Commit Graph
4639 Commits
Author SHA1 Message Date
Michael AndersenandMichael Andersen ccf010c0fe feat: DicomTagBrowser tool (#2975)
* init bring v2 tag browser to v3, some small bug fixes

* moved tag browser to default extension, altered style to be more OHIF-v3-like

Co-authored-by: Michael Andersen <Michael.Andersen@rmp.uhn.ca>
2022-11-16 22:16:12 -05:00
Alireza eddd510a35 feat: enhanced error handling ui (#3021)
* feat: better error handling

* better error handling

* try to fix netlify build

* remove new line
2022-11-16 20:27:24 -05:00
AlirezaandErik Ziegler 83ea228d86 feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015)
* feat: add initial sop class handler for SEG

* feat: move segmentation service

* update segmentation service methods

* fix: viewport data structure

* feat: Add initial render for the DICOM SEG for each displaySet

* fix: various wrong architectural dependencies between services

* feat: initial separate SEG display in each viewport

* feat: refactore viewport action bar

* initial work for SEG hydration

* fix: various bugs regarding drag and dropping different viewports

* fix: rendering issues for multiple seg displaysets

* fix: bugs for thumbnail and hydration

* feat: fix the initial segment color

* update after rebase

* feat: initial design for the segmentation group table

* feat: initial new design for the segmentation panel

* feat: segmentation panel

* feat: make segmentation appear on all related viewports

* fix: segmentation load bug based on functional groups

* initial work for segmentation crosshairs

* fix: various stylings and functionality

* fix: various stylings for the seg panel

* fix: overflow styles

* feat: add more ui components

* feat: added segmentation config

* feat: add jump to segment

* feat: add jump to segment for DICOM SEG viewport

* fix: bugs after rebase

* feat: jump in segmentation viewport

* fix: mpr support for seg

* feat: add more icons

* feat: new icons

* feat: add new side panel

* feat: add segmentation config

* feat: add loading indicator to ohif

* feat: make hanging protocols follow matching rules for viewports

* feat: enhance drag and drop to be hanging protocol aware

* fix: mpr restore previous layout

* fix: crosshairs toggle

* fix: add auth headers to the dicom loader via dicomwebclient

* fix: bug for crosshairs toggle in mpr

* fix: seg viewport reusing old toolGroup

* feat: add loading animation with lottie

* fix: various bugs for Segmentation hydration in mpr

* feat: change outline alpha to outline opacity

* feat: loading indicator for seg viewport

* fix: various segmentation group styles

* fix: local mode for seg

* feat: add animation for the highlight

* fix: loading indicatro to show segment indices

* feat: enhance modality drop down ui

* fix: panels

* fix: download form

* fix: layout shift in loading indicator

* fix: loading indicator to have correct values

* fix: update software number

* fix: image jump between MPR and default

* fix: segmentation cleanup and cine service cleanup

* fix: segmentation toolgroup clena up

* fix: highlight interval should not trigger again

* fix: issue with multiframe sorting

* rename: change onSeriesChange to onArrowsClick

* fix: buttons for tmtv and layout shift

* fix: various bugs wrt crosshairs

* fix: crosshairs re init on reset camera

* fix: middle slice calculation different from cs middle reset camera

* fix: reset camera should reset viewport camera

* fix: loading segments in MPR mode

* fix: tmtv hp back to before

* fix: layout shift

* feat: orientation markers for volume viewport

* fix: capture for volume viewports

* fix: memory leak for back to worklist

* fix: loading bar bg color

* fix: side panel for only one panel

* fix: react select style in production

* fix: various styling for segmentation groups

* fix: various ui styles

* feat: add new segmentation config styles

* fix: hover state for segmentation item

* fix: side panel layout shift

* temp add panels

* try to fix scrollbar for thimbnail

* fix: scroll not appearing for side panels

* feat: changed styles for scrollbar

* feat: add cpu fallback warning

* fix: webworker destroy

* fix: select styles

* fix: orientation marker color and position

* fix: capture screenshot for volume viewports

* fix: hide segment visibility on mpr

* fix: reloading an already loaded seg displayset

* feat: add is equal

* fix: mpr jump to measurements

* apply review comments

* fix: optimization for the segmentation load

* fix: remove unnecessary context menu and hp service reset

* fix: segmentation service wrt brush settings

