* fix: docz uses too outdated packages and current documentation hasnt being updated oftenly. removing it
* fix: node docker version to prevent node req "^12.13.0 || ^14.15.0 || >=16" issue
* Add scoord3d parse / display tool to v2
* Update measurement panel with sr measurements
* Update measurement panel to display read only items
* Cleanup debugger statement
* Check for empty measurement
* fix SCOORD3D coordinates
* Update getRenderableData.js
* fix scoord3d coordinate transformation
* implement logic to detect the ReferencedSOPInstanceUID if missing in the measurement. Fix also world to IJ coordinates.
* Fix broken unit test / import
* fix comment style
* Init tools only once
* restore default config dcmjs server
Co-authored-by: igoroctaviano <igoroctaviano@gmail.com>
* Enable study prefetcher and expose configs
* Fix progress for all images
* Enable study loading listener
* Add new default for displaying progress bar for series
* Use events instead of redux to improve performance
* Add documentation, resolve issues with different datasets
* CR Updates
* CR Updates
* CR Updates & Resolve issue when activating both stack and study prefetch
* Add upward and update display set logic
* Add new behavior to prefetching orders
* Rollback display set check and activate cache check
* Remove prefetch check
* Check if displayset has images
* Debounce check cache events
* Remove usued debounce flags
* Ignore prefetching same image
* Use new image instead of image rendered
* Continue prefetch after cache check
* Update prefetch logic after checking cache
* Remove log
* Update displayset count default to 3
* Update netlify config
Co-authored-by: Alireza <ar.sedghi@gmail.com>
* Re #2259: highlight series thumbnails border for active series (series in the active viewport)
* Re #2259: add the warning icon also on the active viewport as an overlay
* feat: visualize overlapping segments
load multiple labelMaps (splitted by dcmjs because overlapping) in a segmentations [IDC2164]
Dynamically update active labelmap [IDC2164]
Co-authored-by: Davide Punzo <punzodavide@hotmail.it>
Co-authored-by: Igor Octaviano <igoroctaviano@gmail.com>
* Filter segs and fetch correct metadata.
* Initiate seg loading logic on series load into viewport. Need to write.
* Automatic consumption of SEG functional.
* Pull in master.
* Fix issues after pulling in master.
* Clean up old segmentation handlers.
* WIP
* WIP
* Poppulate viewport with metadata.
* Show hide/segmentation in react-vtkjs-viewport.
* feat: 🎸 View segmentations in vtkjs viewport
* Filter segs and fetch correct metadata.
* Initiate seg loading logic on series load into viewport. Need to write.
* Automatic consumption of SEG functional.
* Pull in master.
* Fix issues after pulling in master.
* Clean up old segmentation handlers.
* WIP
* WIP
* Poppulate viewport with metadata.
* Show hide/segmentation in react-vtkjs-viewport.
* feat: 🎸 View segmentations in vtkjs viewport
* Rebase on master.
* format format format
* add basic extension parts
* Updated yarn lock
* Fetch derived/referenced displaysets in sidepanel
* Add buttons, expose seriesDescription, write notes for Danny.
* Add growcut tool extention. -> Move to a seperate repo.
* Change some text fields.
* expose dialog provider
* hide draggable area
* No pointer events for now; need to revisit
* Don't filter seg from the outset for now
* fiddling about
* fix path to series data
* fix logic to determine next available labelmapindex
* Ability to swtich between labelmaps
* Return a promise so we can make sure our labelmap is loaded before pulling metadata
* Better UI to toggle labelmaps
* Fix accidental untoggle of active labelmap for ui
* Remove brush tool from cornerstone extension
* Add cstools in preInit for seg extension
* Add buttons for seg magic
* Hide the measurements panel for now
* Slightly better seg/scissor icons
* Add eraser
* ability to switch segments
* seg color / switcher
* Fix vtk labelmap cache.
