {
|
||||
entry = paletteColorCache.get(paletteUID);
|
||||
|
||||
if (entry) {
|
||||
return resolve(entry);
|
||||
}
|
||||
}
|
||||
|
||||
// no entry in cache... Fetch remote data.
|
||||
const r = getPaletteColor(server, instance, '00281201', lutDescriptor);
|
||||
const g = getPaletteColor(server, instance, '00281202', lutDescriptor);
|
||||
const b = getPaletteColor(server, instance, '00281203', lutDescriptor);
|
||||
|
||||
const promises = [r, g, b];
|
||||
|
||||
Promise.all(promises).then(args => {
|
||||
entry = {
|
||||
red: args[0],
|
||||
green: args[1],
|
||||
blue: args[2],
|
||||
};
|
||||
|
||||
// when paletteUID is present, the entry can be cached...
|
||||
entry.uid = paletteUID;
|
||||
paletteColorCache.add(entry);
|
||||
|
||||
resolve(entry);
|
||||
});
|
||||
});
|
||||
}
|
||||
|
||||
function getFrameIncrementPointer(element) {
|
||||
const frameIncrementPointerNames = {
|
||||
'00181065': 'frameTimeVector',
|
||||
'00181063': 'frameTime',
|
||||
};
|
||||
|
||||
if (!element || !element.Value || !element.Value.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
const value = element.Value[0];
|
||||
return frameIncrementPointerNames[value];
|
||||
}
|
||||
|
||||
function getRadiopharmaceuticalInfo(instance) {
|
||||
const modality = DICOMWeb.getString(instance['00080060']);
|
||||
|
||||
if (modality !== 'PT') {
|
||||
return;
|
||||
}
|
||||
|
||||
const radiopharmaceuticalInfo = instance['00540016'];
|
||||
if (
|
||||
radiopharmaceuticalInfo === undefined ||
|
||||
!radiopharmaceuticalInfo.Value ||
|
||||
!radiopharmaceuticalInfo.Value.length
|
||||
) {
|
||||
return;
|
||||
}
|
||||
|
||||
const firstPetRadiopharmaceuticalInfo = radiopharmaceuticalInfo.Value[0];
|
||||
return {
|
||||
radiopharmaceuticalStartTime: DICOMWeb.getString(
|
||||
firstPetRadiopharmaceuticalInfo['00181072']
|
||||
),
|
||||
radionuclideTotalDose: DICOMWeb.getNumber(
|
||||
firstPetRadiopharmaceuticalInfo['00181074']
|
||||
),
|
||||
radionuclideHalfLife: DICOMWeb.getNumber(
|
||||
firstPetRadiopharmaceuticalInfo['00181075']
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
async function makeSOPInstance(server, study, instance) {
|
||||
const { studyInstanceUid } = study;
|
||||
const seriesInstanceUid = DICOMWeb.getString(instance['0020000E']);
|
||||
let series = study.seriesMap[seriesInstanceUid];
|
||||
|
||||
if (!series) {
|
||||
series = {
|
||||
seriesInstanceUid,
|
||||
seriesDescription: DICOMWeb.getString(instance['0008103E']),
|
||||
modality: DICOMWeb.getString(instance['00080060']),
|
||||
seriesNumber: DICOMWeb.getNumber(instance['00200011']),
|
||||
seriesDate: DICOMWeb.getString(instance['00080021']),
|
||||
seriesTime: DICOMWeb.getString(instance['00080031']),
|
||||
instances: [],
|
||||
};
|
||||
study.seriesMap[seriesInstanceUid] = series;
|
||||
study.seriesList.push(series);
|
||||
}
|
||||
|
||||
const sopInstanceUid = DICOMWeb.getString(instance['00080018']);
|
||||
const wadouri = buildInstanceWadoUrl(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
);
|
||||
const baseWadoRsUri = buildInstanceWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
);
|
||||
const wadorsuri = buildInstanceFrameWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
);
|
||||
|
||||
const sopInstance = {
|
||||
imageType: DICOMWeb.getString(instance['00080008']),
|
||||
sopClassUid: DICOMWeb.getString(instance['00080016']),
|
||||
modality: DICOMWeb.getString(instance['00080060']),
|
||||
sopInstanceUid,
|
||||
instanceNumber: DICOMWeb.getNumber(instance['00200013']),
|
||||
imagePositionPatient: DICOMWeb.getString(instance['00200032']),
|
||||
imageOrientationPatient: DICOMWeb.getString(instance['00200037']),
|
||||
frameOfReferenceUID: DICOMWeb.getString(instance['00200052']),
|
||||
sliceLocation: DICOMWeb.getNumber(instance['00201041']),
|
||||
samplesPerPixel: DICOMWeb.getNumber(instance['00280002']),
|
||||
photometricInterpretation: DICOMWeb.getString(instance['00280004']),
|
||||
planarConfiguration: DICOMWeb.getNumber(instance['00280006']),
|
||||
rows: DICOMWeb.getNumber(instance['00280010']),
|
||||
columns: DICOMWeb.getNumber(instance['00280011']),
|
||||
pixelSpacing: DICOMWeb.getString(instance['00280030']),
|
||||
pixelAspectRatio: DICOMWeb.getString(instance['00280034']),
|
||||
bitsAllocated: DICOMWeb.getNumber(instance['00280100']),
|
||||
bitsStored: DICOMWeb.getNumber(instance['00280101']),
|
||||
highBit: DICOMWeb.getNumber(instance['00280102']),
|
||||
pixelRepresentation: DICOMWeb.getNumber(instance['00280103']),
|
||||
smallestPixelValue: DICOMWeb.getNumber(instance['00280106']),
|
||||
largestPixelValue: DICOMWeb.getNumber(instance['00280107']),
|
||||
windowCenter: DICOMWeb.getString(instance['00281050']),
|
||||
windowWidth: DICOMWeb.getString(instance['00281051']),
|
||||
rescaleIntercept: DICOMWeb.getNumber(instance['00281052']),
|
||||
rescaleSlope: DICOMWeb.getNumber(instance['00281053']),
|
||||
rescaleType: DICOMWeb.getNumber(instance['00281054']),
|
||||
sourceImageInstanceUid: getSourceImageInstanceUid(instance),
|
||||
laterality: DICOMWeb.getString(instance['00200062']),
|
||||
viewPosition: DICOMWeb.getString(instance['00185101']),
|
||||
acquisitionDateTime: DICOMWeb.getString(instance['0008002A']),
|
||||
numberOfFrames: DICOMWeb.getNumber(instance['00280008']),
|
||||
frameIncrementPointer: getFrameIncrementPointer(instance['00280009']),
|
||||
frameTime: DICOMWeb.getNumber(instance['00181063']),
|
||||
frameTimeVector: parseFloatArray(DICOMWeb.getString(instance['00181065'])),
|
||||
sliceThickness: DICOMWeb.getNumber(instance['00180050']),
|
||||
spacingBetweenSlices: DICOMWeb.getString(instance['00180088']),
|
||||
lossyImageCompression: DICOMWeb.getString(instance['00282110']),
|
||||
derivationDescription: DICOMWeb.getString(instance['00282111']),
|
||||
lossyImageCompressionRatio: DICOMWeb.getString(instance['00282112']),
|
||||
lossyImageCompressionMethod: DICOMWeb.getString(instance['00282114']),
|
||||
echoNumber: DICOMWeb.getString(instance['00180086']),
|
||||
contrastBolusAgent: DICOMWeb.getString(instance['00180010']),
|
||||
radiopharmaceuticalInfo: getRadiopharmaceuticalInfo(instance),
|
||||
baseWadoRsUri: baseWadoRsUri,
|
||||
wadouri: WADOProxy.convertURL(wadouri, server),
|
||||
wadorsuri: WADOProxy.convertURL(wadorsuri, server),
|
||||
wadoRoot: server.wadoRoot,
|
||||
imageRendering: server.imageRendering,
|
||||
thumbnailRendering: server.thumbnailRendering,
|
||||
};
|
||||
|
||||
// Get additional information if the instance uses "PALETTE COLOR" photometric interpretation
|
||||
if (sopInstance.photometricInterpretation === 'PALETTE COLOR') {
|
||||
const redPaletteColorLookupTableDescriptor = parseFloatArray(
|
||||
DICOMWeb.getString(instance['00281101'])
|
||||
);
|
||||
const greenPaletteColorLookupTableDescriptor = parseFloatArray(
|
||||
DICOMWeb.getString(instance['00281102'])
|
||||
);
|
||||
const bluePaletteColorLookupTableDescriptor = parseFloatArray(
|
||||
DICOMWeb.getString(instance['00281103'])
|
||||
);
|
||||
const palettes = await getPaletteColors(
|
||||
server,
|
||||
instance,
|
||||
redPaletteColorLookupTableDescriptor
|
||||
);
|
||||
|
||||
if (palettes) {
|
||||
if (palettes.uid) {
|
||||
sopInstance.paletteColorLookupTableUID = palettes.uid;
|
||||
}
|
||||
|
||||
sopInstance.redPaletteColorLookupTableData = palettes.red;
|
||||
sopInstance.greenPaletteColorLookupTableData = palettes.green;
|
||||
sopInstance.bluePaletteColorLookupTableData = palettes.blue;
|
||||
sopInstance.redPaletteColorLookupTableDescriptor = redPaletteColorLookupTableDescriptor;
|
||||
sopInstance.greenPaletteColorLookupTableDescriptor = greenPaletteColorLookupTableDescriptor;
|
||||
sopInstance.bluePaletteColorLookupTableDescriptor = bluePaletteColorLookupTableDescriptor;
|
||||
}
|
||||
}
|
||||
|
||||
series.instances.push(sopInstance);
|
||||
return sopInstance;
|
||||
}
|
||||
|
||||
/**
|
||||
* Create a plain JS object that describes a study (a study descriptor object)
|
||||
* @param {Object} server Object with server configuration paramenters
|
||||
* @param {Object} aSopInstance a SOP Instance from which study information will be added
|
||||
*/
|
||||
function createStudy(server, aSopInstance) {
|
||||
// TODO: Pass a reference ID to the server instead of including the URLs here
|
||||
return {
|
||||
seriesList: [],
|
||||
seriesMap: Object.create(null),
|
||||
seriesLoader: null,
|
||||
wadoUriRoot: server.wadoUriRoot,
|
||||
wadoRoot: server.wadoRoot,
|
||||
qidoRoot: server.qidoRoot,
|
||||
patientName: DICOMWeb.getName(aSopInstance['00100010']),
|
||||
patientId: DICOMWeb.getString(aSopInstance['00100020']),
|
||||
patientAge: DICOMWeb.getNumber(aSopInstance['00101010']),
|
||||
patientSize: DICOMWeb.getNumber(aSopInstance['00101020']),
|
||||
patientWeight: DICOMWeb.getNumber(aSopInstance['00101030']),
|
||||
accessionNumber: DICOMWeb.getString(aSopInstance['00080050']),
|
||||
studyDate: DICOMWeb.getString(aSopInstance['00080020']),
|
||||
modalities: DICOMWeb.getString(aSopInstance['00080061']),
|
||||
studyDescription: DICOMWeb.getString(aSopInstance['00081030']),
|
||||
imageCount: DICOMWeb.getString(aSopInstance['00201208']),
|
||||
studyInstanceUid: DICOMWeb.getString(aSopInstance['0020000D']),
|
||||
institutionName: DICOMWeb.getString(aSopInstance['00080080']),
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
* Add a list of SOP Instances to a given study object descriptor
|
||||
* @param {Object} server Object with server configuration paramenters
|
||||
* @param {Object} study The study descriptor to which the given SOP instances will be added
|
||||
* @param {Array} sopInstanceList A list of SOP instance objects
|
||||
*/
|
||||
async function addInstancesToStudy(server, study, sopInstanceList) {
|
||||
return Promise.all(
|
||||
sopInstanceList.map(function(sopInstance) {
|
||||
return makeSOPInstance(server, study, sopInstance);
|
||||
})
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Parses result data from a WADO search into Study MetaData
|
||||
* Returns an object populated with study metadata, including the
|
||||
* series list.
|
||||
*
|
||||
* @param {Object} server Object with server configuration paramenters
|
||||
* @param {Array} sopInstanceList List of SOP Instances that build up to the study
|
||||
* @resolves {{seriesList: Array, patientName: *, patientId: *, accessionNumber: *, studyDate: *, modalities: *, studyDescription: *, imageCount: *, studyInstanceUid: *}}
|
||||
*/
|
||||
async function createStudyFromSOPInstanceList(server, sopInstanceList) {
|
||||
if (Array.isArray(sopInstanceList) && sopInstanceList.length > 0) {
|
||||
const firstSopInstance = sopInstanceList[0];
|
||||
const study = createStudy(server, firstSopInstance);
|
||||
await addInstancesToStudy(server, study, sopInstanceList);
|
||||
return study;
|
||||
}
|
||||
throw new Error('Failed to create study out of provided SOP instance list');
|
||||
}
|
||||
import RetrieveMetadataLoaderSync from './retrieveMetadataLoaderSync';
|
||||
import RetrieveMetadataLoaderAsync from './retrieveMetadataLoaderAsync';
|
||||
|
||||
/**
|
||||
* Retrieve Study metadata from a DICOM server. If the server is configured to use lazy load, only the first series
|
||||
* will be loaded and the property "studyLoader" will be set to let consumer load remaining series as needed
|
||||
* @param {Object} server Object with server configuration paramenters
|
||||
* will be loaded and the property "studyLoader" will be set to let consumer load remaining series as needed.