* feat: initial work for the stack synchronization

* fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements

* fix: various react proptypes

* fix: thumbnails for the tmtv and change default props to default params

* feat: make showing loading indicator configurable and add docs

* bump versions and add more docs

* fix demo

* update cornerstone versions

* apply review comments

* feat: add reference lines

* fix build

* fix unit tests

* add reference lines icon

* fix: e2e tests

* fix static wado config

* docs: add segmentation service docs

* fix: docker build

* fix: keep camera and bump versions

* Try re-enabling minification to fix deploy previews

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
2022-11-16 14:19:52 -05:00
wangxuan 08c58b0634 fix: deprecated syntax of lower substr (#3013)
* fixed import error syntax

* replace lower.substr with lower.substring

* remove redundant parameter

* fixed import syntax error

* fixed import syntax error
2022-11-10 13:29:55 -05:00
wangxuan 173b6568fd fix: import error syntax (#3002) 2022-11-08 23:15:47 -05:00
Ouwen Huang eb7874bd0b feat: added useCursors, useCPURendering, and maxCacheSize config params (#2988) 2022-11-07 10:05:56 -05:00
Alireza 3d0d09e1bc fix: add the quotation exclusion for accept header for our configs (#3006)
* fix: revert the quotation inclusion for accept header to be off by default

* changed all configs
2022-11-04 09:01:34 -04:00
Bill Wallace 7dc9b3549f fix(viewer): View two or more specified studies (#2815) 2022-11-03 16:57:32 -04:00
Zaid Safadi 6b1f9f35a8 fix: wado-rs retrieve metadata doesn't work with .NET servers #2969 (#2970)
* fix: wado-rs retrieve metadata doesn't work with .NET servers (issue #2969)

* add configuration to ommit the quots from multipart request
2022-11-03 11:19:35 -04:00
TFRadicalImagingandThomas Forster 6698300ace fix: Display series specified by URL query parameters in viewer (#3000)
* Changed the static wado filter to allow filtering for series before start make requests of the entire metadata

* fixed first filter to use studyFilterKeys

Co-authored-by: Thomas Forster <thomasforster@ip-192-168-68-104.eu-west-2.compute.internal>
2022-11-01 18:25:49 -04:00
Bill WallaceandThomas Forster 2507a4b546 feat: Display series specified by URL parameters in viewer (#2979)
* WIP

* WIP

* WIP

* fixed Bill comments on PR - https://github.com/OHIF/Viewers/pull/2979

* added series number to series filter and removed extra console.log

* changed the filter of seriesFilterKeys to studyFilterKeys

* changed the seriesInstaceUID to SeriesInstanceUID to make coerence with StudyInstanceUID

* reverted change on extension retrieveMetadataLoaderAsync and make the right change on Mode.tsx

* fixed PR comments and add small information about the filters

Co-authored-by: Thomas Forster <thomasforster@MacBookPro-Thomas.local>
2022-10-25 10:20:32 -04:00
Ouwen Huang 5482de08bc cli: pass npm_token for private repos (#2987) 2022-10-18 22:01:35 -04:00
Tim 26cc87a2ac docs: fix spelling of continuous (#2983)
I've left the file name as it as to not break and existing URL's
2022-10-18 22:00:33 -04:00
md-prog 17257ff0df upgrade @cornerstonjs/core to 0.16.8 (#2980) 2022-10-14 16:17:09 -04:00
md-prog dcf3fdbed3 dcmjs package reference upgraded to 0.28.3 (#2978)
Just a package version upgrade.
2022-10-14 14:48:14 -04:00
md-prog b93067b6a2 feat: Annotation and Measurements support on multi-frame DICOM (#2973)
* added utilities to get frameNumber from imageId and add frameNumber to per-frame instance copy

* Fix measurements' display texts on the Measurements Panel to have the correct instance number and frame number

* fixed minor React bugs (errors on console)

* fixed React's console bugs that are logged for some series that doesn't have "description"

* bug fix - multi-frame files was not loading frames correctly. It was loading Frame 1 twice, and not loading the last frame. Due to wrong frame number indexing (frame number begins with 1, not 0)

* metadata parser fix - providing default values of imagePlaneModule

* measurement SR support on multi-frame DICOM

* bug fix - jumping to the selected measurment on multi-frame DICOM

* upgrade dcmjs dependency to 2.8.1

* StudySummary component - allow "description" to be null

* make getUIDsFromImageID() method public from MetadataProvider

* imageId usage fixes to be more stable

* change the variable name to be more meaningful

* fix metaProvider importing

* for(...of) instead of for(i=0;i<length;..)
as that doesn't assume anything about the layout/design and just gets next until done.

