Commit Graph
78 Commits
Author SHA1 Message Date
ohif-bot cd1d097957 chore(version): Update package versions [skip ci] 2023-06-12 18:34:02 +00:00
ohif-bot 866647ae79 chore(version): version.json [skip ci] 2023-06-12 18:33:58 +00:00
Joe Boccanfuso 694b4a3f4d chore(version): update cornerstone version (#3468) 2023-06-12 14:23:49 -04:00
ohif-bot 0e52169677 chore(version): Update package versions [skip ci] 2023-06-08 17:33:51 +00:00
ohif-bot b23cbc34dd chore(version): version.json [skip ci] 2023-06-08 17:33:48 +00:00
ohif-bot ca07ef2928 chore(version): Update package versions [skip ci] 2023-06-07 13:40:47 +00:00
ohif-bot 48aa945839 chore(version): version.json [skip ci] 2023-06-07 13:40:43 +00:00
ohif-bot 655ccd310e chore(version): Update package versions [skip ci] 2023-06-07 13:13:40 +00:00
ohif-bot 20275d7d08 chore(version): version.json [skip ci] 2023-06-07 13:13:36 +00:00
ohif-bot 9ee13860a2 chore(version): Update package versions [skip ci] 2023-06-07 12:38:24 +00:00
ohif-bot f43e45ab1a chore(version): version.json [skip ci] 2023-06-07 12:38:21 +00:00
ohif-bot ffaffbdfa3 chore(version): Update package versions [skip ci] 2023-06-07 01:54:54 +00:00
ohif-bot de35860ba6 chore(version): version.json [skip ci] 2023-06-07 01:54:51 +00:00
ohif-bot 6d7561946b chore(version): Update package versions [skip ci] 2023-06-06 21:47:27 +00:00
ohif-bot fd8a9599d7 chore(version): version.json [skip ci] 2023-06-06 21:47:23 +00:00
ohif-bot ef9363e8b9 chore(version): Update package versions [skip ci] 2023-06-06 20:11:21 +00:00
ohif-bot 77a8447ceb chore(version): version.json [skip ci] 2023-06-06 20:11:17 +00:00
Alireza fc8b948b0d chore(build): separate half and half for publish (#3446) 2023-06-06 16:02:59 -04:00
Alireza 828690cd3b chore(build): try to build demo and docs (#3434) 2023-06-06 13:34:26 -04:00
Alireza 4a17177d81 chore(bump): use cornerstone 3d 1.x (#3414)
* chore(bump): use cornerstone 3d 1.x

* yarn lock
2023-05-22 15:26:18 -04:00
Joe Boccanfuso c0fd4416ed fix(Measurement): fixed line dashing of measurements in various scenarios (#3407)
* fix(Measurement): fixed line dashing of measurements in various scenarios

For a StackViewport simply rely on the SeriesInstanceUID being part of the
tracked measurements or not.

For a VolumeViewport first check the image id of the current image in the viewport
and then check the SeriesInstanceUID (like for a StackViewport) if an id is returned.
To reliably get the id of the current image, listen for the VOLUME_VIEWPORT_NEW_VOLUME event.

* Changes for PR comments.
2023-05-18 20:59:33 -04:00
Joe Boccanfuso 045e54aa02 fix(Measurement): Use dashed lines for measurments of viewports where getCurrentImageId returns undefined (#3392)
* fix(Measurement): Use dashed lines for measurments of viewports where getCurrentImageId returns undefined

* Updated cornerstone3d packages

* Fixed code comment.

* Removed unused imports.
2023-05-16 10:02:10 -04:00
Alireza 84cb709b44 feat(panel and auth): fix study panel to not rely on priors and add token param to url (#3381)
* fix: multiframe

* fix the unnecessary use of prior since some servers dont like it

* add authentication via token in url

* add data citation

* add resources

* upgrade packages

* yarn lock

* apply review comments
2023-05-11 10:01:33 -04:00
Alireza 969e7698fa chore(bump cs3d): bump package and add caching to webpack (#3353)
* chore(bump cs3d): bump package and add caching to webpack

* remove test for now
2023-05-03 12:30:02 -04:00
Alireza eea0ed487b feat(dicomImageLoader): replace wado image loader with the new library (#3339)
* use new dicom image loader instead of cswil

new dicom image loader fails

update dicom image loader

update yarn lock

modify webpack

* update webpack

* fix webpack

* update package versions

* update package versions
2023-04-26 20:55:56 -04:00
Alireza 66863281c4 feat(RT): add dicom RT support via volume viewports (#3310)
* feat: initial RT support

* make the segmentation service work with representation data

* feat: make segmentation service work with representations

* fix rtss vis

* fix: rt hydration

* fix the rendering of rt names

* fix imports

* refactor: Modify status and click handling for hydration of RTStructures

Modify status and click handling for hydration of RTStructures by renaming `onPillClick` to `onStatusClick` in `OHIFCornerstoneRTViewport.tsx` and `_getStatusComponent.tsx` files. Also, update initial segmentation configurations in `PanelSegmentation.tsx` and simplify configuration changes and values for segmentation service in `SegmentationService.ts`. Finally, remove console debug in `CornerstoneViewportService.ts`.

