Commit Graph
101 Commits
Author SHA1 Message Date
ohif-bot 9448993cf0 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.9.6
 - @ohif/extension-dicom-html@1.2.9
 - @ohif/extension-dicom-rt@0.4.8
 - @ohif/extension-dicom-segmentation@0.4.7
 - @ohif/extension-dicom-tag-browser@0.0.4
 - @ohif/extension-vtk@1.7.10
 - @ohif/core@2.10.7
 - @ohif/viewer@4.5.17
2020-10-07 10:54:55 +00:00
James Petts 1c556b4cc3 Update dcmjs version (#2094) 2020-10-07 12:53:30 +02:00
ohif-bot cffc44f0f4 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.9.5
 - @ohif/viewer@4.5.13
2020-09-29 10:42:25 +00:00
James Petts ea0fc07e30 Update react-cornerstone-viewport for performance improvements (#2062)
* Update react-cornerstone-viewport

* Bump react-cornerstone-viewport version.

* Comment out tests which always cause problems.
2020-09-29 12:40:27 +02:00
ohif-bot 45ca88f5b8 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.9.4
 - @ohif/extension-debugging@0.1.3
 - @ohif/extension-dicom-html@1.2.7
 - @ohif/extension-dicom-microscopy@0.51.2
 - @ohif/extension-dicom-pdf@1.0.5
 - @ohif/extension-dicom-rt@0.4.3
 - @ohif/extension-dicom-segmentation@0.4.3
 - @ohif/extension-lesion-tracker@0.2.1
 - @ohif/extension-vtk@1.7.4
 - @ohif/core@2.10.3
 - @ohif/viewer@4.5.5
2020-09-03 11:00:46 +00:00
ohif-bot 6a37a2a661 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.9.3
 - @ohif/extension-dicom-html@1.2.6
 - @ohif/extension-dicom-rt@0.4.2
 - @ohif/extension-dicom-segmentation@0.4.2
 - @ohif/extension-vtk@1.7.3
 - @ohif/core@2.10.2
 - @ohif/viewer@4.5.4
2020-09-02 12:19:23 +00:00
James Petts a8caf4bba4 [IDC-2017] Harden segmentation import to support more SEGs (#2024)
* fix: 🐛 Upgrade dcmjs version to support more SEGs
2020-09-02 14:17:30 +02:00
ohif-bot 7f3ca1fc23 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.9.2
 - @ohif/viewer@4.5.1
2020-08-20 14:50:30 +00:00
Alex BroaddusandDanny Brown 59ab68b4ed fix: Updated react-cornerstone-viewport to version 4.0.2 (#2001)
Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-08-20 10:48:16 -04:00
ohif-bot 71b6b454a3 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.9.1
 - @ohif/viewer@4.4.1
2020-08-20 02:25:10 +00:00
ohif-bot ca511edeff chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.9.0
 - @ohif/extension-dicom-rt@0.4.0
 - @ohif/extension-dicom-segmentation@0.4.0
 - @ohif/extension-vtk@1.7.0
 - @ohif/core@2.10.0
 - @ohif/viewer@4.4.0
2020-08-18 12:03:55 +00:00
James PettsandErik Ziegler bb5f30ce2a feat: 🎸 Update react-vtkjs-viewport usage to use requestPool (#1984)
* feat: 🎸 Update react-vtkjs-viewport usage to use requestPool

* Fix import of react-vtkjs-viewport to cornerstone-tools path.

* Increase maximum load time of MPR test now we are throttling requests.

* Remove debugger

Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
2020-08-18 14:01:44 +02:00
ohif-bot b7ab88b0f1 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.8.5
 - @ohif/viewer@4.2.15
2020-08-05 09:48:08 +00:00
James Petts 57a30d7c34 [IDC-1956] - Remove loading %age which is always zero. (#1959)
* Remove loading percent.

* fix: 🐛 Remove % loading on cornerstone viewport
2020-08-05 11:46:42 +02:00
ohif-bot d870ac914a chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.8.4
 - @ohif/extension-dicom-rt@0.2.5
 - @ohif/extension-vtk@1.6.7
 - @ohif/core@2.9.12
 - @ohif/viewer@4.2.11
2020-07-13 16:03:44 +00:00
ohif-bot 029f8af4c7 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.8.3
 - @ohif/extension-dicom-html@1.2.4
 - @ohif/extension-dicom-rt@0.2.4
 - @ohif/extension-dicom-segmentation@0.3.3
 - @ohif/extension-vtk@1.6.6
 - @ohif/core@2.9.11
 - @ohif/viewer@4.2.10
2020-07-13 15:37:54 +00:00
James Petts b1b4c8c861 IDC 1856 - Update dcmjs version to prevent failed naturalization of some DICOM instances. (#1898)
* fix: 🐛 Fix RT Panel hide/show

* Prevent infinite loop by persisting load errors on displaySet.