* use Array.findIndex instead of plain for loop

* use ReferencedSOPSequence[0] - because the ReferencedSOPSequence is an array that happens to have attributes of child zero when of length 1, but you shouldn't count on that.

* DisplaySetService.getDisplaySetForSOPInstanceUID() - added optional frameNumber parameter for future usage : now they are just ignored as we are not supporting multiframe splits

* simple code refactoring

* refactoring for checking undefined values - mappedAnnotations

* remove unreachable code

* code refactoring  - prefer conditional chaining

* fix how we access imageIds of viewport (StackViewport)
2022-10-13 11:07:56 -04:00
Sean Doyle af09578544 feat: Added support for TID 1410 relationship types (#2942)
* Added support for TID 1410 relationship types

* Added POLYLINE rendering from ladeirarodolfo to PR

* Rolled Dockerfile back to master to make merge easier

* Minor cleanup
2022-10-10 23:09:38 -04:00
Alireza 7f770e4fb6 fix: cine scrolling was broken when navigating back to studylist (#2974)
* fix: cine clean up when exited

* fix: make cine work while dragging and dropping another displayset
2022-10-07 00:32:28 -04:00
Michael AndersenandMichael Andersen 1d47f31738 feat: Add logout for oidc (#2840)
* add oidc logout route, button in menu

* removed old comments

* use local storage to trigger signout in other tabs

* refactored to make use useEffect

* cleaned up comments

* fix remove event listener

* moved remove leftover storage variable to beginning of usemount

Co-authored-by: Michael Andersen <Michael.Andersen@rmp.uhn.ca>
2022-10-06 22:40:16 -04:00
Bill Wallace e401358887 fix(hp): Make the updated hanging protocol compatible with modes (#2971)
There had been a change made to make the hanging protocols
auto initialize, but that caused problems on mode init
because the couldn't specify the hanging protocols any longer.
THis change restores that, and also improves the API a little
bit by allowing the display set selectors to be specified by id
instead of positionally.

fix(hp):PR Review Comments

fix(hp):Unit test and docs
2022-10-05 08:32:54 -04:00
Ouwen Huang 1bcc9ccd89 feat: added default close option to viewer layout for sidebar ui (#2961) 2022-09-28 15:46:58 -04:00
Bill Wallace 06feca1f4a fix(cornerstoneCache):Race condition on cache notification (#2900) 2022-09-23 16:24:18 -04:00
Alireza 9df557831b fix: mpr button is not ready to be displayed yet (#2951) 2022-09-22 11:55:51 -04:00
Ouwen Huang c9818d9fc5 fix: sop class handler isSingleImageModality always undefined (#2948) 2022-09-21 09:54:29 -04:00
Alireza 939ba958a1 fix: dockerfile adds typo during merge 2022-09-21 09:53:33 -04:00
Alireza adbb236ab4 fix: dockerfile typo (#2949) 2022-09-21 09:52:33 -04:00
Alireza 0d7f29606f fix: dockerfile to include preinstall (#2943) 2022-09-20 23:49:22 -04:00
Alireza 5f480ff746 feat: explicit layout apply via HangingProtocolService (#2936)
* feat: add more types to HP service

* change hp to have apply protocol

* feat: mpr initial work

* apply protocol by id

* feat: mode should be able to apply protocol directly

* fix: wrong inheritance for viewports drag and drop

* apply review comments
2022-09-20 23:40:26 -04:00
Ouwen Huang fb9744a817 feat: added rows column props to LayoutSelector (#2945) 2022-09-20 17:43:23 -04:00
Bill Wallace ff24b57a4b feat: Multiframe metadata provider (#2938)
* fix(volume):Support volume viewing

* fix(multiframe):Display multiframe US, and multiframe PR fixes

* fix(metadataProvider):Don't call combine if frame not defined
2022-09-20 14:47:18 -04:00
Bill Wallace 3900e62641 fix(datasource): configurability of additional data source extensions (#2931)
* feat(dataSource):Support more than one data source type.

