* Add scoord3d parse / display tool to v2
* Update measurement panel with sr measurements
* Update measurement panel to display read only items
* Cleanup debugger statement
* Check for empty measurement
* fix SCOORD3D coordinates
* Update getRenderableData.js
* fix scoord3d coordinate transformation
* implement logic to detect the ReferencedSOPInstanceUID if missing in the measurement. Fix also world to IJ coordinates.
* Fix broken unit test / import
* fix comment style
* Init tools only once
* restore default config dcmjs server
Co-authored-by: igoroctaviano <igoroctaviano@gmail.com>
* Enable study prefetcher and expose configs
* Fix progress for all images
* Enable study loading listener
* Add new default for displaying progress bar for series
* Use events instead of redux to improve performance
* Add documentation, resolve issues with different datasets
* CR Updates
* CR Updates
* CR Updates & Resolve issue when activating both stack and study prefetch
* Add upward and update display set logic
* Add new behavior to prefetching orders
* Rollback display set check and activate cache check
* Remove prefetch check
* Check if displayset has images
* Debounce check cache events
* Remove usued debounce flags
* Ignore prefetching same image
* Use new image instead of image rendered
* Continue prefetch after cache check
* Update prefetch logic after checking cache
* Remove log
* Update displayset count default to 3
* Update netlify config
Co-authored-by: Alireza <ar.sedghi@gmail.com>
* Re #2259: highlight series thumbnails border for active series (series in the active viewport)
* Re #2259: add the warning icon also on the active viewport as an overlay
* Sort based on SeriesNumber and SeriesDate/SeriesTime.
* Harden, and perform final sort in algorithm if last N entries have the same SeriesNumber.
* Switch to insertion rather than sorting as sorting is too slow. Reimplement low priority sorting into new insertion method.
* Fix local file viewing.
When we have multiple SEGs/RTSTRUCTs we intend to load the most recent
by default.
BREAKING CHANGE: 🧨 However we start to load once the first set of metadata arrives. We need
to wait until all series metadata is fetched.
✅Closes: #1715
Co-authored-by: James Petts <jamesapetts@gmail.com>
* Filter segs and fetch correct metadata.
* Initiate seg loading logic on series load into viewport. Need to write.
* Automatic consumption of SEG functional.
* Pull in master.
* Fix issues after pulling in master.
* Clean up old segmentation handlers.
* WIP
* WIP
* Poppulate viewport with metadata.
* Show hide/segmentation in react-vtkjs-viewport.
* feat: 🎸 View segmentations in vtkjs viewport
* Filter segs and fetch correct metadata.
* Initiate seg loading logic on series load into viewport. Need to write.
* Automatic consumption of SEG functional.
* Pull in master.
* Fix issues after pulling in master.
* Clean up old segmentation handlers.
* WIP
* WIP
* Poppulate viewport with metadata.
* Show hide/segmentation in react-vtkjs-viewport.
* feat: 🎸 View segmentations in vtkjs viewport
* Rebase on master.
* format format format
* add basic extension parts
* Updated yarn lock
* Fetch derived/referenced displaysets in sidepanel
* Add buttons, expose seriesDescription, write notes for Danny.
* Add growcut tool extention. -> Move to a seperate repo.
* Change some text fields.
* expose dialog provider
* hide draggable area
* No pointer events for now; need to revisit
* Don't filter seg from the outset for now
* fiddling about
* fix path to series data
* fix logic to determine next available labelmapindex
* Ability to swtich between labelmaps
* Return a promise so we can make sure our labelmap is loaded before pulling metadata
* Better UI to toggle labelmaps
* Fix accidental untoggle of active labelmap for ui
* Remove brush tool from cornerstone extension
* Add cstools in preInit for seg extension
* Add buttons for seg magic
* Hide the measurements panel for now
* Slightly better seg/scissor icons
* Add eraser
* ability to switch segments
* seg color / switcher
* Fix vtk labelmap cache.