* sidepanel should scroll if there's overflow
* Use a fancier range slider
* Slightly prettier buttons
* Push in progress
* A bit more reactive; handle no-meta
* Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0
* chore: kickstart preview
* Fix conflict issues
* Refactor panel
* Isolate increment functions
* Wip segment table
* Hide selector and add scroll to segmentation
* Increase width of segment description
* Hide not used items
* Add new select for segmentations
* Align ui
* Fix default segmentation
* Fix broken import test
* Get measurements panel back and add spacing to grouped buttons
* Hide brush and selector and refresh when switching segmentations
* Add pointer events back and fix broken tests for measurement table
* Update segment list when switching humbnails
* CR Update: Minor UI adjustments
* CR Update: Set active segment
* Move components to components folder
* Add new settings ui
* Integrate configuration
* Improve styles
* Float numbers
* Improve css
* Refresh settings menu if side panel changed
* Fix settings rendering logic and remove comments
* Extract components
* Remove not used tools
* Remove non used extension
* Use style variables and remove comments
* Remove non used dep from lock
* Remove tools
* Remove segmentation from toolbar
* Add todo and brushradius from config
* Fix packagejson growcut import
* Remove webpack config already defined in parent
* Update package json description
* Change component name to british english to us
* Improve prop types
* Rename cornerstone label map event
* Scope css
* Extract and add doc to helper
* Update jsdocs for getDerivedDatasets
* Add proptypes and cr updates
* Update tablistitem proptypes
* config is readonly, rollback destructuring
* Remove event for side panel
* Add jsdocs for util
* Extract getimageid to studymetada
* Use ohif log instead of console
* Remove specific style from side panel
* Fix default props for brush radius
* Descructure configuration props from settings component to avoid invalid props
* Update proptypes to be required (settings)
* Update readme
* Remove commandsmodule
* Get configuration module inside the component
* Set selected segment
* Rename extension and use modality to filter
* Fix for failing tests (#1423)
* hello world
* Finish rebase for Igor.
* Re-fix cornerstoneTools version that got messed up in merge.
* Fix reactivity of isDisabled, write implementation for the SEG panel.
* Nuke yarn.lock to stack CST to 4.12.0
* Remove debugger statements.
* WIP consume RTSTRUCT
* Doc API and add endpoints.
* Rebase on SEG PR.
* Update DICOM Keyword variables.
* Fix metadata vars format
* Add basic RT panel along with configuration
* Wire up configuration with settings component
* Mock structure set tables
* Improve design of settings
* Integrate list of contours
* Extract panel section
* Filter by seriesuid
* Fix slow settings
* Add jump to image
* Fix expandable items
* Improvements and CR update
* CR Update: Remove google config
* CR Update: Remove erase tool test
* CR Update: Remove instance
* CR Update: Fix issue with undefined prop
* CR Update: Update yarn lock
* Hide actions of structure item
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com>
Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
* Show series in Study Browser before their metadata is retrieved
* Switch to decreasing for loop after code review (thanks @ckedar!)
* feat: Limit concurrent series metadata requests (#1581)
* Limit concurrent series metadata requests
* Switch to decreasing for loop after code review (thanks @ckedar!)
* Set default maxConcurrentMetadataRequests to unlimited and add explaination of setting in config
Co-authored-by: kedar.netelixir <kedar.choudhary@netelixir.com>
Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
* Address comments from code review
* Comment out misbehaving test
Co-authored-by: Kedar <ckedar@gmail.com>
Co-authored-by: kedar.netelixir <kedar.choudhary@netelixir.com>
* Filter segs and fetch correct metadata.
* Initiate seg loading logic on series load into viewport. Need to write.
* Automatic consumption of SEG functional.
* Pull in master.
* Fix issues after pulling in master.
* Clean up old segmentation handlers.
* WIP
* WIP
* Poppulate viewport with metadata.
* Show hide/segmentation in react-vtkjs-viewport.
* feat: 🎸 View segmentations in vtkjs viewport
* Filter segs and fetch correct metadata.
* Initiate seg loading logic on series load into viewport. Need to write.
* Automatic consumption of SEG functional.
* Pull in master.
* Fix issues after pulling in master.
* Clean up old segmentation handlers.
* WIP
* WIP
* Poppulate viewport with metadata.
* Show hide/segmentation in react-vtkjs-viewport.
* feat: 🎸 View segmentations in vtkjs viewport
* Rebase on master.
* format format format
* add basic extension parts
* Updated yarn lock
* Fetch derived/referenced displaysets in sidepanel
* Add buttons, expose seriesDescription, write notes for Danny.
* Add growcut tool extention. -> Move to a seperate repo.
* Change some text fields.
* expose dialog provider
* hide draggable area
* No pointer events for now; need to revisit
* Don't filter seg from the outset for now
* fiddling about
* fix path to series data
* fix logic to determine next available labelmapindex
* Ability to swtich between labelmaps
* Return a promise so we can make sure our labelmap is loaded before pulling metadata
* Better UI to toggle labelmaps
* Fix accidental untoggle of active labelmap for ui
* Remove brush tool from cornerstone extension
* Add cstools in preInit for seg extension
* Add buttons for seg magic
* Hide the measurements panel for now
* Slightly better seg/scissor icons
* Add eraser
* ability to switch segments
* seg color / switcher
* Fix vtk labelmap cache.