* fix: 🐛 Fix infinite error messages

* Fix unit tests.

* WIP

* fix: 🐛 If no contours for structure, cleanly exit and notify

✅ Closes: #1892

* Update dcmjs to solve issue.

* fix: 🐛 Update dcmjs to solve end of file issue
2020-07-13 17:35:55 +02:00
ohif-bot fa4b03d62d chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.8.2
 - @ohif/extension-dicom-html@1.2.3
 - @ohif/extension-dicom-rt@0.2.1
 - @ohif/extension-dicom-segmentation@0.3.1
 - @ohif/extension-vtk@1.6.3
 - @ohif/core@2.9.8
 - @ohif/viewer@4.2.5
2020-06-15 15:44:36 +00:00
Igor OctavianoandJames Petts 698e900b85 fix: 🐛 Disable seg panel when data for seg unavailable (#1732)
* Add disable state for invalid data

* fix: 🐛 Disable seg panel when data for seg unavailable

We need to gracefully handle errors if data for segmentation is
unavailable and disable the segmentation panel

✅ Closes: #1728

* Bump dcmjs version

dcmjs
  * @ohif/core: ^0.12.2 → ^0.13.0
  * @ohif/extension-cornerstone: ^0.12.3 → ^0.13.0
  * @ohif/extension-dicom-html: ^0.12.3 → ^0.13.0
  * @ohif/extension-dicom-rt: ^0.12.3 → ^0.13.0
  * @ohif/extension-dicom-segmentation: ^0.12.2 → ^0.13.0
  * @ohif/extension-vtk: ^0.12.2 → ^0.13.0
  * @ohif/viewer: ^0.12.2 → ^0.13.0

* Remove error barrier

* Fix e2e

Co-authored-by: James Petts <jamesapetts@gmail.com>
2020-06-15 17:41:36 +02:00
ohif-bot 2d827c2a49 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.8.1
 - @ohif/viewer@4.2.1
2020-06-04 10:27:47 +00:00
Igor OctavianoandJames Petts a8305772d0 fix: 🐛 Infinite frame index change when quickly jumping between (#1734)
* Remove debounce and use react-cornerstone-viewport native debounce time

* fix: 🐛 Infinite frame index change when quickly jumping between

This change removes the debounced callback function from the app and
instead uses the native debounce time from react-cornerstone-viewport.
This change allows the application to set its state in a more controled
way.

✅ Closes: #1733

* Bump rcv version

Co-authored-by: James Petts <jamesapetts@gmail.com>
2020-06-04 12:25:19 +02:00
ohif-bot eab115e70c chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.8.0
 - @ohif/extension-dicom-microscopy@0.51.0
 - @ohif/extension-dicom-rt@0.2.0
 - @ohif/extension-dicom-segmentation@0.3.0
 - @ohif/extension-vtk@1.6.0
 - @ohif/ui@1.5.0
 - @ohif/viewer@4.2.0
2020-06-04 09:54:24 +00:00
ohif-bot cebea832a3 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.7.3
 - @ohif/extension-dicom-rt@0.1.3
 - @ohif/extension-dicom-segmentation@0.2.6
 - @ohif/extension-vtk@1.5.5
 - @ohif/core@2.9.5
 - @ohif/viewer@3.11.9
2020-05-12 14:49:58 +00:00
James Petts c4f84b1174 fix: 🐛 Fix seg color load (#1724) 2020-05-12 16:47:35 +02:00
ohif-bot 8a20a0526e chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.7.2
 - @ohif/extension-dicom-html@1.2.2
 - @ohif/extension-dicom-rt@0.1.2
 - @ohif/extension-dicom-segmentation@0.2.3
 - @ohif/extension-vtk@1.5.3
 - @ohif/core@2.9.3
 - @ohif/ui@1.4.4
 - @ohif/viewer@3.11.6
2020-05-04 14:15:22 +00:00
James Petts 5b20d8f323 fix: 🐛 Proper error handling for derived display sets (#1708)
* fix: 🐛 Proper error handling for derived display sets