* sidepanel should scroll if there's overflow
* Use a fancier range slider
* Slightly prettier buttons
* Push in progress
* A bit more reactive; handle no-meta
* Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0
* chore: kickstart preview
* Fix conflict issues
* Refactor panel
* Isolate increment functions
* Wip segment table
* Hide selector and add scroll to segmentation
* Increase width of segment description
* Hide not used items
* Add new select for segmentations
* Align ui
* Fix default segmentation
* Fix broken import test
* Get measurements panel back and add spacing to grouped buttons
* Hide brush and selector and refresh when switching segmentations
* Add pointer events back and fix broken tests for measurement table
* Update segment list when switching humbnails
* CR Update: Minor UI adjustments
* CR Update: Set active segment
* Move components to components folder
* Add new settings ui
* Integrate configuration
* Improve styles
* Float numbers
* Improve css
* Refresh settings menu if side panel changed
* Fix settings rendering logic and remove comments
* Extract components
* Remove not used tools
* Remove non used extension
* Use style variables and remove comments
* Remove non used dep from lock
* Remove tools
* Remove segmentation from toolbar
* Add todo and brushradius from config
* Fix packagejson growcut import
* Remove webpack config already defined in parent
* Update package json description
* Change component name to british english to us
* Improve prop types
* Rename cornerstone label map event
* Scope css
* Extract and add doc to helper
* Update jsdocs for getDerivedDatasets
* Add proptypes and cr updates
* Update tablistitem proptypes
* config is readonly, rollback destructuring
* Remove event for side panel
* Add jsdocs for util
* Extract getimageid to studymetada
* Use ohif log instead of console
* Remove specific style from side panel
* Fix default props for brush radius
* Descructure configuration props from settings component to avoid invalid props
* Update proptypes to be required (settings)
* Update readme
* Remove commandsmodule
* Get configuration module inside the component
* Set selected segment
* Rename extension and use modality to filter
* Fix for failing tests (#1423)
* hello world
* Finish rebase for Igor.
* Re-fix cornerstoneTools version that got messed up in merge.
* Fix reactivity of isDisabled, write implementation for the SEG panel.
* Nuke yarn.lock to stack CST to 4.12.0
* Remove debugger statements.
* fix: bump cornerstone-tools version to address toFixed issue
* test: force tests for MISTER^MR to navigate to study directly
* test: remove eraser tool test
* test: count is off by one
* test: don't save SR state for the time being
* test: disable more tests
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com>
Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
* Instance metadata plus metadata provider overhaul.
Fix consumption of wado-uri urls
fallbacks + datatype agnosticism.
WIP DICOMify things.
fix various issues with naturalized variable naming migration.
Remove metadata provider.
Fix consumption of multiframe images and addition of CWIL metadata.
Fix strange build issues.
Fix CWIL style windowWidth to array from naturalized DICOM.
Fix PT, CT, CR and DX issues for cornerstone + DX issues for vtkjs.
Move color palette fetching down to the natuaralized JSON level.
Remove unused StudyMetadataSummary
Remove redundant dicom metadata dictionary.
Working local + json routes.
Fix SR read.
Finished first round of testing + cleaned up debugging etc.
* data => metadata for instance naturalizedJSON
* Update dcmjs version
* Correct github isssues.
* Fix erroneously replaced files.
* Danny's recommended changes.
* Instance metadata plus metadata provider overhaul.
Fix consumption of wado-uri urls
fallbacks + datatype agnosticism.
WIP DICOMify things.
fix various issues with naturalized variable naming migration.
Remove metadata provider.
Fix consumption of multiframe images and addition of CWIL metadata.
Fix strange build issues.
Fix CWIL style windowWidth to array from naturalized DICOM.
Fix PT, CT, CR and DX issues for cornerstone + DX issues for vtkjs.
Move color palette fetching down to the natuaralized JSON level.
Remove unused StudyMetadataSummary
Remove redundant dicom metadata dictionary.
Working local + json routes.
Fix SR read.
Finished first round of testing + cleaned up debugging etc.
* data => metadata for instance naturalizedJSON
* Update dcmjs version
* Correct github isssues.
* Fix erroneously replaced files.