* sidepanel should scroll if there's overflow
* Use a fancier range slider
* Slightly prettier buttons
* Push in progress
* A bit more reactive; handle no-meta
* Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0
* chore: kickstart preview
* Fix conflict issues
* Refactor panel
* Isolate increment functions
* Wip segment table
* Hide selector and add scroll to segmentation
* Increase width of segment description
* Hide not used items
* Add new select for segmentations
* Align ui
* Fix default segmentation
* Fix broken import test
* Get measurements panel back and add spacing to grouped buttons
* Hide brush and selector and refresh when switching segmentations
* Add pointer events back and fix broken tests for measurement table
* Update segment list when switching humbnails
* CR Update: Minor UI adjustments
* CR Update: Set active segment
* Move components to components folder
* Add new settings ui
* Integrate configuration
* Improve styles
* Float numbers
* Improve css
* Refresh settings menu if side panel changed
* Fix settings rendering logic and remove comments
* Extract components
* Remove not used tools
* Remove non used extension
* Use style variables and remove comments
* Remove non used dep from lock
* Remove tools
* Remove segmentation from toolbar
* Add todo and brushradius from config
* Fix packagejson growcut import
* Remove webpack config already defined in parent
* Update package json description
* Change component name to british english to us
* Improve prop types
* Rename cornerstone label map event
* Scope css
* Extract and add doc to helper
* Update jsdocs for getDerivedDatasets
* Add proptypes and cr updates
* Update tablistitem proptypes
* config is readonly, rollback destructuring
* Remove event for side panel
* Add jsdocs for util
* Extract getimageid to studymetada
* Use ohif log instead of console
* Remove specific style from side panel
* Fix default props for brush radius
* Descructure configuration props from settings component to avoid invalid props
* Update proptypes to be required (settings)
* Update readme
* Remove commandsmodule
* Get configuration module inside the component
* Set selected segment
* Rename extension and use modality to filter
* Fix for failing tests (#1423)
* hello world
* Finish rebase for Igor.
* Re-fix cornerstoneTools version that got messed up in merge.
* Fix reactivity of isDisabled, write implementation for the SEG panel.
* Nuke yarn.lock to stack CST to 4.12.0
* Remove debugger statements.
* fix: bump cornerstone-tools version to address toFixed issue
* test: force tests for MISTER^MR to navigate to study directly
* test: remove eraser tool test
* test: count is off by one
* test: don't save SR state for the time being
* test: disable more tests
Co-authored-by: James A. Petts <jamesapetts@gmail.com>
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com>
Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
* Instance metadata plus metadata provider overhaul.
Fix consumption of wado-uri urls
fallbacks + datatype agnosticism.
WIP DICOMify things.
fix various issues with naturalized variable naming migration.
Remove metadata provider.
Fix consumption of multiframe images and addition of CWIL metadata.
Fix strange build issues.
Fix CWIL style windowWidth to array from naturalized DICOM.
Fix PT, CT, CR and DX issues for cornerstone + DX issues for vtkjs.
Move color palette fetching down to the natuaralized JSON level.
Remove unused StudyMetadataSummary
Remove redundant dicom metadata dictionary.
Working local + json routes.
Fix SR read.
Finished first round of testing + cleaned up debugging etc.
* data => metadata for instance naturalizedJSON
* Update dcmjs version
* Correct github isssues.
* Fix erroneously replaced files.
* Danny's recommended changes.
* Instance metadata plus metadata provider overhaul.
Fix consumption of wado-uri urls
fallbacks + datatype agnosticism.
WIP DICOMify things.
fix various issues with naturalized variable naming migration.
Remove metadata provider.
Fix consumption of multiframe images and addition of CWIL metadata.
Fix strange build issues.
Fix CWIL style windowWidth to array from naturalized DICOM.
Fix PT, CT, CR and DX issues for cornerstone + DX issues for vtkjs.
Move color palette fetching down to the natuaralized JSON level.
Remove unused StudyMetadataSummary
Remove redundant dicom metadata dictionary.
Working local + json routes.
Fix SR read.
Finished first round of testing + cleaned up debugging etc.
