* Add scoord3d parse / display tool to v2
* Update measurement panel with sr measurements
* Update measurement panel to display read only items
* Cleanup debugger statement
* Check for empty measurement
* fix SCOORD3D coordinates
* Update getRenderableData.js
* fix scoord3d coordinate transformation
* implement logic to detect the ReferencedSOPInstanceUID if missing in the measurement. Fix also world to IJ coordinates.
* Fix broken unit test / import
* fix comment style
* Init tools only once
* restore default config dcmjs server
Co-authored-by: igoroctaviano <igoroctaviano@gmail.com>
* Enable study prefetcher and expose configs
* Fix progress for all images
* Enable study loading listener
* Add new default for displaying progress bar for series
* Use events instead of redux to improve performance
* Add documentation, resolve issues with different datasets
* CR Updates
* CR Updates
* CR Updates & Resolve issue when activating both stack and study prefetch
* Add upward and update display set logic
* Add new behavior to prefetching orders
* Rollback display set check and activate cache check
* Remove prefetch check
* Check if displayset has images
* Debounce check cache events
* Remove usued debounce flags
* Ignore prefetching same image
* Use new image instead of image rendered
* Continue prefetch after cache check
* Update prefetch logic after checking cache
* Remove log
* Update displayset count default to 3
* Update netlify config
Co-authored-by: Alireza <ar.sedghi@gmail.com>
* Re #2259: highlight series thumbnails border for active series (series in the active viewport)
* Re #2259: add the warning icon also on the active viewport as an overlay
* Filter segs and fetch correct metadata.
* Initiate seg loading logic on series load into viewport. Need to write.
* Automatic consumption of SEG functional.
* Pull in master.
* Fix issues after pulling in master.
* Clean up old segmentation handlers.
* WIP
* WIP
* Poppulate viewport with metadata.
* Show hide/segmentation in react-vtkjs-viewport.
* feat: 🎸 View segmentations in vtkjs viewport
* Filter segs and fetch correct metadata.
* Initiate seg loading logic on series load into viewport. Need to write.
* Automatic consumption of SEG functional.
* Pull in master.
* Fix issues after pulling in master.
* Clean up old segmentation handlers.
* WIP
* WIP
* Poppulate viewport with metadata.
* Show hide/segmentation in react-vtkjs-viewport.
* feat: 🎸 View segmentations in vtkjs viewport
* Rebase on master.
* format format format
* add basic extension parts
* Updated yarn lock
* Fetch derived/referenced displaysets in sidepanel
* Add buttons, expose seriesDescription, write notes for Danny.
* Add growcut tool extention. -> Move to a seperate repo.
* Change some text fields.
* expose dialog provider
* hide draggable area
* No pointer events for now; need to revisit
* Don't filter seg from the outset for now
* fiddling about
* fix path to series data
* fix logic to determine next available labelmapindex
* Ability to swtich between labelmaps
* Return a promise so we can make sure our labelmap is loaded before pulling metadata
* Better UI to toggle labelmaps
* Fix accidental untoggle of active labelmap for ui
* Remove brush tool from cornerstone extension
* Add cstools in preInit for seg extension
* Add buttons for seg magic
* Hide the measurements panel for now
* Slightly better seg/scissor icons
* Add eraser
* ability to switch segments
* seg color / switcher
* Fix vtk labelmap cache.
