Commit Graph
241 Commits
Author SHA1 Message Date
ohif-bot 652e61a417 chore(version): Update package versions [skip ci] 2023-06-15 17:08:06 +00:00
ohif-bot 48bcdd6b50 chore(version): version.json [skip ci] 2023-06-15 17:08:01 +00:00
Joe Boccanfuso cc73f15c8c fix(Button): redesign of existing Button component for consistency (#3473) 2023-06-15 12:58:21 -04:00
ohif-bot 3dce70e624 chore(version): Update package versions [skip ci] 2023-06-13 12:59:35 +00:00
ohif-bot 1d00893c49 chore(version): version.json [skip ci] 2023-06-13 12:59:31 +00:00
ohif-bot a6d967a37e chore(version): Update package versions [skip ci] 2023-06-13 02:41:20 +00:00
ohif-bot f23a4500f5 chore(version): version.json [skip ci] 2023-06-13 02:41:17 +00:00
ohif-bot a74e5a733f chore(version): Update package versions [skip ci] 2023-06-13 02:12:34 +00:00
ohif-bot 9326c4fffc chore(version): version.json [skip ci] 2023-06-13 02:12:31 +00:00
ohif-bot cd1d097957 chore(version): Update package versions [skip ci] 2023-06-12 18:34:02 +00:00
ohif-bot 866647ae79 chore(version): version.json [skip ci] 2023-06-12 18:33:58 +00:00
Joe Boccanfuso 694b4a3f4d chore(version): update cornerstone version (#3468) 2023-06-12 14:23:49 -04:00
ohif-bot 0e52169677 chore(version): Update package versions [skip ci] 2023-06-08 17:33:51 +00:00
ohif-bot b23cbc34dd chore(version): version.json [skip ci] 2023-06-08 17:33:48 +00:00
ohif-bot ca07ef2928 chore(version): Update package versions [skip ci] 2023-06-07 13:40:47 +00:00
ohif-bot 48aa945839 chore(version): version.json [skip ci] 2023-06-07 13:40:43 +00:00
ohif-bot 655ccd310e chore(version): Update package versions [skip ci] 2023-06-07 13:13:40 +00:00
ohif-bot 20275d7d08 chore(version): version.json [skip ci] 2023-06-07 13:13:36 +00:00
ohif-bot 9ee13860a2 chore(version): Update package versions [skip ci] 2023-06-07 12:38:24 +00:00
ohif-bot f43e45ab1a chore(version): version.json [skip ci] 2023-06-07 12:38:21 +00:00
Joe BoccanfusoandAlireza da5c32bce3 fix(modal and dialogues): fixes as per specifications (#3438)
Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-06-07 08:31:09 -04:00
ohif-bot ffaffbdfa3 chore(version): Update package versions [skip ci] 2023-06-07 01:54:54 +00:00
ohif-bot de35860ba6 chore(version): version.json [skip ci] 2023-06-07 01:54:51 +00:00
ohif-bot 6d7561946b chore(version): Update package versions [skip ci] 2023-06-06 21:47:27 +00:00
ohif-bot fd8a9599d7 chore(version): version.json [skip ci] 2023-06-06 21:47:23 +00:00
ohif-bot ef9363e8b9 chore(version): Update package versions [skip ci] 2023-06-06 20:11:21 +00:00
ohif-bot 77a8447ceb chore(version): version.json [skip ci] 2023-06-06 20:11:17 +00:00
Alireza fc8b948b0d chore(build): separate half and half for publish (#3446) 2023-06-06 16:02:59 -04:00
Alireza 828690cd3b chore(build): try to build demo and docs (#3434) 2023-06-06 13:34:26 -04:00
Alireza c7bcf1134d fix(staticwado): SM and RT and update the server with new data (#3422)
* fix bugs for the RT for the new demo

* fix SM with the static-wado server

* remove thumbnail from tmtv

* migration guide

* fix stability for the rt struct

* apply review comments

* add loading indicator to SM

* pdf works

* try to fix relative bulkData

* fix the rest

* fix preflight for the SM

* fix typo

* apply review comments

* yarn lock
2023-05-29 09:04:49 -04:00
Joe Boccanfuso 685520acab feat(command): Added command and hotkey binding for navigate to next and previous display set. (#3409)
* fix(command): Added command and hotkey binding for navigate to next and previous display set.