* Danny's recommended changes.
* Update JSON CI
* Update casing of import.
* Fix jump for SR.
* Fix unit tests for measurements service
* Fix json CI test.
* fix: update yarn lock
* Fix local non-encapsulated pdf view
* CI updated to new sucess message.
Co-authored-by: Danny <danny.ri.brown@gmail.com>
* Move DICOMSR to @ohif/core
* refactor: 💡 Move DICOMSR code to @ohif/core project
We've just merged support for DICOM Structured Reports. Today, support
for this feature lives in the @ohif/viewer project in it's lib folder.
Ideally, it should be moved to @ohif/core and given a clear public API
and unit tests.
Closes: #1282
* Update imports
* CR Update: Update imports
* feat: 🎸 DICOM SR STOW on MeasurementAPI
Closes: #758
* feat: 🎸 Adding the dataExchance from DICOM SR
* feat: 🎸 Fix some issues and get the retrieve measurements working
* feat: 🎸 Preventing measurement tool helpers to broke because the data is not Number (it comes as string from dcmjs)
* feat: 🎸 Adding a button to start testing SATE functionality
* feat: 🎸Small fixes into the code
* feat: 🎸 MAke sure we get latest SR in the study, even on lazyLoad mode
* Revert "feat: 🎸 Preventing measurement tool helpers to broke because the data is not Number (it comes as string from dcmjs)"
This reverts commit 4b3a1efb5810487d2319826fd59c03d779882b5e.
* feat: 🎸 Make sure after sync we update the viewports and also that annotation tools are set to passive, so it can be drawn in the viewports
* feat: 🎸 Remove console logs and start using OHIF.log
* feat: 🎸 Refactor measurement table to use Snackbar service of messages and make sure we only show save button if server type is dicomWeb
* feat: 🎸 Refactor to remove mocked wadoRoot and use server
* Fix to expose error once we can't save the SR
* Update DCMJS into latest dev version
* Update dcmjs with latest fixes
* Fix PR callouts
* Logging error on MeasurementReport creation
* Preventing from breaking on non supported tools and also warning that some toolType is not sopported
* Small error message update
* Expose better the errors and when we have unsopported tools into the measurements
* Renaming variable
* Expose dcmjs tool support check
* Change the way we warn the unsupportedTools
* Adding style to the button
* Small change on button style
* Fix git conflicts
* Fix after merge with latest master
* Fix after merge with master, btn was not clickable
* Fixing callouts
* Adding util functions into files and refactor with JSDocs
* Refactoring code, adding some basic JSDocs
* Bump dcmjs with latest version and fixes
* JSDocs and small refactors
* yarn lock file after dcmjs update
* Remove unused parameters
* Registering a plain copy of server into measurementAPI
* Small refactor
* Start changing from toolType to toolName
* Rename a function to get instanceMetadata
* Adding error if server is not DICOMWeb on retrieve
* Move snackbar outside of UI component and use UINotificationService
* Refactor and JSDocs
* Small fixes on JSDocs (style)
* Remove unused import
* Improve JSDocs on MeasurementApi
* Remove refactor leftover
* Improve JSDocs and propTypes
* JSDocs and small refactors
* Fix ExtensionManager bug and add test to bandaid
* Add tools configuration to extension manager preinit
* Fix reducing of configs
* Merge internal with external configs
* Merge internal with external configs
* Remove dialog from init in measurementstable
* Testing injected configuration
* New way to set config
* Add new prop to dialog provider to allow disabling last position
* Remove code from preinit in cornerstone
* Add new prop to dialog provider to allow disabling last position
* Add centralize to dialogs
* Reorder dialogs when adding them
* Fix draggable styles (cursor)
* Remove repositioning methods from labelling flow and remove overlay from labelling manager
* Fix empty array being set in bringToFront
* Add new command to update table and pass commands manager to modules/preinit hook
* Ad UIContextMenu service / factory
* Use new contextmenu service in measurementspanel extension
* Use dialogs for arrow annotate in default
* Remove positioning funcionality from tool context menu
* Add context menu service
* Pass commandsModule to extension
* Update edit description dialog and simple dialog to position relative
* Remove style code from labelling flow and manager
* Remove eventdata from labelling
* Remove labelling code from measurement init
* Add commandsmanager to provider
* Update contextmenu provider and service
* Add touchstart and mouseclick to hide contextmenu
* Hide labelling if click/touch
* Remove labelling and context menu dead code
* Fix undefined bug if ViewerMain grid has no children
* Fix broken prop on context menu