* wip for highlighting contours

* refactor rt displayset code

* review code update

* update cornerstone dependencies

* refactor: Update license year, version number, and minor code cleanup

This commit updates the license year in several files, updates the version number in package.json, and contains minor code cleanup in two files.

* add bulkdataURI retrieve for RT

* fix package version

* apply review comments

* apply review comments

* apply review comments

* feat(panels): refactor and streamline segmentation configuration and inputs

Rewrote state hooks and streamlined the configuration input for `PanelSegmentation` to be more verbose and reusable. Included several new input types, including the `InputRange` component which now shows a fixed floating value based on the step provided. The `SegmentationConfig` component now works with dynamic values controlled by `initialConfig`. These changes should improve function usability and make the code more maintainable going forward.

* fix various bugs

* fix contour delete by upgrade cs3d version

* feat(viewport, inputNumber, segmentationConfig, orthanc): Implement minimum and maximum values for input number components, and useBulkDataURI for Orthanc configuration. Compare measurement view planes with absolute viewport view planes in Cornerstone viewport.

* update yarn lock
2023-04-26 12:21:08 -04:00
Bill Wallace 69d8e6a191 fix(SR): When loading DICOM SR, only one measurement is shown with no way to show others (#3228)
* fix: Make the cornerstone sR viewport show all measurements

* PR fixes

* PR fixes

* Add a DICOM SR hanging protocol

* Duplicate the hanging protocol for seg as well

* PR requested change

* PR requested changes

* PR fixes plus merge update fixes

* PR fixes and integration test fix

* PR - documentation
2023-04-25 17:25:10 -04:00
M.D 47c25f4364 feat(measurements): add CircleROI Tool (#3211)
* [refactor] measurement service mapping files - rename to .ts files

* [fix] RectangleROI - measurement service mapping _getReport() function - tool name fix

* [feat] added CircleROI tool from updated cornerstone3D

* [refactor] fix for typescript strong typing warnings

* [feat] cornerstone-dicom-sr extension - added CircleROI tool

* [feat] added toolbar button for CircleROI tool

* [doc] doc updates for CircleROI tool

* [update] library - dcmjs to 0.29.5

* [fix] roundNumber() function when given strings

* [fix] refactor after upgrading conerstonejs library 0.49.0

* yarn.lock file change
2023-04-17 08:23:03 -04:00
rodrigobasilio2022andAlireza 226244a26c feat(multiframe): enhanced support for multiframe dicom (#3164)
* Changes in cswil version and multiframe

* Minor changes

* wip

* Adding support for NM multiframe images

* Applying PR suggestions

* fixing package versions

* Restoring default.js config file

* Check if NM subtype is reconstructable

* Restore default.js values

* refactore code

* feat: add flag for strict zspacing

---------

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-03-31 22:21:16 -04:00
Alireza 4734b3bac6 fix(volumeLoad): should not have missing slices when loading (#3287)
* fix(volumeLoad): should not have missing slices when loading

* add review comments
2023-03-29 09:40:22 -04:00
Joe Boccanfuso ed7ded05db fix(Volume3DViewport): Replacing the volume 3D viewport with another reconstructable series (#3281)
* fix(Volume3DViewport) - Replacing the volume 3D viewport with another reconstructable series fails
- updated cornerstone3D core package dependency
- checked for null presentations when setting presentations
- added viewportIndex as a dependency for enabling and disabling an OHIFCornerstoneViewport

* PR feedback - removed viewportIndex useEffect dependency for enabling/disabling OHIFCornerstoneViewport
2023-03-27 15:03:16 -04:00
Alireza 4e94b588a7 fix(SegmentationPanel): should be able to hide and only show one segment (#3270)
* fix(SegmentationPanel): should be able to hide and only show one segment

* fix imports

* bump package versions
2023-03-22 12:44:52 -04:00
Braden Morley 3b6822e7b6 fix(ui): autoscroll to new measurement on measurement table (#3223)
Fixed scrolling for measurement clicks

changed import
2023-03-21 21:36:53 -04:00
Joe Boccanfuso 550918dd31 feat(VolumeViewport3D): add volumeViewport3Dd sample hp (#3241)
* feat(VolumeViewport3D)
- importing and using Cornerstone 3D's VolumeViewport3D viewport
- added mprAnd3DVolumeViewport hanging protocol
- allowed for W/L preset to be applied to a viewport

* Updated cornerstone core dependency

* Removed pan and zoom from the volume3d tool group so that tackballrotate is never dropped for that viewport.
Removed overlays from 3D volume viewport.
Throw an error and display a message whenever an unapplicable tool is selected.