* sidepanel should scroll if there's overflow
* Use a fancier range slider
* Slightly prettier buttons
* Push in progress
* A bit more reactive; handle no-meta
* Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0
* chore: kickstart preview
* Fix conflict issues
* Refactor panel
* Isolate increment functions
* Wip segment table
* Hide selector and add scroll to segmentation
* Increase width of segment description
* Hide not used items
* Add new select for segmentations
* Align ui
* Fix default segmentation
* Fix broken import test
* Get measurements panel back and add spacing to grouped buttons
* Hide brush and selector and refresh when switching segmentations
* Add pointer events back and fix broken tests for measurement table
* Update segment list when switching humbnails
* CR Update: Minor UI adjustments
* CR Update: Set active segment
* Move components to components folder
* Add new settings ui
* Integrate configuration
* Improve styles
* Float numbers
* Improve css
* Refresh settings menu if side panel changed
* Fix settings rendering logic and remove comments
* Extract components
* Remove not used tools
* Remove non used extension
* Use style variables and remove comments
* Remove non used dep from lock
* Remove tools
* Remove segmentation from toolbar
* Add todo and brushradius from config
* Fix packagejson growcut import
* Remove webpack config already defined in parent
* Update package json description
* Change component name to british english to us
* Improve prop types
* Rename cornerstone label map event
* Scope css
* Extract and add doc to helper
* Update jsdocs for getDerivedDatasets
* Add proptypes and cr updates
* Update tablistitem proptypes
* config is readonly, rollback destructuring
* Remove event for side panel
* Add jsdocs for util
* Extract getimageid to studymetada
* Use ohif log instead of console
* Remove specific style from side panel
* Fix default props for brush radius
* Descructure configuration props from settings component to avoid invalid props
* Update proptypes to be required (settings)
* Update readme
* Remove commandsmodule
* Get configuration module inside the component
* Set selected segment
* Rename extension and use modality to filter
* Fix for failing tests (#1423)
* hello world
* Finish rebase for Igor.
* Re-fix cornerstoneTools version that got messed up in merge.
* Fix reactivity of isDisabled, write implementation for the SEG panel.
* Nuke yarn.lock to stack CST to 4.12.0
* Remove debugger statements.
* fix: bump cornerstone-tools version to address toFixed issue
* test: force tests for MISTER^MR to navigate to study directly
* test: remove eraser tool test
* test: count is off by one
* test: don't save SR state for the time being
* test: disable more tests
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com>
Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
* Instance metadata plus metadata provider overhaul.
Fix consumption of wado-uri urls
fallbacks + datatype agnosticism.
WIP DICOMify things.
fix various issues with naturalized variable naming migration.
Remove metadata provider.
Fix consumption of multiframe images and addition of CWIL metadata.
Fix strange build issues.
Fix CWIL style windowWidth to array from naturalized DICOM.
Fix PT, CT, CR and DX issues for cornerstone + DX issues for vtkjs.
Move color palette fetching down to the natuaralized JSON level.
Remove unused StudyMetadataSummary
Remove redundant dicom metadata dictionary.
Working local + json routes.
Fix SR read.
Finished first round of testing + cleaned up debugging etc.
* data => metadata for instance naturalizedJSON
* Update dcmjs version
* Correct github isssues.
* Fix erroneously replaced files.
* Danny's recommended changes.
* Instance metadata plus metadata provider overhaul.
Fix consumption of wado-uri urls
fallbacks + datatype agnosticism.
WIP DICOMify things.
fix various issues with naturalized variable naming migration.
Remove metadata provider.
Fix consumption of multiframe images and addition of CWIL metadata.
Fix strange build issues.
Fix CWIL style windowWidth to array from naturalized DICOM.
Fix PT, CT, CR and DX issues for cornerstone + DX issues for vtkjs.
Move color palette fetching down to the natuaralized JSON level.
Remove unused StudyMetadataSummary
Remove redundant dicom metadata dictionary.
Working local + json routes.
Fix SR read.
Finished first round of testing + cleaned up debugging etc.
* data => metadata for instance naturalizedJSON
* Update dcmjs version
* Correct github isssues.
* Fix erroneously replaced files.
* Danny's recommended changes.
* Update JSON CI
* Update casing of import.
* Fix jump for SR.
* Fix unit tests for measurements service
* Fix json CI test.
* fix: update yarn lock
* Fix local non-encapsulated pdf view
* CI updated to new sucess message.
