Merge pull request #1846 from OHIF/OHIF-200
[OHIF-200] - Add callouts to all DICOM SR read only measurements.
This commit is contained in:
Danny Brown
GitHub
commit
cc55d46b37
@ -28,7 +28,7 @@
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},
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"peerDependencies": {
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"@ohif/core": "^0.50.0",
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"dcmjs": "0.14.0",
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"dcmjs": "0.14.1",
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"prop-types": "^15.6.2",
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"react": "^16.11.0",
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"react-dom": "^16.11.0"
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@ -31,7 +31,7 @@
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"@ohif/core": "^0.50.0",
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"cornerstone-core": "^2.2.8",
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"cornerstone-tools": "4.16.1",
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"dcmjs": "0.14.0",
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"dcmjs": "0.14.1",
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"prop-types": "^15.6.2",
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"react": "^16.8.6",
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"react-dom": "^16.8.6"
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@ -31,7 +31,7 @@
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"@ohif/core": "^0.50.0",
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"cornerstone-core": "^2.2.8",
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"cornerstone-tools": "4.16.1",
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"dcmjs": "0.14.0",
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"dcmjs": "0.14.1",
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"prop-types": "^15.6.2",
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"react": "^16.8.6",
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"react-dom": "^16.8.6"
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@ -35,7 +35,7 @@
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"cornerstone-math": "^0.1.8",
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"cornerstone-tools": "4.16.1",
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"cornerstone-wado-image-loader": "^3.1.2",
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"dcmjs": "0.14.0",
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"dcmjs": "0.14.1",
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"dicom-parser": "^1.8.3",
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"hammerjs": "^2.0.8",
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"prop-types": "^15.6.2",
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@ -26,12 +26,16 @@ const CodeNameCodeSequenceValues = {
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ImageLibraryGroup: '126200',
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TrackingUniqueIdentifier: '112040',
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TrackingIdentifier: '112039',
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Finding: '121071',
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};
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const RELATIONSHIP_TYPE = {
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INFERRED_FROM: 'INFERRED FROM',
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};
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const CORNERSTONE_CODING_SCHEME_DESIGNATOR = 'CST4';
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const CORNERSTONE_FREETEXT_CODE_VALUE = 'CORNERSTONEFREETEXT';
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/**
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* Basic SOPClassHandler:
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* - For all Image types that are stackable, create
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@ -68,8 +72,9 @@ function _getDisplaySetsFromSeries(
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const { ConceptNameCodeSequence, ContentSequence } = instance;
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if (
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!ConceptNameCodeSequence ||
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ConceptNameCodeSequence.CodeValue !==
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CodeNameCodeSequenceValues.ImagingMeasurementReport
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CodeNameCodeSequenceValues.ImagingMeasurementReport
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) {
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console.warn(
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'Only support Imaging Measurement Report SRs (TID1500) for now'
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@ -416,6 +421,12 @@ function _processNonGeometricallyDefinedMeasurement(mergedContentSequence) {
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CodeNameCodeSequenceValues.TrackingIdentifier
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);
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const Findings = mergedContentSequence.filter(
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item =>
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item.ConceptNameCodeSequence.CodeValue ===
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CodeNameCodeSequenceValues.Finding
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);
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const measurement = {
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loaded: false,
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labels: [],
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@ -424,6 +435,23 @@ function _processNonGeometricallyDefinedMeasurement(mergedContentSequence) {
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TrackingIdentifier: TrackingIdentifierContentItem.TextValue,
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};
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if (Findings.length) {
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// TODO -> Pull in labels when we have them, just free text for now.