* The default/initial orientation for a 3D volume viewport can now be set.
Using the 'interleaveTopToBottom' image load strategy for the 'mprAnd3DVolumeViewport' hanging protocol.

* Do not set orientation for stack viewport.
2023-03-21 16:09:50 -04:00
Bill Wallace b7fff77e17 fix(segmentation): failing to render SEG because it was on default tool group (#3222)
* fix: Segmentation service fixes for secondary volumes

* Remove toolgroupID in promptSeg
2023-03-10 13:57:23 -05:00
Alireza 38d452e17d feat(measurementService): use the new api for annotation manager in cs3d (#3206)
* fix OHIF to use the new api for annotation manager in cs3d

* bump package versions

* fix tests

* remove unnecessary code
2023-03-02 17:11:51 -05:00
Alireza 9b3f2e6638 chore: bump vtk version to fix rendering bug (#3192) 2023-02-22 21:51:33 -05:00
Bill Wallace 67fc3f733d feat(SR): Measurement adapter mappings and save to same series (#3140)
* feat: Add adapter mappings for RectangleROI and Angle and save same

PR comments

* fix: Rehydrate check on non core measurement adapters
2023-02-17 16:44:21 -05:00
Alireza 926290f69e feat: add more e2e tests for MPR and add test mode and extension (#3180)
* tests: add various e2e tests for MPR and measurements

wip

add cypress config

feat: add mode and extension for testing

add hp applied through search params

add MPR tests

apply review comments

add more e2e tests

update yarn lock

* fix unit tests failing
2023-02-17 15:04:07 -05:00
Bill WallaceandAlireza 8af0362d12 fix(typescript): rename services to fix typescript (#3165)
* fix: Rename services to lower camel case, hp, measure

* fix: Rename DisplaySetService instances to displaySetService

* fix: Rename CornerstoneViewportService to lower camel case

* fix: Added lower case segmentationService rename

* rename other services (#3166)

* rename uiDialogService

* rename toolGroupService

* rename uiNotificationService

* rename viewportGridService

* rename syncGroupService

* rename CornerstoneCacheService

* Fix a syntax error in hotkeys

* Fix a couple of rename issues that were missed

---------

Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-02-10 16:46:09 -05:00
Bill Wallace 980b44f18c fix(misc): Update the data source name, provide a /datasources example customization for debug (#3036)
* fix(misc):Update the data source name, provide  a /datasources

Update the imports for a few things to match, to avoid 2 versions

Fix the datasources name

pr:Make the data source selector configurable

* Updated data source selector page as requested

* PR fixes
2023-02-03 16:56:27 -05:00
Alireza 123e3a569b fix(Segmentation): bump packages to fix segmentation rendering (#3138)
* add test mode

* bump packages

* add reference lines

* update yarn lock

* fix netlify build

* fix num workers

* update year in doc
2023-02-03 09:33:28 -05:00
Joe Boccanfuso a997198587 fix: app-config settings are ignored in OHIF v3 (#3114)
* fix: app-config settings are ignored in OHIF v3
github issue #3051

Remove default route from baked in routes if showStudyList is false.

* fix: app-config settings are ignored in OHIF v3
github issue #3051

PR feedback - simply remove default route from the baked in routes.

* fix: app-config settings are ignored in OHIF v3
github issue #3051

PR feedback - updated CS3D tools version
2023-01-12 16:38:12 -05:00
Alireza 1d1b33224a feat: use wadors instead of streaming wadors for volume loading (#3109) 2023-01-11 07:19:27 -05:00
Alireza 42dca11ae3 fix: various bugs with v33 re cine and colors (#3052)
* fix various bugs

* feat: initial work for debug page

* change throw to console error for color lookup table

* update packages

* apply review

* apply review comments
2022-12-05 09:53:59 -05:00
Alireza 32bb7e4c1e fix: sr module and add URL docs (#3034)
* fix sr module and add docs

* bump version
2022-11-23 11:43:46 -05:00
Alireza 87eab39768 fix: remaining bugs for MPR and toolbar icon colors (#3026)
* feat: warn for overlapping segments

