Commit Graph
114 Commits
Author SHA1 Message Date
Bill Wallace 1df671e9ab feat: Add combined build (#5895)
* Add combined build

* Link script location update

* Security and validation fixes

* Allow specifying target path in PR description

* fix: Version match

* Fix build detection issue

* fix: Playwright deploy

* Separate out the branch merge guard

* Update docs and link info

* test: Update the layout change to wait for network idle

* Move audit late so the rest of the build can be worked on

* Add text with network check to ensure we see this change is updated

* Attempt to fix the mpr loading on ohif-downstream

* PR review comments

* Update docs

* Update to CS3D 4.20.0

* PR comments

* Add log on ohif-integration builds

* Update build test

* Removed unused space to kickoff build
2026-03-17 07:52:17 -04:00
Joe Boccanfuso d8d376edaf fix(security): Bump flattened version to address CVE-2026-32141. (#5897) 2026-03-13 15:25:21 -04:00
Joe Boccanfuso 7b5d0ce40e fix(segmentation): Display "No description S:{series number} {modality}" for segmentations with no label. (#5874)
* Bump CS3D dependency to get the fallbackLabel field additions.
2026-03-12 18:39:14 -04:00
Joe Boccanfuso d015b2e32a fix(security): Bump tar version to address CVE-2026-31802. (#5893) 2026-03-11 20:53:17 -04:00
Joe Boccanfuso 61a1fccd7d fix(security): Bump svgo and tar to fix vulnerabilities. (#5877) 2026-03-05 15:09:05 -05:00
Joe Boccanfuso be8e266a80 fix(security): Address various security vulnerabilities. (#5869) 2026-03-04 12:23:49 -05:00
Bill WallaceandJoe Boccanfuso 5370b9382e fix: Update CS3D 4.18.2 (#5837)
* Update CS3D 4.17.4

* fix: Update to cs3d 4.18.2

* audit issues

* audit fixes

* fix: redos issue

* Simplify dependencies to fix audit alerts.

---------

Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2026-02-26 09:49:44 -05:00
eeca1f7a7b fix: palette color 8 encoded 16 (#5823)
* fix: Detect 16 bit when 8 declared

* Update bun lock with dcmjs changes

* PR comments

* Update package versions

* fix: Palette color lookup table data for dcmjs parsed data

* fix: Published version should match (#5813)

* fix: Published version should match

* Move version number update to package.json

* fix: Netlify version number update

* Try updating platform app vesion too

* PR comments

---------

Co-authored-by: Joe Boccanfuso <109477394+jbocce@users.noreply.github.com>

* Update latest cs3d

* formatting

* fix: Use 64k instead of 0 for number of entries

* fix: Revert CS3D version to see test issues

* Updated screenshots for ArrowAnnotate.spec.ts.

* Update CS3D version

* fix: Update cs3d 4.17.4

* Update bun lock

* Update bun

* Downgrade to CS3D 4.17.2 to try to release

---------

Co-authored-by: Joe Boccanfuso <109477394+jbocce@users.noreply.github.com>
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2026-02-23 17:24:33 -05:00
Joe Boccanfuso 928d592333 chore(security): Updates for running bun audit during CI and dependabot PR version update settings (#5835)
* chore(security): Update circleci config to only run bun audit for lockfile changes.

* Switched to eslint 9.39.3 for compatibility with .eslintrc.json.

* Disabled all dependabot pull requests for bun and npm version updates.
2026-02-23 16:37:56 -05:00
Joe Boccanfuso 27229609cd fix(security): CVE-2026-27212 patched. Various dependency updates as a result of CVE-2026-26996. (#5830)
fix(security):  CVE-2026-27212 patched.
Various dependency updates as a result of CVE-2026-26996.
Ultimately CVE-2026-26996 was ignored because it is only exposed in itk-wasm via CLI and OHIF's other use of minimatch is limited to build/dev environments.
2026-02-20 17:25:06 -05:00
Joe Boccanfuso 3d59c0d9d3 fix(security): Bump tar to 7.5.9 and lerna to 9.0.4 to fix CVE-2026-26960. (#5824)
* fix(security): Bump tar to 7.5.9 and lerna to 9.0.4 to fix CVE-2026-26960.
Bump sharp to 0.34.5 to fix tar-fs vulnerabilities.

* Update node version to 20.19.0 in circleci config. Needed for lerna and cypress tests.

* Now installing bun for cypress tests in circleci config.

* Use node version 20.19.0 in netlify config.
2026-02-18 16:46:02 -05:00
dependabot[bot]andJoe Boccanfuso f590fc05a8 chore(deps): bump webpack from 5.95.0 to 5.105.0 (#5795)
---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2026-02-13 07:03:10 -05:00
dependabot[bot]andJoe Boccanfuso 4e9b5c2e22 chore(deps): bump diff from 4.0.2 to 4.0.4 - OHIF-2449 (#5731)
* fix(security): Use resolution for diff package to patch CVE-2026-24001.

