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chore(prettier): full repo linting and code reformatting once and for all (#3627)

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Alireza authored and GitHub committed 2023-09-01 16:19:39 -04:00
1 parent 01500a2d4c
commit 9045ddaedc
656 files changed
+21737 -20628
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extensions/cornerstone-dicom-sr/src/utils/hydrateStructuredReport.js
+20 -52
View File
@@ -49,19 +49,10 @@ export default function hydrateStructuredReport(
const annotationManager = CsAnnotation.state.getAnnotationManager();
const disableEditing = appConfig?.disableEditing;
const dataSource = extensionManager.getActiveDataSource()[0];
const {
measurementService,
displaySetService,
customizationService,
} = servicesManager.services;
const { measurementService, displaySetService, customizationService } = servicesManager.services;
const codingValues = customizationService.getCustomization(
'codingValues',
{}
);
const displaySet = displaySetService.getDisplaySetByUID(
displaySetInstanceUID
);
const codingValues = customizationService.getCustomization('codingValues', {});
const displaySet = displaySetService.getDisplaySetByUID(displaySetInstanceUID);
// TODO -> We should define a strict versioning somewhere.
const mappings = measurementService.getSourceMappings(
@@ -125,16 +116,14 @@ export default function hydrateStructuredReport(
// TODO: notification if no hydratable?
Object.keys(hydratableMeasurementsInSR).forEach(annotationType => {
const toolDataForAnnotationType =
hydratableMeasurementsInSR[annotationType];
const toolDataForAnnotationType = hydratableMeasurementsInSR[annotationType];
toolDataForAnnotationType.forEach(toolData => {
// Add the measurement to toolState
// dcmjs and Cornerstone3D has structural defect in supporting multi-frame
// files, and looking up the imageId from sopInstanceUIDToImageId results
// in the wrong value.
const frameNumber =
(toolData.annotation.data && toolData.annotation.data.frameNumber) || 1;
const frameNumber = (toolData.annotation.data && toolData.annotation.data.frameNumber) || 1;
const imageId =
imageIdsForToolState[toolData.sopInstanceUid][frameNumber] ||
sopInstanceUIDToImageId[toolData.sopInstanceUid];
@@ -150,10 +139,7 @@ export default function hydrateStructuredReport(
for (let i = 0; i < imageIds.length; i++) {
const imageId = imageIds[i];
const { SeriesInstanceUID, StudyInstanceUID } = metaData.get(
'instance',
imageId
);
const { SeriesInstanceUID, StudyInstanceUID } = metaData.get('instance', imageId);
if (!SeriesInstanceUIDs.includes(SeriesInstanceUID)) {
SeriesInstanceUIDs.push(SeriesInstanceUID);
@@ -162,23 +148,19 @@ export default function hydrateStructuredReport(
if (!targetStudyInstanceUID) {
targetStudyInstanceUID = StudyInstanceUID;
} else if (targetStudyInstanceUID !== StudyInstanceUID) {
console.warn(
'NO SUPPORT FOR SRs THAT HAVE MEASUREMENTS FROM MULTIPLE STUDIES.'
);
console.warn('NO SUPPORT FOR SRs THAT HAVE MEASUREMENTS FROM MULTIPLE STUDIES.');
}
}
Object.keys(hydratableMeasurementsInSR).forEach(annotationType => {
const toolDataForAnnotationType =
hydratableMeasurementsInSR[annotationType];
const toolDataForAnnotationType = hydratableMeasurementsInSR[annotationType];
toolDataForAnnotationType.forEach(toolData => {
// Add the measurement to toolState
// dcmjs and Cornerstone3D has structural defect in supporting multi-frame
// files, and looking up the imageId from sopInstanceUIDToImageId results
// in the wrong value.
const frameNumber =
(toolData.annotation.data && toolData.annotation.data.frameNumber) || 1;
const frameNumber = (toolData.annotation.data && toolData.annotation.data.frameNumber) || 1;
const imageId =
imageIdsForToolState[toolData.sopInstanceUid][frameNumber] ||
sopInstanceUIDToImageId[toolData.sopInstanceUid];
@@ -208,19 +190,11 @@ export default function hydrateStructuredReport(
CORNERSTONE_3D_TOOLS_SOURCE_VERSION
);
annotation.data.label = getLabelFromDCMJSImportedToolData(toolData);
annotation.data.finding = convertCode(
codingValues,
toolData.finding?.[0]
);
annotation.data.findingSites = convertSites(
codingValues,
toolData.findingSites
);
annotation.data.finding = convertCode(codingValues, toolData.finding?.[0]);
annotation.data.findingSites = convertSites(codingValues, toolData.findingSites);
annotation.data.site = annotation.data.findingSites?.[0];
const matchingMapping = mappings.find(
m => m.annotationType === annotationType
);
const matchingMapping = mappings.find(m => m.annotationType === annotationType);
const newAnnotationUID = measurementService.addRawMeasurement(
source,
@@ -231,9 +205,7 @@ export default function hydrateStructuredReport(
);
if (disableEditing) {
const addedAnnotation = annotationManager.getAnnotation(
newAnnotationUID
);
const addedAnnotation = annotationManager.getAnnotation(newAnnotationUID);
locking.setAnnotationLocked(addedAnnotation, true);
}
@@ -262,15 +234,14 @@ function _mapLegacyDataSet(dataset) {
);
// Retrieve the Measurements themselves
const measurementGroups = toArray(
imagingMeasurementContent.ContentSequence
).filter(codeMeaningEquals(GROUP));
const measurementGroups = toArray(imagingMeasurementContent.ContentSequence).filter(
codeMeaningEquals(GROUP)
);
// For each of the supported measurement types, compute the measurement data
const measurementData = {};
const cornerstoneToolClasses =
MeasurementReport.CORNERSTONE_TOOL_CLASSES_BY_UTILITY_TYPE;
const cornerstoneToolClasses = MeasurementReport.CORNERSTONE_TOOL_CLASSES_BY_UTILITY_TYPE;
const registeredToolClasses = [];
@@ -280,13 +251,10 @@ function _mapLegacyDataSet(dataset) {
});
measurementGroups.forEach((measurementGroup, index) => {
const measurementGroupContentSequence = toArray(
measurementGroup.ContentSequence
);
const measurementGroupContentSequence = toArray(measurementGroup.ContentSequence);
const TrackingIdentifierGroup = measurementGroupContentSequence.find(
contentItem =>
contentItem.ConceptNameCodeSequence.CodeMeaning === TRACKING_IDENTIFIER
contentItem => contentItem.ConceptNameCodeSequence.CodeMeaning === TRACKING_IDENTIFIER
);
const TrackingIdentifier = TrackingIdentifierGroup.TextValue;
@@ -304,7 +272,7 @@ function _mapLegacyDataSet(dataset) {
return dataset;
}
const toArray = function(x) {
const toArray = function (x) {
return Array.isArray(x) ? x : [x];
};