* Update commandsmodule based on master
* Fix broken configuration
* Update script tag config
* Remove cornerstone from toolcontextmenu
* Remove cornerstone from toolcontextmenu
* Split labelling and context menu providers
* Split labelling and context menu providers
* Update test
* Destructure extensions into new array
* CR Update: Move default arrow config to cornerstone instead of default
* CR Update: Fix app configuration props structure
* CR Update: Fix app configuration prop in script tag and extract commands manager from providers
* CR Update: Create custom providers to use commandsManager
* CR Update: Use services directly in measurementspanel
* CR Update: Pass components to providers
* CR Update: Remove position from dialog
* CR Update: fix dialog prop check
* CR Update: Fix comments
* CR Update: Update documentation
* CR Update: Add test default configuration
* CR Update: Add default empy array to extensions
* CR Update: Update i18n configuration all ot match current function configuration
* CR Update: Add defaults to injected dependencies in configuration and extension configuration
* CR Update: Add defaults to configuration with no args
* Update documentation
* CR Update: Add default for tools
* CR Update: Update config object to i18n
* CR Update: spread defaults
* CR Update: Add tool configuration example to cornerstone extension
* CR Update: Add tool configuration to netlify (testing)
* CR Update: Remove netlify config for tools
* CR Update: Rollback changes to i18n to be fixed later
* CR Update: Update documentation and pass whole cornerstone config object instead of tools key
SEE: https://www.conventionalcommits.org/en/v1.0.0/#commit-message-with-both-and-breaking-change-footer
BREAKING CHANGE: modifies the exposed react <App /> components props. The contract for providing configuration for the app has changed. Please reference updated documentation for guidance.
* feat: 🎸 Only allow reconstruction of datasets that make sense
Only allow reconstruction of datasets which are imaging data, that have
frames in the same orientation, with the same size and make sense to be
reconstructed in 3D.
Closes: #561
* refactor: 💡 React components to consume appConfig using Context
React components to consume app configuration using React Context and
React Hooks. Non React components to continue using global variable
window.config. Related documentation also changed.
Closes: #725
* refactor: 💡 Removing unecessary code
On current React component there is no need to import useContext method
from React, so, removing it.
* refactor: 💡 Code review
Code review. Minor changes based on review inputs and moving userManager
to an init method
BREAKING CHANGE: #725Closes: #725
* docs: don't include implementation detail in docs
* docs: don't include implementation detail in docs
* docs: no need to specify implementation details in employment recipe
* docs: no need to specify implementation details in deployment recipe
* init
* more shifting
* Move @babel dependencies up to workspace root
* Begin updating dependent libraries to use sync'd webpack builds w/ watches
* Commit changes before a long weekend
* Split packages into platform and extensions
* Consolidate how/where we specify file/module type entrypoints
* Make it possible to pass in extensions as App props
* Resolve viewer's modules
* Target for UMD bundle
* Add Webpack Stylus loader
* Provide WebPack build options for microscopy, vtk, and ui
* Better entrypoint for extensions
* Push changes up to switch PCs
* Fix ESM symlink build for Viewers
* Shift docs to root
* Specify additional lerna config props
* Begin providing basic readme info
* Rename example extension folder
* Shift links to bottom of doc
* First attempt at a netlify deploy preview
* Attempt to fix deploy preview build
* push workspace enabled to initial command; remove second yarn install; use npx to call gitbook cli commands
* Try to use global gitbook-cli
* Export node_modules path
* More agressive with modifying PATH
* Follow deploy log output advice
* try again to set bin path
* Try swapping bash with a new shell
* Try bash -l instead of exec bash
* Annd let's try again
* and again
* We may have figured it out johnny, boy
* We need to pull cornerstone-wado-image-loader files from hoisted node_modules
* Attempt to fix ticks/escapes
* Change copy syntax; try running tests on viewers from root for circleci
* Lower version to match circleci image
* Try alternative jest-canvas-mock location and version file syntax
* Run version command instead of calling node directly
* Try alternative jest transform
* Set path and enable workspaces
* Add codecov flags
* Use cpx so our copying finishes?