|
||||
*
|
||||
* @param {Object} server Object with server configuration parameters
|
||||
* @param {string} studyInstanceUid The Study Instance UID of the study which needs to be loaded
|
||||
* @param {Object} [filters] - Object containing filters to be applied on retrieve metadata process
|
||||
* @param {string} [filter.seriesInstanceUID] - series instance uid to filter results against
|
||||
* @returns {Object} A study descriptor object
|
||||
*/
|
||||
async function RetrieveMetadata(server, studyInstanceUid) {
|
||||
return (server.enableStudyLazyLoad !== false
|
||||
? lazyLoadStudyMetadata
|
||||
: loadStudyMetadata)(server, studyInstanceUid);
|
||||
}
|
||||
async function RetrieveMetadata(server, studyInstanceUid, filters = {}) {
|
||||
const RetrieveMetadataLoader =
|
||||
server.enableStudyLazyLoad !== false
|
||||
? RetrieveMetadataLoaderAsync
|
||||
: RetrieveMetadataLoaderSync;
|
||||
|
||||
/**
|
||||
*
|
||||
* @param {*} server
|
||||
* @param {*} studyInstanceUID
|
||||
*/
|
||||
async function loadStudyMetadata(server, studyInstanceUID) {
|
||||
const dicomWeb = new api.DICOMwebClient({
|
||||
url: server.wadoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
});
|
||||
return dicomWeb
|
||||
.retrieveStudyMetadata({ studyInstanceUID })
|
||||
.then(result => createStudyFromSOPInstanceList(server, result));
|
||||
}
|
||||
|
||||
async function lazyLoadStudyMetadata(server, studyInstanceUid) {
|
||||
const seriesInstanceUids = await searchStudySeries(server, studyInstanceUid);
|
||||
const dicomWeb = new api.DICOMwebClient({
|
||||
url: server.wadoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
});
|
||||
const seriesLoader = makeSeriesLoader(
|
||||
dicomWeb,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUids
|
||||
);
|
||||
const firstSeries = await seriesLoader.next();
|
||||
const study = await createStudyFromSOPInstanceList(
|
||||
const retrieveMetadataLoader = new RetrieveMetadataLoader(
|
||||
server,
|
||||
firstSeries.sopInstances
|
||||
studyInstanceUid,
|
||||
filters
|
||||
);
|
||||
if (seriesLoader.hasNext()) {
|
||||
attachSeriesLoader(server, study, seriesLoader);
|
||||
}
|
||||
return study;
|
||||
}
|
||||
const studyMetadata = retrieveMetadataLoader.execLoad();
|
||||
|
||||
function attachSeriesLoader(server, study, seriesLoader) {
|
||||
study.seriesLoader = Object.freeze({
|
||||
hasNext() {
|
||||
return seriesLoader.hasNext();
|
||||
},
|
||||
async next() {
|
||||
const series = await seriesLoader.next();
|
||||
await addInstancesToStudy(server, study, series.sopInstances);
|
||||
return study.seriesMap[series.seriesInstanceUID];
|
||||
},
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Creates an immutable series loader object which loads each series sequentially using the iterator interface
|
||||
* @param {DICOMWebClient} dicomWebClient The DICOMWebClient instance to be used for series load
|
||||
* @param {string} studyInstanceUID The Study Instance UID from which series will be loaded
|
||||
* @param {Array} seriesInstanceUIDList A list of Series Instance UIDs
|
||||
* @returns {Object} Returns an object which supports loading of instances from each of given Series Instance UID
|
||||
*/
|
||||
function makeSeriesLoader(
|
||||
dicomWebClient,
|
||||
studyInstanceUID,
|
||||
seriesInstanceUIDList
|
||||
) {
|
||||
return Object.freeze({
|
||||
hasNext() {
|
||||
return seriesInstanceUIDList.length > 0;
|
||||
},
|
||||
async next() {
|
||||
const seriesInstanceUID = seriesInstanceUIDList.shift();
|
||||
const sopInstances = await dicomWebClient.retrieveSeriesMetadata({
|
||||
studyInstanceUID,
|
||||
seriesInstanceUID,
|
||||
});
|
||||
return { studyInstanceUID, seriesInstanceUID, sopInstances };
|
||||
},
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Search series of a given study
|
||||
* @param {Object} server Object with server configuration paramenters
|
||||
* @param {string} studyInstanceUID The Study Instance UID to search series from;
|
||||
* @returns {Arrays} A list of Series Instance UIDs
|
||||
*/
|
||||
async function searchStudySeries(server, studyInstanceUID) {
|
||||
const dicomWeb = new api.DICOMwebClient({
|
||||
url: server.qidoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
});
|
||||
const seriesList = await dicomWeb.searchForSeries({ studyInstanceUID });
|
||||
return seriesList
|
||||
.sort(seriesSortingCriteria)
|
||||
.map(series => getSeriesInfo(series).seriesInstanceUid);
|
||||
}
|
||||
|
||||
/**
|
||||
* Series sorting criteria: series considered low priority are moved to the end
|
||||
* of the list and series number is used to break ties
|
||||
* @param {Object} firstSeries
|
||||
* @param {Object} secondSeries
|
||||
*/
|
||||
function seriesSortingCriteria(firstSeries, secondSeries) {
|
||||
const a = getSeriesInfo(firstSeries);
|
||||
const b = getSeriesInfo(secondSeries);
|
||||
if (!a.isLowPriority && b.isLowPriority) {
|
||||
return -1;
|
||||
}
|
||||
if (a.isLowPriority && !b.isLowPriority) {
|
||||
return 1;
|
||||
}
|
||||
return a.seriesNumber - b.seriesNumber;
|
||||
}
|
||||
|
||||
/**
|
||||
* Creates an object with processed series information and saves its reference
|
||||
* inside the series object itself to simplify sorting
|
||||
* @param {Object} series The raw series object
|
||||
*/
|
||||
function getSeriesInfo(series) {
|
||||
let info = series[INFO];
|
||||
if (!info) {
|
||||
const modality = DICOMWeb.getString(series['00080060'], '').toUpperCase();
|
||||
info = Object.freeze({
|
||||
modality,
|
||||
isLowPriority: isLowPriorityModality(modality),
|
||||
seriesInstanceUid: DICOMWeb.getString(series['0020000E']),
|
||||
seriesNumber: DICOMWeb.getNumber(series['00200011'], 0) || 0,
|
||||
});
|
||||
series[INFO] = info;
|
||||
}
|
||||
return info;
|
||||
return studyMetadata;
|
||||
}
|
||||
|
||||
export default RetrieveMetadata;
|
||||
@@ -0,0 +1,58 @@
|
||||
/**
|
||||
* Class to define inheritance of load retrieve strategy.
|
||||
* The process can be async load (lazy) or sync load
|
||||
*
|
||||
* There are methods that must be implemented at consumer level
|
||||
* To retrieve study call execLoad
|
||||
*/
|
||||
export default class RetrieveMetadataLoader {
|
||||
/**
|
||||
* @constructor
|
||||
* @param {Object} server Object with server configuration parameters
|
||||
* @param {Array} studyInstanceUID Study instance ui to be retrieved
|
||||
* @param {Object} [filters] - Object containing filters to be applied on retrieve metadata process
|
||||
* @param {string} [filter.seriesInstanceUID] - series instance uid to filter results against
|
||||
*/
|
||||
constructor(server, studyInstanceUID, filters = {}) {
|
||||
this.server = server;
|
||||
this.studyInstanceUID = studyInstanceUID;
|
||||
this.filters = filters;
|
||||
}
|
||||
|
||||
async execLoad() {
|
||||
await this.configLoad();
|
||||
const preLoadData = await this.preLoad();
|
||||
const loadData = await this.load(preLoadData);
|
||||
const postLoadData = await this.posLoad(loadData);
|
||||
|
||||
return postLoadData;
|
||||
}
|
||||
|
||||
/**
|
||||
* It iterates over given loaders running each one. Loaders parameters must be bind when getting it.
|
||||
* @param {Array} loaders - array of loader to retrieve data.
|
||||
*/
|
||||
async runLoaders(loaders) {
|
||||
let result;
|
||||
for (const loader of loaders) {
|
||||
try {
|
||||
result = await loader();
|
||||
if (result && result.length) {
|
||||
break; // closes iterator in case data is retrieved successfully
|
||||
}
|
||||
} catch (e) { }
|
||||
}
|
||||
|
||||
if (loaders.next().done && !result) {
|
||||
throw 'cant find data';
|
||||
}
|
||||
|
||||
return result;
|
||||
}
|
||||
|
||||
// Methods to be overwrite
|
||||
async configLoad() { }
|
||||
async preLoad() { }
|
||||
async load(preLoadData) { }
|
||||
async posLoad(loadData) { }
|
||||
}
|
||||
@@ -0,0 +1,145 @@
|
||||
import { api } from 'dicomweb-client';
|
||||
import DICOMWeb from '../../../DICOMWeb/';
|
||||
import RetrieveMetadataLoader from './retrieveMetadataLoader';
|
||||
import { sortStudySeries, sortingCriteria } from '../../sortStudy';
|
||||
import getSeriesInfo from '../../getSeriesInfo';
|
||||
import {
|
||||
createStudyFromSOPInstanceList,
|
||||
addInstancesToStudy,
|
||||
} from './studyInstanceHelpers';
|
||||
|
||||
/**
|
||||
* Map seriesList to an array of seriesInstanceUid
|
||||
* @param {Arrays} seriesList list of Series Instance UIDs
|
||||
* @returns {Arrays} A list of Series Instance UIDs
|
||||
*/
|
||||
function mapStudySeries(seriesList) {
|
||||
return seriesList.map(series => getSeriesInfo(series).seriesInstanceUid);
|
||||
}
|
||||
|
||||
function attachSeriesLoader(server, study, seriesLoader) {
|
||||
study.seriesLoader = Object.freeze({
|
||||
hasNext() {
|
||||
return seriesLoader.hasNext();
|
||||
},
|
||||
async next() {
|
||||
const series = await seriesLoader.next();
|
||||
await addInstancesToStudy(server, study, series.sopInstances);
|
||||
return study.seriesMap[series.seriesInstanceUID];
|
||||
},
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Creates an immutable series loader object which loads each series sequentially using the iterator interface
|
||||
* @param {DICOMWebClient} dicomWebClient The DICOMWebClient instance to be used for series load
|
||||
* @param {string} studyInstanceUID The Study Instance UID from which series will be loaded
|
||||
* @param {Array} seriesInstanceUIDList A list of Series Instance UIDs
|
||||
* @returns {Object} Returns an object which supports loading of instances from each of given Series Instance UID
|
||||
*/
|
||||
function makeSeriesAsyncLoader(
|
||||
dicomWebClient,
|
||||
studyInstanceUID,
|
||||
seriesInstanceUIDList
|
||||
) {
|
||||
return Object.freeze({
|
||||
hasNext() {
|
||||
return seriesInstanceUIDList.length > 0;
|
||||
},
|
||||
async next() {
|
||||
const seriesInstanceUID = seriesInstanceUIDList.shift();
|
||||
const sopInstances = await dicomWebClient.retrieveSeriesMetadata({
|
||||
studyInstanceUID,
|
||||
seriesInstanceUID,
|
||||
});
|
||||
return { studyInstanceUID, seriesInstanceUID, sopInstances };
|
||||
},
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Class for async load of study metadata.
|
||||
* It inherits from RetrieveMetadataLoader
|
||||
*
|
||||
* It loads the one series and then append to seriesLoader the others to be consumed/loaded
|
||||
*/
|
||||
export default class RetrieveMetadataLoaderAsync extends RetrieveMetadataLoader {
|
||||
configLoad() {
|
||||
const { server } = this;
|
||||
|
||||
const client = new api.DICOMwebClient({
|
||||
url: server.qidoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
});
|
||||
|
||||
this.client = client;
|
||||
}
|
||||
|
||||
/**
|
||||
* @returns {Array} Array of preLoaders. To be consumed as queue
|
||||
*/
|
||||
*getPreLoaders() {
|
||||
const preLoaders = [];
|
||||
const {
|
||||
studyInstanceUID,
|
||||
filters: { seriesInstanceUID } = {},
|
||||
client,
|
||||
} = this;
|
||||
|
||||
if (seriesInstanceUID) {
|
||||
const options = {
|
||||
studyInstanceUID,
|
||||
queryParams: { SeriesInstanceUID: seriesInstanceUID },
|
||||
};
|
||||
preLoaders.push(client.searchForSeries.bind(client, options));
|
||||
}
|
||||
// Fallback preloader
|
||||
preLoaders.push(client.searchForSeries.bind(client, { studyInstanceUID }));
|
||||
|
||||
yield* preLoaders;
|
||||
}
|
||||
|
||||
async preLoad() {
|
||||
const preLoaders = this.getPreLoaders();
|
||||
const result = await this.runLoaders(preLoaders);
|
||||
|
||||
const seriesSorted = sortStudySeries(
|
||||
result,
|
||||
sortingCriteria.seriesSortCriteria.seriesInfoSortingCriteria
|
||||
);
|
||||
const seriesInstanceUidsMap = mapStudySeries(seriesSorted);
|
||||
|
||||
return seriesInstanceUidsMap;
|
||||
}
|
||||
|
||||
async load(preLoadData) {
|
||||
const { client, studyInstanceUID } = this;
|
||||
|
||||
const seriesAsyncLoader = makeSeriesAsyncLoader(
|
||||
client,
|
||||
studyInstanceUID,
|
||||
preLoadData
|
||||
);
|
||||
|
||||
const firstSeries = await seriesAsyncLoader.next();
|
||||
|
||||
return {
|
||||
sopInstances: firstSeries.sopInstances,
|
||||
asyncLoader: seriesAsyncLoader,
|
||||
};
|
||||
}
|
||||
|
||||
async posLoad(loadData) {
|
||||
const { server } = this;
|
||||
|
||||
const { sopInstances, asyncLoader } = loadData;
|
||||
|
||||
const study = await createStudyFromSOPInstanceList(server, sopInstances);
|
||||
|
||||
if (asyncLoader.hasNext()) {
|
||||
attachSeriesLoader(server, study, asyncLoader);
|
||||
}
|
||||
|
||||
return study;
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,76 @@
|
||||
import { api } from 'dicomweb-client';
|
||||
import DICOMWeb from '../../../DICOMWeb/';
|
||||
import { createStudyFromSOPInstanceList } from './studyInstanceHelpers';
|
||||
import RetrieveMetadataLoader from './retrieveMetadataLoader';
|
||||
|
||||
/**
|
||||
* Class for sync load of study metadata.
|
||||
* It inherits from RetrieveMetadataLoader
|
||||
*
|
||||
* A list of loaders (getLoaders) can be created so, it will be applied a fallback load strategy.
|
||||
* I.e Retrieve metadata using all loaders possibilities.
