* feat: warn for overlapping segments
* fix: typo
* refactor mpr toggle and stack sync
* fix: wip for more general mpr
* fix: tool groups for mpr
* fix: changing of viewport id
* fix: viewport Id for the seg viewports
* fix
* update cornerstone version
* feat: add initial sop class handler for SEG
* feat: move segmentation service
* update segmentation service methods
* fix: viewport data structure
* feat: Add initial render for the DICOM SEG for each displaySet
* fix: various wrong architectural dependencies between services
* feat: initial separate SEG display in each viewport
* feat: refactore viewport action bar
* initial work for SEG hydration
* fix: various bugs regarding drag and dropping different viewports
* fix: rendering issues for multiple seg displaysets
* fix: bugs for thumbnail and hydration
* feat: fix the initial segment color
* update after rebase
* feat: initial design for the segmentation group table
* feat: initial new design for the segmentation panel
* feat: segmentation panel
* feat: make segmentation appear on all related viewports
* fix: segmentation load bug based on functional groups
* initial work for segmentation crosshairs
* fix: various stylings and functionality
* fix: various stylings for the seg panel
* fix: overflow styles
* feat: add more ui components
* feat: added segmentation config
* feat: add jump to segment
* feat: add jump to segment for DICOM SEG viewport
* fix: bugs after rebase
* feat: jump in segmentation viewport
* fix: mpr support for seg
* feat: add more icons
* feat: new icons
* feat: add new side panel
* feat: add segmentation config
* feat: add loading indicator to ohif
* feat: make hanging protocols follow matching rules for viewports
* feat: enhance drag and drop to be hanging protocol aware
* fix: mpr restore previous layout
* fix: crosshairs toggle
* fix: add auth headers to the dicom loader via dicomwebclient
* fix: bug for crosshairs toggle in mpr
* fix: seg viewport reusing old toolGroup
* feat: add loading animation with lottie
* fix: various bugs for Segmentation hydration in mpr
* feat: change outline alpha to outline opacity
* feat: loading indicator for seg viewport
* fix: various segmentation group styles
* fix: local mode for seg
* feat: add animation for the highlight
* fix: loading indicatro to show segment indices
* feat: enhance modality drop down ui
* fix: panels
* fix: download form
* fix: layout shift in loading indicator
* fix: loading indicator to have correct values
* fix: update software number
* fix: image jump between MPR and default
* fix: segmentation cleanup and cine service cleanup
* fix: segmentation toolgroup clena up
* fix: highlight interval should not trigger again
* fix: issue with multiframe sorting
* rename: change onSeriesChange to onArrowsClick
* fix: buttons for tmtv and layout shift
* fix: various bugs wrt crosshairs
* fix: crosshairs re init on reset camera
* fix: middle slice calculation different from cs middle reset camera
* fix: reset camera should reset viewport camera
* fix: loading segments in MPR mode
* fix: tmtv hp back to before
* fix: layout shift
* feat: orientation markers for volume viewport
* fix: capture for volume viewports
* fix: memory leak for back to worklist
* fix: loading bar bg color
* fix: side panel for only one panel
* fix: react select style in production
* fix: various styling for segmentation groups
* fix: various ui styles
* feat: add new segmentation config styles
* fix: hover state for segmentation item
* fix: side panel layout shift
* temp add panels
* try to fix scrollbar for thimbnail
* fix: scroll not appearing for side panels
* feat: changed styles for scrollbar
* feat: add cpu fallback warning
* fix: webworker destroy
* fix: select styles
* fix: orientation marker color and position
* fix: capture screenshot for volume viewports
* fix: hide segment visibility on mpr
* fix: reloading an already loaded seg displayset
* feat: add is equal
* fix: mpr jump to measurements
* apply review comments
* fix: optimization for the segmentation load
* fix: remove unnecessary context menu and hp service reset
* fix: segmentation service wrt brush settings
* feat: initial work for the stack synchronization
* fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements
* fix: various react proptypes
* fix: thumbnails for the tmtv and change default props to default params
* feat: make showing loading indicator configurable and add docs
* bump versions and add more docs
* fix demo
* update cornerstone versions
* apply review comments
* feat: add reference lines
* fix build
* fix unit tests
* add reference lines icon
* fix: e2e tests
* fix static wado config
* docs: add segmentation service docs
* fix: docker build
* fix: keep camera and bump versions
* Try re-enabling minification to fix deploy previews
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* added utilities to get frameNumber from imageId and add frameNumber to per-frame instance copy
* Fix measurements' display texts on the Measurements Panel to have the correct instance number and frame number
* fixed minor React bugs (errors on console)
* fixed React's console bugs that are logged for some series that doesn't have "description"
* bug fix - multi-frame files was not loading frames correctly. It was loading Frame 1 twice, and not loading the last frame. Due to wrong frame number indexing (frame number begins with 1, not 0)
* metadata parser fix - providing default values of imagePlaneModule
* measurement SR support on multi-frame DICOM
* bug fix - jumping to the selected measurment on multi-frame DICOM
* upgrade dcmjs dependency to 2.8.1
* StudySummary component - allow "description" to be null
* make getUIDsFromImageID() method public from MetadataProvider
* imageId usage fixes to be more stable
* change the variable name to be more meaningful
* fix metaProvider importing
* for(...of) instead of for(i=0;i<length;..)