Co-authored-by: Danny <danny.ri.brown@gmail.com>
* feat: 🎸 Filter by url query param for seriesInstnaceUID
* fix: Set SR viewport as active by interaction (#1118)
* fix: Set SR viewport as active by interaction
* quick fix
* (eslint) add "before" as global variables
* add data-cy
* add data-cy
* create E2E test
* (E2E) create custom command to set layout size
* remove .only e2e
* remove throttle for onScroll
* feat: 🎸 Code review in progress
Code review. Move retrieveMEtadata load to separate folders. Some minor
code clean up
* feat: 🎸 Code review. Missing changes from previous commit
* feat: 🎸 Code review missing changes from previous commit
When sorting, Criteria for instance must use instanceNumber and not
instancesNumber
* feat: 🎸 Code review. Add more jsdoc info
* feat: 🎸 Code review. Prettify changed code
* feat: 🎸 Instead of filtering do promote. WIP
* feat: 🎸 Fix minor issue. Allow promote or filter
* feat: 🎸 Changing component to functional component
* Merge from master Part1/2
Conflicts solved:
both added: core/src/studies/services/wado/retrieveMetadataLoader.js
both added: core/src/studies/services/wado/retrieveMetadataLoaderAsync.js
both added: core/src/studies/services/wado/retrieveMetadataLoaderSync.js
both modified: viewer/src/connectedComponents/ViewerRetrieveStudyData.js
both modified: viewer/src/routes/ViewerRouting.js
* Merge process from master Part 1/2
Missing files from previous commit
* feat: 🎸 Add cancelable promises to cut async methods
* feat: 🎸 Missing changes from previous merge process
* feat: 🎸 Missing changes from previous merge process
* fix: #1075 Returning to the Study List before all series have finished loading throws multiple errors in console
* fix: 🐛 Addressing review feedback from issue #1075
Adding support for cancelable pattern
Closes: #1075
* fix: 🐛 update unit test for exports
Closes: #1075
* fix: 🐛 Fix ghost shadow on thumb
Updated react-dnd package for the lates. Refactored thumbnail component
Closes: 1087
* feat: 🎸 Code review
Set flex instead of float. Add cypress tag to thumb container
* feat: 🎸 Code review. Revised style when no description
* fix: 🐛 Set series into active viewport by clicking on thumbnail
Users should be able to set the series for the active viewport by
clicking it's thumbnail into Study browser
Closes: #895
* fix: 🐛 Set series into active viewport by clicking on thumbnail
Small refactor into onClick data callback and thumbnailClick function
Closes: #895
* fix: 🐛 Refactor thumbnail click code changes
* fix: 🐛 We must clear the sopInstanceUid if we don't update it together with the viewportSpecificData, preventing console warning.
* fix: 🐛 Cleaning up a few more code changes
* init
* more shifting
* Move @babel dependencies up to workspace root
* Begin updating dependent libraries to use sync'd webpack builds w/ watches
* Commit changes before a long weekend
* Split packages into platform and extensions
* Consolidate how/where we specify file/module type entrypoints
* Make it possible to pass in extensions as App props
* Resolve viewer's modules
* Target for UMD bundle
* Add Webpack Stylus loader
* Provide WebPack build options for microscopy, vtk, and ui
* Better entrypoint for extensions
* Push changes up to switch PCs
* Fix ESM symlink build for Viewers
* Shift docs to root
* Specify additional lerna config props
* Begin providing basic readme info
* Rename example extension folder
* Shift links to bottom of doc
* First attempt at a netlify deploy preview
* Attempt to fix deploy preview build
* push workspace enabled to initial command; remove second yarn install; use npx to call gitbook cli commands
* Try to use global gitbook-cli
* Export node_modules path
* More agressive with modifying PATH
* Follow deploy log output advice
* try again to set bin path
* Try swapping bash with a new shell
* Try bash -l instead of exec bash
* Annd let's try again
* and again
* We may have figured it out johnny, boy
* We need to pull cornerstone-wado-image-loader files from hoisted node_modules
* Attempt to fix ticks/escapes
* Change copy syntax; try running tests on viewers from root for circleci
* Lower version to match circleci image
* Try alternative jest-canvas-mock location and version file syntax
* Run version command instead of calling node directly
* Try alternative jest transform
* Set path and enable workspaces
* Add codecov flags
* Use cpx so our copying finishes?
