Support of RTSTRUCT visualization (#1524)

* Filter segs and fetch correct metadata. * Initiate seg loading logic on series load into viewport. Need to write. * Automatic consumption of SEG functional. * Pull in master. * Fix issues after pulling in master. * Clean up old segmentation handlers. * WIP * WIP * Poppulate viewport with metadata. * Show hide/segmentation in react-vtkjs-viewport. * feat: 🎸 View segmentations in vtkjs viewport * Filter segs and fetch correct metadata. * Initiate seg loading logic on series load into viewport. Need to write. * Automatic consumption of SEG functional. * Pull in master. * Fix issues after pulling in master. * Clean up old segmentation handlers. * WIP * WIP * Poppulate viewport with metadata. * Show hide/segmentation in react-vtkjs-viewport. * feat: 🎸 View segmentations in vtkjs viewport * Rebase on master. * format format format * add basic extension parts * Updated yarn lock * Fetch derived/referenced displaysets in sidepanel * Add buttons, expose seriesDescription, write notes for Danny. * Add growcut tool extention. -> Move to a seperate repo. * Change some text fields. * expose dialog provider * hide draggable area * No pointer events for now; need to revisit * Don't filter seg from the outset for now * fiddling about * fix path to series data * fix logic to determine next available labelmapindex * Ability to swtich between labelmaps * Return a promise so we can make sure our labelmap is loaded before pulling metadata * Better UI to toggle labelmaps * Fix accidental untoggle of active labelmap for ui * Remove brush tool from cornerstone extension * Add cstools in preInit for seg extension * Add buttons for seg magic * Hide the measurements panel for now * Slightly better seg/scissor icons * Add eraser * ability to switch segments * seg color / switcher * Fix vtk labelmap cache. * sidepanel should scroll if there's overflow * Use a fancier range slider * Slightly prettier buttons * Push in progress * A bit more reactive; handle no-meta * Update to vtk.js 11.14.0 and react-vtkjs-viewport 0.6.0 * chore: kickstart preview * Fix conflict issues * Refactor panel * Isolate increment functions * Wip segment table * Hide selector and add scroll to segmentation * Increase width of segment description * Hide not used items * Add new select for segmentations * Align ui * Fix default segmentation * Fix broken import test * Get measurements panel back and add spacing to grouped buttons * Hide brush and selector and refresh when switching segmentations * Add pointer events back and fix broken tests for measurement table * Update segment list when switching humbnails * CR Update: Minor UI adjustments * CR Update: Set active segment * Move components to components folder * Add new settings ui * Integrate configuration * Improve styles * Float numbers * Improve css * Refresh settings menu if side panel changed * Fix settings rendering logic and remove comments * Extract components * Remove not used tools * Remove non used extension * Use style variables and remove comments * Remove non used dep from lock * Remove tools * Remove segmentation from toolbar * Add todo and brushradius from config * Fix packagejson growcut import * Remove webpack config already defined in parent * Update package json description * Change component name to british english to us * Improve prop types * Rename cornerstone label map event * Scope css * Extract and add doc to helper * Update jsdocs for getDerivedDatasets * Add proptypes and cr updates * Update tablistitem proptypes * config is readonly, rollback destructuring * Remove event for side panel * Add jsdocs for util * Extract getimageid to studymetada * Use ohif log instead of console * Remove specific style from side panel * Fix default props for brush radius * Descructure configuration props from settings component to avoid invalid props * Update proptypes to be required (settings) * Update readme * Remove commandsmodule * Get configuration module inside the component * Set selected segment * Rename extension and use modality to filter * Fix for failing tests (#1423) * hello world * Finish rebase for Igor. * Re-fix cornerstoneTools version that got messed up in merge. * Fix reactivity of isDisabled, write implementation for the SEG panel. * Nuke yarn.lock to stack CST to 4.12.0 * Remove debugger statements. * WIP consume RTSTRUCT * Doc API and add endpoints. * Rebase on SEG PR. * Update DICOM Keyword variables. * Fix metadata vars format * Add basic RT panel along with configuration * Wire up configuration with settings component * Mock structure set tables * Improve design of settings * Integrate list of contours * Extract panel section * Filter by seriesuid * Fix slow settings * Add jump to image * Fix expandable items * Improvements and CR update * CR Update: Remove google config * CR Update: Remove erase tool test * CR Update: Remove instance * CR Update: Fix issue with undefined prop * CR Update: Update yarn lock * Hide actions of structure item Co-authored-by: James A. Petts <jamesapetts@gmail.com> Co-authored-by: dannyrb <danny.ri.brown@gmail.com> Co-authored-by: igoroctaviano] <igoroctaviano@users.noreply.github.com> Co-authored-by: Mirna Silva <mirna.silva@radicalimaging.com>
2020-04-09 12:21:43 +02:00
1 parent 83f9478977
commit 858484f250
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+import cornerstone from 'cornerstone-core';
+import getImageIdOfCenterFrameOfROIContour from './lib/getImageIdOfCenterFrameOfROIContour';
+import structureSetReferencesSeriesInstanceUid from './lib/structureSetReferencesSeriesInstanceUid';
+
+// We should put this as a helper somewhere as we are using it in mutliple places.
+function refreshViewport() {
+  cornerstone.getEnabledElements().forEach(enabledElement => {
+    cornerstone.updateImage(enabledElement.element);
+  });
+}
+
+const configuration = {
+  lineWidth: 3,
+  opacity: 1.0,
+};
+
+const state = {
+  StructureSets: [],
+};
+
+/**
+ * Adds a structure set to the module.