* Centralized the sorting (function) of display sets since at least three
areas sort display sets: hanging protocols, study/thumbnail browser and
updateViewportDisplaySet command.

* Renamed some methods for clarity.

* Scrolling active thumbnail into view for an updateViewportDisplaySet

* Added a null check.

* Added check to minimize thumbnail scrolling.
2023-05-23 15:03:55 -04:00
Alireza 4a17177d81 chore(bump): use cornerstone 3d 1.x (#3414)
* chore(bump): use cornerstone 3d 1.x

* yarn lock
2023-05-22 15:26:18 -04:00
Joe Boccanfuso c0fd4416ed fix(Measurement): fixed line dashing of measurements in various scenarios (#3407)
* fix(Measurement): fixed line dashing of measurements in various scenarios

For a StackViewport simply rely on the SeriesInstanceUID being part of the
tracked measurements or not.

For a VolumeViewport first check the image id of the current image in the viewport
and then check the SeriesInstanceUID (like for a StackViewport) if an id is returned.
To reliably get the id of the current image, listen for the VOLUME_VIEWPORT_NEW_VOLUME event.

* Changes for PR comments.
2023-05-18 20:59:33 -04:00
Joe Boccanfuso 045e54aa02 fix(Measurement): Use dashed lines for measurments of viewports where getCurrentImageId returns undefined (#3392)
* fix(Measurement): Use dashed lines for measurments of viewports where getCurrentImageId returns undefined

* Updated cornerstone3d packages

* Fixed code comment.

* Removed unused imports.
2023-05-16 10:02:10 -04:00
Bill WallaceandAlireza d5c5951e57 fix(SR): KO series being displayed in browser list (#3382)
* fix: KO series being displayed in browser list

* fix sr for volume viewports

* move highlight labelmap to RAF

* remove commented code

* fix the hydration bug for the SR

* apply review comments

* revert the key images for sr

* Remove some obsolete changes

* set initial image for sr instead of jump

* Remove viewportType stack

---------

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-05-15 08:23:13 -04:00
Alireza 84cb709b44 feat(panel and auth): fix study panel to not rely on priors and add token param to url (#3381)
* fix: multiframe

* fix the unnecessary use of prior since some servers dont like it

* add authentication via token in url

* add data citation

* add resources

* upgrade packages

* yarn lock

* apply review comments
2023-05-11 10:01:33 -04:00
Joe Boccanfuso 8eaa1877fd fix(DICOM PDF and Video): fixes for local DICOM load and remote data sources (#3374)
* fix(DICOM PDF and Video)
- added retrieve.directURL for local DICOM load data source; it returns a data URL
- fixed various checks for video using transfer syntaxes and SOP class UID with number of frames
- added call to 'rendered' endpoint for those data sources that support it; others get BulkDataURI

* Added DOC (PDF) and OT (for video in particular) to list of non-image thumbnail modalities.

* Fixed broken e2e tests.
2023-05-10 12:42:48 -04:00
Alireza 969e7698fa chore(bump cs3d): bump package and add caching to webpack (#3353)
* chore(bump cs3d): bump package and add caching to webpack

* remove test for now
2023-05-03 12:30:02 -04:00
Bill Wallace b5b936b53e fix(jump): Jump to measurement wasn't jumping when presentation already existed (#3318)
* fix: Jump to measurement after presentation store

* Fix initial load of DICOM SR

* Fix measurement highlight issues

* Clear measurements changed to array

* Fix merge issues

* PR comments

* Removed unused formatting.  Change to single event

* Fix the unit test

* PR review comments

* refactor(viewport): simplify imports, align destructuring

Simplify import statements by removing unused imports, organize existing imports, and align destructured imports consistently across the component.