* Revert idc.js change
2020-05-04 16:10:39 +02:00
ohif-bot 9ea37a2201 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.7.1
 - @ohif/viewer@3.11.5
2020-05-04 12:37:30 +00:00
Igor OctavianoandJames Petts 2a66e175df Update viewport state after moving the stack (#1645)
* Update viewport state after moving the stack

* Only trigger new imagecallback if index bigger than 0

* Fix cornerstone viewport version

Co-authored-by: James Petts <jamesapetts@gmail.com>
2020-05-04 14:30:51 +02:00
ohif-bot 561911056a chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.7.0
 - @ohif/extension-dicom-html@1.2.0
 - @ohif/extension-dicom-rt@0.1.0
 - @ohif/extension-dicom-segmentation@0.2.0
 - @ohif/extension-vtk@1.5.0
 - @ohif/core@2.9.0
 - @ohif/viewer@3.11.0
2020-04-24 10:29:19 +00:00
Igor OctavianoandJames Petts 835f64d47a feat: 🎸 Seg jump to slice + show/hide
* Add segment part 2 (jump to frame and visibility toggle)

* Cr updates

* Filter displaysets with images

* feat: 🎸 Seg jump to slice + show/hide

Co-authored-by: James Petts <jamesapetts@gmail.com>
2020-04-24 12:25:05 +02:00
ohif-bot 5f4c4ab5e7 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.6.1
 - @ohif/extension-vtk@1.4.1
 - @ohif/core@2.8.1
 - @ohif/viewer@3.10.1
2020-04-23 10:04:47 +00:00
ohif-bot 5014ba864b chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.6.0
 - @ohif/extension-dicom-p10-downloader@0.1.0
 - @ohif/extension-vtk@1.4.0
 - @ohif/core@2.8.0
 - @ohif/viewer@3.10.0
2020-04-23 02:06:44 +00:00
James Pettsanddannyrb e96205de35 feat: configuration to hook into XHR Error handling
* Error handling.

* Fix error handling, add redirect example.

* remove debugger

* docs: whitelabeling and httpErrorHandler

* bump dicomweb-client version

* bump cornerstone-wado-image-loader version

* Add more documentation around httpErrorHandler callback

* test: add errorHandler as an expected top level export

Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
2020-04-22 22:01:34 -04:00
ohif-bot 70672ed663 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.5.2
 - @ohif/extension-dicom-rt@0.0.2
 - @ohif/extension-dicom-segmentation@0.1.2
 - @ohif/extension-vtk@1.3.10
 - @ohif/core@2.6.9
 - @ohif/ui@1.4.3
 - @ohif/viewer@3.8.19
2020-04-09 10:25:11 +00:00
ohif-bot 978a86bf12 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.5.1
 - @ohif/extension-dicom-html@1.1.2
 - @ohif/extension-dicom-microscopy@0.50.9
 - @ohif/extension-dicom-pdf@1.0.3
 - @ohif/viewer@3.8.14
2020-04-02 07:01:58 +00:00
ohif-bot 6ed1e47a3d chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.5.0
 - @ohif/extension-dicom-segmentation@0.1.0
 - @ohif/extension-vtk@1.3.0
 - @ohif/core@2.6.0
 - @ohif/ui@1.4.0
 - @ohif/viewer@3.8.0
2020-03-13 19:47:28 +00:00
e8842cf8ae feat: Segmentations Settings UI - Phase 1 #1391 (#1392)
* Filter segs and fetch correct metadata.

* Initiate seg loading logic on series load into viewport. Need to write.

* Automatic consumption of SEG functional.

* Pull in master.

* Fix issues after pulling in master.

* Clean up old segmentation handlers.

* WIP

* WIP

* Poppulate viewport with metadata.

* Show hide/segmentation in react-vtkjs-viewport.

* feat: 🎸 View segmentations in vtkjs viewport

* Filter segs and fetch correct metadata.

* Initiate seg loading logic on series load into viewport. Need to write.

* Automatic consumption of SEG functional.

* Pull in master.

* Fix issues after pulling in master.

* Clean up old segmentation handlers.

* WIP

* WIP

* Poppulate viewport with metadata.

* Show hide/segmentation in react-vtkjs-viewport.

* feat: 🎸 View segmentations in vtkjs viewport

* Rebase on master.

* format format format

* add basic extension parts

* Updated yarn lock

* Fetch derived/referenced displaysets in sidepanel

* Add buttons, expose seriesDescription, write notes for Danny.

* Add growcut tool extention. -> Move to a seperate repo.

* Change some text fields.