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const cornerstoneFreeTextFinding = Findings.find(
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Finding =>
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Finding.ConceptCodeSequence.CodingSchemeDesignator ===
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CORNERSTONE_CODING_SCHEME_DESIGNATOR &&
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Finding.ConceptCodeSequence.CodeValue ===
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CORNERSTONE_FREETEXT_CODE_VALUE
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);
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if (cornerstoneFreeTextFinding) {
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measurement.labels.push({
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label: CORNERSTONE_FREETEXT_CODE_VALUE,
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value: cornerstoneFreeTextFinding.ConceptCodeSequence.CodeMeaning,
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});
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}
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}
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NUMContentItems.forEach(item => {
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const {
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ConceptNameCodeSequence,
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@ -495,7 +523,16 @@ function _getLabelFromMeasuredValueSequence(
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const { NumericValue, MeasurementUnitsCodeSequence } = MeasuredValueSequence;
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const { CodeValue } = MeasurementUnitsCodeSequence;
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return { label: CodeMeaning, value: `${NumericValue} ${CodeValue}` }; // E.g. Long Axis: 31.0 mm
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debugger;
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const formatedNumericValue = NumericValue
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? Number(NumericValue).toFixed(2)
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: '';
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return {
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label: CodeMeaning,
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value: `${formatedNumericValue} ${CodeValue}`,
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}; // E.g. Long Axis: 31.0 mm
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}
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function _getReferencedImagesList(ImagingMeasurementReportContentSequence) {
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@ -1,4 +1,5 @@
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import { importInternal, getToolState, toolColors } from 'cornerstone-tools';
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import { pixelToCanvas } from 'cornerstone-core';
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import TOOL_NAMES from '../constants/toolNames';
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import SCOORD_TYPES from '../constants/scoordTypes';
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@ -10,8 +11,10 @@ const drawJoinedLines = importInternal('drawing/drawJoinedLines');
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const drawCircle = importInternal('drawing/drawCircle');
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const drawEllipse = importInternal('drawing/drawEllipse');
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const drawHandles = importInternal('drawing/drawHandles');
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const drawArrow = importInternal('drawing/drawArrow');
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const getNewContext = importInternal('drawing/getNewContext');
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const BaseTool = importInternal('base/BaseTool');
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const drawLinkedTextBox = importInternal('drawing/drawLinkedTextBox');
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/**
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* @class DICOMSRDisplayTool - Renders DICOMSR data in a read only manner (i.e. as an overlay).
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@ -59,18 +62,20 @@ export default class DICOMSRDisplayTool extends BaseTool {
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trackingUniqueIdentifiers.includes(td.TrackingUniqueIdentifier)
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);
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let shouldRepositionTextBoxes = false;
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for (let i = 0; i < filteredToolData.length; i++) {
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const data = filteredToolData[i];
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const { renderableData } = data;
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const { renderableData, labels } = data;
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const color =
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data.TrackingUniqueIdentifier === activeTrackingUniqueIdentifier
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? toolColors.getActiveColor()
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: toolColors.getToolColor();
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const lineWidth = 2;
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const options = {
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color,
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lineWidth: 2,
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lineWidth,
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handleRadius: 6,
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};
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@ -79,8 +84,10 @@ export default class DICOMSRDisplayTool extends BaseTool {
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switch (GraphicType) {
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case SCOORD_TYPES.POINT:
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this.renderPoint(renderableDataForGraphicType, eventData, options);
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break;
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case SCOORD_TYPES.MULTIPOINT:
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this.renderPointOrMultipoint(
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this.renderMultipoint(
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renderableDataForGraphicType,
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eventData,
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options
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@ -105,9 +112,84 @@ export default class DICOMSRDisplayTool extends BaseTool {
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break;
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}
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});
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const { element } = eventData;
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const context = getNewContext(eventData.canvasContext.canvas);
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if (!data.handles || !data.handles.textBox) {
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const textBox = {
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active: false,
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hasMoved: true,
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movesIndependently: false,
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drawnIndependently: true,
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allowedOutsideImage: true,
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hasBoundingBox: true,
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};
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const anchorPoints = _getTextBoxAnchorPointsForRenderableData(
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renderableData,
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eventData
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);
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textBox.anchorPoints = anchorPoints;
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const bottomRight = {
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x: Math.max(...anchorPoints.map(point => point.x)),
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y: Math.max(...anchorPoints.map(point => point.y)),
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};
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textBox.x = bottomRight.x;
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textBox.y = bottomRight.y;
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data.handles = {};
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data.handles.textBox = textBox;
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shouldRepositionTextBoxes = true;
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}
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const text = _getTextBoxLinesFromLabels(labels);
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function textBoxAnchorPoints() {
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return data.handles.textBox.anchorPoints;
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}
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draw(context, context => {
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drawLinkedTextBox(
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context,
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element,
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data.handles.textBox,
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text,
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data.handles,
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textBoxAnchorPoints,
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color,
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lineWidth,
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0,
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true
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);
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});
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}
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// TOOD -> text boxes may overlap with other annotations at the moment.
