Commit Graph
622 Commits
Author SHA1 Message Date
Bill Wallace 8a335bd03d fix(StackSync): Miscellaneous fixes for stack image sync (#3663) 2023-10-03 10:59:09 -04:00
Alireza 1129c155d2 fix(config): support more values for the useSharedArrayBuffer (#3688) 2023-10-03 10:11:32 -04:00
Sofien-Sellami 04ca10d877 fix(react-select): update react select package (#3622) 2023-09-22 15:48:12 -04:00
Joe Boccanfuso 85c899b399 feat(SidePanel): new side panel tab look-and-feel (#3657) 2023-09-22 15:36:44 -04:00
Alireza 48bbd6281a feat(segmentation mode): Add create, and export SEG with Brushes (#3632) 2023-09-22 10:23:44 -04:00
Yaroslav Halchenko 11ca5b6eae docs(spelling): Add codespell config + github action, run and fix a good number of typos (#3645) 2023-09-12 07:40:38 -04:00
Salim Kanoun dd6a8812d1 export(checkbox): add missing checkbox export (#3629) 2023-09-06 09:46:01 -04:00
M.DandJoe Boccanfuso 69115da06d feat(ImageOverlayViewerTool): add ImageOverlayViewer tool that can render image overlay (pixel overlay) of the DICOM images (#3163)
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2023-09-06 09:24:17 -04:00
Alireza 9045ddaedc chore(prettier): full repo linting and code reformatting once and for all (#3627) 2023-09-01 16:19:39 -04:00
AlirezaandBill Wallace 4c6ff873e8 feat(grid): remove viewportIndex and only rely on viewportId (#3591)
Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2023-08-30 16:46:55 -04:00
Joe Boccanfuso a336992971 feat(cloud data source config): GUI and API for configuring a cloud data source with Google cloud healthcare implementation (#3589) 2023-08-25 14:19:17 -04:00
Joe Boccanfuso 0f9b36906f feat(thumbnail highlight): Thumbnails of hydrated series are now highlighted (#3594) 2023-08-16 12:51:26 -04:00
rodrigobasilio2022 f845f87716 feat(handler): Add handler for unsupported sopclassUIDs (#3601) 2023-08-16 11:37:28 -04:00
rodrigobasilio2022 3c4795d8cb feat(read-only config): read only ui for SEG/RT/SR (#3586) 2023-08-16 10:26:28 -04:00
Bill Wallace 53c16b928f feat(hp priors): Study comparison hanging protocol (#3579) 2023-08-16 10:15:12 -04:00
rodrigobasilio2022andIgor Octaviano 5302e5b62b feat(Thumbnail): Display set messages support & displaying of series inconsistencies in the thumbnail (#3499)
Co-authored-by: Igor Octaviano <igoroctaviano@gmail.com>
2023-08-11 19:16:25 -03:00
Alireza 5d435424e2 lint(curly): consistent use of curly brackets in codebase (#3584) 2023-08-09 10:07:33 -04:00
Alireza 8adf663248 fix(state synchronization): SEG and RT viewports should keep their before hydration voi (#3560) 2023-08-09 08:08:23 -04:00
Alireza 156c1ba60b perf(segmentation): make segmentation read 3x faster (#3577) 2023-08-08 14:39:31 -04:00
Alireza d8f628b125 fix(rerendering): reduce the re-rendering of the viewport grid (#3558) 2023-07-26 11:34:50 -04:00
Bill Wallace d5cbbb037d Fix the wrong aspect ratio load (#3534) 2023-07-19 15:21:19 -04:00
Bill Wallace 030e1e4104 chore(test): Integration test wait until rendered/queried instead of timed (#3540) 2023-07-19 09:41:47 -04:00
Sofien-Sellami 5ab74f5020 ui(InputNumber): adding label element in InputNumber Component and … (#3501) 2023-07-07 11:30:52 -04:00
Joe Boccanfuso ed44ad7f4b fix(segmentation): Use the series description for the segmentation label (#3517) 2023-07-04 14:39:39 -04:00
Joe Boccanfuso cc73f15c8c fix(Button): redesign of existing Button component for consistency (#3473) 2023-06-15 12:58:21 -04:00
Bruno Alves de Faria 874260340a fix(storybook): Fixing broken UI Storybook components' pages (#3455) 2023-06-07 09:05:35 -04:00
Joe BoccanfusoandAlireza da5c32bce3 fix(modal and dialogues): fixes as per specifications (#3438)
Co-authored-by: Alireza <ar.sedghi@gmail.com>
2023-06-07 08:31:09 -04:00
Alireza eb1550536c chore(build): update the beta version [BUMP BETA] 2023-06-06 21:47:51 -04:00
Alireza 828690cd3b chore(build): try to build demo and docs (#3434) 2023-06-06 13:34:26 -04:00
Alireza c7bcf1134d fix(staticwado): SM and RT and update the server with new data (#3422)
* fix bugs for the RT for the new demo