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2026-02-11 08:24:34 -05:00
dependabot[bot]andJoe Boccanfuso b8adfdfc84 chore(deps): bump lodash-es from 4.17.21 to 4.17.23 - OHIF-2441 (#5736)
* fix(security): Moved react-color dependency to default extension because it is only used there.
Addressed CVE-2025-13465 by adding lodash-es as a resolution.

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2026-02-10 11:15:21 -05:00
dependabot[bot]andJoe Boccanfuso 02f99d5638 chore(deps): bump lodash from 4.17.21 to 4.17.23 - OHIF-2438 (#5744)
* fix(security): Update lodash to 4.17.23 using a resolution.

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2026-02-10 10:04:20 -05:00
Joe Boccanfuso 94c9e162f3 fix(security): Use a resolution for axios to address CVE-2026-25639. (#5793) 2026-02-09 16:43:50 -05:00
Bill Wallace 48f2f6fb13 fix(HistoryMemo): Segmentation delete wasn't remembered (#5775)
Will address a few more comments in a separate PR released after this one into 3.13

* fix(HistoryMemo): Segmentation delete wasn't remembered

* Temporary add of package.json linking

* fix: Use newer dcmjs version and delete segmentation with history cs3d
2026-02-05 11:49:49 -05:00
Joe Boccanfuso 512aa3b07f fix(jump-to-label-map): Use undefined for viewportId for arrow navigation. (#5774)
* Update to CS3D 4.15.28.
2026-02-04 16:12:41 -05:00
Joe Boccanfuso 9a97095d5c chore(deps): Update cornerstonejs dependencies to 4.15.24. (#5764) 2026-01-30 13:53:28 -05:00
Joe BoccanfusoandBill Wallace 06612fe177 fix(TMTV): Consider blend mode when adding segmentation representations. OHIF-2416, OHIF-2369 (#5735)
* Updated screenshots for failing tests due to FOV improvements.

---------

Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2026-01-27 08:47:29 -05:00
Joe Boccanfuso 4a1f509865 fix(microscopy): Update microscope to 0.48.17 to fix a measurement exception. (#5710)
* Added documentation for locally linking dicom-microscopy-viewer.
2026-01-15 21:24:31 -05:00
Joe Boccanfuso 612ced0ea1 chore(deps): update CS3D to 4.15.9 to fix OHIF issues 5656 and 5639. (#5714) 2026-01-14 16:48:55 -05:00
Joe Boccanfuso 82e6a18735 fix(segmentation): List surface representations in the segmentation table for 3D views. (#5700)
This was done by using an array of representation types instead of a single type for a panel.
The first element of the array is the primary type of the panel, and the rest are secondary types
that can also be displayed in the panel.

PR feedback:
- added test to check number of segments in side panel for 3D only view
- fixed jumping to segment in 3D only view
- fixed exception when adding contour segment in 3D only view
2026-01-13 15:57:44 -05:00
Joe Boccanfuso aba4855276 fix(segmentation): Update cornerstone dependencies to fix a segmentation exception after capture. (#5701) 2026-01-12 07:29:04 -05:00
dependabot[bot] 00d04162b2 chore(deps): bump react-router from 6.30.1 to 6.30.3 (#5704) 2026-01-09 14:53:01 -05:00
Joe Boccanfuso 6931c6b7fa chore(deps): update cs3d dependencies (#5688) 2026-01-05 13:51:23 -05:00
Joe Boccanfuso ca364a3af7 fix(security): update qs package to fix vulnerability CVE-2025-15284 (#5686)
fixes: qs's arrayLimit bypass in its bracket notation allows DoS via memory exhaustion
2026-01-05 12:23:34 -05:00
Joe Boccanfuso 3440f66ebd fix(segmentation): Update cornerstone dependencies to fix segment visibility issue. (#5664) 2025-12-18 13:35:29 -05:00
658994c854 fix: prevent annotation from appearing in active viewport when switching series with different Frame of Reference UID (#5630)
* fix: prevent annotation from appearing in active viewport when switching series with different Frame of Reference UID

* refactor: extract viewport update strategies

* Update version and use nearest orientation viewport

---------

Co-authored-by: trenser-belbin <belbin.kunjumon@prenuvo.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2025-12-18 12:02:52 -05:00
Alireza 2de81efa7e fix: preclinical mode not working (#5631)
* fix(ViewportWindowLevel): add null checks for volumeActor in opacity functions

* refactor(ViewportWindowLevel): register histogram worker at module load and optimize scalar data retrieval

* fix(Preclinical4D): add null check for viewportId and set frame rate for cine playback
2025-12-15 21:15:11 -05:00
Bill Wallace 4471416c30 fix: sculptor tool fixes (#5595)
Note: FOSSA check is invalid, but we don't have the ignore FOSSA version included.

* fix: sculptor tool fixes

* Add yarn

* update vtk.js version as well to match
2025-12-02 09:49:09 -05:00
dependabot[bot]andJoe Boccanfuso 6d6ce0ddae chore(deps): bump mdast-util-to-hast from 13.2.0 to 13.2.1 in /platform/docs (#5602)
* Fix node-forge security alerts as well.