|
||||
*/
|
||||
export default class RetrieveMetadataLoaderSync extends RetrieveMetadataLoader {
|
||||
getOptions() {
|
||||
const { studyInstanceUID, filters } = this;
|
||||
|
||||
const options = {
|
||||
studyInstanceUID,
|
||||
};
|
||||
|
||||
const { seriesInstanceUID } = filters;
|
||||
if (seriesInstanceUID) {
|
||||
options['seriesInstanceUID'] = seriesInstanceUID;
|
||||
}
|
||||
|
||||
return options;
|
||||
}
|
||||
|
||||
/**
|
||||
* @returns {Array} Array of loaders. To be consumed as queue
|
||||
*/
|
||||
*getLoaders() {
|
||||
const loaders = [];
|
||||
const {
|
||||
studyInstanceUID,
|
||||
filters: { seriesInstanceUID } = {},
|
||||
client,
|
||||
} = this;
|
||||
|
||||
if (seriesInstanceUID) {
|
||||
loaders.push(
|
||||
client.retrieveSeriesMetadata.bind(client, {
|
||||
studyInstanceUID,
|
||||
seriesInstanceUID,
|
||||
})
|
||||
);
|
||||
}
|
||||
|
||||
loaders.push(
|
||||
client.retrieveStudyMetadata.bind(client, { studyInstanceUID })
|
||||
);
|
||||
|
||||
yield* loaders;
|
||||
}
|
||||
|
||||
configLoad() {
|
||||
const { server } = this;
|
||||
const client = new api.DICOMwebClient({
|
||||
url: server.wadoRoot,
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
});
|
||||
|
||||
this.client = client;
|
||||
}
|
||||
|
||||
async load(preLoadData) {
|
||||
const loaders = this.getLoaders();
|
||||
const result = this.runLoaders(loaders);
|
||||
return result;
|
||||
}
|
||||
|
||||
async posLoad(loadData) {
|
||||
const { server } = this;
|
||||
return createStudyFromSOPInstanceList(server, loadData);
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,413 @@
|
||||
import DICOMWeb from '../../../DICOMWeb';
|
||||
|
||||
const WADOProxy = {
|
||||
convertURL: (url, server) => {
|
||||
// TODO: Remove all WADOProxy stuff from this file
|
||||
return url;
|
||||
},
|
||||
};
|
||||
function parseFloatArray(obj) {
|
||||
const result = [];
|
||||
|
||||
if (!obj) {
|
||||
return result;
|
||||
}
|
||||
|
||||
const objs = obj.split('\\');
|
||||
for (let i = 0; i < objs.length; i++) {
|
||||
result.push(parseFloat(objs[i]));
|
||||
}
|
||||
|
||||
return result;
|
||||
}
|
||||
|
||||
/**
|
||||
* Create a plain JS object that describes a study (a study descriptor object)
|
||||
* @param {Object} server Object with server configuration parameters
|
||||
* @param {Object} aSopInstance a SOP Instance from which study information will be added
|
||||
*/
|
||||
function createStudy(server, aSopInstance) {
|
||||
// TODO: Pass a reference ID to the server instead of including the URLs here
|
||||
return {
|
||||
seriesList: [],
|
||||
seriesMap: Object.create(null),
|
||||
seriesLoader: null,
|
||||
wadoUriRoot: server.wadoUriRoot,
|
||||
wadoRoot: server.wadoRoot,
|
||||
qidoRoot: server.qidoRoot,
|
||||
patientName: DICOMWeb.getName(aSopInstance['00100010']),
|
||||
patientId: DICOMWeb.getString(aSopInstance['00100020']),
|
||||
patientAge: DICOMWeb.getNumber(aSopInstance['00101010']),
|
||||
patientSize: DICOMWeb.getNumber(aSopInstance['00101020']),
|
||||
patientWeight: DICOMWeb.getNumber(aSopInstance['00101030']),
|
||||
accessionNumber: DICOMWeb.getString(aSopInstance['00080050']),
|
||||
studyDate: DICOMWeb.getString(aSopInstance['00080020']),
|
||||
modalities: DICOMWeb.getString(aSopInstance['00080061']),
|
||||
studyDescription: DICOMWeb.getString(aSopInstance['00081030']),
|
||||
imageCount: DICOMWeb.getString(aSopInstance['00201208']),
|
||||
studyInstanceUid: DICOMWeb.getString(aSopInstance['0020000D']),
|
||||
institutionName: DICOMWeb.getString(aSopInstance['00080080']),
|
||||
};
|
||||
}
|
||||
|
||||
/** Returns a WADO url for an instance
|
||||
*
|
||||
* @param studyInstanceUid
|
||||
* @param seriesInstanceUid
|
||||
* @param sopInstanceUid
|
||||
* @returns {string}
|
||||
*/
|
||||
function buildInstanceWadoUrl(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
) {
|
||||
// TODO: This can be removed, since DICOMWebClient has the same function. Not urgent, though
|
||||
const params = [];
|
||||
|
||||
params.push('requestType=WADO');
|
||||
params.push(`studyUID=${studyInstanceUid}`);
|
||||
params.push(`seriesUID=${seriesInstanceUid}`);
|
||||
params.push(`objectUID=${sopInstanceUid}`);
|
||||
params.push('contentType=application/dicom');
|
||||
params.push('transferSyntax=*');
|
||||
|
||||
const paramString = params.join('&');
|
||||
|
||||
return `${server.wadoUriRoot}?${paramString}`;
|
||||
}
|
||||
|
||||
function buildInstanceWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
) {
|
||||
return `${server.wadoRoot}/studies/${studyInstanceUid}/series/${seriesInstanceUid}/instances/${sopInstanceUid}`;
|
||||
}
|
||||
|
||||
function buildInstanceFrameWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid,
|
||||
frame
|
||||
) {
|
||||
const baseWadoRsUri = buildInstanceWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
);
|
||||
frame = frame != null || 1;
|
||||
|
||||
return `${baseWadoRsUri}/frames/${frame}`;
|
||||
}
|
||||
|
||||
function getFrameIncrementPointer(element) {
|
||||
const frameIncrementPointerNames = {
|
||||
'00181065': 'frameTimeVector',
|
||||
'00181063': 'frameTime',
|
||||
};
|
||||
|
||||
if (!element || !element.Value || !element.Value.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
const value = element.Value[0];
|
||||
return frameIncrementPointerNames[value];
|
||||
}
|
||||
|
||||
function getRadiopharmaceuticalInfo(instance) {
|
||||
const modality = DICOMWeb.getString(instance['00080060']);
|
||||
|
||||
if (modality !== 'PT') {
|
||||
return;
|
||||
}
|
||||
|
||||
const radiopharmaceuticalInfo = instance['00540016'];
|
||||
if (
|
||||
radiopharmaceuticalInfo === undefined ||
|
||||
!radiopharmaceuticalInfo.Value ||
|
||||
!radiopharmaceuticalInfo.Value.length
|
||||
) {
|
||||
return;
|
||||
}
|
||||
|
||||
const firstPetRadiopharmaceuticalInfo = radiopharmaceuticalInfo.Value[0];
|
||||
return {
|
||||
radiopharmaceuticalStartTime: DICOMWeb.getString(
|
||||
firstPetRadiopharmaceuticalInfo['00181072']
|
||||
),
|
||||
radionuclideTotalDose: DICOMWeb.getNumber(
|
||||
firstPetRadiopharmaceuticalInfo['00181074']
|
||||
),
|
||||
radionuclideHalfLife: DICOMWeb.getNumber(
|
||||
firstPetRadiopharmaceuticalInfo['00181075']
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
* Parses the SourceImageSequence, if it exists, in order
|
||||
* to return a ReferenceSOPInstanceUID. The ReferenceSOPInstanceUID
|
||||
* is used to refer to this image in any accompanying DICOM-SR documents.
|
||||
*
|
||||
* @param instance
|
||||
* @returns {String} The ReferenceSOPInstanceUID
|
||||
*/
|
||||
function getSourceImageInstanceUid(instance) {
|
||||
// TODO= Parse the whole Source Image Sequence
|
||||
// This is a really poor workaround for now.
|
||||
// Later we should probably parse the whole sequence.
|
||||
var SourceImageSequence = instance['00082112'];
|
||||
if (
|
||||
SourceImageSequence &&
|
||||
SourceImageSequence.Value &&
|
||||
SourceImageSequence.Value.length &&
|
||||
SourceImageSequence.Value[0]['00081155'].Value
|
||||
) {
|
||||
return SourceImageSequence.Value[0]['00081155'].Value[0];
|
||||
}
|
||||
}
|
||||
|
||||
async function makeSOPInstance(server, study, instance) {
|
||||
const { studyInstanceUid } = study;
|
||||
const seriesInstanceUid = DICOMWeb.getString(instance['0020000E']);
|
||||
let series = study.seriesMap[seriesInstanceUid];
|
||||
|
||||
if (!series) {
|
||||
series = {
|
||||
seriesInstanceUid,
|
||||
seriesDescription: DICOMWeb.getString(instance['0008103E']),
|
||||
modality: DICOMWeb.getString(instance['00080060']),
|
||||
seriesNumber: DICOMWeb.getNumber(instance['00200011']),
|
||||
seriesDate: DICOMWeb.getString(instance['00080021']),
|
||||
seriesTime: DICOMWeb.getString(instance['00080031']),
|
||||
instances: [],
|
||||
};
|
||||
study.seriesMap[seriesInstanceUid] = series;
|
||||
study.seriesList.push(series);
|
||||
}
|
||||
|
||||
const sopInstanceUid = DICOMWeb.getString(instance['00080018']);
|
||||
const wadouri = buildInstanceWadoUrl(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
);
|
||||
const baseWadoRsUri = buildInstanceWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
);
|
||||
const wadorsuri = buildInstanceFrameWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
);
|
||||
|
||||
const sopInstance = {
|
||||
imageType: DICOMWeb.getString(instance['00080008']),
|
||||
sopClassUid: DICOMWeb.getString(instance['00080016']),
|
||||
modality: DICOMWeb.getString(instance['00080060']),
|
||||
sopInstanceUid,
|
||||
instanceNumber: DICOMWeb.getNumber(instance['00200013']),
|
||||
imagePositionPatient: DICOMWeb.getString(instance['00200032']),
|
||||
imageOrientationPatient: DICOMWeb.getString(instance['00200037']),
|
||||
frameOfReferenceUID: DICOMWeb.getString(instance['00200052']),
|
||||
sliceLocation: DICOMWeb.getNumber(instance['00201041']),
|
||||
samplesPerPixel: DICOMWeb.getNumber(instance['00280002']),
|
||||
photometricInterpretation: DICOMWeb.getString(instance['00280004']),
|
||||
planarConfiguration: DICOMWeb.getNumber(instance['00280006']),
|
||||
rows: DICOMWeb.getNumber(instance['00280010']),
|
||||
columns: DICOMWeb.getNumber(instance['00280011']),
|
||||
pixelSpacing: DICOMWeb.getString(instance['00280030']),
|
||||
pixelAspectRatio: DICOMWeb.getString(instance['00280034']),
|
||||
bitsAllocated: DICOMWeb.getNumber(instance['00280100']),
|
||||
bitsStored: DICOMWeb.getNumber(instance['00280101']),
|
||||
highBit: DICOMWeb.getNumber(instance['00280102']),
|
||||
pixelRepresentation: DICOMWeb.getNumber(instance['00280103']),
|
||||
smallestPixelValue: DICOMWeb.getNumber(instance['00280106']),
|
||||
largestPixelValue: DICOMWeb.getNumber(instance['00280107']),
|
||||
windowCenter: DICOMWeb.getString(instance['00281050']),
|
||||
windowWidth: DICOMWeb.getString(instance['00281051']),
|
||||
rescaleIntercept: DICOMWeb.getNumber(instance['00281052']),
|
||||
rescaleSlope: DICOMWeb.getNumber(instance['00281053']),
|
||||
rescaleType: DICOMWeb.getNumber(instance['00281054']),
|
||||
sourceImageInstanceUid: getSourceImageInstanceUid(instance),
|
||||
laterality: DICOMWeb.getString(instance['00200062']),
|
||||
viewPosition: DICOMWeb.getString(instance['00185101']),
|
||||
acquisitionDateTime: DICOMWeb.getString(instance['0008002A']),
|
||||
numberOfFrames: DICOMWeb.getNumber(instance['00280008']),
|
||||
frameIncrementPointer: getFrameIncrementPointer(instance['00280009']),
|
||||
frameTime: DICOMWeb.getNumber(instance['00181063']),
|
||||
frameTimeVector: parseFloatArray(DICOMWeb.getString(instance['00181065'])),
|
||||
sliceThickness: DICOMWeb.getNumber(instance['00180050']),
|
||||
spacingBetweenSlices: DICOMWeb.getString(instance['00180088']),
|
||||
lossyImageCompression: DICOMWeb.getString(instance['00282110']),
|
||||
derivationDescription: DICOMWeb.getString(instance['00282111']),
|
||||
lossyImageCompressionRatio: DICOMWeb.getString(instance['00282112']),
|
||||
lossyImageCompressionMethod: DICOMWeb.getString(instance['00282114']),
|
||||
echoNumber: DICOMWeb.getString(instance['00180086']),
|
||||
contrastBolusAgent: DICOMWeb.getString(instance['00180010']),
|
||||
radiopharmaceuticalInfo: getRadiopharmaceuticalInfo(instance),
|
||||
baseWadoRsUri: baseWadoRsUri,
|
||||
wadouri: WADOProxy.convertURL(wadouri, server),
|
||||
wadorsuri: WADOProxy.convertURL(wadorsuri, server),
|
||||
wadoRoot: server.wadoRoot,
|
||||
imageRendering: server.imageRendering,
|
||||
thumbnailRendering: server.thumbnailRendering,
|
||||
};
|
||||
|
||||
// Get additional information if the instance uses "PALETTE COLOR" photometric interpretation
|
||||
if (sopInstance.photometricInterpretation === 'PALETTE COLOR') {
|
||||
const redPaletteColorLookupTableDescriptor = parseFloatArray(
|
||||
DICOMWeb.getString(instance['00281101'])
|
||||
);
|
||||
const greenPaletteColorLookupTableDescriptor = parseFloatArray(
|
||||
DICOMWeb.getString(instance['00281102'])
|
||||
);
|
||||
const bluePaletteColorLookupTableDescriptor = parseFloatArray(
|
||||
DICOMWeb.getString(instance['00281103'])
|
||||
);
|
||||
const palettes = await getPaletteColors(
|
||||
server,
|
||||
instance,
|
||||
redPaletteColorLookupTableDescriptor
|
||||
);
|
||||
|
||||
if (palettes) {
|
||||
if (palettes.uid) {
|
||||
sopInstance.paletteColorLookupTableUID = palettes.uid;
|
||||
}
|
||||
|
||||
sopInstance.redPaletteColorLookupTableData = palettes.red;
|
||||
sopInstance.greenPaletteColorLookupTableData = palettes.green;
|
||||
sopInstance.bluePaletteColorLookupTableData = palettes.blue;
|
||||
sopInstance.redPaletteColorLookupTableDescriptor = redPaletteColorLookupTableDescriptor;
|
||||
sopInstance.greenPaletteColorLookupTableDescriptor = greenPaletteColorLookupTableDescriptor;
|
||||
sopInstance.bluePaletteColorLookupTableDescriptor = bluePaletteColorLookupTableDescriptor;
|
||||
}
|
||||
}
|
||||
|
||||
series.instances.push(sopInstance);
|
||||
return sopInstance;
|
||||
}
|
||||
|
||||
function getPaletteColor(server, instance, tag, lutDescriptor) {
|
||||
const numLutEntries = lutDescriptor[0];
|
||||
const bits = lutDescriptor[2];
|
||||
|
||||
let uri = WADOProxy.convertURL(instance[tag].BulkDataURI, server);
|
||||
|
||||
// TODO: Workaround for dcm4chee behind SSL-terminating proxy returning
|
||||
// incorrect bulk data URIs
|
||||
if (server.wadoRoot.indexOf('https') === 0 && !uri.includes('https')) {
|
||||
uri = uri.replace('http', 'https');
|
||||
}
|
||||
|
||||
const config = {
|
||||
url: server.wadoRoot, //BulkDataURI is absolute, so this isn't used
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
};
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
const options = {
|
||||
BulkDataURI: uri,
|
||||
};
|
||||
|
||||
const readUInt16 = (byteArray, position) => {
|
||||
return byteArray[position] + byteArray[position + 1] * 256;
|
||||
};
|
||||
|
||||
const arrayBufferToPaletteColorLUT = result => {
|
||||
const arraybuffer = result[0];
|
||||
const byteArray = new Uint8Array(arraybuffer);
|
||||
const lut = [];
|
||||
|
||||
for (let i = 0; i < numLutEntries; i++) {
|
||||
if (bits === 16) {
|
||||
lut[i] = readUInt16(byteArray, i * 2);
|
||||
} else {
|
||||
lut[i] = byteArray[i];
|
||||
}
|
||||
}
|
||||
|
||||
return lut;
|
||||
};
|
||||
|
||||
return dicomWeb.retrieveBulkData(options).then(arrayBufferToPaletteColorLUT);
|
||||
}
|
||||
|
||||
/**
|
||||
* Fetch palette colors for instances with "PALETTE COLOR" photometricInterpretation.