* fix SM with the static-wado server

* remove thumbnail from tmtv

* migration guide

* fix stability for the rt struct

* apply review comments

* add loading indicator to SM

* pdf works

* try to fix relative bulkData

* fix the rest

* fix preflight for the SM

* fix typo

* apply review comments

* yarn lock
2023-05-29 09:04:49 -04:00
b684d80426 fix(DicomTagBrowser): Fix parsing problems that was limiting nested tags rendering (#3306)
* fix(DicomTagBrowser): Fix parsing problems that was limiting nested tags rendering

* Added a progress indicator when switching to a list of more than 1000 rows.

* Switched to using react-window to virtualize the dicom tag browser window.

* Added filtering to the DICOM tag browser with a new search UI widget.
Lots of tweaks and updates to the look-and-feel.

* Removed unused import.

* PR feedback including some UI tweaks.

* More PR feedback.

---------

Co-authored-by: Igor Octaviano <igor.octaviano@radicalimaging.com>
Co-authored-by: Joe Boccanfuso <joe.boccanfuso@radicalimaging.com>
2023-05-26 11:42:25 -04:00
M.D 217b330d7b fix(request): Cross origin issue with fetching image and video (#3416)
* Cross origin issue when
- rendering thumbnails from prerendered url
- playing videos

* empty commit to trigger CI/CD check

* empty commit to trigger CI/CD check
2023-05-26 08:32:00 -04:00
Joe Boccanfuso 685520acab feat(command): Added command and hotkey binding for navigate to next and previous display set. (#3409)
* fix(command): Added command and hotkey binding for navigate to next and previous display set.

* Centralized the sorting (function) of display sets since at least three
areas sort display sets: hanging protocols, study/thumbnail browser and
updateViewportDisplaySet command.

* Renamed some methods for clarity.

* Scrolling active thumbnail into view for an updateViewportDisplaySet

* Added a null check.

* Added check to minimize thumbnail scrolling.
2023-05-23 15:03:55 -04:00
Joe Boccanfuso 052653f3b2 fix(Image Download): various bug fixes for image download (#3396)
- prevent non-cornerstone viewports from showing the image download dialogue
- passing the rendering engine id to ToolGroup.addViewport
- fixed the keep/dismiss aspect feature
2023-05-16 14:50:34 -04:00
Alireza 4fd81b5cd2 fix(local): fix modalities not showing in local (#3388)
* fix various bugs

* revert back docusaurus for styling issues
2023-05-12 15:04:19 -04:00
Joe Boccanfuso cba57a1b65 fix(UI): fixed results per page select menu (#3384) 2023-05-11 09:52:32 -04:00
Joe Boccanfuso 8eaa1877fd fix(DICOM PDF and Video): fixes for local DICOM load and remote data sources (#3374)
* fix(DICOM PDF and Video)
- added retrieve.directURL for local DICOM load data source; it returns a data URL
- fixed various checks for video using transfer syntaxes and SOP class UID with number of frames
- added call to 'rendered' endpoint for those data sources that support it; others get BulkDataURI

* Added DOC (PDF) and OT (for video in particular) to list of non-image thumbnail modalities.