as that doesn't assume anything about the layout/design and just gets next until done.
* use Array.findIndex instead of plain for loop
* use ReferencedSOPSequence[0] - because the ReferencedSOPSequence is an array that happens to have attributes of child zero when of length 1, but you shouldn't count on that.
* DisplaySetService.getDisplaySetForSOPInstanceUID() - added optional frameNumber parameter for future usage : now they are just ignored as we are not supporting multiframe splits
* simple code refactoring
* refactoring for checking undefined values - mappedAnnotations
* remove unreachable code
* code refactoring - prefer conditional chaining
* fix how we access imageIds of viewport (StackViewport)
* add oidc logout route, button in menu
* removed old comments
* use local storage to trigger signout in other tabs
* refactored to make use useEffect
* cleaned up comments
* fix remove event listener
* moved remove leftover storage variable to beginning of usemount
Co-authored-by: Michael Andersen <Michael.Andersen@rmp.uhn.ca>
* feat: add more types to HP service
* change hp to have apply protocol
* feat: mpr initial work
* apply protocol by id
* feat: mode should be able to apply protocol directly
* fix: wrong inheritance for viewports drag and drop
* apply review comments
* initial upgrade commit for tailwind
* fix: inconsistensies in button
* fix: various places with conflicts
* final fixes
* fix: dialog header color
* apply review
* fix: ptDisplaySet metadata problem
* fix: typo in xhrHeader field
* fix: temporary fix for crosshairs on reload data
* fix hotkey bug for input fields
* upgrade docusarusu to stable release
* circle ci node upgrade
* cypress node upgrade
* bump node in netlify
* bump node version
* remove versioned docs
* update resources
* fix: webpack injection of plugins
* fix meaningful label for panels
* add reviews and fix cli for creation
* copy over chunks if exists in the build
* edit templates
* edit templates
* fix yarn lock
* fix(plugin):Deploy on windows is broken
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* feat: cs3d working stack viewport and tools (#19)
* Squashed everything
* fix weird react issue
* fix eslint / prettier stuff
* thumbnails work now with cpu rendering
* feat: use new loadImageToCanvas in cs3d
* make jump to measurement work
* fix active thumbnail
* fix measurement delete
* fix window level presets
* remove segmentation and sync groups for now
* fix the dicom pdf and dicom video
* fix cornerstone window assignment for cypress
* apply review comments
Co-authored-by: Erik <erik.sweed@gmail.com>
* feat: cs3d tools and toolGroups (#20)
* add more tools to work with cs3d mode
* fix hotkeys
* add stack manager usage for stach viewports
* add image scrollbar
* wip viewport overlay
* fix toAnnotation schema for tools
* fix the unnecessary size change that triggered resize
* hanging protocol improvement to allow unmatched errors
* study description matching for hanging protocol
* fix the displaysetOptions to work
* fix handle the active tool when a new viewport is added
* fix separate toolGroups for mode
* apply review comments
* apply review comments
* yarn lock
* feat: overlay component (#21)
* fix default displayset options
* add viewport overlay
* apply review comments
* feat: loading and orientation indicators (#22)
* add loading indicator
* add orientation marker initial work
* apply review comments
* fix: orientation markers (#23)
* finished the orientation markers
* fix various broken cypress tests
* apply review comments
* update yarn lock
* feat: re-working measurement tracking mode with cornerstone3d (#2805)
* feat: cs3d working stack viewport and tools (#19)
* Squashed everything
* fix weird react issue
* fix eslint / prettier stuff
* thumbnails work now with cpu rendering
* feat: use new loadImageToCanvas in cs3d
* make jump to measurement work
* fix active thumbnail
* fix measurement delete
* fix window level presets
* remove segmentation and sync groups for now
* fix the dicom pdf and dicom video
* fix cornerstone window assignment for cypress