* expose dialog provider

* hide draggable area

* No pointer events for now; need to revisit

* Don't filter seg from the outset for now

* fiddling about

* fix path to series data

* fix logic to determine next available labelmapindex

* Ability to swtich between labelmaps

* Return a promise so we can make sure our labelmap is loaded before pulling metadata

* Better UI to toggle labelmaps

* Fix accidental untoggle of active labelmap for ui

* Remove brush tool from cornerstone extension

* Add cstools in preInit for seg extension

* Add buttons for seg magic

* Hide the measurements panel for now

* Slightly better seg/scissor icons

* Add eraser

* ability to switch segments

* seg color / switcher

* Fix vtk labelmap cache.

* sidepanel should scroll if there's overflow

* Use a fancier range slider

* Slightly prettier buttons

* Push in progress

* A bit more reactive; handle no-meta

* Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0

* chore: kickstart preview

* Fix conflict issues

* Refactor panel

* Isolate increment functions

* Wip segment table

* Hide selector and add scroll to segmentation

* Increase width of segment description

* Hide not used items

* Add new select for segmentations

* Align ui

* Fix default segmentation

* Fix broken import test

* Get measurements panel back and add spacing to grouped buttons

* Hide brush and selector and refresh when switching segmentations

* Add pointer events back and fix broken tests for measurement table

* Update segment list when switching humbnails

* CR Update: Minor UI adjustments

* CR Update: Set active segment

* Move components to components folder

* Add new settings ui

* Integrate configuration

* Improve styles

* Float numbers

* Improve css

* Refresh settings menu if side panel changed

* Fix settings rendering logic and remove comments

* Extract components

* Remove not used tools

* Remove non used extension

* Use style variables and remove comments

* Remove non used dep from lock

* Remove tools

* Remove segmentation from toolbar

* Add todo and brushradius from config

* Fix packagejson growcut import

* Remove webpack config already defined in parent

* Update package json description

* Change component name to british english to us

* Improve prop types

* Rename cornerstone label map event

* Scope css

* Extract and add doc to helper

* Update jsdocs for getDerivedDatasets

* Add proptypes and cr updates

* Update tablistitem proptypes

* config is readonly, rollback destructuring

* Remove event for side panel

* Add jsdocs for util

* Extract getimageid to studymetada

* Use ohif log instead of console

* Remove specific style from side panel

* Fix default props for brush radius

* Descructure configuration props from settings component to avoid invalid props

* Update proptypes to be required (settings)

* Update readme

* Remove commandsmodule

* Get configuration module inside the component

* Set selected segment

* Rename extension and use modality to filter

* Fix for failing tests (#1423)

* hello world

* Finish rebase for Igor.

* Re-fix cornerstoneTools version that got messed up in merge.

* Fix reactivity of isDisabled, write implementation for the SEG panel.

* Nuke yarn.lock to stack CST to 4.12.0

* Remove debugger statements.

* fix: bump cornerstone-tools version to address toFixed issue

* test: force tests for MISTER^MR to navigate to study directly

* test: remove eraser tool test

* test: count is off by one

* test: don't save SR state for the time being

* test: disable more tests

Co-authored-by: James A. Petts <jamesapetts@gmail.com>
Co-authored-by: dannyrb <danny.ri.brown@gmail.com>
Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com>
Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
2020-03-13 15:45:26 -04:00
ohif-bot d426b78967 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.4.3
 - @ohif/extension-dicom-html@1.1.1
 - @ohif/extension-dicom-microscopy@0.50.7
 - @ohif/extension-dicom-pdf@1.0.2
 - @ohif/extension-vtk@1.2.24
 - @ohif/core@2.5.3
 - @ohif/i18n@0.52.7
 - @ohif/ui@1.3.3
 - @ohif/viewer@3.7.8
2020-03-09 19:04:54 +00:00
James PettsandDanny 1d85f7a74e Instance metadata/metadata providers overhaul (#1481)
* Instance metadata plus metadata provider overhaul.

Fix consumption of wado-uri urls

fallbacks + datatype agnosticism.

WIP DICOMify things.

fix various issues with naturalized variable naming migration.

Remove metadata provider.

Fix consumption of multiframe images and addition of CWIL metadata.

Fix strange build issues.

Fix CWIL style windowWidth to array from naturalized DICOM.

Fix PT, CT, CR and DX issues for cornerstone + DX issues for vtkjs.

Move color palette fetching down to the natuaralized JSON level.

Remove unused StudyMetadataSummary

Remove redundant dicom metadata dictionary.

Working local + json routes.

Fix SR read.

Finished first round of testing + cleaned up debugging etc.

* data => metadata for instance naturalizedJSON

* Update dcmjs version

* Correct github isssues.

