feat(segmentation): segment statistics, labelmap interpolation and segment bidirectional (#4865)

modes/basic-test-mode/src/toolbarButtons.ts

@@ -214,7 +214,7 @@ const toolbarButtons: Button[] = [
           protocolId: 'mpr',
         },
       },
-      evaluate: 'evaluate.mpr',
+      evaluate: 'evaluate.displaySetIsReconstructable',
     },
   },
   {

modes/segmentation/src/index.tsx

@@ -12,6 +12,7 @@ const ohif = {
 const cornerstone = {
   viewport: '@ohif/extension-cornerstone.viewportModule.cornerstone',
   panelTool: '@ohif/extension-cornerstone.panelModule.panelSegmentationWithTools',
+  measurements: '@ohif/extension-cornerstone.panelModule.panelMeasurement',
 };
 
 const segmentation = {
@@ -19,6 +20,10 @@ const segmentation = {
   viewport: '@ohif/extension-cornerstone-dicom-seg.viewportModule.dicom-seg',
 };
 
+const dicomRT = {
+  viewport: '@ohif/extension-cornerstone-dicom-rt.viewportModule.dicom-rt',
+  sopClassHandler: '@ohif/extension-cornerstone-dicom-rt.sopClassHandlerModule.dicom-rt',
+};
 /**
  * Just two dependencies to be able to render a viewport with panels in order
  * to make sure that the mode is working.
@@ -27,6 +32,7 @@ const extensionDependencies = {
   '@ohif/extension-default': '^3.0.0',
   '@ohif/extension-cornerstone': '^3.0.0',
   '@ohif/extension-cornerstone-dicom-seg': '^3.0.0',
+  '@ohif/extension-cornerstone-dicom-rt': '^3.0.0',
 };
 
 function modeFactory({ modeConfiguration }) {
@@ -81,7 +87,14 @@ function modeFactory({ modeConfiguration }) {
         'TagBrowser',
       ]);
 
-      toolbarService.createButtonSection('segmentationToolbox', ['SegmentationTools']);
+      toolbarService.createButtonSection('segmentationToolbox', [
+        'SegmentationUtilities',
+        'SegmentationTools',
+      ]);
+      toolbarService.createButtonSection('segmentationToolboxUtilitySection', [
+        'InterpolateLabelmap',
+        'SegmentBidirectional',
+      ]);
       toolbarService.createButtonSection('segmentationToolboxToolsSection', [
         'BrushTools',
         'Shapes',
@@ -149,7 +162,7 @@ function modeFactory({ modeConfiguration }) {
             props: {
               leftPanels: [ohif.leftPanel],
               leftPanelResizable: true,
-              rightPanels: [cornerstone.panelTool],
+              rightPanels: [cornerstone.panelTool, cornerstone.measurements],
               rightPanelResizable: true,
               // leftPanelClosed: true,
               viewports: [
@@ -161,6 +174,10 @@ function modeFactory({ modeConfiguration }) {
                   namespace: segmentation.viewport,
                   displaySetsToDisplay: [segmentation.sopClassHandler],
                 },
+                {
+                  namespace: dicomRT.viewport,
+                  displaySetsToDisplay: [dicomRT.sopClassHandler],
+                },
               ],
             },
           };
@@ -174,7 +191,7 @@ function modeFactory({ modeConfiguration }) {
     // The example is used for a grid layout to specify that as a preferred layout
     // hangingProtocol: ['@ohif/mnGrid'],
     /** SopClassHandlers used by the mode */
-    sopClassHandlers: [ohif.sopClassHandler, segmentation.sopClassHandler],
+    sopClassHandlers: [ohif.sopClassHandler, segmentation.sopClassHandler, dicomRT.sopClassHandler],
   };
 }
 

modes/segmentation/src/initToolGroups.ts

@@ -76,6 +76,9 @@ function createTools(utilityModule) {
           },
         },
       },
+      {
+        toolName: toolNames.SegmentBidirectional,
+      },
       {
         toolName: 'ThresholdSphereBrushDynamic',
         parentTool: 'Brush',

modes/segmentation/src/toolbarButtons.ts

@@ -255,7 +255,7 @@ const toolbarButtons: Button[] = [
 
   {
     id: 'Brush',
-    uiType: 'ohif.toolButton',
+    uiType: 'ohif.toolBoxButton',
     props: {
       icon: 'icon-tool-brush',
       label: 'Brush',
@@ -292,9 +292,39 @@ const toolbarButtons: Button[] = [
       ],
     },
   },
+  {
+    id: 'InterpolateLabelmap',
+    uiType: 'ohif.toolBoxButton',
+    props: {
+      icon: 'icon-tool-interpolation',
+      label: 'Interpolate Labelmap',
+      evaluate: [
+        'evaluate.cornerstone.segmentation',
+        {
+          name: 'evaluate.displaySetIsReconstructable',
+          disabledText: 'The current viewport cannot handle interpolation.',
+        },
+      ],
+      commands: 'interpolateLabelmap',
+    },
+  },
+  {
+    id: 'SegmentBidirectional',
+    uiType: 'ohif.toolBoxButton',
+    props: {
+      icon: 'icon-tool-bidirectional-segment',
+      label: 'Segment Bidirectional',
+      tooltip: 'Finding the largest bidirectional measurement per lesion',
+      evaluate: {
+        name: 'evaluate.cornerstone.segmentation',
+        disabledText: 'Create new segmentation to enable this tool.',
+      },
+      commands: 'runSegmentBidirectional',
+    },
+  },
   {
     id: 'Eraser',
-    uiType: 'ohif.toolButton',
+    uiType: 'ohif.toolBoxButton',
     props: {
       icon: 'icon-tool-eraser',
       label: 'Eraser',
@@ -332,7 +362,7 @@ const toolbarButtons: Button[] = [
   },
   {
     id: 'Threshold',
-    uiType: 'ohif.toolButton',
+    uiType: 'ohif.toolBoxButton',
     props: {
       icon: 'icon-tool-threshold',
       label: 'Threshold Tool',