* Fixed broken e2e tests.
2023-05-10 12:42:48 -04:00
Joe Boccanfuso 0eda151418 fix(UI) - fixed the spacing and positioning of the close button in the SnackbarItem component (#3380) 2023-05-10 09:07:17 -04:00
Alireza 2f355fa158 fix(cli): better support for external modules and toolGroups in templates (#3364)
* choe(modes, components): improved readability

This commit includes changes to improve performance in the basic-dev-mode and Thumbnail components.
Additionally, a change in the webpack configuration file was made to ignore ".min.js.map" files.
The defaultDataSourceName was also added to several configuration files, and whiteLabeling code was removed
from the local_orthanc configuration file.

* fix(cli): better path management and add dependencies

* better docs

* add default tool group to the templates

* add review comments

* apply review comments

* try to fix test

* fix thumbnail in tests
2023-05-08 15:49:28 -04:00
Bill Wallace b5b936b53e fix(jump): Jump to measurement wasn't jumping when presentation already existed (#3318)
* fix: Jump to measurement after presentation store

* Fix initial load of DICOM SR

* Fix measurement highlight issues

* Clear measurements changed to array

* Fix merge issues

* PR comments

* Removed unused formatting.  Change to single event

* Fix the unit test

* PR review comments

* refactor(viewport): simplify imports, align destructuring

Simplify import statements by removing unused imports, organize existing imports, and align destructured imports consistently across the component.

---------
2023-05-01 12:54:33 -04:00
Joe Boccanfuso 66f6e3eade feat(DICOM Upload): Added new DICOM upload dialogue launched from the worklist page (#3326)
* feat(DICOM Upload)
OHIF #3297
- DicomWebDataSource.store.dicom now accepts an ArrayBuffer of data sets to store
- DicomWebDataSource.store.dicom now also accepts optional callbacks to track upload and an AbortSignal object to cancel upload
- Added DicomFileUploader class that performs and tracks the upload of a DICOM file
- Added various UI pieces for the upload: DicomUpload, DicomUploadProgress, DicomUploadProgressItem
- ProgressLoadingBar was extracted from LoadingIndicatorProgress so it can be reused
- Modal dialogues can now optionally prevent an outside click from closing the Modal

* Passing an XMLHttpRequest to the dataSource.store.dicom method instead of callbacks and AbortSignal.
Cleanup of various UI pieces to minimize code and increase readability.

* Made the DicomUpload component a customization module exported by the cornerstone extension.

* Exposed a copy of the data source configuration via the IWebApiDataSource interface.
Added dicomUploadEnabled to a data source's configuration.

* Code clean up.

* Upgraded the dicomweb-client version to one that provides the ability to
pass a custom HTTP request. DICOM upload uses that custom HTTP request
to track progress and cancel requests.

* Distinguished between failed and cancelled uploads.

* Allow no selection in the upload dialogue.
Fixed the styling of various progress information so that everything aligns.

* Switched from cornerstone wado image loader to cornerstone dicom image loader for DICOM upload.

* Added special cancelled icon to differentiate from failed.

* Added a bit of spacing between the upload progress bar and percentage.

* Fixed minor issue with upload rejection.