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// To be fixed after we get requirements.
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// if (shouldRepositionTextBoxes) {
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// this.repositionTextBox(filteredToolData, eventData);
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// }
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}
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// repositionTextBox(toolData, eventData) {
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// const toolBoundingBoxes = [];
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// for (let i = 0; i < toolData.length; i++) {
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// const toolDataI = toolData[i];
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// const { textBox } = toolDataI.handles;
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// const { anchorPoints } = textBox;
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// const boundingBox = _getBoundingBoxFromAnchorPoints(anchorPoints);
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// // Get the textbox bounding locations.
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// // Get the tool extents.
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// }
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// }
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renderPolyLine(renderableData, eventData, options) {
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const { element } = eventData;
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const context = getNewContext(eventData.canvasContext.canvas);
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@ -119,7 +201,7 @@ export default class DICOMSRDisplayTool extends BaseTool {
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});
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}
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renderPointOrMultipoint(renderableData, eventData, options) {
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renderMultipoint(renderableData, eventData, options) {
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const context = getNewContext(eventData.canvasContext.canvas);
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renderableData.forEach(points => {
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@ -129,6 +211,41 @@ export default class DICOMSRDisplayTool extends BaseTool {
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});
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}
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renderPoint(renderableData, eventData, options) {
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// Render single point as an arrow.
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const { element, image } = eventData;
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const { rows, columns } = image;
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const context = getNewContext(eventData.canvasContext.canvas);
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const { color, lineWidth } = options;
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// Find a suitable length for the image size.
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const xOffset = columns / 10;
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const yOffset = rows / 10;
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renderableData.forEach(points => {
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const point = points[0]; // The SCOORD type is POINT so the array length is 1.
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draw(context, context => {
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// Draw the arrow
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const handleStartCanvas = pixelToCanvas(element, point);
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const handleEndCanvas = pixelToCanvas(element, {
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x: point.x + xOffset,
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y: point.y + yOffset,
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});
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drawArrow(
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context,
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handleEndCanvas,
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handleStartCanvas,
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color,
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lineWidth,
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false
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);
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});
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});
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}
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renderCircle(renderableData, eventData, options) {
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const { element } = eventData;
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@ -161,3 +278,123 @@ export default class DICOMSRDisplayTool extends BaseTool {
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});
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}
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}
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function _getTextBoxLinesFromLabels(labels) {
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// TODO -> max 2 for now, need a generic solution for this!
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const labelLength = Math.min(labels.length, 2);
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const lines = [];
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for (let i = 0; i < labelLength; i++) {
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const labelEntry = labels[i];
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lines.push(`${_labelToShorthand(labelEntry.label)}${labelEntry.value}`);
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}
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return lines;
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}
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const SHORT_HAND_MAP = {
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'Short Axis': 'S ',
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'Long Axis': 'L ',
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AREA: 'Area ',
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Length: '',
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CORNERSTONEFREETEXT: '',
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};
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function _labelToShorthand(label) {
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const shortHand = SHORT_HAND_MAP[label];
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if (shortHand !== undefined) {
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return shortHand;
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}
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return label;
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}
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function _getTextBoxAnchorPointsForRenderableData(renderableData, eventData) {
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let anchorPoints = [];
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Object.keys(renderableData).forEach(GraphicType => {
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const renderableDataForGraphicType = renderableData[GraphicType];
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switch (GraphicType) {
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case SCOORD_TYPES.POINT:
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renderableDataForGraphicType.forEach(points => {
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anchorPoints = [...anchorPoints, ...points];
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// Add other arrow point based on image size.