* fix: typo

* refactor mpr toggle and stack sync

* fix: wip for more general mpr

* fix: tool groups for mpr

* fix: changing of viewport id

* fix: viewport Id for the seg viewports

* fix

* update cornerstone version
2022-11-21 10:44:19 -05:00
AlirezaandErik Ziegler 83ea228d86 feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015)
* feat: add initial sop class handler for SEG

* feat: move segmentation service

* update segmentation service methods

* fix: viewport data structure

* feat: Add initial render for the DICOM SEG for each displaySet

* fix: various wrong architectural dependencies between services

* feat: initial separate SEG display in each viewport

* feat: refactore viewport action bar

* initial work for SEG hydration

* fix: various bugs regarding drag and dropping different viewports

* fix: rendering issues for multiple seg displaysets

* fix: bugs for thumbnail and hydration

* feat: fix the initial segment color

* update after rebase

* feat: initial design for the segmentation group table

* feat: initial new design for the segmentation panel

* feat: segmentation panel

* feat: make segmentation appear on all related viewports

* fix: segmentation load bug based on functional groups

* initial work for segmentation crosshairs

* fix: various stylings and functionality

* fix: various stylings for the seg panel

* fix: overflow styles

* feat: add more ui components

* feat: added segmentation config

* feat: add jump to segment

* feat: add jump to segment for DICOM SEG viewport

* fix: bugs after rebase

* feat: jump in segmentation viewport

* fix: mpr support for seg

* feat: add more icons

* feat: new icons

* feat: add new side panel

* feat: add segmentation config

* feat: add loading indicator to ohif

* feat: make hanging protocols follow matching rules for viewports

* feat: enhance drag and drop to be hanging protocol aware

* fix: mpr restore previous layout

* fix: crosshairs toggle

* fix: add auth headers to the dicom loader via dicomwebclient

* fix: bug for crosshairs toggle in mpr

* fix: seg viewport reusing old toolGroup

* feat: add loading animation with lottie

* fix: various bugs for Segmentation hydration in mpr

* feat: change outline alpha to outline opacity

* feat: loading indicator for seg viewport

* fix: various segmentation group styles

* fix: local mode for seg

* feat: add animation for the highlight

* fix: loading indicatro to show segment indices

* feat: enhance modality drop down ui

* fix: panels

* fix: download form

* fix: layout shift in loading indicator

* fix: loading indicator to have correct values

* fix: update software number

* fix: image jump between MPR and default

* fix: segmentation cleanup and cine service cleanup

* fix: segmentation toolgroup clena up

* fix: highlight interval should not trigger again

* fix: issue with multiframe sorting

* rename: change onSeriesChange to onArrowsClick

* fix: buttons for tmtv and layout shift

* fix: various bugs wrt crosshairs

* fix: crosshairs re init on reset camera

* fix: middle slice calculation different from cs middle reset camera

* fix: reset camera should reset viewport camera

* fix: loading segments in MPR mode

* fix: tmtv hp back to before

* fix: layout shift

* feat: orientation markers for volume viewport

* fix: capture for volume viewports

* fix: memory leak for back to worklist

* fix: loading bar bg color

* fix: side panel for only one panel

* fix: react select style in production

* fix: various styling for segmentation groups

* fix: various ui styles

* feat: add new segmentation config styles

* fix: hover state for segmentation item

* fix: side panel layout shift

* temp add panels

* try to fix scrollbar for thimbnail

* fix: scroll not appearing for side panels

* feat: changed styles for scrollbar

* feat: add cpu fallback warning

* fix: webworker destroy

* fix: select styles

* fix: orientation marker color and position

* fix: capture screenshot for volume viewports

* fix: hide segment visibility on mpr

* fix: reloading an already loaded seg displayset

* feat: add is equal

* fix: mpr jump to measurements

* apply review comments

* fix: optimization for the segmentation load

* fix: remove unnecessary context menu and hp service reset

* fix: segmentation service wrt brush settings

* feat: initial work for the stack synchronization

* fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements

* fix: various react proptypes

* fix: thumbnails for the tmtv and change default props to default params

* feat: make showing loading indicator configurable and add docs

* bump versions and add more docs

* fix demo

* update cornerstone versions

* apply review comments

* feat: add reference lines

* fix build

* fix unit tests

* add reference lines icon

* fix: e2e tests

* fix static wado config

* docs: add segmentation service docs

* fix: docker build

* fix: keep camera and bump versions

* Try re-enabling minification to fix deploy previews

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
2022-11-16 14:19:52 -05:00
md-prog 17257ff0df upgrade @cornerstonjs/core to 0.16.8 (#2980) 2022-10-14 16:17:09 -04:00
md-prog dcf3fdbed3 dcmjs package reference upgraded to 0.28.3 (#2978)
Just a package version upgrade.
2022-10-14 14:48:14 -04:00