* apply review comments
Co-authored-by: Erik <erik.sweed@gmail.com>
* feat: Add Measurement tracking mode with cs3D (#2789)
* feat: first render for cornerstone3d tracked viewport
* make tool active work
* wip for SR extension
* renamed dicom sr to cornerstone dicom sr
* remove cornerstone from dicom pdf and video
* move dicom sr logic to sr extension
* feat: Add hydration for the length tool
* fix SR display tool for length using cs3d
* fix default config
* fix: various bugs with sr viewport and tracking
* fix promptying to continue tracking for when SR is created
* feat: add keep trackign of unique identifiers
* fix hydration for same imageIds
* feat: Add SR toolGroup creation on modeEnter
* feat: remove the need for separate mapper for SR hydration
* add SR display for ellipse
* handle hydration of elliptical ROI tool
* remove cornerstone extension
* add arrow mapping
* feat: Add ArrowAnnotate SR display and hydration
* apply review comments
* apply review comments
* move viewport labels to the viewportData
* apply review comments
* fix: integration cypress tests with cornerstone3D and add CINE tool (#2795)
* fix: integration cypress tests with cornerstone3D
* revert to addOrUpdate as it makes more sense
* fix local drag and drop
* fix tests
* move dicomLoaderService to cornerstone extension
* fix various import bugs
* fix bug for local PT series
* fix various unit tests
* bump cs3d versions
* add angle and magnify tool
* bump dependencies to avoid broken peerDeps
* feat: add initial work for capture using cs3d
* feat: show annotations on the image capture
* feat: add svg layer export
* feat: Add CINE Tool
* feat: remove unnecessary viewport rendering for cine state changes
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* docs: modify and improve documentation (#2800)
* cleanup docs versionings
* feat: Add all version explanations
* version docs for 3.0
* wip for changing docs
* wip for updated docs
* add utility module documentation
* fix demo with nohoisting of history
* add slides and video to resources
* apply review comments
* fix: drag and drop SR into SR viewport (#2803)
* update yarn lock
Co-authored-by: Erik <erik.sweed@gmail.com>
* update pathnames to match v3-stable
* update the e2e pathname
* fix: various bugs with regard to tracking workflow (#2811)
* fix: various issues with measurement panel
* fix: update default tool style for annotations
* fix: annotatoin label getting removed
* feat: Add backward compatibility for SR hydration with legacy cornerstone
* fix: cursors and ellipse ROI max style
* fix: ArrowAnnotate SRDisplay
* apply review comments
* bump package versions
* fix: bugin rehydration of SR
* fix: e2e tests
* fix active viewport thickness and arrowTool ui
* add readme for measurement tracking
* use uploaded image for readme
* add back images
* try to fix e2e test
* fix: window level presets hotkeys
* Update README.md
* update yarn lock
* feat: volume api and TMTV mode (#2817)
* feat: volumeAPI and TMTV mode
* feat: use cs3d cache service to obtain viewportData
* wip for volume api
* wip: fusion viewport
* feat: add blend mode option
* wip for image scrollbar
* fix drag and drop thumbnail
* wip for image scrollbar for voluems
* fix: element mismatch bug for scroll
* feat: Add image scrollbar to volumes
* feat: add syncGroups to volume api
* feat: add tmtv mode initial setup
* feat: add initial image options for the stack viewports
* feat: Add custom load strategy for volume viewports via HP
* apply review comments
fix: Jump presets cs3d (#2812)
* feat: Add JumpPreset to OHIF for Cornerstone3D
* fix: accessing viewport service from servicesManager
feat: volume API and TMTV mode (#2814)
* fix: do not display overlays on mip viewports
* feat: add optional disableCommands for toggle buttons
* fix: toggleCrossharis
* feat: config the crosshairs
* feat: add PetSUV Panel for changing metadata
* feat: initial work for the rectangleROIThreshold panel
* wip: measurement service
* roi threshold working
* feat: Add displayText to segmentations