* Performance improvement for cancel all uploads:
- use React memo for each upload item progress (row)
- do not await each request of a cancel all

* Fixed various padding/spacing for the DICOM upload drop zone component.
Changed the border dashing for the DICOM upload drop zone to be a background image gradient.
Added hover and active effects to the 'Cancel All Uploads' text.
2023-04-28 16:13:47 -04:00
Alireza f377153b60 fix(viewportDialog): viewportDialoge not appearing in non-tracked viewports (#3071)
* fix: viewportdialoge not appearing in non-tracked viewports

* feat(viewports): Introduce useViewportDialog and remove deprecated API

This commit introduces the `useViewportDialog` hook and replaces the deprecated `viewportDialogApi` with the new `viewportDialogState`. Additionally, the notifications in `OHIFCornerstoneRTViewport` and `OHIFCornerstoneViewport` have been removed. Finally, the `CinePlayer` component now accepts optional parameters.

* fix tests
2023-04-28 11:06:03 -04:00
Braden Morley fe7fa6e5bf fix(ui): updated input fields to match new color scheme (#3323)
* Updated input fields to match new color scheme

Added small input text fields and fixed coloring

* Added tailwind changes to viewers file
2023-04-27 21:01:53 -04:00
M.D 075008c674 feat(microscopy): add dicom microscopy extension and mode (#3247)
* skeleton for dicom-microscopy extension

* skeleton for microscopy mode

* [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension

* [feat] ported microscopy mode from private repo

* added new definitions to the package.json

* webpack configuration update for microscopy extension

* register new icons for microscopy tools

* fixes to the microscopy extension and mode

* trivial error fix - typescript type import error

* link microscopy extension with default OHIF app plugin config

* demo config fix

* fix logs

* remove unsed imports

* [fix] loading of microscopy

* [fix] webworker script loading, normalizing denaturalized dataset

* found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2

* hide thumbnail pane by default, as we have issues with

* comments

* remove unused code

* [feat] microscopy - annotation selection

* [feat] microscopy - edit annotation label

* wip

* [bugfix] dicom-microscopy tool

* [bugfix] dicom microscopy annotations

* [fix] mixed-content blocking caused by BulkDataURI

* [fix] microscopy measurements panel - center button

* [fix] microscopy measurements panel - styling

* [fix] microscopy - controls

* fix local loading of microscopy

* fix local loading of dicom microscopy

* fix typo - indexof to indexOf

* [fix] remove unused icons

* remove commented out lines from webpack configuration

* platform/viewer/public/config/default.js - revert accidental changes

* [refactor] redirecting to microscopy mode on Local mode

* attribution to DMV and SLIM viewer

* [fix] code review feedbacks

* fix thumbnails

* [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent()

* [fix] interactions, webpack config, roi selection

* [feat] microscopy - remove select tool  from UI

* microscopy author

* [fix] saving and loading SR

* [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent

* remove author section from readme

* refactor SR saving feature

* fix webpack config after merge

* [bugfix] repeated import

* fix e2e

* webpack configuration

* hide "Create report" button for microscopy
2023-04-27 20:53:52 -04:00
Alireza dd3944a87c feat(storybook): Refactor Storybook to use Typescript (#3341)
* feat(storybook): Refactor Storybook to use Typescript

This commit updates the Storybook configuration to use Typescript, including renaming `main.js` to `main.ts`, updating `core.builder` and `framework.name` to use `@storybook/builder-webpack5` and `@storybook/react-webpack5`, respectively. The code also adds options to `addon-docs` to enable adding GFM support to the generated docs. Additionally, the commit modifies `staticDir`, removes outdated addons, and makes various devDependencies and PostCSS updates to align with Storybook 7.x.x. Finally, the commit removes some unused code and relocates `Button` and `AboutModal` story files.

* apply review comments

* update yarn lock
2023-04-27 12:13:27 -04:00
Alireza 66863281c4 feat(RT): add dicom RT support via volume viewports (#3310)
* feat: initial RT support

* make the segmentation service work with representation data

* feat: make segmentation service work with representations

* fix rtss vis

* fix: rt hydration

* fix the rendering of rt names

* fix imports

* refactor: Modify status and click handling for hydration of RTStructures

Modify status and click handling for hydration of RTStructures by renaming `onPillClick` to `onStatusClick` in `OHIFCornerstoneRTViewport.tsx` and `_getStatusComponent.tsx` files. Also, update initial segmentation configurations in `PanelSegmentation.tsx` and simplify configuration changes and values for segmentation service in `SegmentationService.ts`. Finally, remove console debug in `CornerstoneViewportService.ts`.