* Get all platform unit tests to run
* Run and report individually and in parallel
* Try once relying on codecov yaml to split w/ flags
* Add projects to split by flags
* Generate separate reports
* Trigger codecov after everything has finished running; these may not support flags
* Use recommended flags from issue comments for codecov
* Fix typo
* Remove clear flag
* Shift back to calling codecov from root
* Generate example for codecov issue
* Try fixing paths
* Simplify
* Try using codecov orb
* Bump circleci version
* Upload core and viewer
* Use full string paths
* Remove individual codecov calls
* Fix dir
* Combine files before upload
* Escape anchors
* tryfix syntax
* Escape string literal
* Combine lines to reduce path
* long paths
* Use home alias
* Fix filename
* Try to see the contents of our cat'd file
* Also upload `core`
* Try running with aliased folder
* Fix path; split PR and Merge unit tests into separate jobs
* Set default threshold
* Fix typo
* Changing to scoped package names
* Adding note
* Catch more updates
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.0
- @ohif/extension-dicom-html@0.0.4-alpha.0
- @ohif/extension-dicom-microscopy@0.0.9-alpha.0
- @ohif/extension-dicom-pdf@0.0.8-alpha.0
- @ohif/extension-vtk@0.1.4-alpha.0
- @ohif/core@0.11.1-alpha.0
- @ohif/i18n@0.2.3-alpha.0
- @ohif/ui@0.2.18-alpha.0
- @ohif/viewer@0.0.22-alpha.0
* Clean up primary readme
* Support for dev and dev:* commands
* Shift build command; satisfy default PWA build
* Remove old scripts
* Clean up UI to set webpack scripts
* Tidy up project links
* Clean duplicate code in UI project
* Update UI project's docs
* Clean up ui and i18n config
* Reduce duplicate code in `@ohif/core`
* Fix @ohif/ui versions
* bump @ohif/core versions
* Redux testkit dep
* Remove unused/duplicate config files for projects/packages
* ohif-core --> @ohif/core
* Safer publish command
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.1
- @ohif/extension-dicom-html@0.0.4-alpha.1
- @ohif/extension-dicom-microscopy@0.0.9-alpha.1
- @ohif/extension-dicom-pdf@0.0.8-alpha.1
- @ohif/extension-vtk@0.1.4-alpha.1
- @ohif/core@0.11.1-alpha.1
- @ohif/i18n@0.2.3-alpha.1
- @ohif/ui@0.2.18-alpha.1
- @ohif/viewer@0.0.22-alpha.1
* test version bump
* Add global prettier config
* chore(release): publish %s [skip ci]
- @ohif/viewer@0.0.22-alpha.2
* test lerna publish
* Update package.jsons
* Fix build scripts
* catch changes
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.2
- @ohif/extension-dicom-html@0.0.4-alpha.2
- @ohif/extension-dicom-microscopy@0.0.9-alpha.2
- @ohif/extension-dicom-pdf@0.0.8-alpha.2
- @ohif/extension-vtk@0.1.4-alpha.2
- @ohif/core@0.11.1-alpha.2
- @ohif/i18n@0.2.3-alpha.2
- @ohif/ui@0.2.18-alpha.2
- @ohif/viewer@0.0.22-alpha.3
* fix eslint issues caused by eslint 6 and our react-app config
* Publish with canary tag
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.3
- @ohif/extension-dicom-html@0.0.4-alpha.3
- @ohif/extension-dicom-microscopy@0.0.9-alpha.3
- @ohif/extension-dicom-pdf@0.0.8-alpha.3
- @ohif/extension-vtk@0.1.4-alpha.3
- @ohif/core@0.11.1-alpha.3
- @ohif/i18n@0.2.3-alpha.3
- @ohif/ui@0.2.18-alpha.3
- @ohif/viewer@0.0.22-alpha.4