---------
2023-05-01 12:54:33 -04:00
Alireza f377153b60 fix(viewportDialog): viewportDialoge not appearing in non-tracked viewports (#3071)
* fix: viewportdialoge not appearing in non-tracked viewports

* feat(viewports): Introduce useViewportDialog and remove deprecated API

This commit introduces the `useViewportDialog` hook and replaces the deprecated `viewportDialogApi` with the new `viewportDialogState`. Additionally, the notifications in `OHIFCornerstoneRTViewport` and `OHIFCornerstoneViewport` have been removed. Finally, the `CinePlayer` component now accepts optional parameters.

* fix tests
2023-04-28 11:06:03 -04:00
M.D 075008c674 feat(microscopy): add dicom microscopy extension and mode (#3247)
* skeleton for dicom-microscopy extension

* skeleton for microscopy mode

* [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension

* [feat] ported microscopy mode from private repo

* added new definitions to the package.json

* webpack configuration update for microscopy extension

* register new icons for microscopy tools

* fixes to the microscopy extension and mode

* trivial error fix - typescript type import error

* link microscopy extension with default OHIF app plugin config

* demo config fix

* fix logs

* remove unsed imports

* [fix] loading of microscopy

* [fix] webworker script loading, normalizing denaturalized dataset

* found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2

* hide thumbnail pane by default, as we have issues with

* comments

* remove unused code

* [feat] microscopy - annotation selection

* [feat] microscopy - edit annotation label

* wip

* [bugfix] dicom-microscopy tool

* [bugfix] dicom microscopy annotations

* [fix] mixed-content blocking caused by BulkDataURI

* [fix] microscopy measurements panel - center button

* [fix] microscopy measurements panel - styling

* [fix] microscopy - controls

* fix local loading of microscopy

* fix local loading of dicom microscopy

* fix typo - indexof to indexOf

* [fix] remove unused icons

* remove commented out lines from webpack configuration

* platform/viewer/public/config/default.js - revert accidental changes

* [refactor] redirecting to microscopy mode on Local mode

* attribution to DMV and SLIM viewer

* [fix] code review feedbacks

* fix thumbnails

* [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent()

* [fix] interactions, webpack config, roi selection

* [feat] microscopy - remove select tool  from UI

* microscopy author

* [fix] saving and loading SR

* [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent

* remove author section from readme

* refactor SR saving feature

* fix webpack config after merge

* [bugfix] repeated import

* fix e2e

* webpack configuration

* hide "Create report" button for microscopy
2023-04-27 20:53:52 -04:00
Joe Boccanfuso 51cb0519fc fix(Browser history): fixed NPE when navigating a study via browser history and history navigation is now available via the navigateHistory command (#3337)
* fix(Browser history):
- fixed an NPE when navigating to a different study via the URL
- exposed browser history navigation via a command

* Added documentation for the navigateHistory command.
Moved the history object from UI to viewer.
2023-04-27 10:46:23 -04:00
Alireza eea0ed487b feat(dicomImageLoader): replace wado image loader with the new library (#3339)
* use new dicom image loader instead of cswil

new dicom image loader fails

update dicom image loader

update yarn lock

modify webpack

* update webpack

* fix webpack

* update package versions

* update package versions
2023-04-26 20:55:56 -04:00
Alireza 66863281c4 feat(RT): add dicom RT support via volume viewports (#3310)
* feat: initial RT support

* make the segmentation service work with representation data

* feat: make segmentation service work with representations

* fix rtss vis

* fix: rt hydration

* fix the rendering of rt names

* fix imports

* refactor: Modify status and click handling for hydration of RTStructures

Modify status and click handling for hydration of RTStructures by renaming `onPillClick` to `onStatusClick` in `OHIFCornerstoneRTViewport.tsx` and `_getStatusComponent.tsx` files. Also, update initial segmentation configurations in `PanelSegmentation.tsx` and simplify configuration changes and values for segmentation service in `SegmentationService.ts`. Finally, remove console debug in `CornerstoneViewportService.ts`.

* wip for highlighting contours

* refactor rt displayset code

* review code update

* update cornerstone dependencies

* refactor: Update license year, version number, and minor code cleanup

This commit updates the license year in several files, updates the version number in package.json, and contains minor code cleanup in two files.

