IDC Re #2656: update dcmjs 0.19.4 and change tol to 0.01. + fix boundary cases in parseSCOORD3D (#2699)

* IDC: update dcmjs to version 0.19.4

* IDC Re #2656: change tol to 0.01 for segs in dcmjs. + fix boundary cases in parseSCOORD3D

platform/core/src/DICOMSR/SCOORD3D/parseSCOORD3D.js

@@ -28,7 +28,13 @@ const parseSCOORD3D = ({ servicesManager, displaySets }) => {
     srDisplaySet.isRehydratable = isRehydratable(srDisplaySet, mappings);
     srDisplaySet.isLoaded = true;
 
-    const imageDisplaySets = displaySets.filter(ds => ds.Modality !== 'SR');
+    const imageDisplaySets = displaySets.filter(
+      ds =>
+        ds.Modality !== 'SR' &&
+        ds.Modality !== 'SEG' &&
+        ds.Modality !== 'RTSTRUCT' &&
+        ds.Modality !== 'RTDOSE'
+    );
     imageDisplaySets.forEach(imageDisplaySet => {
       // Check currently added displaySets and add measurements if the sources exist.
       checkIfCanAddMeasurementsToDisplaySet(srDisplaySet, imageDisplaySet);

platform/core/src/DICOMSR/SCOORD3D/utils/getReferencedImagesList.js

@@ -24,12 +24,17 @@ const getReferencedImagesList = ImagingMeasurementReportContentSequence => {
 
   getSequenceAsArray(ImageLibraryGroup.ContentSequence).forEach(item => {
     const { ReferencedSOPSequence } = item;
-    const {
-      ReferencedSOPClassUID,
-      ReferencedSOPInstanceUID,
-    } = ReferencedSOPSequence;
+    if (ReferencedSOPSequence) {
+      const {
+        ReferencedSOPClassUID,
+        ReferencedSOPInstanceUID,
+      } = ReferencedSOPSequence;
 
-    referencedImages.push({ ReferencedSOPClassUID, ReferencedSOPInstanceUID });
+      referencedImages.push({
+        ReferencedSOPClassUID,
+        ReferencedSOPInstanceUID,
+      });
+    }
   });
 
   return referencedImages;

platform/core/src/DICOMSR/SCOORD3D/utils/processNonGeometricallyDefinedMeasurement.js

@@ -79,6 +79,12 @@ const processNonGeometricallyDefinedMeasurement = mergedContentSequence => {
       MeasuredValueSequence,
     } = item;
 
+    if (!ContentSequence) {
+      console.warn(`Graphic ${ContentSequence} missing, skipping annotation.`);
+
+      return;
+    }
+
     const { ValueType } = ContentSequence;
 
     if (!ValueType === 'SCOORD' && !ValueType === 'SCOORD3D') {