|
||||
*
|
||||
* @param server {Object} Current server;
|
||||
* @param instance {Object} The retrieved instance metadata;
|
||||
* @returns {String} The ReferenceSOPInstanceUID
|
||||
*/
|
||||
async function getPaletteColors(server, instance, lutDescriptor) {
|
||||
let paletteUID = DICOMWeb.getString(instance['00281199']);
|
||||
|
||||
return new Promise((resolve, reject) => {
|
||||
let entry;
|
||||
if (paletteColorCache.isValidUID(paletteUID)) {
|
||||
entry = paletteColorCache.get(paletteUID);
|
||||
|
||||
if (entry) {
|
||||
return resolve(entry);
|
||||
}
|
||||
}
|
||||
|
||||
// no entry in cache... Fetch remote data.
|
||||
const r = getPaletteColor(server, instance, '00281201', lutDescriptor);
|
||||
const g = getPaletteColor(server, instance, '00281202', lutDescriptor);
|
||||
const b = getPaletteColor(server, instance, '00281203', lutDescriptor);
|
||||
|
||||
const promises = [r, g, b];
|
||||
|
||||
Promise.all(promises).then(args => {
|
||||
entry = {
|
||||
red: args[0],
|
||||
green: args[1],
|
||||
blue: args[2],
|
||||
};
|
||||
|
||||
// when paletteUID is present, the entry can be cached...
|
||||
entry.uid = paletteUID;
|
||||
paletteColorCache.add(entry);
|
||||
|
||||
resolve(entry);
|
||||
});
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Add a list of SOP Instances to a given study object descriptor
|
||||
* @param {Object} server Object with server configuration parameters
|
||||
* @param {Object} study The study descriptor to which the given SOP instances will be added
|
||||
* @param {Array} sopInstanceList A list of SOP instance objects
|
||||
*/
|
||||
async function addInstancesToStudy(server, study, sopInstanceList) {
|
||||
return Promise.all(
|
||||
sopInstanceList.map(function(sopInstance) {
|
||||
return makeSOPInstance(server, study, sopInstance);
|
||||
})
|
||||
);
|
||||
}
|
||||
|
||||
const createStudyFromSOPInstanceList = async (server, sopInstanceList) => {
|
||||
if (Array.isArray(sopInstanceList) && sopInstanceList.length > 0) {
|
||||
const firstSopInstance = sopInstanceList[0];
|
||||
const study = createStudy(server, firstSopInstance);
|
||||
await addInstancesToStudy(server, study, sopInstanceList);
|
||||
return study;
|
||||
}
|
||||
throw new Error('Failed to create study out of provided SOP instance list');
|
||||
};
|
||||
|
||||
export { createStudyFromSOPInstanceList, addInstancesToStudy };
|
||||
@@ -1,17 +1,96 @@
|
||||
import getSeriesInfo from './getSeriesInfo';
|
||||
|
||||
/**
|
||||
* Sorts the series and instances inside a study instance by their series
|
||||
* and instance numbers in ascending order.
|
||||
* Series sorting criteria: series considered low priority are moved to the end
|
||||
* of the list and series number is used to break ties
|
||||
* @param {Object} firstSeries
|
||||
* @param {Object} secondSeries
|
||||
*/
|
||||
function seriesInfoSortingCriteria(firstSeries, secondSeries) {
|
||||
const a = getSeriesInfo(firstSeries);
|
||||
const b = getSeriesInfo(secondSeries);
|
||||
if (!a.isLowPriority && b.isLowPriority) {
|
||||
return -1;
|
||||
}
|
||||
if (a.isLowPriority && !b.isLowPriority) {
|
||||
return 1;
|
||||
}
|
||||
return a.seriesNumber - b.seriesNumber;
|
||||
}
|
||||
|
||||
const seriesSortCriteria = {
|
||||
default: (a, b) => a.seriesNumber - b.seriesNumber,
|
||||
seriesInfoSortingCriteria,
|
||||
};
|
||||
|
||||
const instancesSortCriteria = {
|
||||
default: (a, b) => a.instanceNumber - b.instanceNumber,
|
||||
};
|
||||
|
||||
const sortingCriteria = {
|
||||
seriesSortCriteria,
|
||||
instancesSortCriteria,
|
||||
};
|
||||
|
||||
/**
|
||||
* Sorts given seriesList (given param is modified)
|
||||
* The default criteria is based on series number in ascending order.
|
||||
*
|
||||
* @param {Array} seriesList List of series
|
||||
* @param {function} seriesSortingCriteria method for sorting
|
||||
* @returns {Array} sorted seriesList object
|
||||
*/
|
||||
const sortStudySeries = (
|
||||
seriesList,
|
||||
seriesSortingCriteria = seriesSortCriteria.default
|
||||
) => {
|
||||
return seriesList.sort(seriesSortingCriteria);
|
||||
};
|
||||
|
||||
/**
|
||||
* Sorts given instancesList (given param is modified)
|
||||
* The default criteria is based on instance number in ascending order.
|
||||
*
|
||||
* @param {Array} instancesList List of series
|
||||
* @param {function} instancesSortingCriteria method for sorting
|
||||
* @returns {Array} sorted instancesList object
|
||||
*/
|
||||
const sortStudyInstances = (
|
||||
instancesList,
|
||||
instancesSortingCriteria = instancesSortCriteria.default
|
||||
) => {
|
||||
return instancesList.sort(instancesSortingCriteria);
|
||||
};
|
||||
|
||||
/**
|
||||
* Sorts the series and instances (by default) inside a study instance based on sortingCriteria (given param is modified)
|
||||
* The default criteria is based on series and instance numbers in ascending order.
|
||||
*
|
||||
* @param {Object} study The study instance
|
||||
* @param {boolean} [deepSort = true] to sort instance also
|
||||
* @param {function} [seriesSortingCriteria = seriesSortCriteria.default] method for sorting series
|
||||
* @param {function} [instancesSortingCriteria = instancesSortCriteria.default] method for sorting instances
|
||||
* @returns {Object} sorted study object
|
||||
*/
|
||||
export default function sortStudy(study) {
|
||||
export default function sortStudy(
|
||||
study,
|
||||
deepSort = true,
|
||||
seriesSortingCriteria = seriesSortCriteria.default,
|
||||
instancesSortingCriteria = instancesSortCriteria.default
|
||||
) {
|
||||
if (!study || !study.seriesList) {
|
||||
throw new Error('Insufficient study data was provided to sortStudy');
|
||||
}
|
||||
|
||||
study.seriesList.sort((a, b) => a.seriesNumber - b.seriesNumber);
|
||||
sortStudySeries(study.seriesList, seriesSortingCriteria);
|
||||
|
||||
study.seriesList.forEach(series => {
|
||||
series.instances.sort((a, b) => a.instanceNumber - b.instanceNumber);
|
||||
});
|
||||
if (deepSort) {
|
||||
study.seriesList.forEach(series => {
|
||||
sortStudyInstances(series.instances, instancesSortingCriteria);
|
||||
});
|
||||
}
|
||||
|
||||
return study;
|
||||
}
|
||||
|
||||
export { sortStudySeries, sortStudyInstances, sortingCriteria };
|
||||
@@ -0,0 +1,413 @@
|
||||
import DICOMWeb from '../DICOMWeb/';
|
||||
|
||||
const WADOProxy = {
|
||||
convertURL: (url, server) => {
|
||||
// TODO: Remove all WADOProxy stuff from this file
|
||||
return url;
|
||||
},
|
||||
};
|
||||
function parseFloatArray(obj) {
|
||||
const result = [];
|
||||
|
||||
if (!obj) {
|
||||
return result;
|
||||
}
|
||||
|
||||
const objs = obj.split('\\');
|
||||
for (let i = 0; i < objs.length; i++) {
|
||||
result.push(parseFloat(objs[i]));
|
||||
}
|
||||
|
||||
return result;
|
||||
}
|
||||
|
||||
/**
|
||||
* Create a plain JS object that describes a study (a study descriptor object)
|
||||
* @param {Object} server Object with server configuration parameters
|
||||
* @param {Object} aSopInstance a SOP Instance from which study information will be added
|
||||
*/
|
||||
function createStudy(server, aSopInstance) {
|
||||
// TODO: Pass a reference ID to the server instead of including the URLs here
|
||||
return {
|
||||
seriesList: [],
|
||||
seriesMap: Object.create(null),
|
||||
seriesLoader: null,
|
||||
wadoUriRoot: server.wadoUriRoot,
|
||||
wadoRoot: server.wadoRoot,
|
||||
qidoRoot: server.qidoRoot,
|
||||
patientName: DICOMWeb.getName(aSopInstance['00100010']),
|
||||
patientId: DICOMWeb.getString(aSopInstance['00100020']),
|
||||
patientAge: DICOMWeb.getNumber(aSopInstance['00101010']),
|
||||
patientSize: DICOMWeb.getNumber(aSopInstance['00101020']),
|
||||
patientWeight: DICOMWeb.getNumber(aSopInstance['00101030']),
|
||||
accessionNumber: DICOMWeb.getString(aSopInstance['00080050']),
|
||||
studyDate: DICOMWeb.getString(aSopInstance['00080020']),
|
||||
modalities: DICOMWeb.getString(aSopInstance['00080061']),
|
||||
studyDescription: DICOMWeb.getString(aSopInstance['00081030']),
|
||||
imageCount: DICOMWeb.getString(aSopInstance['00201208']),
|
||||
studyInstanceUid: DICOMWeb.getString(aSopInstance['0020000D']),
|
||||
institutionName: DICOMWeb.getString(aSopInstance['00080080']),
|
||||
};
|
||||
}
|
||||
|
||||
/** Returns a WADO url for an instance
|
||||
*
|
||||
* @param studyInstanceUid
|
||||
* @param seriesInstanceUid
|
||||
* @param sopInstanceUid
|
||||
* @returns {string}
|
||||
*/
|
||||
function buildInstanceWadoUrl(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
) {
|
||||
// TODO: This can be removed, since DICOMWebClient has the same function. Not urgent, though
|
||||
const params = [];
|
||||
|
||||
params.push('requestType=WADO');
|
||||
params.push(`studyUID=${studyInstanceUid}`);
|
||||
params.push(`seriesUID=${seriesInstanceUid}`);
|
||||
params.push(`objectUID=${sopInstanceUid}`);
|
||||
params.push('contentType=application/dicom');
|
||||
params.push('transferSyntax=*');
|
||||
|
||||
const paramString = params.join('&');
|
||||
|
||||
return `${server.wadoUriRoot}?${paramString}`;
|
||||
}
|
||||
|
||||
function buildInstanceWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
) {
|
||||
return `${server.wadoRoot}/studies/${studyInstanceUid}/series/${seriesInstanceUid}/instances/${sopInstanceUid}`;
|
||||
}
|
||||
|
||||
function buildInstanceFrameWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid,
|
||||
frame
|
||||
) {
|
||||
const baseWadoRsUri = buildInstanceWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
);
|
||||
frame = frame != null || 1;
|
||||
|
||||
return `${baseWadoRsUri}/frames/${frame}`;
|
||||
}
|
||||
|
||||
function getFrameIncrementPointer(element) {
|
||||
const frameIncrementPointerNames = {
|
||||
'00181065': 'frameTimeVector',
|
||||
'00181063': 'frameTime',
|
||||
};
|
||||
|
||||
if (!element || !element.Value || !element.Value.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
const value = element.Value[0];
|
||||
return frameIncrementPointerNames[value];
|
||||
}
|
||||
|
||||
function getRadiopharmaceuticalInfo(instance) {
|
||||
const modality = DICOMWeb.getString(instance['00080060']);
|
||||
|
||||
if (modality !== 'PT') {
|
||||
return;
|
||||
}
|
||||
|
||||
const radiopharmaceuticalInfo = instance['00540016'];
|
||||
if (
|
||||
radiopharmaceuticalInfo === undefined ||
|
||||
!radiopharmaceuticalInfo.Value ||
|
||||
!radiopharmaceuticalInfo.Value.length
|
||||
) {
|
||||
return;
|
||||
}
|
||||
|
||||
const firstPetRadiopharmaceuticalInfo = radiopharmaceuticalInfo.Value[0];
|
||||
return {
|
||||
radiopharmaceuticalStartTime: DICOMWeb.getString(
|
||||
firstPetRadiopharmaceuticalInfo['00181072']
|
||||
),
|
||||
radionuclideTotalDose: DICOMWeb.getNumber(
|
||||
firstPetRadiopharmaceuticalInfo['00181074']
|
||||
),
|
||||
radionuclideHalfLife: DICOMWeb.getNumber(
|
||||
firstPetRadiopharmaceuticalInfo['00181075']
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
* Parses the SourceImageSequence, if it exists, in order
|
||||
* to return a ReferenceSOPInstanceUID. The ReferenceSOPInstanceUID
|
||||
* is used to refer to this image in any accompanying DICOM-SR documents.
|
||||
*
|
||||
* @param instance
|
||||
* @returns {String} The ReferenceSOPInstanceUID
|
||||
*/
|
||||
function getSourceImageInstanceUid(instance) {
|
||||
// TODO= Parse the whole Source Image Sequence
|
||||
// This is a really poor workaround for now.
|
||||
// Later we should probably parse the whole sequence.