* Get all platform unit tests to run
* Run and report individually and in parallel
* Try once relying on codecov yaml to split w/ flags
* Add projects to split by flags
* Generate separate reports
* Trigger codecov after everything has finished running; these may not support flags
* Use recommended flags from issue comments for codecov
* Fix typo
* Remove clear flag
* Shift back to calling codecov from root
* Generate example for codecov issue
* Try fixing paths
* Simplify
* Try using codecov orb
* Bump circleci version
* Upload core and viewer
* Use full string paths
* Remove individual codecov calls
* Fix dir
* Combine files before upload
* Escape anchors
* tryfix syntax
* Escape string literal
* Combine lines to reduce path
* long paths
* Use home alias
* Fix filename
* Try to see the contents of our cat'd file
* Also upload `core`
* Try running with aliased folder
* Fix path; split PR and Merge unit tests into separate jobs
* Set default threshold
* Fix typo
* Changing to scoped package names
* Adding note
* Catch more updates
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.0
- @ohif/extension-dicom-html@0.0.4-alpha.0
- @ohif/extension-dicom-microscopy@0.0.9-alpha.0
- @ohif/extension-dicom-pdf@0.0.8-alpha.0
- @ohif/extension-vtk@0.1.4-alpha.0
- @ohif/core@0.11.1-alpha.0
- @ohif/i18n@0.2.3-alpha.0
- @ohif/ui@0.2.18-alpha.0
- @ohif/viewer@0.0.22-alpha.0
* Clean up primary readme
* Support for dev and dev:* commands
* Shift build command; satisfy default PWA build
* Remove old scripts
* Clean up UI to set webpack scripts
* Tidy up project links
* Clean duplicate code in UI project
* Update UI project's docs
* Clean up ui and i18n config
* Reduce duplicate code in `@ohif/core`
* Fix @ohif/ui versions
* bump @ohif/core versions
* Redux testkit dep
* Remove unused/duplicate config files for projects/packages
* ohif-core --> @ohif/core
* Safer publish command
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.1
- @ohif/extension-dicom-html@0.0.4-alpha.1
- @ohif/extension-dicom-microscopy@0.0.9-alpha.1
- @ohif/extension-dicom-pdf@0.0.8-alpha.1
- @ohif/extension-vtk@0.1.4-alpha.1
- @ohif/core@0.11.1-alpha.1
- @ohif/i18n@0.2.3-alpha.1
- @ohif/ui@0.2.18-alpha.1
- @ohif/viewer@0.0.22-alpha.1
* test version bump
* Add global prettier config
* chore(release): publish %s [skip ci]
- @ohif/viewer@0.0.22-alpha.2
* test lerna publish
* Update package.jsons
* Fix build scripts
* catch changes
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.2
- @ohif/extension-dicom-html@0.0.4-alpha.2
- @ohif/extension-dicom-microscopy@0.0.9-alpha.2
- @ohif/extension-dicom-pdf@0.0.8-alpha.2
- @ohif/extension-vtk@0.1.4-alpha.2
- @ohif/core@0.11.1-alpha.2
- @ohif/i18n@0.2.3-alpha.2
- @ohif/ui@0.2.18-alpha.2
- @ohif/viewer@0.0.22-alpha.3
* fix eslint issues caused by eslint 6 and our react-app config
* Publish with canary tag
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.3
- @ohif/extension-dicom-html@0.0.4-alpha.3
- @ohif/extension-dicom-microscopy@0.0.9-alpha.3
- @ohif/extension-dicom-pdf@0.0.8-alpha.3
- @ohif/extension-vtk@0.1.4-alpha.3
- @ohif/core@0.11.1-alpha.3
- @ohif/i18n@0.2.3-alpha.3
- @ohif/ui@0.2.18-alpha.3