* Add consumer type
2022-09-20 11:05:26 -04:00
Alireza 55a1704e4a feat: upgrade tailwind to version 3 (#2933)
* initial upgrade commit for tailwind

* fix: inconsistensies in button

* fix: various places with conflicts

* final fixes

* fix: dialog header color

* apply review
2022-09-19 20:02:53 -04:00
Bill Wallace dc04296cfd feat(synchronizers): Add registration for synchronizers (#2861)
doc(hp):Update the sync group/hanging protocol documentation
2022-09-15 23:23:17 -04:00
Alireza f9449e97df fix: storybook with typescript (#2926)
* fix storybook for typescript

* fix babel
2022-09-13 08:57:22 -04:00
Bill Wallace 1b30ff83a5 fix: ohif cli bug for linking (#2892)
* fix(cli):Make the linkage in the root node modules

* fix(cli):Fix the index.tsx referencce
2022-09-08 22:22:51 -04:00
Ouwen Huang 6e3dc1e9d9 fix: enabled multiple studies in local mode (#2889) 2022-09-08 22:18:17 -04:00
Bill Wallace 0090605cf7 fix: various type issues and error handlings (#2831)
* fix(error):Fix a few error conditions, mostly around seriesNumber

* apply few fixes
2022-09-08 22:09:28 -04:00
Alireza 71f5fa8e2f fix: left right hotkeys and remove non working ones (#2922)
* fix: constant should be enums in cs3d

* remove non working hotkeys for now
2022-09-08 22:02:20 -04:00
Alireza aec48b065c fix: total dose unit (#2921) 2022-09-08 14:42:37 -04:00
Alireza 83264bb5a5 fix: imagScrollbar should not stop cine if not playing (#2920) 2022-09-08 14:42:25 -04:00
Alireza a16d7e1402 fix: bump packages for crosshairs to get fixed (#2917) 2022-09-08 09:03:37 -04:00
Bill WallaceandAlireza e1d366e1e1 feat: make hanging protocol work on displaySets instead of series (#2837)
* feat(HP): Apply HP to display sets, fix race condition

* fix: displaySetService no event not needed (#2912)

* fix various styles and renamings

* feat: refactored hp service

* fix: use HP service event for viewport grid

* remove unnecessary doc

* fix test

* apply review comment

* fix: segmentation creation

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2022-09-07 11:59:11 -04:00
Eric Taix 7c0756824e fix: modules name to reflect typescript usage (#2909)
* Prevent IntelliJ config file from being pushed to the repository

* Rename module's name to reflect the created file for a new mode

* Rename the module's name to reflect the filed created for a new extension which uses now typescript
2022-09-05 10:32:03 -04:00
Alireza 2639d90e5e fix: hanging protocol for the tmtv (#2882) 2022-08-19 19:35:29 -04:00
Salim Kanoun df6ddf1572 fix: bone and brain preset in tmtv (#2877) 2022-08-19 18:43:04 -04:00
Nigel 96986f992a bump: cornerstrone tools and core version to fix terser bug (#2881) 2022-08-19 18:42:20 -04:00
Alireza 0510b21634 fix: product versoin for v32 (#2876) 2022-08-18 19:23:45 -04:00
AlirezaandBill Wallace 10b4ed5f8c feat: new Total Metabolic Tumor Volume tmtv (#2866)
* fix: ptDisplaySet metadata problem

* fix: typo in xhrHeader field

* fix: temporary fix for crosshairs on reload data

* fix hotkey bug for input fields

* upgrade docusarusu to stable release

* circle ci node upgrade

* cypress node upgrade

* bump node in netlify

* bump node version

* remove versioned docs

* update resources

* fix: webpack injection of plugins

* fix meaningful label for panels

* add reviews and fix cli for creation

* copy over chunks if exists in the build

* edit templates

* edit templates

* fix yarn lock

* fix(plugin):Deploy on windows is broken

Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2022-08-17 15:13:59 -04:00
Alireza ae897c47e0 fix: typo in accept headers (#2858) 2022-08-02 15:23:35 -04:00
Arun Poudel f05c12dc0c docs: update HangingProtocolService (#2857)
Removed duplicate paragraph for custom attribute
2022-08-02 09:51:38 -04:00