* feat: add remove segmentation
* feat: add csv export
* feat: add RT export for annotations in tmtv mode
* fix: fusion to use pt in tmtv mode and measuremet mappings
* fix: various bugs
* apply review comments
* apply review comments
* feat: add fusion color maps
* add readme to tmtv mode
* Update README.md
* fix: try to fix build
* fix unit tests
* Update README.md
* feat: add about to the panel
* fix: changing strategy in roi panel
* apply review comments
* update package versions
* wip for stackPrefetch
* fix: cornerstone3d hydration and renaming (#2818)
* update readme
* renamed cornerstone extension
* wip for renaming cornerstone3D variables
* wip for renaming cornerstone3D variables
* wip for fixing bugs for SR viewport
* fix: jumpToMeasurement and initial label after hydration
* fix: fileName capitalization
* feat: use the new prefetch stack in the cs3d (#2820)
* feat: use the new prefetch stack in the cs3d
* use viewport scroll api for stack viewport
* fix cine stop when scrollbar changes
* feat: use new prefetch events
* fix loading state to not show repeatedly
* fix: various bugs for tmtv mode thresholding and new icons (#2823)
* feat: make tmtv mode available in worklist
* feat: add new icons for tmtv mode
* feat: add fusion color icon
* fix: parallel scale calculation
* fix: bump Cornerstone to get large image support working
* fix: Fix issues with CPU viewport flipping, including config files
* fix: bump cornerstone to fix magnify tool
* fix: Bump Cornerstone version to fix resetCamera issue in StackViewport
* ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys
* fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors
* feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838)
Also works with the compile time add that the existing cli uses, so that both build types work.
Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes.
* bump: dependency versions to fix hydration bugs (#2848)
* bump: dcmjs version to fix hydration bugs
* try to fix tests
* bump dependency versions
Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
* wip on storybook as a replacement for using UI components in docusaurus, since it causes too many problems
* fix: storybook webpack config
* feat: add more stories
* feat: add more stories
* feat: add more stories
* feat: fix logo and babel runtime error
* feat: move to mdx docs for ui
* feat: enhanced mdx for header and styles
* feat: Add button usecases
* feat: Add buttonGroup docs
* feat: Add docs and use case to cine and contex menu
* feat: fix decorators
* feat: add header and dropdown docs
* feat: add Icon and input docs
* feat: add more docs
* feat: add more stories
* fix: feedback section
* feat: Add doc page
* feat: Add typography and color stories
* yarn lock
* add analytics to v3-ui
* new banner image
* new viewport component
* update review comments
* Rebased to have just the static view changes
* Changes based on the PR
* Couple more changes for the PR
* Removed an extraneous log
* Fix the study worklist display when returning to the page
* Added some documentation on the static wado data source setup, and a
bounds check change on the Queue test which was failing
* PR updates - change the undefined study description to '' and remove the aws deploy
* Fixed the e2e tests to actually pass/fail correctly on actual results
* feat: Add OpenID Connect support, speed up docker rebuilds
* fix: Switch Google Cloud API URL to v1
* chore: Remove redux-oidc and use our own components instead
* Added translation for various react components in OHIF-v3
* Added a test language for debugging- test-LNG
* Added copy for test language to not get overwritten
* fix: update DICOMSR and Measurement Panel copy to use L/W
* functional viewport
* support the active viewport for snapshot
* Support empty viewport case
* bump cs-tools to pick up misc. fixes
* fix: prevent app from blowing up when snapshot modal is opened
* fix: use superscript tag to indicate ellipse is mm squared
* fix: update measurement item to allow us to specify html in MeasurementItem display text