+ * @param {Object} structureSetData The structure set data.
+ */
+function setStructureSet(structureSetData) {
+  state.StructureSets.push(structureSetData);
+}
+
+/**
+ * Returns the StructureSet with the given SeriesInstanceUID.
+ * @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
+ *
+ * @returns {Object} The StructureSet.
+ */
+function getStructureSet(SeriesInstanceUID) {
+  return state.StructureSets.find(
+    structureSet => structureSet.SeriesInstanceUID === SeriesInstanceUID
+  );
+}
+
+/**
+ * Returns the ROI Contour with the given ROINumber on the StructureSet defined by the given
+ * SeriesInstanceUID.
+ * @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
+ * @param {number} ROINumber The ROINUmber of the ROIContour to fetch.
+ */
+function getROIContour(SeriesInstanceUID, ROINumber) {
+  const structureSet = getStructureSet(SeriesInstanceUID);
+
+  if (!structureSet) {
+    return;
+  }
+
+  return structureSet.ROIContours.find(
+    ROIContour => ROIContour.ROINumber === ROINumber
+  );
+}
+
+/**
+ * Hides the StructureSet.
+ * @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
+ */
+function setHideStructureSet(SeriesInstanceUID) {
+  _setStructureSetVisible(SeriesInstanceUID, false);
+}
+
+/**
+ * Shows the StructureSet.
+ * @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
+ */
+function setShowStructureSet(SeriesInstanceUID) {
+  _setStructureSetVisible(SeriesInstanceUID, true);
+}
+
+/**
+ * Sets the visibility of the StructureSet.
+ * @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
+ * @param {boolean} visible Whether the StructureSet should visible or not.
+ */
+function _setStructureSetVisible(SeriesInstanceUID, visible = true) {
+  const StructureSet = getStructureSet(SeriesInstanceUID);
+
+  if (StructureSet) {
+    StructureSet.visible = visible;
+
+    refreshViewport();
+  }
+}
+
+/**
+ * Toggles the visibility of the StructureSet.
+ * @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
+ */
+function setToggleStructureSet(SeriesInstanceUID) {
+  const StructureSet = getStructureSet(SeriesInstanceUID);
+
+  if (StructureSet) {
+    StructureSet.visible = !StructureSet.visible;
+
+    refreshViewport();
+  }
+}
+
+/**
+ * Hides the ROIContour.
+ * @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
+ * @param {number} ROINumber The ROINUmber of the ROIContour.
+ */
+function setHideROIContour(SeriesInstanceUID, ROINumber) {
+  _setROIContourVisible(SeriesInstanceUID, ROINumber, false);
+}
+
+/**
+ * Shows the ROIContour.
+ * @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
+ * @param {number} ROINumber The ROINUmber of the ROIContour.
+ */
+function setShowROIContour(SeriesInstanceUID, ROINumber) {
+  _setROIContourVisible(SeriesInstanceUID, ROINumber, true);
+}
+
+/**
+ * Sets the visibility of the ROIContour.
+ * @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
+ * @param {number} ROINumber The ROINUmber of the ROIContour.
+ * @param {boolean} visible Whether the StructureSet should visible or not.
+ */
+function _setROIContourVisible(SeriesInstanceUID, ROINumber, visible = true) {
+  const ROIContour = getROIContour(SeriesInstanceUID, ROINumber);
+
+  if (ROIContour) {
+    ROIContour.visible = visible;
+
+    refreshViewport();
+  }
+}
+
+/**
+ * Toggles the visibility of the ROIContour.
+ * @param {string} SeriesInstanceUID The SeriesInstanceUID of the StructureSet.
+ * @param {number} ROINumber The ROINUmber of the ROIContour.
+ */
+function setToggleROIContour(SeriesInstanceUID, ROINumber) {
+  const ROIContour = getROIContour(SeriesInstanceUID, ROINumber);
+
+  if (ROIContour) {
+    ROIContour.visible = !ROIContour.visible;
+
+    refreshViewport();
+  }
+}
+
+/**
+ * Returns an array of StructureSets which reference the given SeriesInstanceUID.
+ * @param {string} SeriesInstanceUID The SeriesInstanceUID to check.
+ */
+function getStructuresSetsWhichReferenceSeriesInstanceUid(
+  SeriesInstanceUID
+) {
+  const { StructureSets } = state;
+  return StructureSets.filter(StructureSet =>
+    structureSetReferencesSeriesInstanceUid(
+      StructureSet,
+      SeriesInstanceUID
+    )
+  );
+}
+
+export default {
+  getters: {
+    structureSet: getStructureSet,
+    ROIContour: getROIContour,
+    structuresSetsWhichReferenceSeriesInstanceUid: getStructuresSetsWhichReferenceSeriesInstanceUid,
+    imageIdOfCenterFrameOfROIContour: getImageIdOfCenterFrameOfROIContour,
+  },
+  setters: {
+    structureSet: setStructureSet,
+    hideROIContour: setHideROIContour,
+    showROIContour: setShowROIContour,
+    toggleROIContour: setToggleROIContour,
+    hideStructureSet: setHideStructureSet,
+    showStructureSet: setShowStructureSet,
+    toggleStructureSet: setToggleStructureSet,
+  },
+  state,
+  configuration,
+};