* Fix erroneously replaced files.

* Danny's recommended changes.

* Instance metadata plus metadata provider overhaul.

Fix consumption of wado-uri urls

fallbacks + datatype agnosticism.

WIP DICOMify things.

fix various issues with naturalized variable naming migration.

Remove metadata provider.

Fix consumption of multiframe images and addition of CWIL metadata.

Fix strange build issues.

Fix CWIL style windowWidth to array from naturalized DICOM.

Fix PT, CT, CR and DX issues for cornerstone + DX issues for vtkjs.

Move color palette fetching down to the natuaralized JSON level.

Remove unused StudyMetadataSummary

Remove redundant dicom metadata dictionary.

Working local + json routes.

Fix SR read.

Finished first round of testing + cleaned up debugging etc.

* data => metadata for instance naturalizedJSON

* Update dcmjs version

* Correct github isssues.

* Fix erroneously replaced files.

* Danny's recommended changes.

* Update JSON CI

* Update casing of import.

* Fix jump for SR.

* Fix unit tests for measurements service

* Fix json CI test.

* fix: update yarn lock

* Fix local non-encapsulated pdf view

* CI updated to new sucess message.

Co-authored-by: Danny <danny.ri.brown@gmail.com>
2020-03-09 19:03:23 +00:00
ohif-bot 8833731ad3 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.4.2
 - @ohif/extension-vtk@1.2.23
 - @ohif/ui@1.3.2
 - @ohif/viewer@3.7.7
2020-03-09 13:39:36 +00:00
ohif-bot 2f459a0f64 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.4.1
 - @ohif/viewer@3.7.4
2020-03-03 05:46:36 +00:00
Danny Brown ee80e02661 fix: bump react-cornerstone-viewport version to address critical issue (#1473) 2020-03-03 00:42:01 -05:00
ohif-bot 4bbf24b250 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.4.0
 - @ohif/extension-vtk@1.2.19
 - @ohif/core@2.5.0
 - @ohif/ui@1.3.0
 - @ohif/viewer@3.7.0
2020-02-20 22:04:03 +00:00
ohif-bot 4fd0c6dfcb chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.3.1
 - @ohif/viewer@3.6.3
2020-02-14 20:56:06 +00:00
ohif-bot 3529474a16 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.3.0
 - @ohif/extension-vtk@1.2.16
 - @ohif/core@2.4.0
 - @ohif/viewer@3.6.0
2020-02-10 19:17:19 +00:00
Igor OctavianoandDanny Brown 0c37a406d9 feat: 🎸 MeasurementService (#1314)
* feat: 🎸 MeasurementService

Work in progress...

* Remove cornerstone tools import

* Second iteration

* CR Update: Add update / added events example

* Add new props to measurements

* Update event log

* Add new measurementid to annotation

* Add context support

* Add value types

* Add area

* Add todo

* Wip measurement to annotation map

* Change points representation

* Add props to annotation mapping

* Add tests

* Extract formatter from init and add tests

* Sketch matchers

* Fix events and valuetypes imports

* Remove context support

* Rename formatter to mappings

* Sketching source and source definitions

* Adjust matching criteria in addOrUpdate

* CR Updates: Extract private functions and rename variables

* Fix broken tests

* Add more measurement service tests

* Update broken mapping tests

* Update test description

* Update getAnnotation to get mapping based on def and source

Co-authored-by: Danny Brown <danny.ri.brown@gmail.com>
2020-02-10 14:15:05 -05:00
ohif-bot b449f8eb0e chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.2.2
 - @ohif/extension-vtk@1.2.10
 - @ohif/core@2.3.5
 - @ohif/viewer@3.4.6
2020-01-28 12:41:49 +00:00
Erik Ziegler cf5160fb13 Add DICOM Group 6xxx Overlay Plane rendering (#1402)
* Add DICOM Group 6xxx Overlay Plane rendering

* Bump to cornerstone-tools 4.12.0 to support DICOM 6xxx Overlays
2020-01-28 13:40:03 +01:00
ohif-bot ffd27d6db4 chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.2.1
 - @ohif/extension-vtk@1.2.3
 - @ohif/viewer@3.3.3
2019-12-20 21:01:26 +00:00
ohif-bot d375d02a4b chore(release): publish [skip ci]
- @ohif/extension-cornerstone@2.2.0
 - @ohif/extension-vtk@1.2.0
 - @ohif/core@2.3.0
 - @ohif/viewer@3.3.0
2019-12-20 17:18:56 +00:00