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const { image } = eventData;
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const { rows, columns } = image;
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const xOffset = columns / 10;
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const yOffset = rows / 10;
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const point = points[0];
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anchorPoints.push({ x: point.x + xOffset, y: point.y + yOffset });
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});
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break;
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case SCOORD_TYPES.MULTIPOINT:
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case SCOORD_TYPES.POLYLINE:
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renderableDataForGraphicType.forEach(points => {
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anchorPoints = [...anchorPoints, ...points];
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});
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break;
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case SCOORD_TYPES.CIRCLE:
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renderableDataForGraphicType.forEach(circle => {
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const { center, radius } = circle;
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anchorPoints.push({ x: center.x + radius, y: center.y });
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anchorPoints.push({ x: center.x - radius, y: center.y });
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anchorPoints.push({ x: center.x, y: center.y + radius });
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anchorPoints.push({ x: center.x, y: center.y - radius });
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});
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break;
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case SCOORD_TYPES.ELLIPSE:
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renderableDataForGraphicType.forEach(ellipse => {
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const { corner1, corner2 } = ellipse;
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const halfWidth = Math.abs(corner1.x - corner2.x) / 2;
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const halfHeight = Math.abs(corner1.y - corner2.y) / 2;
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const center = {
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x: (corner1.x + corner2.x) / 2,
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y: (corner1.y + corner2.y) / 2,
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};
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anchorPoints.push({ x: center.x + halfWidth, y: center.y });
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anchorPoints.push({ x: center.x - halfWidth, y: center.y });
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anchorPoints.push({ x: center.x, y: center.y + halfHeight });
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anchorPoints.push({ x: center.x, y: center.y - halfHeight });
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});
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break;
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}
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});
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return anchorPoints;
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}
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function _getBoundingBoxFromAnchorPoints(anchorPoints) {
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let minX = Infinity;
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let maxX = -Infinity;
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let minY = Infinity;
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let maxY = -Infinity;
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anchorPoints.forEach(point => {
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const { x, y } = point;
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|
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if (x > maxX) {
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maxX = x;
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} else if (x < minX) {
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minX = x;
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}
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|
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if (y > maxX) {
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maxY = y;
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} else if (y < minY) {
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minY = y;
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}
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});
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}
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@ -14,11 +14,6 @@ export default function addMeasurement(
|
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imageId,
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displaySetInstanceUID
|
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) {
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console.log('== ADD MEASUREMENT TO CST ==');
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console.log(measurement);
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console.log(imageId);
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console.log('============================');
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// TODO -> Render rotated ellipse .