* wip for highlighting contours

* refactor rt displayset code

* review code update

* update cornerstone dependencies

* refactor: Update license year, version number, and minor code cleanup

This commit updates the license year in several files, updates the version number in package.json, and contains minor code cleanup in two files.

* add bulkdataURI retrieve for RT

* fix package version

* apply review comments

* apply review comments

* apply review comments

* feat(panels): refactor and streamline segmentation configuration and inputs

Rewrote state hooks and streamlined the configuration input for `PanelSegmentation` to be more verbose and reusable. Included several new input types, including the `InputRange` component which now shows a fixed floating value based on the step provided. The `SegmentationConfig` component now works with dynamic values controlled by `initialConfig`. These changes should improve function usability and make the code more maintainable going forward.

* fix various bugs

* fix contour delete by upgrade cs3d version

* feat(viewport, inputNumber, segmentationConfig, orthanc): Implement minimum and maximum values for input number components, and useBulkDataURI for Orthanc configuration. Compare measurement view planes with absolute viewport view planes in Cornerstone viewport.

* update yarn lock
2023-04-26 12:21:08 -04:00
Bill Wallace 6cf271d006 fix: Service consistency typing (#3309)
* Use more consistent type/structure for services

* Fix restoring SR so the tests described work

* One more typed service

* Added types for the Cornerstone library

* Couple more type fixes
2023-04-18 11:17:50 -04:00
M.D 47c25f4364 feat(measurements): add CircleROI Tool (#3211)
* [refactor] measurement service mapping files - rename to .ts files

* [fix] RectangleROI - measurement service mapping _getReport() function - tool name fix

* [feat] added CircleROI tool from updated cornerstone3D

* [refactor] fix for typescript strong typing warnings

* [feat] cornerstone-dicom-sr extension - added CircleROI tool

* [feat] added toolbar button for CircleROI tool

* [doc] doc updates for CircleROI tool

* [update] library - dcmjs to 0.29.5

* [fix] roundNumber() function when given strings

* [fix] refactor after upgrading conerstonejs library 0.49.0

* yarn.lock file change
2023-04-17 08:23:03 -04:00
Bill Wallace 5e42a42b5f fix(viewports): The display of linked viewports during drag and drop has a race (#3286)
* fix: The display of linked viewports during drag and drop has a race

* PR review comments

* fix: Segmentation display two up

* Removing console logs

* Fix the blank viewport can have stuff added to it

* Fix the null name on HP module

* Fix the navigate to initial image

* Fix the nth interleave loader

* Fix the unit tests

* PR comments - docs mostly

* fix: Exception thrown on change displayset after double click
2023-03-31 11:58:48 -04:00
Joe Boccanfuso d5ff590dfc feat(DoubleClick): double click a viewport to one up and back (#3285)
* feat(DoubleClick): double click a viewport to one up and back

Added a toggleOneUp command that puts the active viewport into a 1x1 grid layout
and it toggles out of 'one-up' by restoring its saved 'toggleOneUpViewportGridStore'
from the StateSyncService.
Added double click customization for the Cornerstone extension with the
default double click handling being the toggleOneUp command.
Added a cypress test for the double click functionality.

* PR feedback:
- tracked viewport measurements no longer show as dashed when toggling one up
- disallowed double clicking near a measurement
- updated cornerstone3D dependencies to fix double click of TMTV and volume viewport 3D
- created ViewportGridService.getLayoutOptionsFromState

* Updated the ViewportGridService docs.

* Switched to using 'cornerstoneViewportClickCommands' and consistency with the context menu clicks.
2023-03-29 15:39:51 -04:00