- @ohif/viewer@0.0.22-alpha.4
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.4
- @ohif/extension-dicom-html@0.0.4-alpha.4
- @ohif/extension-dicom-microscopy@0.0.9-alpha.4
- @ohif/extension-dicom-pdf@0.0.8-alpha.4
- @ohif/extension-vtk@0.1.4-alpha.4
- @ohif/core@0.11.1-alpha.4
- @ohif/i18n@0.2.3-alpha.4
- @ohif/ui@0.2.18-alpha.4
- @ohif/viewer@0.0.22-alpha.5
* Simplify build
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.5
- @ohif/extension-dicom-html@0.0.4-alpha.5
- @ohif/extension-dicom-microscopy@0.0.9-alpha.5
- @ohif/extension-dicom-pdf@0.0.8-alpha.5
- @ohif/extension-vtk@0.1.4-alpha.5
- @ohif/core@0.11.1-alpha.5
- @ohif/i18n@0.2.3-alpha.5
- @ohif/ui@0.2.18-alpha.5
- @ohif/viewer@0.0.22-alpha.6
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.6
- @ohif/extension-dicom-html@0.0.4-alpha.6
- @ohif/extension-dicom-microscopy@0.0.9-alpha.6
- @ohif/extension-dicom-pdf@0.0.8-alpha.6
- @ohif/extension-vtk@0.1.4-alpha.6
- @ohif/core@0.11.1-alpha.6
- @ohif/i18n@0.2.3-alpha.6
- @ohif/ui@0.2.18-alpha.6
- @ohif/viewer@0.0.22-alpha.7
* Split version and publish
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.7
- @ohif/extension-dicom-html@0.0.4-alpha.7
- @ohif/extension-dicom-microscopy@0.0.9-alpha.7
- @ohif/extension-dicom-pdf@0.0.8-alpha.7
- @ohif/extension-vtk@0.1.4-alpha.7
- @ohif/core@0.11.1-alpha.7
- @ohif/i18n@0.2.3-alpha.7
- @ohif/ui@0.2.18-alpha.7
- @ohif/viewer@0.0.22-alpha.8
* Try simplify netlify build
* react-viewerbase --> @ohif/ui
* add test for stylus loader
* Try new way to specify publish path
* Use an output folder that won't be ignored
* Try move command
* fiddle with paths
* Dig for some information
* Make sure we're in root for our commands
* Remove discovery
* Setup script-tag example
* Fix typo
* Move config folder
* Update cornerstone extension to use shared/root webpack configs
* capture changes
* Update extension webpack configs
* Don't check in docz output
* Fix babel runtime resolution issue
* Simplify ui build steps
* Push in progress
* Shift directories
* Get viewer dev path to work
* Fix viewer commonjs build
* Fix build pwa config for viewers
* Make sure our package specific command can be called from root
* Update notes
* Fix imports and misc. merge notes
* Bump wado-image-loader version
* Switch up commands to remove webworkers copy
* Fix CI config
* Fix more broken package references
* Add react-dropzone
* Persist so e2e test can use
* Fix lockfile
* Use cypress orb to simplify CI
* Fix config
* Try again
* Install yarn latest for orb
* Install yarn a different way
* Wait on correct port
* Run tests in viewer project
* Fix cypress config
* Make Cypress happier - use default location
* Simplify e2e testing
* Capture UI changes since fork
* Catch core up
* Grab latest deps after merge
* Fix broken import
* Make sure cornerstone-wado-image-loader resolves to 3+
* Note regarding orbs
* Fix refresh on 404 routes
* Fix odd error for cornerstone-wado-image-loader
* Different target for UMD
* Simplify dev script
* Try to get fancy with netlify output
* Let's do it again
* Try to fix measurementTools issue
* See if we can get our lerna magic to work on merge to monorepo branch
Davide Punzo