|
||||
var SourceImageSequence = instance['00082112'];
|
||||
if (
|
||||
SourceImageSequence &&
|
||||
SourceImageSequence.Value &&
|
||||
SourceImageSequence.Value.length &&
|
||||
SourceImageSequence.Value[0]['00081155'].Value
|
||||
) {
|
||||
return SourceImageSequence.Value[0]['00081155'].Value[0];
|
||||
}
|
||||
}
|
||||
|
||||
async function makeSOPInstance(server, study, instance) {
|
||||
const { studyInstanceUid } = study;
|
||||
const seriesInstanceUid = DICOMWeb.getString(instance['0020000E']);
|
||||
let series = study.seriesMap[seriesInstanceUid];
|
||||
|
||||
if (!series) {
|
||||
series = {
|
||||
seriesInstanceUid,
|
||||
seriesDescription: DICOMWeb.getString(instance['0008103E']),
|
||||
modality: DICOMWeb.getString(instance['00080060']),
|
||||
seriesNumber: DICOMWeb.getNumber(instance['00200011']),
|
||||
seriesDate: DICOMWeb.getString(instance['00080021']),
|
||||
seriesTime: DICOMWeb.getString(instance['00080031']),
|
||||
instances: [],
|
||||
};
|
||||
study.seriesMap[seriesInstanceUid] = series;
|
||||
study.seriesList.push(series);
|
||||
}
|
||||
|
||||
const sopInstanceUid = DICOMWeb.getString(instance['00080018']);
|
||||
const wadouri = buildInstanceWadoUrl(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
);
|
||||
const baseWadoRsUri = buildInstanceWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
);
|
||||
const wadorsuri = buildInstanceFrameWadoRsUri(
|
||||
server,
|
||||
studyInstanceUid,
|
||||
seriesInstanceUid,
|
||||
sopInstanceUid
|
||||
);
|
||||
|
||||
const sopInstance = {
|
||||
imageType: DICOMWeb.getString(instance['00080008']),
|
||||
sopClassUid: DICOMWeb.getString(instance['00080016']),
|
||||
modality: DICOMWeb.getString(instance['00080060']),
|
||||
sopInstanceUid,
|
||||
instanceNumber: DICOMWeb.getNumber(instance['00200013']),
|
||||
imagePositionPatient: DICOMWeb.getString(instance['00200032']),
|
||||
imageOrientationPatient: DICOMWeb.getString(instance['00200037']),
|
||||
frameOfReferenceUID: DICOMWeb.getString(instance['00200052']),
|
||||
sliceLocation: DICOMWeb.getNumber(instance['00201041']),
|
||||
samplesPerPixel: DICOMWeb.getNumber(instance['00280002']),
|
||||
photometricInterpretation: DICOMWeb.getString(instance['00280004']),
|
||||
planarConfiguration: DICOMWeb.getNumber(instance['00280006']),
|
||||
rows: DICOMWeb.getNumber(instance['00280010']),
|
||||
columns: DICOMWeb.getNumber(instance['00280011']),
|
||||
pixelSpacing: DICOMWeb.getString(instance['00280030']),
|
||||
pixelAspectRatio: DICOMWeb.getString(instance['00280034']),
|
||||
bitsAllocated: DICOMWeb.getNumber(instance['00280100']),
|
||||
bitsStored: DICOMWeb.getNumber(instance['00280101']),
|
||||
highBit: DICOMWeb.getNumber(instance['00280102']),
|
||||
pixelRepresentation: DICOMWeb.getNumber(instance['00280103']),
|
||||
smallestPixelValue: DICOMWeb.getNumber(instance['00280106']),
|
||||
largestPixelValue: DICOMWeb.getNumber(instance['00280107']),
|
||||
windowCenter: DICOMWeb.getString(instance['00281050']),
|
||||
windowWidth: DICOMWeb.getString(instance['00281051']),
|
||||
rescaleIntercept: DICOMWeb.getNumber(instance['00281052']),
|
||||
rescaleSlope: DICOMWeb.getNumber(instance['00281053']),
|
||||
rescaleType: DICOMWeb.getNumber(instance['00281054']),
|
||||
sourceImageInstanceUid: getSourceImageInstanceUid(instance),
|
||||
laterality: DICOMWeb.getString(instance['00200062']),
|
||||
viewPosition: DICOMWeb.getString(instance['00185101']),
|
||||
acquisitionDateTime: DICOMWeb.getString(instance['0008002A']),
|
||||
numberOfFrames: DICOMWeb.getNumber(instance['00280008']),
|
||||
frameIncrementPointer: getFrameIncrementPointer(instance['00280009']),
|
||||
frameTime: DICOMWeb.getNumber(instance['00181063']),
|
||||
frameTimeVector: parseFloatArray(DICOMWeb.getString(instance['00181065'])),
|
||||
sliceThickness: DICOMWeb.getNumber(instance['00180050']),
|
||||
spacingBetweenSlices: DICOMWeb.getString(instance['00180088']),
|
||||
lossyImageCompression: DICOMWeb.getString(instance['00282110']),
|
||||
derivationDescription: DICOMWeb.getString(instance['00282111']),
|
||||
lossyImageCompressionRatio: DICOMWeb.getString(instance['00282112']),
|
||||
lossyImageCompressionMethod: DICOMWeb.getString(instance['00282114']),
|
||||
echoNumber: DICOMWeb.getString(instance['00180086']),
|
||||
contrastBolusAgent: DICOMWeb.getString(instance['00180010']),
|
||||
radiopharmaceuticalInfo: getRadiopharmaceuticalInfo(instance),
|
||||
baseWadoRsUri: baseWadoRsUri,
|
||||
wadouri: WADOProxy.convertURL(wadouri, server),
|
||||
wadorsuri: WADOProxy.convertURL(wadorsuri, server),
|
||||
wadoRoot: server.wadoRoot,
|
||||
imageRendering: server.imageRendering,
|
||||
thumbnailRendering: server.thumbnailRendering,
|
||||
};
|
||||
|
||||
// Get additional information if the instance uses "PALETTE COLOR" photometric interpretation
|
||||
if (sopInstance.photometricInterpretation === 'PALETTE COLOR') {
|
||||
const redPaletteColorLookupTableDescriptor = parseFloatArray(
|
||||
DICOMWeb.getString(instance['00281101'])
|
||||
);
|
||||
const greenPaletteColorLookupTableDescriptor = parseFloatArray(
|
||||
DICOMWeb.getString(instance['00281102'])
|
||||
);
|
||||
const bluePaletteColorLookupTableDescriptor = parseFloatArray(
|
||||
DICOMWeb.getString(instance['00281103'])
|
||||
);
|
||||
const palettes = await getPaletteColors(
|
||||
server,
|
||||
instance,
|
||||
redPaletteColorLookupTableDescriptor
|
||||
);
|
||||
|
||||
if (palettes) {
|
||||
if (palettes.uid) {
|
||||
sopInstance.paletteColorLookupTableUID = palettes.uid;
|
||||
}
|
||||
|
||||
sopInstance.redPaletteColorLookupTableData = palettes.red;
|
||||
sopInstance.greenPaletteColorLookupTableData = palettes.green;
|
||||
sopInstance.bluePaletteColorLookupTableData = palettes.blue;
|
||||
sopInstance.redPaletteColorLookupTableDescriptor = redPaletteColorLookupTableDescriptor;
|
||||
sopInstance.greenPaletteColorLookupTableDescriptor = greenPaletteColorLookupTableDescriptor;
|
||||
sopInstance.bluePaletteColorLookupTableDescriptor = bluePaletteColorLookupTableDescriptor;
|
||||
}
|
||||
}
|
||||
|
||||
series.instances.push(sopInstance);
|
||||
return sopInstance;
|
||||
}
|
||||
|
||||
function getPaletteColor(server, instance, tag, lutDescriptor) {
|
||||
const numLutEntries = lutDescriptor[0];
|
||||
const bits = lutDescriptor[2];
|
||||
|
||||
let uri = WADOProxy.convertURL(instance[tag].BulkDataURI, server);
|
||||
|
||||
// TODO: Workaround for dcm4chee behind SSL-terminating proxy returning
|
||||
// incorrect bulk data URIs
|
||||
if (server.wadoRoot.indexOf('https') === 0 && !uri.includes('https')) {
|
||||
uri = uri.replace('http', 'https');
|
||||
}
|
||||
|
||||
const config = {
|
||||
url: server.wadoRoot, //BulkDataURI is absolute, so this isn't used
|
||||
headers: DICOMWeb.getAuthorizationHeader(server),
|
||||
};
|
||||
const dicomWeb = new api.DICOMwebClient(config);
|
||||
const options = {
|
||||
BulkDataURI: uri,
|
||||
};
|
||||
|
||||
const readUInt16 = (byteArray, position) => {
|
||||
return byteArray[position] + byteArray[position + 1] * 256;
|
||||
};
|
||||
|
||||
const arrayBufferToPaletteColorLUT = result => {
|
||||
const arraybuffer = result[0];
|
||||
const byteArray = new Uint8Array(arraybuffer);
|
||||
const lut = [];
|
||||
|
||||
for (let i = 0; i < numLutEntries; i++) {
|
||||
if (bits === 16) {
|
||||
lut[i] = readUInt16(byteArray, i * 2);
|
||||
} else {
|
||||
lut[i] = byteArray[i];
|
||||
}
|
||||
}
|
||||
|
||||
return lut;
|
||||
};
|
||||
|
||||
return dicomWeb.retrieveBulkData(options).then(arrayBufferToPaletteColorLUT);
|
||||
}
|
||||
|
||||
/**
|
||||
* Fetch palette colors for instances with "PALETTE COLOR" photometricInterpretation.
|
||||
*
|
||||
* @param server {Object} Current server;
|
||||
* @param instance {Object} The retrieved instance metadata;
|
||||
* @returns {String} The ReferenceSOPInstanceUID
|
||||
*/
|
||||
async function getPaletteColors(server, instance, lutDescriptor) {
|
||||
let paletteUID = DICOMWeb.getString(instance['00281199']);
|
||||
|
||||
return new Promise((resolve, reject) => {
|
||||
let entry;
|
||||
if (paletteColorCache.isValidUID(paletteUID)) {
|
||||
entry = paletteColorCache.get(paletteUID);
|
||||
|
||||
if (entry) {
|
||||
return resolve(entry);
|
||||
}
|
||||
}
|
||||
|
||||
// no entry in cache... Fetch remote data.
|
||||
const r = getPaletteColor(server, instance, '00281201', lutDescriptor);
|
||||
const g = getPaletteColor(server, instance, '00281202', lutDescriptor);
|
||||
const b = getPaletteColor(server, instance, '00281203', lutDescriptor);
|
||||
|
||||
const promises = [r, g, b];
|
||||
|
||||
Promise.all(promises).then(args => {
|
||||
entry = {
|
||||
red: args[0],
|
||||
green: args[1],
|
||||
blue: args[2],
|
||||
};
|
||||
|
||||
// when paletteUID is present, the entry can be cached...
|
||||
entry.uid = paletteUID;
|
||||
paletteColorCache.add(entry);
|
||||
|
||||
resolve(entry);
|
||||
});
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Add a list of SOP Instances to a given study object descriptor
|
||||
* @param {Object} server Object with server configuration parameters
|
||||
* @param {Object} study The study descriptor to which the given SOP instances will be added
|
||||
* @param {Array} sopInstanceList A list of SOP instance objects
|
||||
*/
|
||||
async function addInstancesToStudy(server, study, sopInstanceList) {
|
||||
return Promise.all(
|
||||
sopInstanceList.map(function(sopInstance) {
|
||||
return makeSOPInstance(server, study, sopInstance);
|
||||
})
|
||||
);
|
||||
}
|
||||
|
||||
const createStudyFromSOPInstanceList = async (server, sopInstanceList) => {
|
||||
if (Array.isArray(sopInstanceList) && sopInstanceList.length > 0) {
|
||||
const firstSopInstance = sopInstanceList[0];
|
||||
const study = createStudy(server, firstSopInstance);
|
||||
await addInstancesToStudy(server, study, sopInstanceList);
|
||||
return study;
|
||||
}
|
||||
throw new Error('Failed to create study out of provided SOP instance list');
|
||||
};
|
||||
|
||||
export { createStudyFromSOPInstanceList, addInstancesToStudy };
|
||||
@@ -0,0 +1,22 @@
|
||||
/* Enabled JPEG images downloading on IE11. */
|
||||
const b64toBlob = (b64Data, contentType = '', sliceSize = 512) => {
|
||||
const byteCharacters = atob(b64Data);
|
||||
const byteArrays = [];
|
||||
|
||||
for (let offset = 0; offset < byteCharacters.length; offset += sliceSize) {
|
||||
const slice = byteCharacters.slice(offset, offset + sliceSize);
|
||||
|
||||
const byteNumbers = new Array(slice.length);
|
||||
for (let i = 0; i < slice.length; i++) {
|
||||
byteNumbers[i] = slice.charCodeAt(i);
|
||||
}
|
||||
|
||||
const byteArray = new Uint8Array(byteNumbers);
|
||||
byteArrays.push(byteArray);
|
||||
}
|
||||
|
||||
const blob = new Blob(byteArrays, { type: contentType });
|
||||
return blob;
|
||||
};
|
||||
|
||||
export default b64toBlob;
|
||||
@@ -9,7 +9,9 @@ import studyMetadataManager from './studyMetadataManager';
|
||||
import updateMetaDataManager from './updateMetaDataManager.js';
|
||||
import writeScript from './writeScript.js';
|
||||
import DicomLoaderService from './dicomLoaderService.js';
|
||||
import b64toBlob from './b64toBlob.js';
|
||||
import * as urlUtil from './urlUtil';
|
||||
import makeCancelable from './makeCancelable';
|
||||
|
||||
const utils = {
|
||||
guid,
|
||||
@@ -18,6 +20,7 @@ const utils = {
|
||||
addServers,
|
||||
sortBy,
|
||||
writeScript,
|
||||
b64toBlob,
|
||||
StackManager,
|
||||
studyMetadataManager,
|
||||
// Updates WADO-RS metaDataManager
|
||||
@@ -25,6 +28,7 @@ const utils = {
|
||||
DICOMTagDescriptions,
|
||||
DicomLoaderService,
|
||||
urlUtil,
|
||||
makeCancelable,
|
||||
};
|
||||
|
||||
export {
|
||||
@@ -34,6 +38,7 @@ export {
|
||||
addServers,
|
||||
sortBy,
|
||||
writeScript,
|
||||
b64toBlob,
|
||||
StackManager,
|
||||
studyMetadataManager,
|
||||
// Updates WADO-RS metaDataManager
|
||||
@@ -41,6 +46,7 @@ export {
|
||||
DICOMTagDescriptions,
|
||||
DicomLoaderService,
|
||||
urlUtil,
|
||||
makeCancelable,
|
||||
};
|
||||
|
||||
export default utils;
|
||||
@@ -9,13 +9,15 @@ describe('Top level exports', () => {
|
||||
'addServers',
|
||||
'sortBy',
|
||||
'writeScript',
|
||||
'b64toBlob',
|
||||
'StackManager',
|
||||
'studyMetadataManager',
|
||||
// Updates WADO-RS metaDataManager
|
||||
'updateMetaDataManager',
|
||||
'DICOMTagDescriptions',
|
||||
'DicomLoaderService',
|
||||
'urlUtil'
|
||||
'urlUtil',
|
||||
'makeCancelable',
|
||||
].sort();
|
||||
|
||||
const exports = Object.keys(utils.default).sort();
|
||||
|
||||
@@ -0,0 +1,157 @@
|
||||
/**
|
||||
* Checks if a series is reconstructable to a 3D volume.