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const toolName = TOOL_NAMES.DICOM_SR_DISPLAY_TOOL;
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@ -26,6 +21,7 @@ export default function addMeasurement(
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const measurementData = {
|
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TrackingUniqueIdentifier: measurement.TrackingUniqueIdentifier,
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renderableData: {},
|
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labels: measurement.labels,
|
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};
|
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|
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measurement.coords.forEach(coord => {
|
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@ -29,7 +29,7 @@
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"peerDependencies": {
|
||||
"@ohif/core": "^0.50.0",
|
||||
"cornerstone-tools": "4.16.1",
|
||||
"dcmjs": "0.14.0",
|
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"dcmjs": "0.14.1",
|
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"prop-types": "^15.6.2",
|
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"react": "^16.13.1",
|
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"react-dom": "^16.13.1",
|
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|
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@ -65,6 +65,7 @@ const machineConfiguration = {
|
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cond: 'isNewSeries',
|
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},
|
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],
|
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|
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UNTRACK_SERIES: [
|
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{
|
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target: 'tracking',
|
||||
|
||||
@ -33,7 +33,7 @@
|
||||
"@ohif/ui": "^2.0.0",
|
||||
"cornerstone-core": "^2.3.0",
|
||||
"cornerstone-wado-image-loader": "^3.1.2",
|
||||
"dcmjs": "0.14.0",
|
||||
"dcmjs": "0.14.1",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"i18next": "^17.0.3",
|
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"i18next-browser-languagedetector": "^3.0.1",
|
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|
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@ -38,7 +38,7 @@
|
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"dependencies": {
|
||||
"@babel/runtime": "7.7.6",
|
||||
"ajv": "^6.10.0",
|
||||
"dcmjs": "0.14.0",
|
||||
"dcmjs": "0.14.1",
|
||||
"dicomweb-client": "^0.6.0",
|
||||
"immer": "6.0.2",
|
||||
"isomorphic-base64": "^1.0.2",
|
||||
|
||||
@ -69,7 +69,7 @@
|
||||
"cornerstone-math": "^0.1.8",
|
||||
"cornerstone-tools": "4.16.1",
|
||||
"cornerstone-wado-image-loader": "^3.1.2",
|
||||
"dcmjs": "0.14.0",
|
||||
"dcmjs": "0.14.1",
|
||||
"dicom-parser": "^1.8.3",
|
||||
"dicomweb-client": "^0.4.4",
|
||||
"dotenv-webpack": "^1.7.0",
|
||||
|
||||
29
yarn.lock
29
yarn.lock
@ -2679,6 +2679,17 @@
|
||||
dependencies:
|
||||
"@types/node" ">= 8"
|
||||
|
||||
"@ohif/extension-cornerstone@^2.4.0":
|
||||
version "2.8.2"
|
||||
resolved "https://registry.yarnpkg.com/@ohif/extension-cornerstone/-/extension-cornerstone-2.8.2.tgz#b8d95610b91eb43c05f84adcdd699183918a57ff"
|
||||
integrity sha512-fIkPPQdDCkoVHCYTUFB4UhmdL9VJRyYawa6FxXiKXjj9OcUsrkXj+BORYgzcEkLWTLmrB+66qtIqpQ7FyXlzJQ==
|
||||
dependencies:
|
||||
"@babel/runtime" "^7.5.5"
|
||||
classnames "^2.2.6"
|
||||
lodash.merge "^4.6.2"
|
||||
lodash.throttle "^4.1.1"
|
||||
react-cornerstone-viewport "2.3.9"
|
||||
|
||||
"@ohif/extension-lesion-tracker@^0.2.0":
|
||||
version "0.2.0"
|
||||
resolved "https://registry.yarnpkg.com/@ohif/extension-lesion-tracker/-/extension-lesion-tracker-0.2.0.tgz#37fda345204041539051750fad17551846fba40f"
|
||||
@ -7353,10 +7364,10 @@ dateformat@^3.0.0:
|
||||
resolved "https://registry.yarnpkg.com/dateformat/-/dateformat-3.0.3.tgz#a6e37499a4d9a9cf85ef5872044d62901c9889ae"
|
||||
integrity sha512-jyCETtSl3VMZMWeRo7iY1FL19ges1t55hMo5yaam4Jrsm5EPL89UQkoQRyiI+Yf4k8r2ZpdngkV8hr1lIdjb3Q==
|
||||
|
||||
dcmjs@0.14.0:
|
||||
version "0.14.0"
|
||||
resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.14.0.tgz#0dc6cb2d15ddcff759bc9002f2a9704537735d1c"
|
||||
integrity sha512-VL/Ibxe5RDsc5j5SEv3aEqdlKuBXz81/bBuW59Or0cos9vgK3XnVl3rr0ct6DWXJGK8vGIUMBOguyd/NRvlN0w==
|
||||
dcmjs@0.14.1:
|
||||
version "0.14.1"
|
||||
resolved "https://registry.yarnpkg.com/dcmjs/-/dcmjs-0.14.1.tgz#4a4f18d1e5332d38429e2d77340a6ad0052ec71e"
|
||||
integrity sha512-GGGQt4zjX7Fp0rLO5rcIQgmxZdLsEwBSZ1T74iXeJG5W32P1yiodJfBW900tNZCKj3zWamO3f5jDC1Xkv81fdg==
|
||||
dependencies:
|
||||
"@babel/polyfill" "^7.8.3"
|
||||
"@babel/runtime" "^7.8.4"
|
||||
@ -17889,6 +17900,16 @@ react-cornerstone-viewport@2.3.8:
|
||||
prop-types "^15.7.2"
|
||||
react-resize-detector "^4.2.1"
|
||||
|
||||
react-cornerstone-viewport@2.3.9:
|
||||
version "2.3.9"
|
||||
resolved "https://registry.yarnpkg.com/react-cornerstone-viewport/-/react-cornerstone-viewport-2.3.9.tgz#f9761da8e536f0a217137c6ca1a983f5882249f9"
|
||||
integrity sha512-qrhq8CbX/jq6b93cQjV2qC/mhHOvFBpxzxcHlvHzEQZt/rmRMcaYxCqjpNaNbUmmBu61wNkxesUVsggkPTTcqg==
|
||||
dependencies:
|
||||
classnames "^2.2.6"
|
||||
date-fns "^2.2.1"
|
||||
prop-types "^15.7.2"
|
||||
react-resize-detector "^4.2.1"
|
||||
|
||||
react-dates@21.2.1:
|
||||
version "21.2.1"
|
||||
resolved "https://registry.yarnpkg.com/react-dates/-/react-dates-21.2.1.tgz#a979ed6876326ccfbf754a019bc95458cc061ad8"
|
||||
|
||||
Loading…
Reference in New Issue
Block a user