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2025-12-02 09:08:43 -05:00
Bill Wallace 57205703bb Fix contour annotations RTSS saving (#5545)
* [WIP] Fix contour annotations RTSS saving

* fix: Export image sop image reference provider

* Fixes for download with filename

* Updates to fix metadata issues with CS3D

* Updates to save menu

* Fixing some additional re-save metadata

* Add support for saving with predecessor image sequence

* PR comment fixes

* fix: Load RTSS after save

* fix segmentation save

* fix load of mixed seg/rt studies

* Use frame module to get information on the frame shown

* Fix study browser to use instances.length when numImageFrames not present

* fix: Load of display set split from multiple non-FOR referenes

* Fix RT and SEG applying to wrong series because of using
referenced series sequence without checkout sop instances

* Fix save seg

* Update to released CS3D versions

* test: Add revokeObjectURL to test download blob

* Add hard dependency on mode-basic to fix build order issues

* fix: build

* Try to fix build segmentation

* PR comments

* PR comment update
2025-11-21 13:07:26 -05:00
Joe Boccanfuso 5c17c262ea fix(SegmentationStyle): Fix inactive contour visibility and styling. (#5563)
* Opacity, fill and outline properties for active and inactive contours
are now consistent with those for label map segmentations.
The properties for inactive segmentations are applied to BOTH
inactive contours and label maps.

* Activate the selected segmentation for a type when the alpha, outline width, or fill/outline visibility is changed.
2025-11-19 17:55:53 -05:00
Joe Boccanfuso 834ae3c762 fix(interpolation): Auto accept interpolation when the interpolation process is completed. (#5555)
* Update Cornerstone3D packages to 4.9.1.
2025-11-11 08:19:45 -05:00
Vinícius Alves de Faria Resende 29bd87c8c0 fix(SegmentationTools): [Bug] Changes of brush/eraser radius with hotkey do not reflect on segmentation tool (#5535) 2025-11-05 10:34:41 -05:00
Joe Boccanfuso 000e42e9a6 fix(security): Exact versioning and docs dependabot alerts (#5536) 2025-10-30 16:04:19 -04:00
Vinícius Alves de Faria Resende 76f7d4e23a fix(3DSegmentation): [Bug] The viewports become blank when loading the seg file in advanced layout after closing the seg file from any other advanced layout (#5505) 2025-10-28 08:52:12 -04:00
Joe Boccanfuso 1f11c83006 fix(security): Addressed dependabot alert CVE-2025-59288 concerning playwright (#5527) 2025-10-27 15:16:43 -04:00
Ibrahim a1544432db feat(jpeg2000): Add 16-bit RGB support to JPEG2000 decoder (#5519) 2025-10-23 09:11:54 -04:00
Bill Wallace 503780247c fix: Pass the correct sop uid + frame for rehydration to prevent associating rehydrated measurements with the wrong data (#5506)
* fix: [#2404] by passing the right sop uid map

* Update PR with requried CS3D fixes

* Update to released versions - had wrong release number
2025-10-20 11:23:26 -04:00
Joe Boccanfuso 170e860aa1 fix(segmentation): Lock all rehydrated segmentation segments when panelSegmentation.disableEditing is true. (#5503)
* fix(segmentation): Lock all rehydrated segmentation segments when panelSegmentation.disableEditing is true.

* PR feedback.

* PR feedback.

* Added tests for disableEditing and utilities for simulating drag operations.

* Update bun.lock file after merging master.
2025-10-17 22:14:31 -04:00
Joe Boccanfuso c7d2017f08 fix(security): Use exact versioning for dependencies in package.json files. (#5494)
Added bun audit security check in build process.
Removed bun caching.
2025-10-14 16:23:36 -04:00
Joe Boccanfuso efe97cd01d chore(deps): Update cornerstone3D dependencies. (#5479) 2025-10-09 16:51:34 -04:00
Joe Boccanfuso 84f27593a0 chore(deps): Update Cornerstone 3D to 4.5.3. (#5473) 2025-10-08 10:30:27 -04:00
Joe Boccanfuso 377d5e2fb6 chore(deps): Update cornerstone dependencies. (#5470) 2025-10-07 19:18:10 -04:00
Bill WallaceandIbrahim 9ad0d7fc8c feat: Add inherit from basic/longitudinal modes (#5435)
Co-authored-by: Ibrahim <ibrahim.mdev@gmail.com>
2025-10-01 14:31:26 -04:00
Joe Boccanfuso a46b00f76b chore(deps): Update cornerstone3D to 4.3.14. (#5450) 2025-09-30 15:07:13 -04:00
Vinícius Alves de Faria Resende 12ac509c40 test(SegmentationService): Adding 98.63% of test line coverage to Segmentation Service through unit tests (#5421) 2025-09-30 13:49:13 -04:00
Joe Boccanfuso 80f314a422 fix(security): Removed dependency on tar-fs by removing dependencies on storybook and sharp. (#5438) 2025-09-28 22:28:06 -04:00