|
||||
*
|
||||
* @param {Object} series The `OHIFSeriesMetadata` object.
|
||||
* @param {Object[]} instances The `OHIFInstanceMetadata` object
|
||||
*/
|
||||
export default function isDisplaySetReconstructable(series, instances) {
|
||||
// Can't reconstruct if we only have one image.
|
||||
|
||||
const modality = series._data.modality; // TODO -> Is there a better way to get this?
|
||||
const isMultiframe = instances[0].getRawValue('x00280008') > 1;
|
||||
|
||||
if (!constructableModalities.includes(modality)) {
|
||||
return { value: false };
|
||||
}
|
||||
|
||||
if (!isMultiframe && instances.length === 1) {
|
||||
return { values: false };
|
||||
}
|
||||
|
||||
if (isMultiframe) {
|
||||
return processMultiframe(instances[0]);
|
||||
} else {
|
||||
return processSingleframe(instances);
|
||||
}
|
||||
}
|
||||
|
||||
function processMultiframe(instance) {
|
||||
//TODO: deal with multriframe checks! return true for now.
|
||||
return { value: true };
|
||||
}
|
||||
|
||||
function processSingleframe(instances) {
|
||||
const firstImage = instances[0];
|
||||
const firstImageRows = firstImage.getTagValue('x00280010');
|
||||
const firstImageColumns = firstImage.getTagValue('x00280011');
|
||||
const firstImageSamplesPerPixel = firstImage.getTagValue('x00280002');
|
||||
// Note: No need to unpack iop, can compare string form.
|
||||
const firstImageOrientationPatient = firstImage.getTagValue('x00200037');
|
||||
|
||||
// Can't reconstruct if we:
|
||||
// -- Have a different dimensions within a displaySet.
|
||||
// -- Have a different number of components within a displaySet.
|
||||
// -- Have different orientations within a displaySet.
|
||||
for (let i = 1; i < instances.length; i++) {
|
||||
const instance = instances[i];
|
||||
const rows = instance.getTagValue('x00280010');
|
||||
const columns = instance.getTagValue('x00280011');
|
||||
const samplesPerPixel = instance.getTagValue('x00280002');
|
||||
const imageOrientationPatient = instance.getTagValue('x00200037');
|
||||
|
||||
if (
|
||||
rows !== firstImageRows ||
|
||||
columns !== firstImageColumns ||
|
||||
samplesPerPixel !== firstImageSamplesPerPixel ||
|
||||
imageOrientationPatient !== firstImageOrientationPatient
|
||||
) {
|
||||
return { value: false };
|
||||
}
|
||||
}
|
||||
|
||||
let missingFrames = 0;
|
||||
|
||||
// Check if frame spacing is approximately equal within a tolerance.
|
||||
// If spacing is on a uniform grid but we are missing frames,
|
||||
// Allow reconstruction, but pass back the number of missing frames.
|
||||
if (instances.length > 2) {
|
||||
const firstIpp = _getImagePositionPatient(firstImage);
|
||||
const lastIpp = _getImagePositionPatient(instances[instances.length - 1]);
|
||||
const averageSpacingBetweenFrames =
|
||||
_getPerpendicularDistance(firstIpp, lastIpp) / (instances.length - 1);
|
||||
|
||||
let previousIpp = firstIpp;
|
||||
|
||||
for (let i = 1; i < instances.length; i++) {
|
||||
const instance = instances[i];
|
||||
const ipp = _getImagePositionPatient(instance);
|
||||
|
||||
const spacingBetweenFrames = _getPerpendicularDistance(ipp, previousIpp);
|
||||
const spacingIssue = _getSpacingIssue(
|
||||
spacingBetweenFrames,
|
||||
averageSpacingBetweenFrames
|
||||
);
|
||||
|
||||
if (spacingIssue) {
|
||||
const issue = spacingIssue.issue;
|
||||
|
||||
if (issue === reconstructionIssues.MISSING_FRAMES) {
|
||||
missingFrames += spacingIssue.missingFrames;
|
||||
} else if (issue === reconstructionIssues.IRREGULAR_SPACING) {
|
||||
return { value: false };
|
||||
}
|
||||
}
|
||||
|
||||
previousIpp = ipp;
|
||||
}
|
||||
}
|
||||
|
||||
return { value: true, missingFrames };
|
||||
}
|
||||
|
||||
// TODO: Is 10% a reasonable tolerance for spacing?
|
||||
const tolerance = 0.1;
|
||||
|
||||
/**
|
||||
* Checks for spacing issues.
|
||||
*
|
||||
* @param {number} spacing The spacing between two frames.
|
||||
* @param {number} averageSpacing The average spacing between all frames.
|
||||
*
|
||||
* @returns {Object} An object containing the issue and extra information if necessary.
|
||||
*/
|
||||
function _getSpacingIssue(spacing, averageSpacing) {
|
||||
const equalWithinTolerance =
|
||||
Math.abs(spacing - averageSpacing) < averageSpacing * tolerance;
|
||||
|
||||
if (equalWithinTolerance) {
|
||||
return;
|
||||
}
|
||||
|
||||
const multipleOfAverageSpacing = spacing / averageSpacing;
|
||||
|
||||
const numberOfSpacings = Math.round(multipleOfAverageSpacing);
|
||||
|
||||
const errorForEachSpacing =
|
||||
Math.abs(spacing - numberOfSpacings * averageSpacing) / numberOfSpacings;
|
||||
|
||||
if (errorForEachSpacing < tolerance * averageSpacing) {
|
||||
return {
|
||||
issue: reconstructionIssues.MISSING_FRAMES,
|
||||
missingFrames: numberOfSpacings - 1,
|
||||
};
|
||||
}
|
||||
|
||||
return { issue: reconstructionIssues.IRREGULAR_SPACING };
|
||||
}
|
||||
|
||||
function _getImagePositionPatient(instance) {
|
||||
return instance
|
||||
.getTagValue('x00200032')
|
||||
.split('\\')
|
||||
.map(element => Number(element));
|
||||
}
|
||||
|
||||
function _getPerpendicularDistance(a, b) {
|
||||
return Math.sqrt(
|
||||
Math.pow(a[0] - b[0], 2) +
|
||||
Math.pow(a[1] - b[1], 2) +
|
||||
Math.pow(a[2] - b[2], 2)
|
||||
);
|
||||
}
|
||||
|
||||
const constructableModalities = ['MR', 'CT', 'PT', 'NM'];
|
||||
const reconstructionIssues = {
|
||||
MISSING_FRAMES: 'missingframes',
|
||||
IRREGULAR_SPACING: 'irregularspacing',
|
||||
};
|
||||
@@ -0,0 +1,19 @@
|
||||
export default function makeCancelable(thenable) {
|
||||
let isCanceled = false;
|
||||
const promise = Promise.resolve(thenable).then(
|
||||
function(result) {
|
||||
if (isCanceled) throw Object.freeze({ isCanceled });
|
||||
return result;
|
||||
},
|
||||
function(error) {
|
||||
if (isCanceled) throw Object.freeze({ isCanceled, error });
|
||||
throw error;
|
||||
}
|
||||
);
|
||||
return Object.assign(Object.create(promise), {
|
||||
then: promise.then.bind(promise),
|
||||
cancel() {
|
||||
isCanceled = true;
|
||||
},
|
||||
});
|
||||
}
|
||||
@@ -77,14 +77,6 @@ const getWadoRsInstanceMetaData = (study, series, instance) => {
|
||||
*/
|
||||
function updateMetaDataManagerForSeries(study, series) {
|
||||
series.instances.forEach(instance => {
|
||||
// Cache just images that are going to be loaded via WADO-RS
|
||||
if (
|
||||
instance.imageRendering !== 'wadors' &&
|
||||
instance.thumbnailRendering !== 'wadors'
|
||||
) {
|
||||
return;
|
||||
}
|
||||
|
||||
const metaData = getWadoRsInstanceMetaData(study, series, instance);
|
||||
const numberOfFrames = instance.numberOfFrames || 1;
|
||||
|
||||
@@ -94,7 +86,7 @@ function updateMetaDataManagerForSeries(study, series) {
|
||||
for (let frameNumber = 0; frameNumber < numberOfFrames; frameNumber++) {
|
||||
const imageId = getWADORSImageId(instance, frameNumber);
|
||||
|
||||
// TODO Drop dependency on this
|
||||
// TODO Make a metadata manager which uses study/series/instance UIDS instead of imageIds
|
||||
cornerstoneWADOImageLoader.wadors.metaDataManager.add(imageId, metaData);
|
||||
}
|
||||
});
|
||||
|
||||
@@ -6,7 +6,7 @@ const PARAM_PATTERN_IDENTIFIER = ':';
|
||||
function toLowerCaseFirstLetter(word) {
|
||||
return word[0].toLowerCase() + word.slice(1);
|
||||
}
|
||||
const getFilters = (location = {}) => {
|
||||
const getQueryFilters = (location = {}) => {
|
||||
const { search } = location;
|
||||
|
||||
if (!search) {
|
||||
@@ -55,13 +55,19 @@ const replaceParam = (path = '', paramKey, paramValue) => {
|
||||
return path;
|
||||
};
|
||||
|
||||
const isValidPath = path => {
|
||||
const paramPatternPiece = `/${PARAM_PATTERN_IDENTIFIER}`;
|
||||
return path.indexOf(paramPatternPiece) < 0;
|
||||
};
|
||||
|
||||
const queryString = {
|
||||
getQueryFilters: getFilters,
|
||||
getQueryFilters,
|
||||
};
|
||||
|
||||
const paramString = {
|
||||
parseParam: parseParam,
|
||||
replaceParam: replaceParam,
|
||||
isValidPath,
|
||||
parseParam,
|
||||
replaceParam,
|
||||
};
|
||||
|
||||
export { parse, queryString, paramString };
|
||||
@@ -3,6 +3,39 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [0.52.1](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.52.0...@ohif/i18n@0.52.1) (2019-11-18)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* minor date picker UX improvements ([813ee5e](https://github.com/OHIF/Viewers/commit/813ee5ed4d78b7bda234922d5f3389efe346451c))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.52.0](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.51.0...@ohif/i18n@0.52.0) (2019-11-06)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* modal provider ([#1151](https://github.com/OHIF/Viewers/issues/1151)) ([75d88bc](https://github.com/OHIF/Viewers/commit/75d88bc454710d2dcdbc7d68c4d9df041159c840)), closes [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1146](https://github.com/OHIF/Viewers/issues/1146) [#1142](https://github.com/OHIF/Viewers/issues/1142) [#1143](https://github.com/OHIF/Viewers/issues/1143) [#1110](https://github.com/OHIF/Viewers/issues/1110) [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1119](https://github.com/OHIF/Viewers/issues/1119)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.51.0](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.50.5...@ohif/i18n@0.51.0) (2019-10-15)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Add browser info and app version ([#1046](https://github.com/OHIF/Viewers/issues/1046)) ([c217b8b](https://github.com/OHIF/Viewers/commit/c217b8b))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.50.5](https://github.com/OHIF/Viewers/compare/@ohif/i18n@0.50.4...@ohif/i18n@0.50.5) (2019-10-04)
|
||||
|
||||
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/i18n",
|
||||
"version": "0.50.5",
|
||||
"version": "0.52.1",
|
||||
"description": "Internationalization library for The OHIF Viewer",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
|
||||
@@ -0,0 +1,14 @@
|
||||
{
|
||||
"Browser": "Browser",
|
||||
"Build Number": "Build Number",
|
||||
"Latest Master Commits": "Latest Master Commits",
|
||||
"More details": "More details",
|
||||
"Name": "Name",
|
||||
"OHIF Viewer - About": "OHIF Viewer - About",
|
||||
"OS": "OS",
|
||||
"Report an issue": "Report an issue",
|
||||
"Repository URL": "Repository URL",
|
||||
"Value": "Value",
|
||||
"Version Information": "Version Information",
|
||||
"Visit the forum": "Visit the forum"
|
||||
}
|
||||
@@ -1,4 +1,5 @@
|
||||
{
|
||||
"Close": "Close",
|
||||
"Image": "Image",
|
||||
"Layout": "Layout",
|
||||
"Measurements": "Measurements",
|
||||
|
||||
@@ -0,0 +1,5 @@
|
||||
{
|
||||
"Clear dates": "Clear dates",
|
||||
"End Date": "End Date",
|
||||
"Start Date": "Start Date"
|
||||
}
|
||||
@@ -1,19 +1,23 @@
|
||||
import Buttons from "./Buttons.json";
|
||||
import CineDialog from "./CineDialog.json";
|
||||
import Common from "./Common.json";
|
||||
import Header from "./Header.json";
|
||||
import MeasurementTable from "./MeasurementTable.json";
|
||||
import StudyList from "./StudyList.json";
|
||||
import UserPreferencesModal from "./UserPreferencesModal.json";
|
||||
import AboutModal from './AboutModal.json';
|
||||
import Buttons from './Buttons.json';
|
||||
import CineDialog from './CineDialog.json';
|
||||
import Common from './Common.json';
|
||||
import DatePicker from './DatePicker.json';
|
||||
import Header from './Header.json';
|
||||
import MeasurementTable from './MeasurementTable.json';
|
||||
import StudyList from './StudyList.json';
|
||||
import UserPreferencesModal from './UserPreferencesModal.json';
|
||||
|
||||
export default {
|
||||
export default {
|
||||
'en-US': {
|
||||
AboutModal,
|
||||
Buttons,
|
||||
CineDialog,
|
||||
Common,
|
||||
DatePicker,
|
||||
Header,
|
||||
MeasurementTable,
|
||||
StudyList,
|
||||
UserPreferencesModal,
|
||||
}
|
||||
};
|
||||
},
|
||||
};
|
||||
@@ -0,0 +1,14 @@
|
||||
{
|
||||
"Browser": "Navegador",
|
||||
"Build Number": "Número da compilação",
|
||||
"Latest Master Commits": "Últimos Commits na Master",
|
||||
"More details": "Mais detalhes",
|
||||
"Name": "Nome",
|
||||
"OHIF Viewer - About": "OHIF Viewer - Sobre",
|
||||
"OS": "SO",
|
||||
"Report an issue": "Informar um problema",
|
||||
"Repository URL": "URL do Repositório",
|
||||
"Value": "Valor",
|
||||
"Version Information": "Informação da Versão",
|
||||
"Visit the forum": "Visite o fórum"
|
||||
}
|
||||
@@ -1,4 +1,5 @@
|
||||
{
|
||||
"Close": "Fechar",
|
||||
"Image": "Imagem",
|
||||
"Layout": "Layout",
|
||||
"More": "Mais",
|
||||
|
||||
@@ -0,0 +1,5 @@
|
||||
{
|
||||
"Clear dates": "Limpar datas",
|
||||
"End Date": "Data Final",
|
||||
"Start Date": "Data Inicial"
|
||||
}
|
||||
@@ -1,15 +1,19 @@
|
||||
import Buttons from "./Buttons.json";
|
||||
import CineDialog from "./CineDialog.json";
|
||||
import Common from "./Common.json";
|
||||
import Header from "./Header.json";
|
||||
import UserPreferencesModal from "./UserPreferencesModal.json";
|
||||
import AboutModal from './AboutModal.json';
|
||||
import Buttons from './Buttons.json';
|
||||
import CineDialog from './CineDialog.json';
|
||||
import Common from './Common.json';
|
||||
import DatePicker from './DatePicker.json';
|
||||
import Header from './Header.json';
|
||||
import UserPreferencesModal from './UserPreferencesModal.json';
|
||||
|
||||
export default {
|
||||
export default {
|
||||
'pt-BR': {
|
||||
AboutModal,
|
||||
Buttons,
|
||||
CineDialog,
|
||||
Common,
|
||||
DatePicker,
|
||||
Header,
|
||||
UserPreferencesModal,
|
||||
}
|
||||
};
|
||||
},
|
||||
};
|
||||
@@ -3,6 +3,258 @@
|
||||
All notable changes to this project will be documented in this file.