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.4
- @ohif/extension-dicom-html@0.0.4-alpha.4
- @ohif/extension-dicom-microscopy@0.0.9-alpha.4
- @ohif/extension-dicom-pdf@0.0.8-alpha.4
- @ohif/extension-vtk@0.1.4-alpha.4
- @ohif/core@0.11.1-alpha.4
- @ohif/i18n@0.2.3-alpha.4
- @ohif/ui@0.2.18-alpha.4
- @ohif/viewer@0.0.22-alpha.5
* Simplify build
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.5
- @ohif/extension-dicom-html@0.0.4-alpha.5
- @ohif/extension-dicom-microscopy@0.0.9-alpha.5
- @ohif/extension-dicom-pdf@0.0.8-alpha.5
- @ohif/extension-vtk@0.1.4-alpha.5
- @ohif/core@0.11.1-alpha.5
- @ohif/i18n@0.2.3-alpha.5
- @ohif/ui@0.2.18-alpha.5
- @ohif/viewer@0.0.22-alpha.6
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.6
- @ohif/extension-dicom-html@0.0.4-alpha.6
- @ohif/extension-dicom-microscopy@0.0.9-alpha.6
- @ohif/extension-dicom-pdf@0.0.8-alpha.6
- @ohif/extension-vtk@0.1.4-alpha.6
- @ohif/core@0.11.1-alpha.6
- @ohif/i18n@0.2.3-alpha.6
- @ohif/ui@0.2.18-alpha.6
- @ohif/viewer@0.0.22-alpha.7
* Split version and publish
* chore(release): publish %s [skip ci]
- @ohif/extension-cornerstone@0.0.39-alpha.7
- @ohif/extension-dicom-html@0.0.4-alpha.7
- @ohif/extension-dicom-microscopy@0.0.9-alpha.7
- @ohif/extension-dicom-pdf@0.0.8-alpha.7
- @ohif/extension-vtk@0.1.4-alpha.7
- @ohif/core@0.11.1-alpha.7
- @ohif/i18n@0.2.3-alpha.7
- @ohif/ui@0.2.18-alpha.7
- @ohif/viewer@0.0.22-alpha.8
* Try simplify netlify build
* react-viewerbase --> @ohif/ui
* add test for stylus loader
* Try new way to specify publish path
* Use an output folder that won't be ignored
* Try move command
* fiddle with paths
* Dig for some information
* Make sure we're in root for our commands
* Remove discovery
* Setup script-tag example
* Fix typo
* Move config folder
* Update cornerstone extension to use shared/root webpack configs
* capture changes
* Update extension webpack configs
* Don't check in docz output
* Fix babel runtime resolution issue
* Simplify ui build steps
* Push in progress
* Shift directories
* Get viewer dev path to work
* Fix viewer commonjs build
* Fix build pwa config for viewers
* Make sure our package specific command can be called from root
* Update notes
* Fix imports and misc. merge notes
* Bump wado-image-loader version
* Switch up commands to remove webworkers copy
* Fix CI config
* Fix more broken package references
* Add react-dropzone
* Persist so e2e test can use
* Fix lockfile
* Use cypress orb to simplify CI
* Fix config
* Try again
* Install yarn latest for orb
* Install yarn a different way
* Wait on correct port
* Run tests in viewer project
* Fix cypress config
* Make Cypress happier - use default location
* Simplify e2e testing
* Capture UI changes since fork
* Catch core up
* Grab latest deps after merge
* Fix broken import
* Make sure cornerstone-wado-image-loader resolves to 3+
* Note regarding orbs
* Fix refresh on 404 routes
* Fix odd error for cornerstone-wado-image-loader
* Different target for UMD
* Simplify dev script
* Try to get fancy with netlify output
* Let's do it again
* Try to fix measurementTools issue
* See if we can get our lerna magic to work on merge to monorepo branch