* add bulkdataURI retrieve for RT

* fix package version

* apply review comments

* apply review comments

* apply review comments

* feat(panels): refactor and streamline segmentation configuration and inputs

Rewrote state hooks and streamlined the configuration input for `PanelSegmentation` to be more verbose and reusable. Included several new input types, including the `InputRange` component which now shows a fixed floating value based on the step provided. The `SegmentationConfig` component now works with dynamic values controlled by `initialConfig`. These changes should improve function usability and make the code more maintainable going forward.

* fix various bugs

* fix contour delete by upgrade cs3d version

* feat(viewport, inputNumber, segmentationConfig, orthanc): Implement minimum and maximum values for input number components, and useBulkDataURI for Orthanc configuration. Compare measurement view planes with absolute viewport view planes in Cornerstone viewport.

* update yarn lock
2023-04-26 12:21:08 -04:00
Bill Wallace 69d8e6a191 fix(SR): When loading DICOM SR, only one measurement is shown with no way to show others (#3228)
* fix: Make the cornerstone sR viewport show all measurements

* PR fixes

* PR fixes

* Add a DICOM SR hanging protocol

* Duplicate the hanging protocol for seg as well

* PR requested change

* PR requested changes

* PR fixes plus merge update fixes

* PR fixes and integration test fix

* PR - documentation
2023-04-25 17:25:10 -04:00
M.D 47c25f4364 feat(measurements): add CircleROI Tool (#3211)
* [refactor] measurement service mapping files - rename to .ts files

* [fix] RectangleROI - measurement service mapping _getReport() function - tool name fix

* [feat] added CircleROI tool from updated cornerstone3D

* [refactor] fix for typescript strong typing warnings

* [feat] cornerstone-dicom-sr extension - added CircleROI tool

* [feat] added toolbar button for CircleROI tool

* [doc] doc updates for CircleROI tool

* [update] library - dcmjs to 0.29.5

* [fix] roundNumber() function when given strings

* [fix] refactor after upgrading conerstonejs library 0.49.0

* yarn.lock file change
2023-04-17 08:23:03 -04:00
rodrigobasilio2022andAlireza 226244a26c feat(multiframe): enhanced support for multiframe dicom (#3164)
* Changes in cswil version and multiframe

* Minor changes

* wip

* Adding support for NM multiframe images

* Applying PR suggestions

* fixing package versions

* Restoring default.js config file

* Check if NM subtype is reconstructable

* Restore default.js values

* refactore code

* feat: add flag for strict zspacing

---------

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-03-31 22:21:16 -04:00
Joe Boccanfuso d5ff590dfc feat(DoubleClick): double click a viewport to one up and back (#3285)
* feat(DoubleClick): double click a viewport to one up and back

Added a toggleOneUp command that puts the active viewport into a 1x1 grid layout
and it toggles out of 'one-up' by restoring its saved 'toggleOneUpViewportGridStore'
from the StateSyncService.
Added double click customization for the Cornerstone extension with the
default double click handling being the toggleOneUp command.
Added a cypress test for the double click functionality.

* PR feedback:
- tracked viewport measurements no longer show as dashed when toggling one up
- disallowed double clicking near a measurement
- updated cornerstone3D dependencies to fix double click of TMTV and volume viewport 3D
- created ViewportGridService.getLayoutOptionsFromState

* Updated the ViewportGridService docs.

* Switched to using 'cornerstoneViewportClickCommands' and consistency with the context menu clicks.
2023-03-29 15:39:51 -04:00
Alireza 4734b3bac6 fix(volumeLoad): should not have missing slices when loading (#3287)
* fix(volumeLoad): should not have missing slices when loading

* add review comments
2023-03-29 09:40:22 -04:00
Joe Boccanfuso ed7ded05db fix(Volume3DViewport): Replacing the volume 3D viewport with another reconstructable series (#3281)
* fix(Volume3DViewport) - Replacing the volume 3D viewport with another reconstructable series fails
- updated cornerstone3D core package dependency
- checked for null presentations when setting presentations
- added viewportIndex as a dependency for enabling and disabling an OHIFCornerstoneViewport

* PR feedback - removed viewportIndex useEffect dependency for enabling/disabling OHIFCornerstoneViewport
2023-03-27 15:03:16 -04:00