|
||||
See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
# [0.64.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.63.0...@ohif/ui@0.64.0) (2019-11-19)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* New dialog service ([#1202](https://github.com/OHIF/Viewers/issues/1202)) ([f65639c](https://github.com/OHIF/Viewers/commit/f65639c2b0dab01decd20cab2cef4263cb4fab37))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.63.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.62.4...@ohif/ui@0.63.0) (2019-11-19)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Issue 879 viewer route query param not filtering but promoting ([#1141](https://github.com/OHIF/Viewers/issues/1141)) ([b17f753](https://github.com/OHIF/Viewers/commit/b17f753e6222045252ef885e40233681541a32e1)), closes [#1118](https://github.com/OHIF/Viewers/issues/1118)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.62.4](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.62.3...@ohif/ui@0.62.4) (2019-11-18)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* minor date picker UX improvements ([813ee5e](https://github.com/OHIF/Viewers/commit/813ee5ed4d78b7bda234922d5f3389efe346451c))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.62.3](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.62.2...@ohif/ui@0.62.3) (2019-11-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/ui
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.62.2](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.62.1...@ohif/ui@0.62.2) (2019-11-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/ui
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.62.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.62.0...@ohif/ui@0.62.1) (2019-11-14)
|
||||
|
||||
**Note:** Version bump only for package @ohif/ui
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.62.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.61.0...@ohif/ui@0.62.0) (2019-11-13)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* expose UiNotifications service ([#1172](https://github.com/OHIF/Viewers/issues/1172)) ([5c04e34](https://github.com/OHIF/Viewers/commit/5c04e34c8fb2394ab7acd9eb4f2ab12afeb2f255))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.61.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.60.1...@ohif/ui@0.61.0) (2019-11-12)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Update hotkeys and user preferences modal ([#1135](https://github.com/OHIF/Viewers/issues/1135)) ([e62f5f8](https://github.com/OHIF/Viewers/commit/e62f5f8dd28ab363f23671cd21cee115abb870ff)), closes [#923](https://github.com/OHIF/Viewers/issues/923)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.60.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.60.0...@ohif/ui@0.60.1) (2019-11-08)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* Fix display issues with incorrect thumbnails. Change ImageThumb to functional component. ([#1148](https://github.com/OHIF/Viewers/issues/1148)) ([d70eae3](https://github.com/OHIF/Viewers/commit/d70eae3eb04fe854464f3e62316df8869bba6f11))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.60.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.59.1...@ohif/ui@0.60.0) (2019-11-06)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* modal provider ([#1151](https://github.com/OHIF/Viewers/issues/1151)) ([75d88bc](https://github.com/OHIF/Viewers/commit/75d88bc454710d2dcdbc7d68c4d9df041159c840)), closes [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1146](https://github.com/OHIF/Viewers/issues/1146) [#1142](https://github.com/OHIF/Viewers/issues/1142) [#1143](https://github.com/OHIF/Viewers/issues/1143) [#1110](https://github.com/OHIF/Viewers/issues/1110) [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116) [#1119](https://github.com/OHIF/Viewers/issues/1119)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.59.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.59.0...@ohif/ui@0.59.1) (2019-11-05)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* [#1075](https://github.com/OHIF/Viewers/issues/1075) Returning to the Study List before all series have finishe… ([#1090](https://github.com/OHIF/Viewers/issues/1090)) ([ecaf578](https://github.com/OHIF/Viewers/commit/ecaf578f92dc40294cec7ff9b272fb432dec4125))
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.59.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.58.5...@ohif/ui@0.59.0) (2019-11-04)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 New modal provider ([#1110](https://github.com/OHIF/Viewers/issues/1110)) ([5ee832b](https://github.com/OHIF/Viewers/commit/5ee832b19505a4e8e5756660ce6ed03a7f18dec3)), closes [#1086](https://github.com/OHIF/Viewers/issues/1086) [#1116](https://github.com/OHIF/Viewers/issues/1116)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.58.5](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.58.4...@ohif/ui@0.58.5) (2019-11-04)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Minor issues measurement panel related to description ([#1142](https://github.com/OHIF/Viewers/issues/1142)) ([681384b](https://github.com/OHIF/Viewers/commit/681384b7425c83b02a0ed83371ca92d78ca7838c))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.58.4](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.58.3...@ohif/ui@0.58.4) (2019-10-31)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* application crash if patientName is an object ([#1138](https://github.com/OHIF/Viewers/issues/1138)) ([64cf3b3](https://github.com/OHIF/Viewers/commit/64cf3b324da2383a927af1df2d46db2fca5318aa))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.58.3](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.58.2...@ohif/ui@0.58.3) (2019-10-30)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Fix ghost shadow on thumb ([#1113](https://github.com/OHIF/Viewers/issues/1113)) ([caaa032](https://github.com/OHIF/Viewers/commit/caaa032c4bc24fd69fdb01a15a8feb2721c321db))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.58.2](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.58.1...@ohif/ui@0.58.2) (2019-10-29)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* 🐛 Limit image download size to avoid browser issues ([#1112](https://github.com/OHIF/Viewers/issues/1112)) ([5716b71](https://github.com/OHIF/Viewers/commit/5716b71d409ee1c6f13393c8cb7f50222415e198)), closes [#1099](https://github.com/OHIF/Viewers/issues/1099)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.58.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.58.0...@ohif/ui@0.58.1) (2019-10-29)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **StudyList:** camel case colSpan ([#1123](https://github.com/OHIF/Viewers/issues/1123)) ([0d498ba](https://github.com/OHIF/Viewers/commit/0d498ba17ddde8d8f0c51d742770e1574041eec0))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.58.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.57.1...@ohif/ui@0.58.0) (2019-10-28)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* responsive study list ([#1068](https://github.com/OHIF/Viewers/issues/1068)) ([2cdef4b](https://github.com/OHIF/Viewers/commit/2cdef4b9844cc2ce61e9ce76b5a942ba7051fe16))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.57.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.57.0...@ohif/ui@0.57.1) (2019-10-28)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* MIP styling ([#1109](https://github.com/OHIF/Viewers/issues/1109)) ([0d21cc6](https://github.com/OHIF/Viewers/commit/0d21cc6ad0c47706b9e62e05fe2a0f1d86339760))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.57.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.56.1...@ohif/ui@0.57.0) (2019-10-26)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Snapshot Download Tool ([#840](https://github.com/OHIF/Viewers/issues/840)) ([450e098](https://github.com/OHIF/Viewers/commit/450e0981a5ba054fcfcb85eeaeb18371af9088f8))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.56.1](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.56.0...@ohif/ui@0.56.1) (2019-10-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/ui
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.56.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.55.0...@ohif/ui@0.56.0) (2019-10-22)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* 🎸 Load spinner when selecting gcloud store. Add key on td ([#1034](https://github.com/OHIF/Viewers/issues/1034)) ([e62f403](https://github.com/OHIF/Viewers/commit/e62f403fe9e3df56713128e3d59045824b086d8d)), closes [#1057](https://github.com/OHIF/Viewers/issues/1057)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.55.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.54.0...@ohif/ui@0.55.0) (2019-10-15)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Add browser info and app version ([#1046](https://github.com/OHIF/Viewers/issues/1046)) ([c217b8b](https://github.com/OHIF/Viewers/commit/c217b8b))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [0.54.0](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.53.4...@ohif/ui@0.54.0) (2019-10-14)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* Notification Service ([#1011](https://github.com/OHIF/Viewers/issues/1011)) ([92c8996](https://github.com/OHIF/Viewers/commit/92c8996))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## [0.53.4](https://github.com/OHIF/Viewers/compare/@ohif/ui@0.53.3...@ohif/ui@0.53.4) (2019-10-11)
|
||||
|
||||
**Note:** Version bump only for package @ohif/ui
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
{
|
||||
"name": "@ohif/ui",
|
||||
"version": "0.53.4",
|
||||
"version": "0.64.0",
|
||||
"description": "A set of React components for Medical Imaging Viewers",
|
||||
"author": "OHIF Contributors",
|
||||
"license": "MIT",
|
||||
@@ -39,6 +39,7 @@
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.5.5",
|
||||
"@ohif/i18n": "^0.2.3",
|
||||
"browser-detect": "^0.2.28",
|
||||
"classnames": "2.2.6",
|
||||
"i18next": "^17.0.3",
|
||||
"i18next-browser-languagedetector": "^3.0.1",
|
||||
@@ -47,11 +48,13 @@
|
||||
"moment": "2.24.0",
|
||||
"prop-types": "15.6.2",
|
||||
"react-bootstrap-modal": "4.2.0",
|
||||
"react-dates": "18.4.1",
|
||||
"react-dnd": "9.3.4",
|
||||
"react-dnd-html5-backend": "^9.3.4",
|
||||
"react-dnd-touch-backend": "^9.3.4",
|
||||
"react-dates": "21.2.1",
|
||||
"react-dnd": "9.4.0",
|
||||
"react-dnd-html5-backend": "^9.4.0",
|
||||
"react-dnd-touch-backend": "^9.4.0",
|
||||
"react-draggable": "^4.1.0",
|
||||
"react-i18next": "^10.11.0",
|
||||
"react-modal": "^3.11.1",
|
||||
"react-with-direction": "1.3.0"
|
||||
},
|
||||
"devDependencies": {
|
||||
|
||||
@@ -1,7 +1,7 @@
|
||||
import './CineDialog.styl';
|
||||
|
||||
import React, { PureComponent } from 'react';
|
||||
import { withTranslation } from '../../utils/LanguageProvider';
|
||||
import { withTranslation } from '../../contextProviders';
|
||||
import { Icon } from './../../elements/Icon';
|
||||
import PropTypes from 'prop-types';
|
||||
|
||||
|
||||
@@ -0,0 +1,107 @@
|
||||
import React from 'react';
|
||||
import detect from 'browser-detect';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
|
||||
import './AboutContent.styl';
|
||||
|
||||
const AboutContent = () => {
|
||||
const { t } = useTranslation('AboutContent');
|
||||
|
||||
const { os, version, name } = detect();
|
||||
const capitalize = s =>
|
||||
s.substr(0, 1).toUpperCase() + s.substr(1).toLowerCase();
|
||||
|
||||
const itemsPreset = () => {
|
||||
return [
|
||||
{
|
||||
name: t('Repository URL'),
|
||||
value: 'https://github.com/OHIF/Viewers/',
|
||||
link: 'https://github.com/OHIF/Viewers/',
|
||||
},
|
||||
{
|
||||
name: t('Latest Master Commits'),
|
||||
value: 'https://github.com/OHIF/Viewers/commits/master',
|
||||
link: 'https://github.com/OHIF/Viewers/commits/master',
|
||||
},
|
||||
{
|
||||
name: 'Version Number',
|
||||
value: process.env.VERSION_NUMBER,
|
||||
},
|
||||
{
|
||||
name: t('Build Number'),
|
||||
value: process.env.BUILD_NUM,
|
||||
},
|
||||
{
|
||||
name: t('Browser'),
|
||||
value: `${capitalize(name)} ${version}`,
|
||||
},
|
||||
{
|
||||
name: t('OS'),
|
||||
value: os,
|
||||
},
|
||||
];
|
||||
};
|
||||
|
||||
const renderTableRow = ({ name, value, link }) => (
|
||||
<tr key={name} style={{ backgroundColor: 'transparent' }}>
|
||||
<td>{name}</td>
|
||||
<td>
|
||||
{link ? (
|
||||
<a target="_blank" rel="noopener noreferrer" href={link}>
|
||||
{value}
|
||||
</a>
|
||||
) : (
|
||||
value
|
||||
)}
|
||||
</td>
|
||||
</tr>
|
||||
);
|
||||
|
||||
return (
|
||||
<div className="AboutContent" data-cy="about-modal">
|
||||
<div className="btn-group">
|
||||
<a
|
||||
className="btn btn-default"
|
||||
target="_blank"
|