* data => metadata for instance naturalizedJSON
* Update dcmjs version
* Correct github isssues.
* Fix erroneously replaced files.
* Danny's recommended changes.
* Update JSON CI
* Update casing of import.
* Fix jump for SR.
* Fix unit tests for measurements service
* Fix json CI test.
* fix: update yarn lock
* Fix local non-encapsulated pdf view
* CI updated to new sucess message.
Co-authored-by: Danny <danny.ri.brown@gmail.com>
* WindowLevel preset code changes
* Remove localStorage code as its already being saved and some small refactor on reducer/action
* Creating unit tests for preferences reducer
* Fix cypress after class naming change
* Make hidden false as default for tab components
* Remove addUserPreferences
* Small refactor to use commandsManager from getCommandsModule instead of getting it from App.js
* fix: Combined Hotkeys for special characters
* add record method to hotkey manager
* fix record plugin
* remove unused component
* add record to modal props
* rename record method
* replace handlers to use hotkeyRecord
* fix combined keys
* change expected result count from 18 to 17
* autoformat
* Remove duplicate test, that was testing the wrong things; fix label; update configs
* Revert "Remove duplicate test, that was testing the wrong things; fix label; update configs"
This reverts commit 4292f4fe67351962d61cae623b920dcbd87dd71d.
* Fix the record plugin's registration
* fix exposed record method usage
* adding logging for info level items
* Hotkey definitions don't need to be globally reactive; use localstorage/appconfig as sources of truth; not redux
* Tidy up test
* Remove unused code from UserPreferencesForm
* Log info when we run a command
* fix hotkey preference restore
* use application configured hotkeys if there are no user preferred
* Avoid logging circular ref
* Fix callouts
* Fix small issue with array
* Fix langua issue after refactor and merge
* Refactor on recordCurrentCombo as Rodrigo did before
* Separating components in 2 files
* WIP Refactor to simplify the user preferences and move into each form the save and controll functionalities
* Remove context
* Remove unused import
* Initial work on Field treatment
* Refactor General preferences
* Small refactor removing type from HotkeyField
* small update on style
* Refactor and layout fixed
* Make hotkeys preferences working with old hotkeys row
* Move error handling out of hotkey row/input component
* WIP custom form
* Moving validation function to component
* Exposing hotkeyRecord as it does not depend on HotkeyManager Class
* Making hotkeyField as much detached possible from parent component
* Small refactors
* Refactor on user preferences
* Clean up into the changes
* Small fix to let save working
* Style finish
* move about docs into about folder
* Fix double tap on single keys
* Style refactor
* Remove log
* Fix log issues on unit tests
* Fix unit test breaking on ohif/core index
* Fixing hotkeys unpause unit test issue
* Rename file to adopt lowercase
* Rename file to adopt lowercase
* Fixing callouts
* Big refactor miving some of the components into viewer and creating small components into ohif/ui
* Typo on folder name
* Updating ohif ui docs
* Remove comments
* Fix binding of combo keys
* Fix some cypress tests failures
* Fixing onCancel button
* Fixing e2e tests
* Small style update
* Fixing unit tests failing after fix issue
* Remove some not used code
* Remove left over after debug
* Adding prevent default on hotkeys events
* Fixinf existing hotkeys validator with 3 keys pressed
* Exposing hotkeys as root level on ohif-core
* Clean up
* Exposing all availableLanguages with labels and fixing an issue on language switcher
* Fixing e2e cypress tests
* Preveinting some simple errors
* Treating error once we try to set hotkey definitions
* Adding ui notification on setHotkeys errors
* Implementing a service queue request to hold until functions are implemented
* Making sure toFixed is only called on Numbers
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
Co-authored-by: Gustavo André Lelis <galelis@gmail.com>
* fix: download tool fixes & improvements
* fix filename error
* Create variable to track erros
* Fix small console error
* Fix all conflicts and merge changes from latest master with this PR's improvements
* Small improvement on select and textinput labels
* Add new icon for unlink
* Refactor on download image modal
* Adding loading screen
* Fix translation issue
* Fixing aspect Ratio and E2E tests
* Allow empty value without setting to 0
* Remove eslint comments
* Fixing typos
Co-authored-by: Gustavo André Lelis <galelis@gmail.com>
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
* E2E Tests: Save Measurements Functionality
* Moving test file to PWA only. Script-tag doesn't have the required Study
* Removing data-cy selector from cornerstone toolbar
Davide Punzo