||||
rel="noopener noreferrer"
|
||||
href="https://groups.google.com/forum/#!forum/cornerstone-platform"
|
||||
>
|
||||
{t('Visit the forum')}
|
||||
</a>
|
||||
{` `}
|
||||
<a
|
||||
className="btn btn-default"
|
||||
target="_blank"
|
||||
rel="noopener noreferrer"
|
||||
href="https://github.com/OHIF/Viewers/issues/new/choose"
|
||||
>
|
||||
{t('Report an issue')}
|
||||
</a>
|
||||
{` `}
|
||||
<a
|
||||
className="btn btn-default"
|
||||
target="_blank"
|
||||
rel="noopener noreferrer"
|
||||
href="http://ohif.org"
|
||||
>
|
||||
{t('More details')}
|
||||
</a>
|
||||
</div>
|
||||
<div>
|
||||
<h3>{t('Version Information')}</h3>
|
||||
<table className="table table-responsive">
|
||||
<thead>
|
||||
<tr>
|
||||
<th>{t('Name')}</th>
|
||||
<th>{t('Value')}</th>
|
||||
</tr>
|
||||
</thead>
|
||||
<tbody>{itemsPreset().map(item => renderTableRow(item))}</tbody>
|
||||
</table>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
export { AboutContent };
|
||||
export default AboutContent;
|
||||
+3
-3
@@ -1,7 +1,7 @@
|
||||
@import './../../design/styles/common/button.styl'
|
||||
@import './../../design/styles/common/table.styl'
|
||||
@import '../../../design/styles/common/button.styl'
|
||||
@import '../../../design/styles/common/table.styl'
|
||||
|
||||
.AboutModal
|
||||
.AboutContent
|
||||
.btn
|
||||
border-color: #ccc;
|
||||
|
||||
@@ -0,0 +1,321 @@
|
||||
import React, { useEffect, useState, createRef } from 'react';
|
||||
import PropTypes from 'prop-types';
|
||||
import { useTranslation } from 'react-i18next';
|
||||
|
||||
import './ViewportDownloadForm.styl';
|
||||
import { TextInput, Select } from '@ohif/ui';
|
||||
|
||||
const FILE_TYPE_OPTIONS = [
|
||||
{
|
||||
key: 'jpg',
|
||||
value: 'jpg',
|
||||
},
|
||||
{
|
||||
key: 'png',
|
||||
value: 'png',
|
||||
},
|
||||
];
|
||||
|
||||
const DEFAULT_FILENAME = 'image';
|
||||
|
||||
const ViewportDownloadForm = ({
|
||||
activeViewport,
|
||||
onClose,
|
||||
updateViewportPreview,
|
||||
enableViewport,
|
||||
disableViewport,
|
||||
toggleAnnotations,
|
||||
loadImage,
|
||||
downloadBlob,
|
||||
defaultSize,
|
||||
minimumSize,
|
||||
maximumSize,
|
||||
canvasClass,
|
||||
}) => {
|
||||
const [t] = useTranslation('ViewportDownloadForm');
|
||||
|
||||
const [filename, setFilename] = useState(DEFAULT_FILENAME);
|
||||
const [fileType, setFileType] = useState('jpg');
|
||||
|
||||
const [height, setHeight] = useState(defaultSize);
|
||||
const [width, setWidth] = useState(defaultSize);
|
||||
|
||||
const [showAnnotations, setShowAnnotations] = useState(true);
|
||||
|
||||
const [keepAspect, setKeepAspect] = useState(true);
|
||||
const [lastImage, setLastImage] = useState();
|
||||
|
||||
const [viewportElement, setViewportElement] = useState();
|
||||
const [viewportElementHeight, setViewportElementHeight] = useState(
|
||||
minimumSize
|
||||
);
|
||||
const [viewportElementWidth, setViewportElementWidth] = useState(minimumSize);
|
||||
|
||||
const [downloadCanvas, setDownloadCanvas] = useState({
|
||||
ref: createRef(),
|
||||
width: minimumSize,
|
||||
height: minimumSize,
|
||||
});
|
||||
|
||||
const [viewportPreview, setViewportPreview] = useState({
|
||||
src: null,
|
||||
width: minimumSize,
|
||||
height: minimumSize,
|
||||
});
|
||||
|
||||
useEffect(() => {
|
||||
enableViewport(viewportElement);
|
||||
|
||||
return () => {
|
||||
disableViewport(viewportElement);
|
||||
|
||||
setHeight(defaultSize);
|
||||
setWidth(defaultSize);
|
||||
};
|
||||
}, [defaultSize, disableViewport, enableViewport, viewportElement]);
|
||||
|
||||
useEffect(() => {
|
||||
const validSize = value => (value >= minimumSize ? value : minimumSize);
|
||||
const loadAndUpdateViewports = async () => {
|
||||
const {
|
||||
image,
|
||||
width: scaledWidth,
|
||||
height: scaledHeight,
|
||||
} = await loadImage(activeViewport, viewportElement, width, height);
|
||||
setLastImage(image);
|
||||
|
||||
toggleAnnotations(showAnnotations, viewportElement);
|
||||
|
||||
setViewportElementHeight(validSize(scaledHeight));
|
||||
setViewportElementWidth(validSize(scaledWidth));
|
||||
|
||||
setDownloadCanvas(state => ({
|
||||
...state,
|
||||
height: validSize(scaledHeight),
|
||||
width: validSize(scaledWidth),
|
||||
}));
|
||||
|
||||
const {
|
||||
dataUrl,
|
||||
width: viewportElementWidth,
|
||||
height: viewportElementHeight,
|
||||
} = await updateViewportPreview(
|
||||
viewportElement,
|
||||
downloadCanvas.ref.current,
|
||||
fileType
|
||||
);
|
||||
|
||||
setViewportPreview(state => ({
|
||||
...state,
|
||||
src: dataUrl,
|
||||
width: validSize(viewportElementWidth),
|
||||
height: validSize(viewportElementHeight),
|
||||
}));
|
||||
};
|
||||
|
||||
loadAndUpdateViewports();
|
||||
}, [
|
||||
activeViewport,
|
||||
viewportElement,
|
||||
showAnnotations,
|
||||
height,
|
||||
width,
|
||||
loadImage,
|
||||
toggleAnnotations,
|
||||
updateViewportPreview,
|
||||
fileType,
|
||||
downloadCanvas.ref,
|
||||
minimumSize,
|
||||
maximumSize,
|
||||
]);
|
||||
|
||||
const onHeightChange = event => {
|
||||
const newHeight = Math.min(event.target.value, maximumSize);
|
||||
setHeight(newHeight);
|
||||
|
||||
setViewportElementHeight(newHeight);
|
||||
|
||||
setDownloadCanvas(state => ({
|
||||
...state,
|
||||
height: newHeight,
|
||||
}));
|
||||
|
||||
if (keepAspect) {
|
||||
const multiplier = newHeight / lastImage.height;
|
||||
const newWidth = Math.round(lastImage.width * multiplier);
|
||||
|
||||
setWidth(newWidth);
|
||||
setViewportElementWidth(newWidth);
|
||||
|
||||
setDownloadCanvas(state => ({
|
||||
...state,
|
||||
width: newWidth,
|
||||
}));
|
||||
}
|
||||
};
|
||||
|
||||
const onWidthChange = event => {
|
||||
const newWidth = Math.min(event.target.value, maximumSize);
|
||||
setWidth(newWidth);
|
||||
|
||||
setViewportElementWidth(newWidth);
|
||||
|
||||
setDownloadCanvas(state => ({
|
||||
...state,
|
||||
width: newWidth,
|
||||
}));
|
||||
|
||||
if (keepAspect) {
|
||||
const multiplier = newWidth / lastImage.width;
|
||||
const newHeight = Math.round(lastImage.height * multiplier);
|
||||
|
||||
setHeight(newHeight);
|
||||
setViewportElementHeight(newHeight);
|
||||
|
||||
setDownloadCanvas(state => ({
|
||||
...state,
|
||||
height: newHeight,
|
||||
}));
|
||||
}
|
||||
};
|
||||
|
||||
const downloadImage = () => {
|
||||
downloadBlob(
|
||||
filename || DEFAULT_FILENAME,
|
||||
fileType,
|
||||
viewportElement,
|
||||
downloadCanvas.ref.current
|
||||
);
|
||||
};
|
||||
|
||||
return (
|
||||
<div className="ViewportDownloadForm">
|
||||
<div className="title">
|
||||
{t(
|
||||
'Please specify the dimensions, filename, and desired type for the output image.'
|
||||
)}
|
||||
</div>
|
||||
|
||||
<div className="file-info-container">
|
||||
<div className="col">
|
||||
<div className="width">
|
||||
<TextInput
|
||||
type="number"
|
||||
min={minimumSize}
|
||||
max={maximumSize}
|
||||
value={width}
|
||||
label={t('Image width (px)')}
|
||||
onChange={onWidthChange}
|
||||
/>
|
||||
</div>
|
||||
<div className="height">
|
||||
<TextInput
|
||||
type="number"
|
||||
min={minimumSize}
|
||||
max={maximumSize}
|
||||
value={height}
|
||||
label={t('Image height (px)')}
|
||||
onChange={onHeightChange}
|
||||
/>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div className="col">
|
||||
<div className="file-name">
|
||||
<TextInput
|
||||
type="text"
|
||||
value={filename}
|
||||
onChange={event => setFilename(event.target.value)}
|
||||
label={t('File name')}
|
||||
id="file-name"
|
||||
/>
|
||||
</div>
|
||||
<div className="file-type">
|
||||
<Select
|
||||
value={fileType}
|
||||
onChange={event => setFileType(event.target.value)}
|
||||
options={FILE_TYPE_OPTIONS}
|
||||
label={t('File type')}
|
||||
/>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div className="col">
|
||||
<div className="show-annotations">
|
||||
<label htmlFor="show-annotations" className="form-check-label">
|
||||
<input
|
||||
id="show-annotations"
|
||||
type="checkbox"
|
||||
className="form-check-input"
|
||||
checked={showAnnotations}
|
||||
onChange={event => setShowAnnotations(event.target.checked)}
|
||||
/>
|
||||
{t('Show Annotations')}
|
||||
</label>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div
|
||||
style={{
|
||||
height: viewportElementHeight,
|
||||
width: viewportElementWidth,
|
||||
position: 'absolute',
|
||||
left: '9999px',
|
||||
}}
|
||||
ref={ref => setViewportElement(ref)}
|
||||
>
|
||||
<canvas
|
||||
className={canvasClass}
|
||||
style={{
|
||||
height: downloadCanvas.height,
|
||||
width: downloadCanvas.width,
|
||||
display: 'block',
|
||||
}}
|
||||
width={downloadCanvas.width}
|
||||
height={downloadCanvas.height}
|
||||
ref={downloadCanvas.ref}
|
||||
></canvas>
|
||||
</div>
|
||||
|
||||
<div className="preview">
|
||||
<h4> {t('Image Preview')}</h4>
|
||||
<img
|
||||
className="viewport-preview"
|
||||
src={viewportPreview.src}
|
||||
alt="Viewport Preview"
|
||||
/>
|
||||
</div>
|
||||
|
||||
<div className="actions">
|
||||
<div className="action-cancel">
|
||||
<button type="button" className="btn btn-danger" onClick={onClose}>
|
||||
{t('Cancel')}
|
||||
</button>
|
||||
</div>
|
||||
<div className="action-save">
|
||||
<button onClick={downloadImage} className="btn btn-primary">
|
||||
{t('Download')}
|
||||
</button>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
||||
ViewportDownloadForm.propTypes = {
|
||||
onClose: PropTypes.func.isRequired,
|
||||
activeViewport: PropTypes.object,
|
||||
updateViewportPreview: PropTypes.func.isRequired,
|
||||
enableViewport: PropTypes.func.isRequired,
|
||||
disableViewport: PropTypes.func.isRequired,
|
||||
toggleAnnotations: PropTypes.func.isRequired,
|
||||
loadImage: PropTypes.func.isRequired,
|
||||
downloadBlob: PropTypes.func.isRequired,
|
||||
defaultSize: PropTypes.number.isRequired,
|
||||
minimumSize: PropTypes.number.isRequired,
|
||||
maximumSize: PropTypes.number.isRequired,
|
||||
canvasClass: PropTypes.string.isRequired,
|
||||
};
|
||||
|
||||
export default ViewportDownloadForm;
|
||||
@@ -0,0 +1,105 @@
|
||||
@import '../../../design/styles/common/global.styl'
|
||||
@import '../../../design/styles/common/form.styl'
|
||||
@import '../../../design/styles/common/button.styl'
|
||||
|
||||
.ViewportDownloadForm
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
z-index: 1080 !important;
|
||||
|
||||
input, select
|
||||
max-height: 30px;
|
||||
|
||||
.title
|
||||
margin: 0;
|
||||
font-weight: bold;
|
||||
|
||||
.file-info-container
|
||||
display: flex;
|
||||
flex-direction: row;
|
||||
margin: 20px 0;
|
||||
border-radius: 5px;
|
||||
padding: 20px 10px 0;
|
||||
background-color: #16202b;
|
||||
|
||||
.form-control.input-ohif
|
||||
padding: 6px 12px;
|
||||
|
||||
@media screen and (max-width: 1023px)
|
||||
flex-direction: column;
|
||||
|
||||
.col
|
||||
flex-grow: 1;
|
||||
|
||||
.input-ohif
|
||||
margin-left: 15px;
|
||||
@media screen and (max-width: 1023px)
|
||||
margin-left: 0;
|
||||
margin-top: 5px;
|
||||
width: 100%;
|
||||
|
||||
.file-type
|
||||
.select-ohif
|
||||
margin-left: 17px;
|
||||
@media screen and (max-width: 1023px)
|
||||
margin-left: 0;
|
||||
width: 100%;
|
||||
|
||||
.show-annotations
|
||||
font-weight: bold;
|
||||
line-height: 30px;
|
||||
input
|
||||
margin-right: 7px;
|
||||
vertical-align: middle;
|
||||
label
|
||||
display: flex;
|
||||
justify-content: center;
|
||||
align-items: center;
|
||||
|
||||
.preview
|
||||
display: flex;
|
||||
flex-direction column;
|
||||
height: fit-content;
|
||||
background-color: #16202b;
|
||||
width: fit-content;
|
||||
padding: 10px;
|
||||
border-radius: 5px;
|
||||
align-self: center;
|
||||
margin-bottom: 20px;
|
||||
@media screen and (max-width: 1023px)
|
||||
width: 100%;
|
||||
justify-content: center;
|
||||
align-items: center;
|
||||
|
||||
.viewport-preview
|
||||
max-height: 512px;
|
||||
max-width: 512px;
|
||||
|
||||
h4
|
||||
width: 100%;
|
||||
text-align center;
|
||||
font-size: 1.3em;
|
||||
margin: 0 0 10px;
|
||||
|
||||
.preview-container
|
||||
width: auto;
|
||||
height: 100%;
|
||||
max-height: 400px;
|
||||
object-fit contain;
|
||||
|
||||
.actions
|
||||
display: flex;
|
||||
flex-wrap: nowrap;
|
||||
justify-content: flex-end;
|
||||
align-items: center;
|
||||
.action-cancel
|
||||
margin: 0 20px;
|
||||
.actions-save
|
||||
margin: 0 0 0 10px;
|
||||
|
||||
.modal-dialog
|
||||
height: 100%;
|
||||
|
||||
.modal-body
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
Loaded 100 of 304 files, more files were not shown because too many files have changed in this diff.
Show more
Reference in new issue
Block a user